AlfalfaGEDB | Msa1073670

M. sativa cultivar zhongmu-4 / Msa1073670

KEGG: K06118
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006629 GO:0006643 GO:0006664 GO:0006950 GO:0007154 GO:0008146 GO:0008150 GO:0008152 GO:0008270 GO:0008610 GO:0009058 GO:0009247 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016740 GO:0016782 GO:0019899 GO:0019904 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0101016 GO:1901135 GO:1901137 GO:1901576 GO:1903509
PFAM: PF01370.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073670	XP_003625059.1	98.952	477	5	0	1	477	1	477	0.0	989

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073670	sp\|Q84KI6\|SQD1_SPIOL	76.190	483	108	2	1	477	1	482	0.0	768

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073670	G7KRQ8	98.952	477	5	0	1	477	1	477	0.0	989

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0115410	Msa1073670	0.819049	1.424357e-52	-8.615850e-47
Msa0179200	Msa1073670	0.824871	6.380958e-54	-8.615850e-47
Msa0199490	Msa1073670	0.818256	2.155759e-52	-8.615850e-47
Msa0233200	Msa1073670	0.801236	9.902305e-49	-8.615850e-47
Msa0256590	Msa1073670	0.825385	4.824587e-54	-8.615850e-47
Msa0295730	Msa1073670	0.843661	1.221455e-58	-8.615850e-47
Msa0306160	Msa1073670	0.810075	1.380234e-50	-8.615850e-47
Msa0319340	Msa1073670	0.801455	8.930221e-49	-8.615850e-47
Msa0380390	Msa1073670	0.813002	3.190432e-51	-8.615850e-47
Msa0515730	Msa1073670	0.832092	1.151506e-55	-8.615850e-47

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073670	MtrunA17_Chr7g0256731	98.952	477	5	0	1	477	1	477	0.0	989

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1073670	AT4G33030.1	77.755	481	99	5	1	477	1	477	0.0	753

Showing 1 to 1 of 1 entries

Previous1Next

Find 148 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTATTGAGCTATACAT+TGG	0.580925	7_2:+71313434	Msa1073670:CDS
AAATTATGCCTGGTGTTTCT+TGG	0.333741	7_2:+71315795	Msa1073670:CDS
AACACTAAACTAGTTGATCT+TGG	0.398824	7_2:+71315686	Msa1073670:CDS
AACCTTTGTTAGAAAGGTGG+AGG	0.503426	7_2:-71313289	None:intergenic
AACGTGTTTGAAGTAGTTAG+AGG	0.499079	7_2:+71312950	Msa1073670:five_prime_UTR
AACTCCAAATATTGATATTG+AGG	0.510539	7_2:+71313685	Msa1073670:CDS
AACTGATCTGAATCAAGGAG+TGG	0.668884	7_2:+71313847	Msa1073670:CDS
AAGCCGTCTAAATGGAGTTT+TGG	0.349474	7_2:-71313105	None:intergenic
AAGCGAGTAATGGTCATTGG+TGG	0.585308	7_2:+71313239	Msa1073670:CDS
AAGTATCAATTGGGGTTCAT+AGG	0.373638	7_2:-71312166	None:intergenic

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCGATAACAAGTATCAATTG+GGG	-	chr7_2:71312177-71312196	None:intergenic	30.0%
AATTAGAGTGTAGAGTGAAA+TGG	-	chr7_2:71312256-71312275	None:intergenic	30.0%
ATTCAAGTGAAGAAGGATAT+AGG	-	chr7_2:71312315-71312334	None:intergenic	30.0%
TCAGAATCATTACTTGTGTT+TGG	+	chr7_2:71312479-71312498	Msa1073670:intron	30.0%
CAGAATCATTACTTGTGTTT+GGG	+	chr7_2:71312480-71312499	Msa1073670:intron	30.0%
CAGTAAAAAGAAAGGAAAAG+AGG	+	chr7_2:71312610-71312629	Msa1073670:intron	30.0%
GGAAAAGAGGTAATGAAAAA+TGG	+	chr7_2:71312623-71312642	Msa1073670:intron	30.0%
CCTTCCTCAATATCAATATT+TGG	-	chr7_2:71313692-71313711	None:intergenic	30.0%
CCAAATATTGATATTGAGGA+AGG	+	chr7_2:71313689-71313708	Msa1073670:CDS	30.0%
TATATTACCATCACTCACAA+CGG	+	chr7_2:71313713-71313732	Msa1073670:CDS	30.0%

Showing 1 to 10 of 284 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	71312114	71316247	71312114	ID=Msa1073670;Name=Msa1073670
chr7_2	mRNA	71312114	71316247	71312114	ID=Msa1073670-mRNA-1;Parent=Msa1073670;Name=Msa1073670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=215\|1\|1\|1\|0.5\|0.33\|3\|391\|477
chr7_2	exon	71312114	71312290	71312114	ID=Msa1073670-mRNA-1:exon:16134;Parent=Msa1073670-mRNA-1
chr7_2	exon	71312949	71314018	71312949	ID=Msa1073670-mRNA-1:exon:16135;Parent=Msa1073670-mRNA-1
chr7_2	exon	71315455	71316247	71315455	ID=Msa1073670-mRNA-1:exon:16136;Parent=Msa1073670-mRNA-1
chr7_2	five_prime_UTR	71312114	71312290	71312114	ID=Msa1073670-mRNA-1:five_prime_utr;Parent=Msa1073670-mRNA-1
chr7_2	five_prime_UTR	71312949	71312986	71312949	ID=Msa1073670-mRNA-1:five_prime_utr;Parent=Msa1073670-mRNA-1
chr7_2	CDS	71312987	71314018	71312987	ID=Msa1073670-mRNA-1:cds;Parent=Msa1073670-mRNA-1
chr7_2	CDS	71315455	71315856	71315455	ID=Msa1073670-mRNA-1:cds;Parent=Msa1073670-mRNA-1
chr7_2	three_prime_UTR	71315857	71316247	71315857	ID=Msa1073670-mRNA-1:three_prime_utr;Parent=Msa1073670-mRNA-1

Gene Sequence

>Msa1073670

ATGGCTCAATTGCTATCATCTTCTTGCTCCTTGACTTTCTCCGCTTCAAACAAACCTTGTTTAAAACCTTTTCACCAATGCTCAACATCATTTTATAACACGGTTGTTTTTGATAACTCCAAAACTCCATTTAGACGGCTTTTCTTGCGAGAACAGAAACCAAGGAAAAGTTTGGCAGTTGTAAATGCTTCTACAGTTTCAACTGGCCAGGAAGCCCCGGTTCAAACTAGTTCTGGCGACCCTTTTAAACCGAAGCGAGTAATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCCCTCCACCTTTCTAACAAAGGTTACGAGGTTGCCATTGTTGACAACCTTGTTCGACGTCTTTTTGATCACCAGCTTGGACTAGATTCTCTCACACCAATTTCCTCCATCCAGGATCGCATTCAGTGTTGGAAATCTCTCACTGGGAAAAGTATTGAGCTATACATTGGTGATATATGTGAGTTTGAGTTCTTATCCGAAACCTTCAAGTCCTATGAGCCTGATGCTGTTGTCCATTTCGGGGAACAGCGATCCGCTCCTTACTCTATGATAGACCGGTCAAGAGCTGTGTATACACAGCAAAACAATGTTGTCGGGACACTGAACGTGCTCTTTGCTATAAAAGAGTACAGAGAGGATTGTCATCTAGTCAAGCTTGGGACAATGGGTGAATACGGAACTCCAAATATTGATATTGAGGAAGGTTATATTACCATCACTCACAACGGAAGGACAGACACTTTGCCGTATCCAAAGCAAGCTAGCTCATTTTATCATTTAAGCAAGGTACATGATTCCCATAACATAGCTTTCACTTGCAAAGCTTGGGGGATTCGGGCAACTGATCTGAATCAAGGAGTGGTATATGGGGTAAGAACAGATGAAACTGCAATGCATGAAGAGTTGTGTAACAGGTTTGACTATGATGCAATATTTGGAACTGCATTGAATCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCACTCACTGTATATGGTAAAGGAGGCCAGACTAGGGCCTTCCTTGACATAAGAGATACAGTTCAATGTGTTGAGCTTGCCATTGCAAACCCGGCTAACCCTGGAGAGTTCCGAGTCTTCAATCAATTTACTGAGCAATTTAAAGTGACTGAACTAGCTGAGCTTGTTACGAAAGCTGGTGAGAAGTTGGGCCTTGATGTGAAAACCATATCAGTGCCTAACCCTAGAGTGGAGTTAGAGGAGCATTATTACAACTGCAAAAACACTAAACTAGTTGATCTTGGACTCAAGCCACACTTTCTTTCAGATTCTCTCATTGATTCACTGCTTAACTTTGCGGTTCAGTACAAAGACCGGGTTGACACTAAGCAAATTATGCCTGGTGTTTCTTGGAGAAAGGTTGGGGTCAAAACAAAAACTCTTTCATCCTAA

Protein sequence

>Msa1073670

MAQLLSSSCSLTFSASNKPCLKPFHQCSTSFYNTVVFDNSKTPFRRLFLREQKPRKSLAVVNASTVSTGQEAPVQTSSGDPFKPKRVMVIGGDGYCGWATALHLSNKGYEVAIVDNLVRRLFDHQLGLDSLTPISSIQDRIQCWKSLTGKSIELYIGDICEFEFLSETFKSYEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVVGTLNVLFAIKEYREDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRFDYDAIFGTALNRFCVQAAVGHPLTVYGKGGQTRAFLDIRDTVQCVELAIANPANPGEFRVFNQFTEQFKVTELAELVTKAGEKLGLDVKTISVPNPRVELEEHYYNCKNTKLVDLGLKPHFLSDSLIDSLLNFAVQYKDRVDTKQIMPGVSWRKVGVKTKTLSS*