AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400830 MtrunA17_Chr4g0043331 97.938 291 6 0 1 291 1 291 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400830 AT4G26370.1 68.807 218 65 1 66 283 69 283 3.25e-104 306
Msa1400830 AT4G26370.2 60.000 115 43 1 66 180 69 180 1.74e-35 128
Msa1400830 AT4G26370.3 60.000 115 43 1 66 180 69 180 1.74e-35 128

Find 120 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTTGGGAAGGAATT+TGG 0.119074 tig0022477:+44255 None:intergenic
TGTTGAACCATTATTATTAT+AGG 0.182688 tig0022477:-39421 Msa1400830:three_prime_UTR
TGAAGTAGCGGTGTTAATTT+TGG 0.202201 tig0022477:+44237 None:intergenic
TTGGGTTTGGGAAGGAATTT+GGG 0.203019 tig0022477:+44256 None:intergenic
GGAGAAAAGGAGCAATAATT+TGG 0.209267 tig0022477:+39149 None:intergenic
ATTTGGAGGCATCAAATAAT+AGG 0.245346 tig0022477:-39555 Msa1400830:CDS
ATTTCGTGTACCTGCCAATT+TGG 0.250481 tig0022477:+41644 None:intergenic
GGGATAGTGATAGTGGGATT+TGG 0.259441 tig0022477:+39170 None:intergenic
GGATAGTGATAGTGGGATTT+GGG 0.261084 tig0022477:+39171 None:intergenic
TTATTATAGGTTTCTGCAAC+TGG 0.299436 tig0022477:-39408 Msa1400830:three_prime_UTR
TCATCTGTTTCAACGATAAC+AGG 0.318092 tig0022477:+43755 None:intergenic
ACAAAGTTATCCCACCAAAT+TGG 0.319429 tig0022477:-41658 Msa1400830:CDS
GCAAAAGCGGTGGTTGAGTT+TGG 0.331587 tig0022477:+44321 None:intergenic
AATCTGCTATATACCAGCTT+TGG 0.334078 tig0022477:+41981 None:intergenic
TGGTTGCTGTCAGGGATAGA+TGG 0.336054 tig0022477:-41703 Msa1400830:CDS
TATAATTTATGCTTCGTGTT+TGG 0.348060 tig0022477:-43972 Msa1400830:CDS
GATTTCCCACAAGTTTATTA+CGG 0.351707 tig0022477:-39329 Msa1400830:three_prime_UTR
GCAGCCCCTCGTATCATTAA+TGG 0.354885 tig0022477:-39601 Msa1400830:CDS
TGCTTCGTGTTTGGAGGGAT+TGG 0.362504 tig0022477:-43963 Msa1400830:CDS
AAGAAGCTAATGAACTTCTA+AGG 0.369066 tig0022477:-43733 Msa1400830:CDS
AGAGAGCATTTCAGAGATAA+AGG 0.376806 tig0022477:+44211 None:intergenic
GCAGAAACCTATAATAATAA+TGG 0.383326 tig0022477:+39414 None:intergenic
ATCTGCTATATACCAGCTTT+GGG 0.384978 tig0022477:+41982 None:intergenic
ATTTCCCACAAGTTTATTAC+GGG 0.392155 tig0022477:-39328 Msa1400830:three_prime_UTR
TTTGGAGGCATCAAATAATA+GGG 0.397760 tig0022477:-39554 Msa1400830:CDS
GAGAAAAGGAGCAATAATTT+GGG 0.402819 tig0022477:+39150 None:intergenic
GAGTATAATCACATGAGTTT+CGG 0.405577 tig0022477:-43785 Msa1400830:CDS
GTTAATGACGATTTGGTGTC+TGG 0.417195 tig0022477:+39929 None:intergenic
GGAAACTATTGGTTGCTGTC+AGG 0.418304 tig0022477:-41712 Msa1400830:CDS
GTACCTCGTTAATGACGATT+TGG 0.422385 tig0022477:+39922 None:intergenic
ATTTAACAAGGACAAATTGT+TGG 0.439004 tig0022477:-43807 Msa1400830:CDS
TGGAGGGATTGGACCCGGTT+CGG 0.439014 tig0022477:-43952 Msa1400830:CDS
CAGGTTCACTAGGAAACTAT+TGG 0.442129 tig0022477:-41723 Msa1400830:CDS
AATATGCAATTATTACTAGT+TGG 0.448256 tig0022477:+39257 None:intergenic
AATTTATGCTTCGTGTTTGG+AGG 0.449542 tig0022477:-43969 Msa1400830:CDS
ATAATTTGGGATAGTGATAG+TGG 0.451378 tig0022477:+39163 None:intergenic
GATAGTGGGATTTGGGATAG+TGG 0.452344 tig0022477:+39178 None:intergenic
AGAAGTTGAAGGTGAAGAGA+GGG 0.454774 tig0022477:+44348 None:intergenic
CGTTTCTCAAATAACCGAAC+CGG 0.455058 tig0022477:+43938 None:intergenic
GTCTTTGTCGAGTGCTAAAG+TGG 0.463142 tig0022477:+44180 None:intergenic
AGGTGAAGAGAGGGGAAGTA+AGG 0.465052 tig0022477:+44357 None:intergenic
AAGAAGTTGAAGGTGAAGAG+AGG 0.465590 tig0022477:+44347 None:intergenic
GGGATAACTTTGTTAATGAC+AGG 0.468047 tig0022477:+41668 None:intergenic
ATTCAACTCGAGTCTGCAAT+TGG 0.472202 tig0022477:-43707 Msa1400830:intron
GCAATTATTACTAGTTGGAT+AGG 0.481035 tig0022477:+39262 None:intergenic
TCGTGTACCTGCCAATTTGG+TGG 0.485420 tig0022477:+41647 None:intergenic
GTAGGAGTTATGTTTGAAAG+TGG 0.491262 tig0022477:-39374 Msa1400830:three_prime_UTR
GAAACTATTGGTTGCTGTCA+GGG 0.496002 tig0022477:-41711 Msa1400830:CDS
ATAGTGGGATTTGGGATAGT+GGG 0.497089 tig0022477:+39179 None:intergenic
TATTGTTATGAAATAATTGA+TGG 0.498347 tig0022477:-39238 Msa1400830:three_prime_UTR
GTGTTTGGAGGGATTGGACC+CGG 0.500612 tig0022477:-43957 Msa1400830:CDS
CGTGTACCTGCCAATTTGGT+GGG 0.500976 tig0022477:+41648 None:intergenic
TTGCCTAAACTCGATAAAAC+CGG 0.503153 tig0022477:-44115 Msa1400830:CDS
AGAGCTTTCTATTCTTCACT+TGG 0.503711 tig0022477:-39979 Msa1400830:CDS
GGGGAAAAGCAATGGAAAGA+AGG 0.507289 tig0022477:+39200 None:intergenic
GCATCCCGTAATAAACTTGT+GGG 0.507291 tig0022477:+39324 None:intergenic
TGGTGGTTTAGTAGTGAAGA+GGG 0.509590 tig0022477:+44295 None:intergenic
TAACTTATCAGACCAGCATA+GGG 0.513184 tig0022477:+39450 None:intergenic
GGAAGTGAGAGTAGCGGTGG+TGG 0.515094 tig0022477:+44278 None:intergenic
CTAACTTATCAGACCAGCAT+AGG 0.518019 tig0022477:+39449 None:intergenic
CGGTTCGGTTATTTGAGAAA+CGG 0.523373 tig0022477:-43937 Msa1400830:CDS
AGGCGGTGGATCTGGCTAAA+CGG 0.525821 tig0022477:-39636 Msa1400830:CDS
ATTTATGCTTCGTGTTTGGA+GGG 0.526272 tig0022477:-43968 Msa1400830:CDS
AGCTCTAGAATCTTCCCTGC+TGG 0.531317 tig0022477:+39996 None:intergenic
TGCATCCCGTAATAAACTTG+TGG 0.533013 tig0022477:+39323 None:intergenic
CTGGCTAAACGGTTCTGTGA+TGG 0.535411 tig0022477:-39625 Msa1400830:CDS
GCAAGTTCTCTAGCGGCTCT+CGG 0.536127 tig0022477:+44079 None:intergenic
TATTTGATGCCTCCAAATCT+CGG 0.536490 tig0022477:+39560 None:intergenic
AGTTTGGAAGAAGAAGTTGA+AGG 0.542605 tig0022477:+44337 None:intergenic
TTGAGTAATATCCCCTATGC+TGG 0.546544 tig0022477:-39462 Msa1400830:three_prime_UTR
GTCATATCTGCAGGTTCACT+AGG 0.549643 tig0022477:-41733 Msa1400830:intron
GGTTGCTGTCAGGGATAGAT+GGG 0.555102 tig0022477:-41702 Msa1400830:CDS
TCTACTCCACACTTCAACAA+TGG 0.555760 tig0022477:-44386 Msa1400830:exon
TGGTTGATGAACTTTAGTCT+TGG 0.562941 tig0022477:-39354 Msa1400830:three_prime_UTR
GCATTCCAGGAAGAACCAGC+AGG 0.565802 tig0022477:-40011 Msa1400830:intron
CTCCCTCCATTGTTGAAGTG+TGG 0.566513 tig0022477:+44380 None:intergenic
CTGCTATATACCAGCTTTGG+GGG 0.567625 tig0022477:+41984 None:intergenic
GAAAAGCAATGGAAAGAAGG+TGG 0.573319 tig0022477:+39203 None:intergenic
GAAGTTGAAGGTGAAGAGAG+GGG 0.577370 tig0022477:+44349 None:intergenic
TATTATAGGTTTCTGCAACT+GGG 0.582646 tig0022477:-39407 Msa1400830:three_prime_UTR
TGTTATGAAATAATTGATGG+TGG 0.583782 tig0022477:-39235 Msa1400830:three_prime_UTR
AGTTATCCCACCAAATTGGC+AGG 0.586746 tig0022477:-41654 Msa1400830:intron
GATTGTTGAAAATATTGATG+TGG 0.586916 tig0022477:-39487 Msa1400830:three_prime_UTR
TATAATCACATGAGTTTCGG+AGG 0.587444 tig0022477:-43782 Msa1400830:CDS
CTCCACACTTCAACAATGGA+GGG 0.590137 tig0022477:-44382 Msa1400830:exon
AAAAGCAATGGAAAGAAGGT+GGG 0.591281 tig0022477:+39204 None:intergenic
AGTGTGGAGTAGATAGATAA+CGG 0.591828 tig0022477:+44396 None:intergenic
GTGGTGGTTTAGTAGTGAAG+AGG 0.591941 tig0022477:+44294 None:intergenic
TAGTGGGATTTGGGATAGTG+GGG 0.595991 tig0022477:+39180 None:intergenic
TAATTTGGGATAGTGATAGT+GGG 0.596392 tig0022477:+39164 None:intergenic
AGCAATGGAAAGAAGGTGGG+TGG 0.604838 tig0022477:+39207 None:intergenic
TGGGTTTGGGAAGGAATTTG+GGG 0.610576 tig0022477:+44257 None:intergenic
ACTCCACACTTCAACAATGG+AGG 0.611176 tig0022477:-44383 Msa1400830:exon
TGGGGAAGTGAGAGTAGCGG+TGG 0.615693 tig0022477:+44275 None:intergenic
CAACTGGGAAGATCATAAGT+AGG 0.620936 tig0022477:-39392 Msa1400830:three_prime_UTR
GTGAAGAGGGGAAGCAAAAG+CGG 0.626097 tig0022477:+44308 None:intergenic
GCAATGGAAAGAAGGTGGGT+GGG 0.628138 tig0022477:+39208 None:intergenic
GGTGGTTTAGTAGTGAAGAG+GGG 0.629211 tig0022477:+44296 None:intergenic
GACAGCCATTAATGATACGA+GGG 0.631693 tig0022477:+39596 None:intergenic
GGTTGGTTATGAATTTAACA+AGG 0.642550 tig0022477:-43819 Msa1400830:CDS
TCTGCTATATACCAGCTTTG+GGG 0.649992 tig0022477:+41983 None:intergenic
TCTGTTTCAACGATAACAGG+TGG 0.649999 tig0022477:+43758 None:intergenic
ATTTGGGGAAGTGAGAGTAG+CGG 0.651966 tig0022477:+44272 None:intergenic
GGATAACTTTGTTAATGACA+GGG 0.657385 tig0022477:+41669 None:intergenic
AGATAAAGGTGATGAAGTAG+CGG 0.660310 tig0022477:+44225 None:intergenic
TCTCGGACTACAAAACCGAC+CGG 0.664343 tig0022477:+44096 None:intergenic
ATAATCACATGAGTTTCGGA+GGG 0.671556 tig0022477:-43781 Msa1400830:CDS
AGTGGGATTTGGGATAGTGG+GGG 0.671838 tig0022477:+39181 None:intergenic
TTACAGAGCAAGTTCTCTAG+CGG 0.672676 tig0022477:+44072 None:intergenic
GTTTCTCAAATAACCGAACC+GGG 0.676933 tig0022477:+43939 None:intergenic
CATTCCAGGAAGAACCAGCA+GGG 0.678311 tig0022477:-40010 Msa1400830:intron
TCTCTGAAATGCTCTCTCCG+TGG 0.679129 tig0022477:-44205 Msa1400830:CDS
AGACAGCCATTAATGATACG+AGG 0.681753 tig0022477:+39595 None:intergenic
AAACGGATGAATGAGCGTAG+AGG 0.681961 tig0022477:-43920 Msa1400830:intron
AACTTATCAGACCAGCATAG+GGG 0.689195 tig0022477:+39451 None:intergenic
CTAAACTCGATAAAACCGGT+CGG 0.694768 tig0022477:-44111 Msa1400830:CDS
CGAGTGCTAAAGTGGAACCA+CGG 0.698369 tig0022477:+44188 None:intergenic
AAGAGGGGAAGCAAAAGCGG+TGG 0.698794 tig0022477:+44311 None:intergenic
ACAGCCATTAATGATACGAG+GGG 0.715241 tig0022477:+39597 None:intergenic
ACACCAAATCGTCATTAACG+AGG 0.730395 tig0022477:-39925 Msa1400830:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTTAAAAAATTCA+TGG + tig0022477:40574-40593 None:intergenic 10.0%
!!! ATTTATAGTGATTTTTATAT+TGG - tig0022477:41132-41151 Msa1400830:intron 10.0%
!! ATAATAAAAACAAAAAATTG+GGG + tig0022477:43225-43244 None:intergenic 10.0%
!! CAATAATAAAAACAAAAAAT+TGG + tig0022477:43227-43246 None:intergenic 10.0%
!!! CAATTTTTTGTTTTTATTAT+TGG - tig0022477:43225-43244 Msa1400830:intron 10.0%
!!! CTTTTTATTTTTATTTTTGT+AGG - tig0022477:43685-43704 Msa1400830:intron 10.0%
!! TCATTACTAATATATATGAT+TGG - tig0022477:39954-39973 Msa1400830:CDS 15.0%
!!! TTAATTAAAACATTTTAAGC+TGG + tig0022477:40301-40320 None:intergenic 15.0%
!!! TAGTTATAAGGATTAATTTT+GGG + tig0022477:40333-40352 None:intergenic 15.0%
!! AGAAAATCATATTGTAATTA+GGG + tig0022477:40769-40788 None:intergenic 15.0%
!! AAGAAAATCATATTGTAATT+AGG + tig0022477:40770-40789 None:intergenic 15.0%
!! AATGTATGATTAATTGATTA+TGG - tig0022477:41366-41385 Msa1400830:intron 15.0%
!!! TATCTTATTTCATAGATTTT+TGG - tig0022477:42013-42032 Msa1400830:intron 15.0%
!!! TTGTTTTTATTATTGGATAA+TGG - tig0022477:43232-43251 Msa1400830:intron 15.0%
!!! ATATACATTTGTTAATTATG+TGG - tig0022477:43366-43385 Msa1400830:intron 15.0%
!! ATAAAAAAACTTATATACTG+TGG - tig0022477:43887-43906 Msa1400830:intron 15.0%
!! TATTGTTATGAAATAATTGA+TGG - tig0022477:44322-44341 Msa1400830:CDS 15.0%
!!! AATGTGTTTGTTTTTTATAG+AGG - tig0022477:39720-39739 Msa1400830:intron 20.0%
!!! TTTCATTTGTTAATTGATTG+AGG - tig0022477:40053-40072 Msa1400830:intron 20.0%
!!! GTAGTTATAAGGATTAATTT+TGG + tig0022477:40334-40353 None:intergenic 20.0%
!! AATTAATCCTTATAACTACT+TGG - tig0022477:40335-40354 Msa1400830:intron 20.0%
!! TTCTTGATTCAACTTAAATT+TGG + tig0022477:40599-40618 None:intergenic 20.0%
!!! ACTATAAATTTTTGTTCTCA+TGG + tig0022477:41121-41140 None:intergenic 20.0%
!!! ATTGTTCTGTTTTCATTTTA+CGG - tig0022477:41277-41296 Msa1400830:intron 20.0%
!! ATTTATACAGACTTTAATAC+AGG - tig0022477:41322-41341 Msa1400830:intron 20.0%
!! TGAAATTATGTGACATAATA+AGG + tig0022477:41425-41444 None:intergenic 20.0%
!!! GAACTTTGAAATTCTAATTA+TGG + tig0022477:42183-42202 None:intergenic 20.0%
!!! AAAATAATAATGAGGTACTA+AGG + tig0022477:42486-42505 None:intergenic 20.0%
!! TGGTACTAAAAATAATAATG+AGG + tig0022477:42494-42513 None:intergenic 20.0%
!!! TATTATTTTTAGTACCAAAC+AGG - tig0022477:42497-42516 Msa1400830:intron 20.0%
!!! ATTATTTTTAGTACCAAACA+GGG - tig0022477:42498-42517 Msa1400830:intron 20.0%
!! ATCATTAAACAGTTATTGTT+GGG - tig0022477:42695-42714 Msa1400830:intron 20.0%
!! TAATAGAACATTGGAAATTT+AGG - tig0022477:42744-42763 Msa1400830:intron 20.0%
!! AGAATAAGAATGAAACTATT+TGG + tig0022477:42776-42795 None:intergenic 20.0%
!! TTAAACCAGTAAAAATACAA+AGG + tig0022477:43115-43134 None:intergenic 20.0%
!! AAAATGTTTATCAAATGTCA+AGG - tig0022477:43281-43300 Msa1400830:intron 20.0%
!! CATTATCATTACGTAAAATT+TGG + tig0022477:43338-43357 None:intergenic 20.0%
!!! TTTTTATTTTTGTAGGTGTT+AGG - tig0022477:43692-43711 Msa1400830:intron 20.0%
!!! TTTTATTTTTGTAGGTGTTA+GGG - tig0022477:43693-43712 Msa1400830:intron 20.0%
!!! ATGTCAATTTTTTCTACTAT+TGG - tig0022477:43741-43760 Msa1400830:CDS 20.0%
!! TGTTGAACCATTATTATTAT+AGG - tig0022477:44139-44158 Msa1400830:CDS 20.0%
!!! AGCATTATTTTCAAAATTCA+AGG - tig0022477:44275-44294 Msa1400830:CDS 20.0%
!! AATATGCAATTATTACTAGT+TGG + tig0022477:44306-44325 None:intergenic 20.0%
!! GTATTTGGAATTAACGTTAA+CGG - tig0022477:39547-39566 Msa1400830:exon 25.0%
! TATAATTTATGCTTCGTGTT+TGG - tig0022477:39588-39607 Msa1400830:CDS 25.0%
!!! ATTGTTAACTGTTTTGGTTT+TGG - tig0022477:39665-39684 Msa1400830:intron 25.0%
!!! TGTTTGTTTTTTATAGAGGT+TGG - tig0022477:39724-39743 Msa1400830:intron 25.0%
! ATTTAACAAGGACAAATTGT+TGG - tig0022477:39753-39772 Msa1400830:intron 25.0%
! TGCTCAAATTTGAACTTAAT+TGG - tig0022477:39991-40010 Msa1400830:CDS 25.0%
!!! ATTTGAACTTAATTGGTCTT+TGG - tig0022477:39998-40017 Msa1400830:CDS 25.0%
! ATCGGTCATTTCTTTATATA+TGG - tig0022477:40028-40047 Msa1400830:intron 25.0%
! TTGTTTATACATGACACATA+TGG - tig0022477:40635-40654 Msa1400830:intron 25.0%
! ATAATCCAAGTTCTATATGT+CGG + tig0022477:40707-40726 None:intergenic 25.0%
! AATCATATTGTAATTAGGGA+AGG + tig0022477:40765-40784 None:intergenic 25.0%
! AAACCTAAAAAAACCCTAAT+TGG + tig0022477:40900-40919 None:intergenic 25.0%
! TTTATATGTAGTGTACTGAA+TGG + tig0022477:40979-40998 None:intergenic 25.0%
! TTAATCTGTCATAGATATAC+AGG + tig0022477:41303-41322 None:intergenic 25.0%
! ATTATGTGACATAATAAGGA+AGG + tig0022477:41421-41440 None:intergenic 25.0%
! AGAATATAACAAGTCACAAA+AGG + tig0022477:41524-41543 None:intergenic 25.0%
!!! TATATAGCAGATTGATTTTG+AGG - tig0022477:41589-41608 Msa1400830:intron 25.0%
! ATGCATGCATTATATGTAAA+GGG + tig0022477:41625-41644 None:intergenic 25.0%
! AAATGTTAGAAATGTTAGTG+AGG - tig0022477:41751-41770 Msa1400830:intron 25.0%
! AATGTTAGAAATGTTAGTGA+GGG - tig0022477:41752-41771 Msa1400830:intron 25.0%
!! ATCTATTGCTTCATTTTGTT+CGG + tig0022477:41980-41999 None:intergenic 25.0%
! AAAGTAGTCATTATAAAGCT+TGG + tig0022477:42086-42105 None:intergenic 25.0%
!! AAGCTTTATAATGACTACTT+TGG - tig0022477:42085-42104 Msa1400830:intron 25.0%
! TAATTATGGCATTGTTTCAA+AGG + tig0022477:42169-42188 None:intergenic 25.0%
! ATTGTTCAAGATAATGTGTA+AGG + tig0022477:42324-42343 None:intergenic 25.0%
!! TTAGGGATTATATCCTATTT+TGG + tig0022477:42570-42589 None:intergenic 25.0%
!!! TGATTTGTTAGTTGTTTCTT+AGG + tig0022477:42595-42614 None:intergenic 25.0%
!!! AGTGTTTTGTTGGATTTATT+GGG - tig0022477:42672-42691 Msa1400830:intron 25.0%
! GATCATTAAACAGTTATTGT+TGG - tig0022477:42694-42713 Msa1400830:intron 25.0%
! ATGATGAGTTAATAGAACAT+TGG - tig0022477:42735-42754 Msa1400830:intron 25.0%
! AGAAACAATCAACCTAAAAA+TGG + tig0022477:43032-43051 None:intergenic 25.0%
! TGTTTCTCAAATTGTCTTAT+CGG - tig0022477:43045-43064 Msa1400830:intron 25.0%
!!! AGATACCTTTGTATTTTTAC+TGG - tig0022477:43107-43126 Msa1400830:intron 25.0%
! ATAAAAACAAAAAATTGGGG+TGG + tig0022477:43222-43241 None:intergenic 25.0%
! TAAAATTATACAAGTGTGAG+TGG + tig0022477:43475-43494 None:intergenic 25.0%
!! TAGACAACTTTGTTTGTTAA+TGG - tig0022477:43500-43519 Msa1400830:intron 25.0%
! AACAAACAATATGCATACTA+TGG + tig0022477:43526-43545 None:intergenic 25.0%
! ATAGTATGCATATTGTTTGT+TGG - tig0022477:43525-43544 Msa1400830:intron 25.0%
!!! TTTATTTTTGTAGGTGTTAG+GGG - tig0022477:43694-43713 Msa1400830:intron 25.0%
! GATTGTTGAAAATATTGATG+TGG - tig0022477:44073-44092 Msa1400830:intron 25.0%
! GCAGAAACCTATAATAATAA+TGG + tig0022477:44149-44168 None:intergenic 25.0%
! TGTTATGAAATAATTGATGG+TGG - tig0022477:44325-44344 Msa1400830:CDS 25.0%
!! GTGTACTGCATTTTAGTATT+TGG - tig0022477:39532-39551 Msa1400830:exon 30.0%
! GAGGTAATTGTTAACTGTTT+TGG - tig0022477:39659-39678 Msa1400830:intron 30.0%
! GGTTGGTTATGAATTTAACA+AGG - tig0022477:39741-39760 Msa1400830:intron 30.0%
GAGTATAATCACATGAGTTT+CGG - tig0022477:39775-39794 Msa1400830:intron 30.0%
AAGAAGCTAATGAACTTCTA+AGG - tig0022477:39827-39846 Msa1400830:intron 30.0%
!! TTGGTCTTTGGAATGAAAAT+CGG - tig0022477:40010-40029 Msa1400830:intron 30.0%
TGTCCAAATGAATAAGACTT+AGG - tig0022477:40141-40160 Msa1400830:intron 30.0%
!! AGTCCTAAGTCTTATTCATT+TGG + tig0022477:40147-40166 None:intergenic 30.0%
AATGAATAAGACTTAGGACT+AGG - tig0022477:40147-40166 Msa1400830:intron 30.0%
ATGAATAAGACTTAGGACTA+GGG - tig0022477:40148-40167 Msa1400830:intron 30.0%
! TAAAACATTTTAAGCTGGTG+TGG + tig0022477:40296-40315 None:intergenic 30.0%
GAAAATCAACAAAGCAAAGA+GGG + tig0022477:40423-40442 None:intergenic 30.0%
TGAAAATCAACAAAGCAAAG+AGG + tig0022477:40424-40443 None:intergenic 30.0%
! AACTTATAATGACTGGTTGT+GGG + tig0022477:40504-40523 None:intergenic 30.0%
ACGACAGTTAACAATTACTA+CGG + tig0022477:40671-40690 None:intergenic 30.0%
TTTAACCGACATATAGAACT+TGG - tig0022477:40699-40718 Msa1400830:intron 30.0%
ACTATTAAGCGTGTGATAAA+TGG + tig0022477:40795-40814 None:intergenic 30.0%
TATAAATTGAACTCCTTGTG+TGG - tig0022477:40993-41012 Msa1400830:intron 30.0%
! CAACATCAAACTTTTTACCT+TGG - tig0022477:41058-41077 Msa1400830:intron 30.0%
AAAGTTTGATGTTGTCTCAT+GGG + tig0022477:41086-41105 None:intergenic 30.0%
AAAAGTTTGATGTTGTCTCA+TGG + tig0022477:41087-41106 None:intergenic 30.0%
! CAACATCAAACTTTTTACCT+TGG - tig0022477:41058-41077 Msa1400830:intron 30.0%
AGCAATTTGATGTTGTAAGT+TGG - tig0022477:41181-41200 Msa1400830:intron 30.0%
TCCTTAGAACTACTACTTTA+AGG + tig0022477:41207-41226 None:intergenic 30.0%
!! TTAAAGTAGTAGTTCTAAGG+AGG - tig0022477:41206-41225 Msa1400830:intron 30.0%
!! TAAAGTAGTAGTTCTAAGGA+GGG - tig0022477:41207-41226 Msa1400830:intron 30.0%
GATGCATGCATTATATGTAA+AGG + tig0022477:41626-41645 None:intergenic 30.0%
ATGTTAGAAATGTTAGTGAG+GGG - tig0022477:41753-41772 Msa1400830:intron 30.0%
! TATTAGCTTCCATTGGAATA+AGG + tig0022477:41795-41814 None:intergenic 30.0%
GGATAACTTTGTTAATGACA+GGG + tig0022477:41894-41913 None:intergenic 30.0%
!! CTAACTCAGAATTTTGAGTA+GGG + tig0022477:42044-42063 None:intergenic 30.0%
! TGCCACATTGACTAAAAATA+TGG + tig0022477:42111-42130 None:intergenic 30.0%
AAAGGATGATAAAGATAGCA+GGG + tig0022477:42151-42170 None:intergenic 30.0%
! AGACATAATTTGTCTAGAGT+TGG - tig0022477:42213-42232 Msa1400830:intron 30.0%
! GACATAATTTGTCTAGAGTT+GGG - tig0022477:42214-42233 Msa1400830:intron 30.0%
!! TAGGTTGAACAGTTTTAACA+TGG + tig0022477:42258-42277 None:intergenic 30.0%
CTGTTCAACCTAAATTTACA+AGG - tig0022477:42266-42285 Msa1400830:intron 30.0%
GCATATAAAACCAAAGTCAA+AGG + tig0022477:42421-42440 None:intergenic 30.0%
! TTATATGCTCTCTGAAGAAA+AGG - tig0022477:42433-42452 Msa1400830:intron 30.0%
! AATAATGAGGTACTAAGGAT+GGG + tig0022477:42481-42500 None:intergenic 30.0%
! TAATAATGAGGTACTAAGGA+TGG + tig0022477:42482-42501 None:intergenic 30.0%
AGAATAGGGTTACCTTAATA+AGG + tig0022477:42529-42548 None:intergenic 30.0%
TCTCATTCCAGTATAGAATA+GGG + tig0022477:42543-42562 None:intergenic 30.0%
ATCTCATTCCAGTATAGAAT+AGG + tig0022477:42544-42563 None:intergenic 30.0%
GGAATGAGATAATCCAAAAT+AGG - tig0022477:42554-42573 Msa1400830:intron 30.0%
!! TAGTTGTTTCTTAGGAGTTA+GGG + tig0022477:42587-42606 None:intergenic 30.0%
!! TTAGTTGTTTCTTAGGAGTT+AGG + tig0022477:42588-42607 None:intergenic 30.0%
AACCTTAATTACTGATCAGT+TGG - tig0022477:42617-42636 Msa1400830:intron 30.0%
GATCATGTTGGAAATAGTAA+TGG - tig0022477:42644-42663 Msa1400830:intron 30.0%
!! AATGGTATTGAGTGTTTTGT+TGG - tig0022477:42662-42681 Msa1400830:intron 30.0%
!! GAGTGTTTTGTTGGATTTAT+TGG - tig0022477:42671-42690 Msa1400830:intron 30.0%
TAAATGCAGTTAAATTCAGC+CGG - tig0022477:42826-42845 Msa1400830:intron 30.0%
!! TACAGTACACTACCATTTTT+AGG - tig0022477:43017-43036 Msa1400830:intron 30.0%
TTATCGGTCATCTAGTATAT+TGG - tig0022477:43061-43080 Msa1400830:intron 30.0%
!! ATAATGGATATGCGTACATA+AGG - tig0022477:43248-43267 Msa1400830:intron 30.0%
! GAGCTATATTTTCTGCTTAA+TGG + tig0022477:43792-43811 None:intergenic 30.0%
! AAGCAGAAAATATAGCTCTA+AGG - tig0022477:43794-43813 Msa1400830:CDS 30.0%
!! AGCAGAAAATATAGCTCTAA+GGG - tig0022477:43795-43814 Msa1400830:CDS 30.0%
!! ATTTGGAGGCATCAAATAAT+AGG - tig0022477:44005-44024 Msa1400830:intron 30.0%
!! TTTGGAGGCATCAAATAATA+GGG - tig0022477:44006-44025 Msa1400830:intron 30.0%
TTATTATAGGTTTCTGCAAC+TGG - tig0022477:44152-44171 Msa1400830:CDS 30.0%
TATTATAGGTTTCTGCAACT+GGG - tig0022477:44153-44172 Msa1400830:CDS 30.0%
GATTTCCCACAAGTTTATTA+CGG - tig0022477:44231-44250 Msa1400830:CDS 30.0%
ATTTCCCACAAGTTTATTAC+GGG - tig0022477:44232-44251 Msa1400830:CDS 30.0%
GCAATTATTACTAGTTGGAT+AGG + tig0022477:44301-44320 None:intergenic 30.0%
! TAATTTGGGATAGTGATAGT+GGG + tig0022477:44399-44418 None:intergenic 30.0%
! ATAATTTGGGATAGTGATAG+TGG + tig0022477:44400-44419 None:intergenic 30.0%
AGTGTGGAGTAGATAGATAA+CGG + tig0022477:39167-39186 None:intergenic 35.0%
AGTTTGGAAGAAGAAGTTGA+AGG + tig0022477:39226-39245 None:intergenic 35.0%
!!! TGTTAATTTTGGGTTTGGGA+AGG + tig0022477:39315-39334 None:intergenic 35.0%
!! GAAGTAGCGGTGTTAATTTT+GGG + tig0022477:39325-39344 None:intergenic 35.0%
!! TGAAGTAGCGGTGTTAATTT+TGG + tig0022477:39326-39345 None:intergenic 35.0%
AGATAAAGGTGATGAAGTAG+CGG + tig0022477:39338-39357 None:intergenic 35.0%
!! AGAGAGCATTTCAGAGATAA+AGG + tig0022477:39352-39371 None:intergenic 35.0%
TTGCCTAAACTCGATAAAAC+CGG - tig0022477:39445-39464 Msa1400830:three_prime_UTR 35.0%
!! TTAACGGTCTTTGATTTTGC+AGG - tig0022477:39563-39582 Msa1400830:CDS 35.0%
AATTTATGCTTCGTGTTTGG+AGG - tig0022477:39591-39610 Msa1400830:CDS 35.0%
ATTTATGCTTCGTGTTTGGA+GGG - tig0022477:39592-39611 Msa1400830:CDS 35.0%
!!! GTTTTGGTTTTGGTTGTTGT+TGG - tig0022477:39675-39694 Msa1400830:intron 35.0%
! TTTGGTTGTTGTTGGTATTG+TGG - tig0022477:39683-39702 Msa1400830:intron 35.0%
TATAATCACATGAGTTTCGG+AGG - tig0022477:39778-39797 Msa1400830:intron 35.0%
ATAATCACATGAGTTTCGGA+GGG - tig0022477:39779-39798 Msa1400830:intron 35.0%
TCATCTGTTTCAACGATAAC+AGG + tig0022477:39808-39827 None:intergenic 35.0%
TGAATAAGACTTAGGACTAG+GGG - tig0022477:40149-40168 Msa1400830:intron 35.0%
! ATGAAACTGTAGTTCTGTTG+CGG - tig0022477:40178-40197 Msa1400830:intron 35.0%
! GTGTAAAACTGTTTTACTCC+AGG + tig0022477:40234-40253 None:intergenic 35.0%
AGATAATATCGGATGGTGAT+TGG + tig0022477:40263-40282 None:intergenic 35.0%
GTGTGGCAAAGAGATAATAT+CGG + tig0022477:40274-40293 None:intergenic 35.0%
AGTAGAGCCAAGTAGTTATA+AGG + tig0022477:40345-40364 None:intergenic 35.0%
!!! ACTTGGCTCTACTGTATTTT+TGG - tig0022477:40352-40371 Msa1400830:intron 35.0%
TGAAAACGACACAGCAAATA+GGG + tig0022477:40394-40413 None:intergenic 35.0%
! CAACTTATAATGACTGGTTG+TGG + tig0022477:40505-40524 None:intergenic 35.0%
TGCTGACAACTTATAATGAC+TGG + tig0022477:40511-40530 None:intergenic 35.0%
ATTATAAGTTGTCAGCAGCA+CGG - tig0022477:40514-40533 Msa1400830:intron 35.0%
AGTTAACAATTACTACGGAG+GGG + tig0022477:40666-40685 None:intergenic 35.0%
CAGTTAACAATTACTACGGA+GGG + tig0022477:40667-40686 None:intergenic 35.0%
ACAGTTAACAATTACTACGG+AGG + tig0022477:40668-40687 None:intergenic 35.0%
GTAACATCTCCATAATCACT+AGG - tig0022477:40820-40839 Msa1400830:intron 35.0%
!!! TGGCCAATTAGGGTTTTTTT+AGG - tig0022477:40894-40913 Msa1400830:intron 35.0%
! TTTTGTTCTCATGGATACCA+AGG + tig0022477:41112-41131 None:intergenic 35.0%
! GCCTTAAAGTAGTAGTTCTA+AGG - tig0022477:41203-41222 Msa1400830:intron 35.0%
!! AAAGTAGTAGTTCTAAGGAG+GGG - tig0022477:41208-41227 Msa1400830:intron 35.0%
! ACCAAGTCAAAACTTTTCCT+GGG + tig0022477:41466-41485 None:intergenic 35.0%
! AACCAAGTCAAAACTTTTCC+TGG + tig0022477:41467-41486 None:intergenic 35.0%
ATCTGCTATATACCAGCTTT+GGG + tig0022477:41581-41600 None:intergenic 35.0%
AATCTGCTATATACCAGCTT+TGG + tig0022477:41582-41601 None:intergenic 35.0%
! GCTAGATTATTAGCTTCCAT+TGG + tig0022477:41802-41821 None:intergenic 35.0%
GGGATAACTTTGTTAATGAC+AGG + tig0022477:41895-41914 None:intergenic 35.0%
ACAAAGTTATCCCACCAAAT+TGG - tig0022477:41902-41921 Msa1400830:intron 35.0%
!! CCTAACTCAGAATTTTGAGT+AGG + tig0022477:42045-42064 None:intergenic 35.0%
CCTACTCAAAATTCTGAGTT+AGG - tig0022477:42042-42061 Msa1400830:intron 35.0%
TCAAAATTCTGAGTTAGGTC+TGG - tig0022477:42047-42066 Msa1400830:intron 35.0%
!!! GGCCATATTTTTAGTCAATG+TGG - tig0022477:42106-42125 Msa1400830:intron 35.0%
AGATAGCAGGGGTTAAATAA+TGG + tig0022477:42139-42158 None:intergenic 35.0%
AAGGATGATAAAGATAGCAG+GGG + tig0022477:42150-42169 None:intergenic 35.0%
CAAAGGATGATAAAGATAGC+AGG + tig0022477:42152-42171 None:intergenic 35.0%
GTCTCAGACCTTGTAAATTT+AGG + tig0022477:42277-42296 None:intergenic 35.0%
GTGTAAGGAAAAGACATAAC+AGG + tig0022477:42309-42328 None:intergenic 35.0%
AATAAAAGTCTCTTCCCACT+AGG - tig0022477:42341-42360 Msa1400830:intron 35.0%
! AAACCTTTTTGTCACCTAGT+GGG + tig0022477:42358-42377 None:intergenic 35.0%
! AAAACCTTTTTGTCACCTAG+TGG + tig0022477:42359-42378 None:intergenic 35.0%
! ACTAAGGATGGGTTTATGTT+AGG + tig0022477:42470-42489 None:intergenic 35.0%
! TAATAAGGTGTTTCCCTGTT+TGG + tig0022477:42514-42533 None:intergenic 35.0%
AACAGGGAAACACCTTATTA+AGG - tig0022477:42514-42533 Msa1400830:intron 35.0%
AAGGTAACCCTATTCTATAC+TGG - tig0022477:42533-42552 Msa1400830:intron 35.0%
CACCAACTGATCAGTAATTA+AGG + tig0022477:42622-42641 None:intergenic 35.0%
TAATACAAGTGCGACTGTAA+AGG + tig0022477:42960-42979 None:intergenic 35.0%
AGTTGGAATTCTCTTTGACT+TGG + tig0022477:43171-43190 None:intergenic 35.0%
TTCCAACTAAAGTTCGAGTA+TGG - tig0022477:43183-43202 Msa1400830:intron 35.0%
TAAATAGTTACAAGCAGCGA+GGG + tig0022477:43417-43436 None:intergenic 35.0%
ATAAATAGTTACAAGCAGCG+AGG + tig0022477:43418-43437 None:intergenic 35.0%
AATTATACAAGTGTGAGTGG+AGG + tig0022477:43472-43491 None:intergenic 35.0%
AGAGCTTTCTATTCTTCACT+TGG - tig0022477:43581-43600 Msa1400830:intron 35.0%
!!! CTGTGGTATGTTTGTTTTGA+AGG - tig0022477:43904-43923 Msa1400830:intron 35.0%
!!! TGGTATGTTTGTTTTGAAGG+CGG - tig0022477:43907-43926 Msa1400830:intron 35.0%
TATTTGATGCCTCCAAATCT+CGG + tig0022477:44003-44022 None:intergenic 35.0%
TAACTTATCAGACCAGCATA+GGG + tig0022477:44113-44132 None:intergenic 35.0%
GTAGGAGTTATGTTTGAAAG+TGG - tig0022477:44186-44205 Msa1400830:CDS 35.0%
!! TGGTTGATGAACTTTAGTCT+TGG - tig0022477:44206-44225 Msa1400830:CDS 35.0%
AAAAGCAATGGAAAGAAGGT+GGG + tig0022477:44359-44378 None:intergenic 35.0%
TCTACTCCACACTTCAACAA+TGG - tig0022477:39174-39193 Msa1400830:three_prime_UTR 40.0%
AGAAGTTGAAGGTGAAGAGA+GGG + tig0022477:39215-39234 None:intergenic 40.0%
AAGAAGTTGAAGGTGAAGAG+AGG + tig0022477:39216-39235 None:intergenic 40.0%
TGGTGGTTTAGTAGTGAAGA+GGG + tig0022477:39268-39287 None:intergenic 40.0%
TTGGGTTTGGGAAGGAATTT+GGG + tig0022477:39307-39326 None:intergenic 40.0%
! TTTGGGTTTGGGAAGGAATT+TGG + tig0022477:39308-39327 None:intergenic 40.0%
!!! GCGGTGTTAATTTTGGGTTT+GGG + tig0022477:39319-39338 None:intergenic 40.0%
!!! AGCGGTGTTAATTTTGGGTT+TGG + tig0022477:39320-39339 None:intergenic 40.0%
CTAAACTCGATAAAACCGGT+CGG - tig0022477:39449-39468 Msa1400830:three_prime_UTR 40.0%
TTACAGAGCAAGTTCTCTAG+CGG + tig0022477:39491-39510 None:intergenic 40.0%
GTTTCTCAAATAACCGAACC+GGG + tig0022477:39624-39643 None:intergenic 40.0%
CGTTTCTCAAATAACCGAAC+CGG + tig0022477:39625-39644 None:intergenic 40.0%
!! CGGTTCGGTTATTTGAGAAA+CGG - tig0022477:39623-39642 Msa1400830:CDS 40.0%
TCTGTTTCAACGATAACAGG+TGG + tig0022477:39805-39824 None:intergenic 40.0%
ATTCAACTCGAGTCTGCAAT+TGG - tig0022477:39853-39872 Msa1400830:intron 40.0%
GGCAAAGAGATAATATCGGA+TGG + tig0022477:40270-40289 None:intergenic 40.0%
GAAAACGACACAGCAAATAG+GGG + tig0022477:40393-40412 None:intergenic 40.0%
GTGAAAACGACACAGCAAAT+AGG + tig0022477:40395-40414 None:intergenic 40.0%
AATCAACAAAGCAAAGAGGG+AGG + tig0022477:40420-40439 None:intergenic 40.0%
! TAATGACTGGTTGTGGGTAA+TGG + tig0022477:40498-40517 None:intergenic 40.0%
TTATAAGTTGTCAGCAGCAC+GGG - tig0022477:40515-40534 Msa1400830:intron 40.0%
TTGTAATTAGGGAAGGTTGC+TGG + tig0022477:40758-40777 None:intergenic 40.0%
GCAAATGCTCCTAGTGATTA+TGG + tig0022477:40832-40851 None:intergenic 40.0%
!! TAATCACTAGGAGCATTTGC+TGG - tig0022477:40832-40851 Msa1400830:intron 40.0%
!! AATCACTAGGAGCATTTGCT+GGG - tig0022477:40833-40852 Msa1400830:intron 40.0%
GAAACATTGCAATGCTTGAG+TGG + tig0022477:41247-41266 None:intergenic 40.0%
ATACAGGAATCATCTGCTAC+TGG - tig0022477:41338-41357 Msa1400830:intron 40.0%
!!! TCCCAGGAAAAGTTTTGACT+TGG - tig0022477:41462-41481 Msa1400830:intron 40.0%
TCTGCTATATACCAGCTTTG+GGG + tig0022477:41580-41599 None:intergenic 40.0%
CAGGTTCACTAGGAAACTAT+TGG - tig0022477:41837-41856 Msa1400830:intron 40.0%
! GAAACTATTGGTTGCTGTCA+GGG - tig0022477:41849-41868 Msa1400830:intron 40.0%
ATTTCGTGTACCTGCCAATT+TGG + tig0022477:41919-41938 None:intergenic 40.0%
AAATTGGCAGGTACACGAAA+TGG - tig0022477:41918-41937 Msa1400830:intron 40.0%
! TTCATTTTGTTCGGAATGCG+GGG + tig0022477:41971-41990 None:intergenic 40.0%
! CTTCATTTTGTTCGGAATGC+GGG + tig0022477:41972-41991 None:intergenic 40.0%
! GCTTCATTTTGTTCGGAATG+CGG + tig0022477:41973-41992 None:intergenic 40.0%
AAATTCTGAGTTAGGTCTGG+AGG - tig0022477:42050-42069 Msa1400830:intron 40.0%
CACTGTTCTACGTCAGTAAT+GGG + tig0022477:42385-42404 None:intergenic 40.0%
TCACTGTTCTACGTCAGTAA+TGG + tig0022477:42386-42405 None:intergenic 40.0%
!! TCAGTTGGTGTTGATCATGT+TGG - tig0022477:42632-42651 Msa1400830:intron 40.0%
ATGAAAGTGATCGCAGTCTT+GGG + tig0022477:42896-42915 None:intergenic 40.0%
AATGAAAGTGATCGCAGTCT+TGG + tig0022477:42897-42916 None:intergenic 40.0%
CTGTACTATGCAGTATGCAA+GGG + tig0022477:43002-43021 None:intergenic 40.0%
ACTGTACTATGCAGTATGCA+AGG + tig0022477:43003-43022 None:intergenic 40.0%
AGCCATACTCGAACTTTAGT+TGG + tig0022477:43188-43207 None:intergenic 40.0%
!! CGTAAAATTTGGTGTAGCAG+TGG + tig0022477:43327-43346 None:intergenic 40.0%
! ATTGTTTGTTGGTGCATTCC+AGG - tig0022477:43536-43555 Msa1400830:intron 40.0%
!! GTTAATGACGATTTGGTGTC+TGG + tig0022477:43634-43653 None:intergenic 40.0%
ACACCAAATCGTCATTAACG+AGG - tig0022477:43635-43654 Msa1400830:intron 40.0%
GTACCTCGTTAATGACGATT+TGG + tig0022477:43641-43660 None:intergenic 40.0%
!!! TATGTTTGTTTTGAAGGCGG+TGG - tig0022477:43910-43929 Msa1400830:intron 40.0%
ACAGCCATTAATGATACGAG+GGG + tig0022477:43966-43985 None:intergenic 40.0%
GACAGCCATTAATGATACGA+GGG + tig0022477:43967-43986 None:intergenic 40.0%
AGACAGCCATTAATGATACG+AGG + tig0022477:43968-43987 None:intergenic 40.0%
! ACGCACATTTTACCGAGATT+TGG - tig0022477:43988-44007 Msa1400830:intron 40.0%
! CACATTTTACCGAGATTTGG+AGG - tig0022477:43991-44010 Msa1400830:intron 40.0%
TTGAGTAATATCCCCTATGC+TGG - tig0022477:44098-44117 Msa1400830:CDS 40.0%
AACTTATCAGACCAGCATAG+GGG + tig0022477:44112-44131 None:intergenic 40.0%
CTAACTTATCAGACCAGCAT+AGG + tig0022477:44114-44133 None:intergenic 40.0%
CAACTGGGAAGATCATAAGT+AGG - tig0022477:44168-44187 Msa1400830:CDS 40.0%
GCATCCCGTAATAAACTTGT+GGG + tig0022477:44239-44258 None:intergenic 40.0%
TGCATCCCGTAATAAACTTG+TGG + tig0022477:44240-44259 None:intergenic 40.0%
GAAAAGCAATGGAAAGAAGG+TGG + tig0022477:44360-44379 None:intergenic 40.0%
! ATAGTGGGATTTGGGATAGT+GGG + tig0022477:44384-44403 None:intergenic 40.0%
!! GGATAGTGATAGTGGGATTT+GGG + tig0022477:44392-44411 None:intergenic 40.0%
ACTCCACACTTCAACAATGG+AGG - tig0022477:39177-39196 Msa1400830:three_prime_UTR 45.0%
CTCCACACTTCAACAATGGA+GGG - tig0022477:39178-39197 Msa1400830:three_prime_UTR 45.0%
GAAGTTGAAGGTGAAGAGAG+GGG + tig0022477:39214-39233 None:intergenic 45.0%
GGTGGTTTAGTAGTGAAGAG+GGG + tig0022477:39267-39286 None:intergenic 45.0%
GTGGTGGTTTAGTAGTGAAG+AGG + tig0022477:39269-39288 None:intergenic 45.0%
ATTTGGGGAAGTGAGAGTAG+CGG + tig0022477:39291-39310 None:intergenic 45.0%
TGGGTTTGGGAAGGAATTTG+GGG + tig0022477:39306-39325 None:intergenic 45.0%
GTCTTTGTCGAGTGCTAAAG+TGG + tig0022477:39383-39402 None:intergenic 45.0%
!! CGACCGGTTTTATCGAGTTT+AGG + tig0022477:39451-39470 None:intergenic 45.0%
AAACGGATGAATGAGCGTAG+AGG - tig0022477:39640-39659 Msa1400830:intron 45.0%
! GTTTTACTCCAGGCTGCAAT+TGG + tig0022477:40224-40243 None:intergenic 45.0%
! CATTTTAAGCTGGTGTGGTG+TGG + tig0022477:40291-40310 None:intergenic 45.0%
GTGATTGTGTACAGCAGTGA+GGG + tig0022477:40453-40472 None:intergenic 45.0%
TAATATCAGGCTGCCACACA+AGG + tig0022477:41009-41028 None:intergenic 45.0%
CGTAGTGCAGCTGTAATATC+AGG + tig0022477:41022-41041 None:intergenic 45.0%
ATGTTGTCTCATGGGTACCA+AGG + tig0022477:41078-41097 None:intergenic 45.0%
! TAAGGAGGGGTACATCCATA+TGG - tig0022477:41221-41240 Msa1400830:intron 45.0%
ATGACAGAAGTCTTTGTCCC+AGG - tig0022477:41446-41465 Msa1400830:intron 45.0%
! CTGCTATATACCAGCTTTGG+GGG + tig0022477:41579-41598 None:intergenic 45.0%
CCATTGGAATAAGGAGCTGA+GGG + tig0022477:41786-41805 None:intergenic 45.0%
TCCATTGGAATAAGGAGCTG+AGG + tig0022477:41787-41806 None:intergenic 45.0%
TAGCACTGTGTCATATCTGC+AGG - tig0022477:41818-41837 Msa1400830:intron 45.0%
GTCATATCTGCAGGTTCACT+AGG - tig0022477:41827-41846 Msa1400830:intron 45.0%
! GGAAACTATTGGTTGCTGTC+AGG - tig0022477:41848-41867 Msa1400830:intron 45.0%
AGTTATCCCACCAAATTGGC+AGG - tig0022477:41906-41925 Msa1400830:intron 45.0%
! TCATTTTGTTCGGAATGCGG+GGG + tig0022477:41970-41989 None:intergenic 45.0%
CTTCCCACTAGGTGACAAAA+AGG - tig0022477:42352-42371 Msa1400830:intron 45.0%
TGACGTAGAACAGTGATCCT+AGG - tig0022477:42390-42409 Msa1400830:intron 45.0%
GACGTAGAACAGTGATCCTA+GGG - tig0022477:42391-42410 Msa1400830:intron 45.0%
!! CAAAGTCAAAGGAGTACCCT+AGG + tig0022477:42410-42429 None:intergenic 45.0%
! CTAGGGTACTCCTTTGACTT+TGG - tig0022477:42408-42427 Msa1400830:intron 45.0%
! TTTAGTGACTTGCACTCAGC+CGG + tig0022477:42848-42867 None:intergenic 45.0%
! TCGAGTATGGCTTGTAACCA+AGG - tig0022477:43196-43215 Msa1400830:intron 45.0%
ACAAAAAATTGGGGTGGCCT+TGG + tig0022477:43216-43235 None:intergenic 45.0%
AGGTGTGTGTGTGTATGCTA+GGG + tig0022477:43452-43471 None:intergenic 45.0%
GGGGAAAAGCAATGGAAAGA+AGG + tig0022477:44363-44382 None:intergenic 45.0%
! TAGTGGGATTTGGGATAGTG+GGG + tig0022477:44383-44402 None:intergenic 45.0%
!! GATAGTGGGATTTGGGATAG+TGG + tig0022477:44385-44404 None:intergenic 45.0%
!! GGGATAGTGATAGTGGGATT+TGG + tig0022477:44393-44412 None:intergenic 45.0%
!! AATAATAAAAACAAAAAATT+GGG + tig0022477:43226-43245 None:intergenic 5.0%
CTCCCTCCATTGTTGAAGTG+TGG + tig0022477:39183-39202 None:intergenic 50.0%
AGGTGAAGAGAGGGGAAGTA+AGG + tig0022477:39206-39225 None:intergenic 50.0%
GCAAAAGCGGTGGTTGAGTT+TGG + tig0022477:39242-39261 None:intergenic 50.0%
GTGAAGAGGGGAAGCAAAAG+CGG + tig0022477:39255-39274 None:intergenic 50.0%
!! TCTCTGAAATGCTCTCTCCG+TGG - tig0022477:39355-39374 Msa1400830:three_prime_UTR 50.0%
CGAGTGCTAAAGTGGAACCA+CGG + tig0022477:39375-39394 None:intergenic 50.0%
TCTCGGACTACAAAACCGAC+CGG + tig0022477:39467-39486 None:intergenic 50.0%
TGCTTCGTGTTTGGAGGGAT+TGG - tig0022477:39597-39616 Msa1400830:CDS 50.0%
AAGACTTAGGACTAGGGGTG+TGG - tig0022477:40154-40173 Msa1400830:intron 50.0%
GAAGTATGCCAATTGCAGCC+TGG - tig0022477:40213-40232 Msa1400830:intron 50.0%
!!! TGTATTTTTGGCCCTCCCAC+AGG - tig0022477:40364-40383 Msa1400830:intron 50.0%
!!! GTATTTTTGGCCCTCCCACA+GGG - tig0022477:40365-40384 Msa1400830:intron 50.0%
CAACAAAGCAAAGAGGGAGG+TGG + tig0022477:40417-40436 None:intergenic 50.0%
ATTGTGTACAGCAGTGAGGG+AGG + tig0022477:40450-40469 None:intergenic 50.0%
GGTGATTGTGTACAGCAGTG+AGG + tig0022477:40454-40473 None:intergenic 50.0%
CCAATGGGTAGTCGAGATGA+GGG + tig0022477:40475-40494 None:intergenic 50.0%
! GGTTGTGGGTAATGGCCAAT+GGG + tig0022477:40490-40509 None:intergenic 50.0%
! TGGTTGTGGGTAATGGCCAA+TGG + tig0022477:40491-40510 None:intergenic 50.0%
TTTGCTGGGACGTGAGAACT+AGG - tig0022477:40847-40866 Msa1400830:intron 50.0%
GATGACGATGAACTGCGTGA+GGG - tig0022477:40869-40888 Msa1400830:intron 50.0%
!! CGTGAGGGATTGGCCAATTA+GGG - tig0022477:40884-40903 Msa1400830:intron 50.0%
TACAGCTGCACTACGTGATC+TGG - tig0022477:41027-41046 Msa1400830:intron 50.0%
TGGTTCTCACTGCAGCAGTT+TGG - tig0022477:41152-41171 Msa1400830:intron 50.0%
GCAATGCTTGAGTGGCCATA+TGG + tig0022477:41239-41258 None:intergenic 50.0%
GCTGCAAGGACTTCTTCTTC+TGG + tig0022477:41555-41574 None:intergenic 50.0%
CCCTCAGCTCCTTATTCCAA+TGG - tig0022477:41783-41802 Msa1400830:intron 50.0%
TGGTTGCTGTCAGGGATAGA+TGG - tig0022477:41857-41876 Msa1400830:intron 50.0%
GGTTGCTGTCAGGGATAGAT+GGG - tig0022477:41858-41877 Msa1400830:intron 50.0%
CGTGTACCTGCCAATTTGGT+GGG + tig0022477:41915-41934 None:intergenic 50.0%
TCGTGTACCTGCCAATTTGG+TGG + tig0022477:41916-41935 None:intergenic 50.0%
! CATTTTGTTCGGAATGCGGG+GGG + tig0022477:41969-41988 None:intergenic 50.0%
GAGGTGTGTGTGTGTATGCT+AGG + tig0022477:43453-43472 None:intergenic 50.0%
CATTCCAGGAAGAACCAGCA+GGG - tig0022477:43550-43569 Msa1400830:intron 50.0%
!! AGCTCTAGAATCTTCCCTGC+TGG + tig0022477:43567-43586 None:intergenic 50.0%
!!! TGTTTTGAAGGCGGTGGATC+TGG - tig0022477:43916-43935 Msa1400830:intron 50.0%
CTGGCTAAACGGTTCTGTGA+TGG - tig0022477:43935-43954 Msa1400830:CDS 50.0%
GCAGCCCCTCGTATCATTAA+TGG - tig0022477:43959-43978 Msa1400830:CDS 50.0%
GCAATGGAAAGAAGGTGGGT+GGG + tig0022477:44355-44374 None:intergenic 50.0%
AGCAATGGAAAGAAGGTGGG+TGG + tig0022477:44356-44375 None:intergenic 50.0%
!! GGATAGTGGGGGAAAAGCAA+TGG + tig0022477:44371-44390 None:intergenic 50.0%
! AGTGGGATTTGGGATAGTGG+GGG + tig0022477:44382-44401 None:intergenic 50.0%
AAGAGGGGAAGCAAAAGCGG+TGG + tig0022477:39252-39271 None:intergenic 55.0%
GCAAGTTCTCTAGCGGCTCT+CGG + tig0022477:39484-39503 None:intergenic 55.0%
GTGTTTGGAGGGATTGGACC+CGG - tig0022477:39603-39622 Msa1400830:CDS 55.0%
!! AGCAAATAGGGGTGCCCTGT+GGG + tig0022477:40382-40401 None:intergenic 55.0%
CCCTCATCTCGACTACCCAT+TGG - tig0022477:40472-40491 Msa1400830:intron 55.0%
GCCAATGGGTAGTCGAGATG+AGG + tig0022477:40476-40495 None:intergenic 55.0%
GGATGACGATGAACTGCGTG+AGG - tig0022477:40868-40887 Msa1400830:intron 55.0%
CGATGAACTGCGTGAGGGAT+TGG - tig0022477:40874-40893 Msa1400830:intron 55.0%
!! GCGTGAGGGATTGGCCAATT+AGG - tig0022477:40883-40902 Msa1400830:intron 55.0%
TTACAAGCAGCGAGGGAGCT+TGG + tig0022477:43410-43429 None:intergenic 55.0%
GCATTCCAGGAAGAACCAGC+AGG - tig0022477:43549-43568 Msa1400830:intron 55.0%
!! TCTTCCCTGCTGGTTCTTCC+TGG + tig0022477:43557-43576 None:intergenic 55.0%
AGGCGGTGGATCTGGCTAAA+CGG - tig0022477:43924-43943 Msa1400830:CDS 55.0%
GGAAGTGAGAGTAGCGGTGG+TGG + tig0022477:39285-39304 None:intergenic 60.0%
TGGGGAAGTGAGAGTAGCGG+TGG + tig0022477:39288-39307 None:intergenic 60.0%
TGGAGGGATTGGACCCGGTT+CGG - tig0022477:39608-39627 Msa1400830:CDS 60.0%
!! AATAGGGGTGCCCTGTGGGA+GGG + tig0022477:40378-40397 None:intergenic 60.0%
!! AAATAGGGGTGCCCTGTGGG+AGG + tig0022477:40379-40398 None:intergenic 60.0%
!! CAGCAAATAGGGGTGCCCTG+TGG + tig0022477:40383-40402 None:intergenic 60.0%
AAGCAGCGAGGGAGCTTGGT+TGG + tig0022477:43406-43425 None:intergenic 60.0%
!! CCAGCTTTGGGGGAGCTGCA+AGG + tig0022477:41569-41588 None:intergenic 65.0%
CCTTGCAGCTCCCCCAAAGC+TGG - tig0022477:41566-41585 Msa1400830:intron 65.0%
Chromosome Type Strat End Strand Name
tig0022477 gene 39157 44425 39157 ID=Msa1400830;Name=Msa1400830
tig0022477 mRNA 39157 44425 39157 ID=Msa1400830-mRNA-1;Parent=Msa1400830;Name=Msa1400830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=36|1|1|1|1|1|7|392|291
tig0022477 exon 39157 39656 39157 ID=Msa1400830-mRNA-1:exon:17974;Parent=Msa1400830-mRNA-1
tig0022477 exon 39926 40024 39926 ID=Msa1400830-mRNA-1:exon:17973;Parent=Msa1400830-mRNA-1
tig0022477 exon 41655 41742 41655 ID=Msa1400830-mRNA-1:exon:17972;Parent=Msa1400830-mRNA-1
tig0022477 exon 41972 42026 41972 ID=Msa1400830-mRNA-1:exon:17971;Parent=Msa1400830-mRNA-1
tig0022477 exon 43708 43842 43708 ID=Msa1400830-mRNA-1:exon:17970;Parent=Msa1400830-mRNA-1
tig0022477 exon 43921 43997 43921 ID=Msa1400830-mRNA-1:exon:17969;Parent=Msa1400830-mRNA-1
tig0022477 exon 44076 44425 44076 ID=Msa1400830-mRNA-1:exon:17968;Parent=Msa1400830-mRNA-1
tig0022477 five_prime_UTR 44390 44425 44390 ID=Msa1400830-mRNA-1:five_prime_utr;Parent=Msa1400830-mRNA-1
tig0022477 CDS 44076 44389 44076 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 43921 43997 43921 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 43708 43842 43708 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 41972 42026 41972 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 41655 41742 41655 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 39926 40024 39926 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 CDS 39549 39656 39549 ID=Msa1400830-mRNA-1:cds;Parent=Msa1400830-mRNA-1
tig0022477 three_prime_UTR 39157 39548 39157 ID=Msa1400830-mRNA-1:three_prime_utr;Parent=Msa1400830-mRNA-1
Gene Sequence

>Msa1400830

ATGGAGGGAGCCTTACTTCCCCTCTCTTCACCTTCAACTTCTTCTTCCAAACTCAACCACCGCTTTTGCTTCCCCTCTTCACTACTAAACCACCACCGCTACTCTCACTTCCCCAAATTCCTTCCCAAACCCAAAATTAACACCGCTACTTCATCACCTTTATCTCTGAAATGCTCTCTCCGTGGTTCCACTTTAGCACTCGACAAAGACGAAACTTCTGTCTCAGAAATAACTGATAACTCTTCAATTTCTTTGCCTAAACTCGATAAAACCGGTCGGTTTTGTAGTCCGAGAGCCGCTAGAGAACTTGCTCTGTCTATAATTTATGCTTCGTGTTTGGAGGGATTGGACCCGGTTCGGTTATTTGAGAAACGGATGAATGAGCGTAGAGAGGTTGGTTATGAATTTAACAAGGACAAATTGTTGGAGTATAATCACATGAGTTTCGGAGGGCCACCTGTTATCGTTGAAACAGATGAAGAAGCTAATGAACTTCTAAGGAACATTCAACTCGAGTCTGCAATTGAAGAAGAAGTCCTTGCAGCTCCCCCAAAGCTGGTATATAGCAGATTGATTTTGAGGTTCACTAGGAAACTATTGGTTGCTGTCAGGGATAGATGGGACAGTCACGTCCCTGTCATTAACAAAGTTATCCCACCAAATTGGCAGGAAGAACCAGCAGGGAAGATTCTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAAATAGCTATGCTAGACACCAGACACCAAATCGTCATTAACGAGGCGGTGGATCTGGCTAAACGGTTCTGTGATGGAGCAGCCCCTCGTATCATTAATGGCTGTCTACGCACATTTTACCGAGATTTGGAGGCATCAAATAATAGGGTTTAG

Protein sequence

>Msa1400830

MEGALLPLSSPSTSSSKLNHRFCFPSSLLNHHRYSHFPKFLPKPKINTATSSPLSLKCSLRGSTLALDKDETSVSEITDNSSISLPKLDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRMNERREVGYEFNKDKLLEYNHMSFGGPPVIVETDEEANELLRNIQLESAIEEEVLAAPPKLVYSRLILRFTRKLLVAVRDRWDSHVPVINKVIPPNWQEEPAGKILELSILHLAMSEIAMLDTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFYRDLEASNNRV*