AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0610300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610300 MtrunA17_Chr4g0043331 97.938 291 6 0 1 291 1 291 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0610300 AT4G26370.1 68.807 218 65 1 66 283 69 283 3.25e-104 306
Msa0610300 AT4G26370.2 60.000 115 43 1 66 180 69 180 1.74e-35 128
Msa0610300 AT4G26370.3 60.000 115 43 1 66 180 69 180 1.74e-35 128

Find 102 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTTGGGAAGGAATT+TGG 0.119074 4_2:-58015330 None:intergenic
TGTTGAACCATTATTATTAT+AGG 0.182688 4_2:+58020164 Msa0610300:three_prime_UTR
TGAAGTAGCGGTGTTAATTT+TGG 0.202201 4_2:-58015348 None:intergenic
TTGGGTTTGGGAAGGAATTT+GGG 0.203019 4_2:-58015329 None:intergenic
ATTTGGAGGCATCAAATAAT+AGG 0.245346 4_2:+58020030 Msa0610300:CDS
ATTTCGTGTACCTGCCAATT+TGG 0.250481 4_2:-58017941 None:intergenic
TTATTATAGGTTTCTGCAAC+TGG 0.299436 4_2:+58020177 Msa0610300:three_prime_UTR
TCATCTGTTTCAACGATAAC+AGG 0.318092 4_2:-58015830 None:intergenic
ACAAAGTTATCCCACCAAAT+TGG 0.319429 4_2:+58017927 Msa0610300:CDS
GCAAAAGCGGTGGTTGAGTT+TGG 0.331587 4_2:-58015264 None:intergenic
AATCTGCTATATACCAGCTT+TGG 0.334078 4_2:-58017604 None:intergenic
TGGTTGCTGTCAGGGATAGA+TGG 0.336054 4_2:+58017882 Msa0610300:CDS
TATAATTTATGCTTCGTGTT+TGG 0.348060 4_2:+58015613 Msa0610300:CDS
GCAGCCCCTCGTATCATTAA+TGG 0.354885 4_2:+58019984 Msa0610300:CDS
TGCTTCGTGTTTGGAGGGAT+TGG 0.362504 4_2:+58015622 Msa0610300:CDS
AAGAAGCTAATGAACTTCTA+AGG 0.369066 4_2:+58015852 Msa0610300:CDS
GATTTCCCACAAGTTTATTA+CGG 0.374692 4_2:+58020256 Msa0610300:three_prime_UTR
AGAGAGCATTTCAGAGATAA+AGG 0.376806 4_2:-58015374 None:intergenic
GCAGAAACCTATAATAATAA+TGG 0.383326 4_2:-58020171 None:intergenic
ATCTGCTATATACCAGCTTT+GGG 0.384978 4_2:-58017603 None:intergenic
ATTTCCCACAAGTTTATTAC+GGG 0.392155 4_2:+58020257 Msa0610300:three_prime_UTR
TTTGGAGGCATCAAATAATA+GGG 0.397760 4_2:+58020031 Msa0610300:CDS
GAGTATAATCACATGAGTTT+CGG 0.405577 4_2:+58015800 Msa0610300:CDS
GTTAATGACGATTTGGTGTC+TGG 0.417195 4_2:-58019656 None:intergenic
GGAAACTATTGGTTGCTGTC+AGG 0.418304 4_2:+58017873 Msa0610300:CDS
GTACCTCGTTAATGACGATT+TGG 0.422385 4_2:-58019663 None:intergenic
GATATGCAATTATTACTAGT+TGG 0.436825 4_2:-58020328 None:intergenic
ATTTAACAAGGACAAATTGT+TGG 0.439004 4_2:+58015778 Msa0610300:CDS
TGGAGGGATTGGACCCGGTT+CGG 0.439014 4_2:+58015633 Msa0610300:CDS
CAGGTTCACTAGGAAACTAT+TGG 0.442129 4_2:+58017862 Msa0610300:intron
AATTTATGCTTCGTGTTTGG+AGG 0.449542 4_2:+58015616 Msa0610300:CDS
AGAAGTTGAAGGTGAAGAGA+GGG 0.454774 4_2:-58015237 None:intergenic
CGTTTCTCAAATAACCGAAC+CGG 0.455058 4_2:-58015647 None:intergenic
GTCTTTGTCGAGTGCTAAAG+TGG 0.463142 4_2:-58015405 None:intergenic
AGGTGAAGAGAGGGGAAGTA+AGG 0.465052 4_2:-58015228 None:intergenic
AAGAAGTTGAAGGTGAAGAG+AGG 0.465590 4_2:-58015238 None:intergenic
GGGATAACTTTGTTAATGAC+AGG 0.468047 4_2:-58017917 None:intergenic
ATTCAACTCGAGTCTGCAAT+TGG 0.472202 4_2:+58015878 Msa0610300:CDS
GCAATTATTACTAGTTGGAT+AGG 0.481035 4_2:-58020323 None:intergenic
TCGTGTACCTGCCAATTTGG+TGG 0.485420 4_2:-58017938 None:intergenic
TGGTGGTTTAGTAGTGAAGA+GGG 0.487919 4_2:-58015290 None:intergenic
GTAGGAGTTATGTTTGAAAG+TGG 0.491262 4_2:+58020211 Msa0610300:three_prime_UTR
GAAACTATTGGTTGCTGTCA+GGG 0.496002 4_2:+58017874 Msa0610300:CDS
GTGTTTGGAGGGATTGGACC+CGG 0.500612 4_2:+58015628 Msa0610300:CDS
CGTGTACCTGCCAATTTGGT+GGG 0.500976 4_2:-58017937 None:intergenic
TTGCCTAAACTCGATAAAAC+CGG 0.503153 4_2:+58015470 Msa0610300:CDS
AGAGCTTTCTATTCTTCACT+TGG 0.503711 4_2:+58019606 Msa0610300:CDS
GCATCCCGTAATAAACTTGT+GGG 0.507291 4_2:-58020261 None:intergenic
TAACTTATCAGACCAGCATA+GGG 0.513184 4_2:-58020135 None:intergenic
CTAACTTATCAGACCAGCAT+AGG 0.518019 4_2:-58020136 None:intergenic
CGGTTCGGTTATTTGAGAAA+CGG 0.523373 4_2:+58015648 Msa0610300:CDS
AGGCGGTGGATCTGGCTAAA+CGG 0.525821 4_2:+58019949 Msa0610300:intron
ATTTATGCTTCGTGTTTGGA+GGG 0.526272 4_2:+58015617 Msa0610300:CDS
AGCTCTAGAATCTTCCCTGC+TGG 0.531317 4_2:-58019589 None:intergenic
TGCATCCCGTAATAAACTTG+TGG 0.533013 4_2:-58020262 None:intergenic
CTGGCTAAACGGTTCTGTGA+TGG 0.535411 4_2:+58019960 Msa0610300:CDS
GCAAGTTCTCTAGCGGCTCT+CGG 0.536127 4_2:-58015506 None:intergenic
TATTTGATGCCTCCAAATCT+CGG 0.536490 4_2:-58020025 None:intergenic
AGTTTGGAAGAAGAAGTTGA+AGG 0.542605 4_2:-58015248 None:intergenic
TTGAGTAATATCCCCTATGC+TGG 0.546544 4_2:+58020123 Msa0610300:three_prime_UTR
GTCATATCTGCAGGTTCACT+AGG 0.549643 4_2:+58017852 Msa0610300:intron
GGTTGCTGTCAGGGATAGAT+GGG 0.555102 4_2:+58017883 Msa0610300:CDS
TCTACTCCACACTTCAACAA+TGG 0.555760 4_2:+58015199 Msa0610300:exon
GCATTCCAGGAAGAACCAGC+AGG 0.565802 4_2:+58019574 Msa0610300:intron
CTCCCTCCATTGTTGAAGTG+TGG 0.566513 4_2:-58015205 None:intergenic
CTGCTATATACCAGCTTTGG+GGG 0.567625 4_2:-58017601 None:intergenic
GAAGTTGAAGGTGAAGAGAG+GGG 0.577370 4_2:-58015236 None:intergenic
TATTATAGGTTTCTGCAACT+GGG 0.582646 4_2:+58020178 Msa0610300:three_prime_UTR
AGTTATCCCACCAAATTGGC+AGG 0.586746 4_2:+58017931 Msa0610300:CDS
GATTGTTGAAAATATTGATG+TGG 0.586916 4_2:+58020098 Msa0610300:three_prime_UTR
TATAATCACATGAGTTTCGG+AGG 0.587444 4_2:+58015803 Msa0610300:CDS
GGAAGTGAGAGTAACGGTGG+TGG 0.588538 4_2:-58015307 None:intergenic
CTCCACACTTCAACAATGGA+GGG 0.590137 4_2:+58015203 Msa0610300:exon
AGTGTGGAGTAGATAGATAA+CGG 0.591828 4_2:-58015189 None:intergenic
TGGGTTTGGGAAGGAATTTG+GGG 0.610576 4_2:-58015328 None:intergenic
ACTCCACACTTCAACAATGG+AGG 0.611176 4_2:+58015202 Msa0610300:exon
CAACTGGGAAGATCATAAGT+AGG 0.620936 4_2:+58020193 Msa0610300:three_prime_UTR
GTGGTGGTTTAGTAGTGAAG+AGG 0.622444 4_2:-58015291 None:intergenic
GTGAAGAGGGGAAGCAAAAG+CGG 0.626097 4_2:-58015277 None:intergenic
GGTGGTTTAGTAGTGAAGAG+GGG 0.629211 4_2:-58015289 None:intergenic
GACAGCCATTAATGATACGA+GGG 0.631693 4_2:-58019989 None:intergenic
TGGGGAAGTGAGAGTAACGG+TGG 0.638686 4_2:-58015310 None:intergenic
ATTTGGGGAAGTGAGAGTAA+CGG 0.641749 4_2:-58015313 None:intergenic
GGTTGGTTATGAATTTAACA+AGG 0.642550 4_2:+58015766 Msa0610300:CDS
TCTGCTATATACCAGCTTTG+GGG 0.649992 4_2:-58017602 None:intergenic
TCTGTTTCAACGATAACAGG+TGG 0.649999 4_2:-58015827 None:intergenic
GGATAACTTTGTTAATGACA+GGG 0.657385 4_2:-58017916 None:intergenic
AGATAAAGGTGATGAAGTAG+CGG 0.660310 4_2:-58015360 None:intergenic
TCTCGGACTACAAAACCGAC+CGG 0.664343 4_2:-58015489 None:intergenic
ATAATCACATGAGTTTCGGA+GGG 0.671556 4_2:+58015804 Msa0610300:CDS
TTACAGAGCAAGTTCTCTAG+CGG 0.672676 4_2:-58015513 None:intergenic
GTTTCTCAAATAACCGAACC+GGG 0.676933 4_2:-58015646 None:intergenic
CATTCCAGGAAGAACCAGCA+GGG 0.678311 4_2:+58019575 Msa0610300:intron
TCTCTGAAATGCTCTCTCCG+TGG 0.679129 4_2:+58015380 Msa0610300:CDS
AGACAGCCATTAATGATACG+AGG 0.681753 4_2:-58019990 None:intergenic
AAACGGATGAATGAGCGTAG+AGG 0.681961 4_2:+58015665 Msa0610300:CDS
AACTTATCAGACCAGCATAG+GGG 0.689195 4_2:-58020134 None:intergenic
CTAAACTCGATAAAACCGGT+CGG 0.694768 4_2:+58015474 Msa0610300:CDS
CGAGTGCTAAAGTGGAACCA+CGG 0.698369 4_2:-58015397 None:intergenic
AAGAGGGGAAGCAAAAGCGG+TGG 0.698794 4_2:-58015274 None:intergenic
ACAGCCATTAATGATACGAG+GGG 0.715241 4_2:-58019988 None:intergenic
ACACCAAATCGTCATTAACG+AGG 0.730395 4_2:+58019660 Msa0610300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTTAAAAAATTCA+TGG - chr4_2:58016603-58016622 None:intergenic 10.0%
!!! ATTTATAGTGATTTTTATAT+TGG + chr4_2:58017158-58017177 Msa0610300:intron 10.0%
!! ATAATAAAAACAAAAAATTG+GGG - chr4_2:58019250-58019269 None:intergenic 10.0%
!! CAATAATAAAAACAAAAAAT+TGG - chr4_2:58019252-58019271 None:intergenic 10.0%
!!! CAATTTTTTGTTTTTATTAT+TGG + chr4_2:58019250-58019269 Msa0610300:intron 10.0%
!!! CTTTTTATTTTTATTTTTGT+AGG + chr4_2:58019710-58019729 Msa0610300:intron 10.0%
!! TCATTACTAATATATATGAT+TGG + chr4_2:58015979-58015998 Msa0610300:intron 15.0%
!!! TTAATTAAAACATTTTAAGC+TGG - chr4_2:58016330-58016349 None:intergenic 15.0%
!!! TAGTTATAAGGATTAATTTT+GGG - chr4_2:58016362-58016381 None:intergenic 15.0%
!! AGAAAATCATATTGTAATTA+GGG - chr4_2:58016795-58016814 None:intergenic 15.0%
!! AAGAAAATCATATTGTAATT+AGG - chr4_2:58016796-58016815 None:intergenic 15.0%
!! AATGTATGATTAATTGATTA+TGG + chr4_2:58017392-58017411 Msa0610300:intron 15.0%
!!! TATCTTATTTCATAGATTTT+TGG + chr4_2:58018038-58018057 Msa0610300:intron 15.0%
!!! TTGTTTTTATTATTGGATAA+TGG + chr4_2:58019257-58019276 Msa0610300:intron 15.0%
!!! ATATACATTTGTTAATTATG+TGG + chr4_2:58019391-58019410 Msa0610300:intron 15.0%
!! ATAAAAAAACTTATATACTG+TGG + chr4_2:58019912-58019931 Msa0610300:intron 15.0%
!!! AATGTGTTTGTTTTTTATAG+AGG + chr4_2:58015745-58015764 Msa0610300:intron 20.0%
!!! TTTCATTTGTTAATTGATTG+AGG + chr4_2:58016078-58016097 Msa0610300:intron 20.0%
!!! GTAGTTATAAGGATTAATTT+TGG - chr4_2:58016363-58016382 None:intergenic 20.0%
!! AATTAATCCTTATAACTACT+TGG + chr4_2:58016364-58016383 Msa0610300:intron 20.0%
!! TTCTTGATTCAACTTAAATT+TGG - chr4_2:58016628-58016647 None:intergenic 20.0%
!!! ACTATAAATTTTTGTTCTCA+TGG - chr4_2:58017147-58017166 None:intergenic 20.0%
!!! ATTGTTCTGTTTTCATTTTA+CGG + chr4_2:58017303-58017322 Msa0610300:intron 20.0%
!! ATTTATACAGACTTTAATAC+AGG + chr4_2:58017348-58017367 Msa0610300:intron 20.0%
!! TGAAATTATGTGACATAATA+AGG - chr4_2:58017451-58017470 None:intergenic 20.0%
!!! GAACTTTGAAATTCTAATTA+TGG - chr4_2:58018208-58018227 None:intergenic 20.0%
!!! AAAATAATAATGAGGTACTA+AGG - chr4_2:58018511-58018530 None:intergenic 20.0%
!! TGGTACTAAAAATAATAATG+AGG - chr4_2:58018519-58018538 None:intergenic 20.0%
!!! TATTATTTTTAGTACCAAAC+AGG + chr4_2:58018522-58018541 Msa0610300:intron 20.0%
!!! ATTATTTTTAGTACCAAACA+GGG + chr4_2:58018523-58018542 Msa0610300:intron 20.0%
!! ATCATTAAACAGTTATTGTT+GGG + chr4_2:58018720-58018739 Msa0610300:intron 20.0%
!! TAATAGAACATTGGAAATTT+AGG + chr4_2:58018769-58018788 Msa0610300:intron 20.0%
!! AGAATAAGAATGAAACTATT+TGG - chr4_2:58018801-58018820 None:intergenic 20.0%
!! TTAAACCAGTAAAAATACAA+AGG - chr4_2:58019140-58019159 None:intergenic 20.0%
!! AAAATGTTTATCAAATGTCA+AGG + chr4_2:58019306-58019325 Msa0610300:intron 20.0%
!! CATTATCATTACGTAAAATT+TGG - chr4_2:58019363-58019382 None:intergenic 20.0%
!!! TTTTTATTTTTGTAGGTGTT+AGG + chr4_2:58019717-58019736 Msa0610300:intron 20.0%
!!! TTTTATTTTTGTAGGTGTTA+GGG + chr4_2:58019718-58019737 Msa0610300:intron 20.0%
!!! ATGTCAATTTTTTCTACTAT+TGG + chr4_2:58019766-58019785 Msa0610300:intron 20.0%
!! TGTTGAACCATTATTATTAT+AGG + chr4_2:58020164-58020183 Msa0610300:three_prime_UTR 20.0%
!!! AGCATTATTTTCAAAATTCA+AGG + chr4_2:58020300-58020319 Msa0610300:three_prime_UTR 20.0%
!! GTATTTGGAATTAACGTTAA+CGG + chr4_2:58015572-58015591 Msa0610300:intron 25.0%
! TATAATTTATGCTTCGTGTT+TGG + chr4_2:58015613-58015632 Msa0610300:CDS 25.0%
!!! ATTGTTAACTGTTTTGGTTT+TGG + chr4_2:58015690-58015709 Msa0610300:intron 25.0%
!!! TGTTTGTTTTTTATAGAGGT+TGG + chr4_2:58015749-58015768 Msa0610300:intron 25.0%
! ATTTAACAAGGACAAATTGT+TGG + chr4_2:58015778-58015797 Msa0610300:CDS 25.0%
! TGCTCAAATTTGAACTTAAT+TGG + chr4_2:58016016-58016035 Msa0610300:intron 25.0%
!!! ATTTGAACTTAATTGGTCTT+TGG + chr4_2:58016023-58016042 Msa0610300:intron 25.0%
! ATCGGTCATTTCTTTATATA+TGG + chr4_2:58016053-58016072 Msa0610300:intron 25.0%
! TTGTTTATACATGACACATA+TGG + chr4_2:58016661-58016680 Msa0610300:intron 25.0%
! ATAATCCAAGTTCTATATGT+CGG - chr4_2:58016733-58016752 None:intergenic 25.0%
! AATCATATTGTAATTAGGGA+AGG - chr4_2:58016791-58016810 None:intergenic 25.0%
! AAACCTAAAAAAACCCTAAT+TGG - chr4_2:58016926-58016945 None:intergenic 25.0%
! TTTATATGTAGTGTACTGAA+TGG - chr4_2:58017005-58017024 None:intergenic 25.0%
! TTAATCTGTCATAGATATAC+AGG - chr4_2:58017329-58017348 None:intergenic 25.0%
! ATTATGTGACATAATAAGGA+AGG - chr4_2:58017447-58017466 None:intergenic 25.0%
! AGAATATAACAAGTCACAAA+AGG - chr4_2:58017549-58017568 None:intergenic 25.0%
!!! TATATAGCAGATTGATTTTG+AGG + chr4_2:58017614-58017633 Msa0610300:CDS 25.0%
! ATGCATGCATTATATGTAAA+GGG - chr4_2:58017650-58017669 None:intergenic 25.0%
! AAATGTTAGAAATGTTAGTG+AGG + chr4_2:58017776-58017795 Msa0610300:intron 25.0%
! AATGTTAGAAATGTTAGTGA+GGG + chr4_2:58017777-58017796 Msa0610300:intron 25.0%
!! ATCTATTGCTTCATTTTGTT+CGG - chr4_2:58018005-58018024 None:intergenic 25.0%
! AAAGTAGTCATTATAAAGCT+TGG - chr4_2:58018111-58018130 None:intergenic 25.0%
!! AAGCTTTATAATGACTACTT+TGG + chr4_2:58018110-58018129 Msa0610300:intron 25.0%
! TAATTATGGCATTGTTTCAA+AGG - chr4_2:58018194-58018213 None:intergenic 25.0%
! ATTGTTCAAGATAATGTGTA+AGG - chr4_2:58018349-58018368 None:intergenic 25.0%
!! TTAGGGATTATATCCTATTT+TGG - chr4_2:58018595-58018614 None:intergenic 25.0%
!!! TGATTTGTTAGTTGTTTCTT+AGG - chr4_2:58018620-58018639 None:intergenic 25.0%
!!! AGTGTTTTGTTGGATTTATT+GGG + chr4_2:58018697-58018716 Msa0610300:intron 25.0%
! GATCATTAAACAGTTATTGT+TGG + chr4_2:58018719-58018738 Msa0610300:intron 25.0%
! ATGATGAGTTAATAGAACAT+TGG + chr4_2:58018760-58018779 Msa0610300:intron 25.0%
! AGAAACAATCAACCTAAAAA+TGG - chr4_2:58019057-58019076 None:intergenic 25.0%
! TGTTTCTCAAATTGTCTTAT+CGG + chr4_2:58019070-58019089 Msa0610300:intron 25.0%
!!! AGATACCTTTGTATTTTTAC+TGG + chr4_2:58019132-58019151 Msa0610300:intron 25.0%
! ATAAAAACAAAAAATTGGGG+TGG - chr4_2:58019247-58019266 None:intergenic 25.0%
! TAAAATTATACAAGTGTGAG+TGG - chr4_2:58019500-58019519 None:intergenic 25.0%
!! TAGACAACTTTGTTTGTTAA+TGG + chr4_2:58019525-58019544 Msa0610300:intron 25.0%
! AACAAACAATATGCATACTA+TGG - chr4_2:58019551-58019570 None:intergenic 25.0%
! ATAGTATGCATATTGTTTGT+TGG + chr4_2:58019550-58019569 Msa0610300:intron 25.0%
!!! TTTATTTTTGTAGGTGTTAG+GGG + chr4_2:58019719-58019738 Msa0610300:intron 25.0%
! GATTGTTGAAAATATTGATG+TGG + chr4_2:58020098-58020117 Msa0610300:three_prime_UTR 25.0%
! GCAGAAACCTATAATAATAA+TGG - chr4_2:58020174-58020193 None:intergenic 25.0%
! GATATGCAATTATTACTAGT+TGG - chr4_2:58020331-58020350 None:intergenic 25.0%
!! GTGTACTGCATTTTAGTATT+TGG + chr4_2:58015557-58015576 Msa0610300:intron 30.0%
! GAGGTAATTGTTAACTGTTT+TGG + chr4_2:58015684-58015703 Msa0610300:intron 30.0%
! GGTTGGTTATGAATTTAACA+AGG + chr4_2:58015766-58015785 Msa0610300:CDS 30.0%
GAGTATAATCACATGAGTTT+CGG + chr4_2:58015800-58015819 Msa0610300:CDS 30.0%
AAGAAGCTAATGAACTTCTA+AGG + chr4_2:58015852-58015871 Msa0610300:CDS 30.0%
!! TTGGTCTTTGGAATGAAAAT+CGG + chr4_2:58016035-58016054 Msa0610300:intron 30.0%
AGCTTCACTAGAAAAGTTTA+TGG + chr4_2:58016111-58016130 Msa0610300:intron 30.0%
TGTCCAAATGAATAAGACTT+AGG + chr4_2:58016170-58016189 Msa0610300:intron 30.0%
!! AGTCCTAAGTCTTATTCATT+TGG - chr4_2:58016176-58016195 None:intergenic 30.0%
AATGAATAAGACTTAGGACT+AGG + chr4_2:58016176-58016195 Msa0610300:intron 30.0%
ATGAATAAGACTTAGGACTA+GGG + chr4_2:58016177-58016196 Msa0610300:intron 30.0%
! TAAAACATTTTAAGCTGGTG+TGG - chr4_2:58016325-58016344 None:intergenic 30.0%
GAAAATCAACAAAGCAAAGA+GGG - chr4_2:58016452-58016471 None:intergenic 30.0%
TGAAAATCAACAAAGCAAAG+AGG - chr4_2:58016453-58016472 None:intergenic 30.0%
! AACTTATAATGACTGGTTGT+GGG - chr4_2:58016533-58016552 None:intergenic 30.0%
ACGACAGTTAACAATTACTA+CGG - chr4_2:58016697-58016716 None:intergenic 30.0%
TTTAACCGACATATAGAACT+TGG + chr4_2:58016725-58016744 Msa0610300:intron 30.0%
ACTATTAAGCGTGTGATAAA+TGG - chr4_2:58016821-58016840 None:intergenic 30.0%
TATAAATTGAACTCCTTGTG+TGG + chr4_2:58017019-58017038 Msa0610300:intron 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_2:58017084-58017103 Msa0610300:intron 30.0%
AAAGTTTGATGTTGTCTCAT+GGG - chr4_2:58017112-58017131 None:intergenic 30.0%
AAAAGTTTGATGTTGTCTCA+TGG - chr4_2:58017113-58017132 None:intergenic 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_2:58017084-58017103 Msa0610300:intron 30.0%
AGCAATTTGATGTTGTAAGT+TGG + chr4_2:58017207-58017226 Msa0610300:intron 30.0%
TCCTTAGAACTACTACTTTA+AGG - chr4_2:58017233-58017252 None:intergenic 30.0%
!! TTAAAGTAGTAGTTCTAAGG+AGG + chr4_2:58017232-58017251 Msa0610300:intron 30.0%
!! TAAAGTAGTAGTTCTAAGGA+GGG + chr4_2:58017233-58017252 Msa0610300:intron 30.0%
GATGCATGCATTATATGTAA+AGG - chr4_2:58017651-58017670 None:intergenic 30.0%
ATGTTAGAAATGTTAGTGAG+GGG + chr4_2:58017778-58017797 Msa0610300:intron 30.0%
! TATTAGCTTCCATTGGAATA+AGG - chr4_2:58017820-58017839 None:intergenic 30.0%
GGATAACTTTGTTAATGACA+GGG - chr4_2:58017919-58017938 None:intergenic 30.0%
!! CTAACTCAGAATTTTGAGTA+GGG - chr4_2:58018069-58018088 None:intergenic 30.0%
! TGCCACATTGACTAAAAATA+TGG - chr4_2:58018136-58018155 None:intergenic 30.0%
AAAGGATGATAAAGATAGCA+GGG - chr4_2:58018176-58018195 None:intergenic 30.0%
! AGACATAATTTGTCTAGAGT+TGG + chr4_2:58018238-58018257 Msa0610300:intron 30.0%
! GACATAATTTGTCTAGAGTT+GGG + chr4_2:58018239-58018258 Msa0610300:intron 30.0%
CTGTTCAACCTAAATTTACA+AGG + chr4_2:58018291-58018310 Msa0610300:intron 30.0%
GCATATAAAACCAAAGTCAA+AGG - chr4_2:58018446-58018465 None:intergenic 30.0%
! TTATATGCTCTCTGAAGAAA+AGG + chr4_2:58018458-58018477 Msa0610300:intron 30.0%
! AATAATGAGGTACTAAGGAT+GGG - chr4_2:58018506-58018525 None:intergenic 30.0%
! TAATAATGAGGTACTAAGGA+TGG - chr4_2:58018507-58018526 None:intergenic 30.0%
AGAATAGGGTTACCTTAATA+AGG - chr4_2:58018554-58018573 None:intergenic 30.0%
TCTCATTCCAGTATAGAATA+GGG - chr4_2:58018568-58018587 None:intergenic 30.0%
ATCTCATTCCAGTATAGAAT+AGG - chr4_2:58018569-58018588 None:intergenic 30.0%
GGAATGAGATAATCCAAAAT+AGG + chr4_2:58018579-58018598 Msa0610300:intron 30.0%
!! TAGTTGTTTCTTAGGAGTTA+GGG - chr4_2:58018612-58018631 None:intergenic 30.0%
!! TTAGTTGTTTCTTAGGAGTT+AGG - chr4_2:58018613-58018632 None:intergenic 30.0%
AACCTTAATTACTGATCAGT+TGG + chr4_2:58018642-58018661 Msa0610300:intron 30.0%
GATCATGTTGGAAATAGTAA+TGG + chr4_2:58018669-58018688 Msa0610300:intron 30.0%
!! AATGGTATTGAGTGTTTTGT+TGG + chr4_2:58018687-58018706 Msa0610300:intron 30.0%
!! GAGTGTTTTGTTGGATTTAT+TGG + chr4_2:58018696-58018715 Msa0610300:intron 30.0%
TAAATGCAGTTAAATTCAGC+CGG + chr4_2:58018851-58018870 Msa0610300:intron 30.0%
!! TACAGTACACTACCATTTTT+AGG + chr4_2:58019042-58019061 Msa0610300:intron 30.0%
TTATCGGTCATCTAGTATAT+TGG + chr4_2:58019086-58019105 Msa0610300:intron 30.0%
!! ATAATGGATATGCGTACATA+AGG + chr4_2:58019273-58019292 Msa0610300:intron 30.0%
! GAGCTATATTTTCTGCTTAA+TGG - chr4_2:58019817-58019836 None:intergenic 30.0%
! AAGCAGAAAATATAGCTCTA+AGG + chr4_2:58019819-58019838 Msa0610300:intron 30.0%
!! AGCAGAAAATATAGCTCTAA+GGG + chr4_2:58019820-58019839 Msa0610300:intron 30.0%
!! ATTTGGAGGCATCAAATAAT+AGG + chr4_2:58020030-58020049 Msa0610300:CDS 30.0%
!! TTTGGAGGCATCAAATAATA+GGG + chr4_2:58020031-58020050 Msa0610300:CDS 30.0%
TTATTATAGGTTTCTGCAAC+TGG + chr4_2:58020177-58020196 Msa0610300:three_prime_UTR 30.0%
TATTATAGGTTTCTGCAACT+GGG + chr4_2:58020178-58020197 Msa0610300:three_prime_UTR 30.0%
GATTTCCCACAAGTTTATTA+CGG + chr4_2:58020256-58020275 Msa0610300:three_prime_UTR 30.0%
ATTTCCCACAAGTTTATTAC+GGG + chr4_2:58020257-58020276 Msa0610300:three_prime_UTR 30.0%
GCAATTATTACTAGTTGGAT+AGG - chr4_2:58020326-58020345 None:intergenic 30.0%
AGTGTGGAGTAGATAGATAA+CGG - chr4_2:58015192-58015211 None:intergenic 35.0%
AGTTTGGAAGAAGAAGTTGA+AGG - chr4_2:58015251-58015270 None:intergenic 35.0%
!!! TGTTAATTTTGGGTTTGGGA+AGG - chr4_2:58015340-58015359 None:intergenic 35.0%
!! GAAGTAGCGGTGTTAATTTT+GGG - chr4_2:58015350-58015369 None:intergenic 35.0%
!! TGAAGTAGCGGTGTTAATTT+TGG - chr4_2:58015351-58015370 None:intergenic 35.0%
AGATAAAGGTGATGAAGTAG+CGG - chr4_2:58015363-58015382 None:intergenic 35.0%
!! AGAGAGCATTTCAGAGATAA+AGG - chr4_2:58015377-58015396 None:intergenic 35.0%
TTGCCTAAACTCGATAAAAC+CGG + chr4_2:58015470-58015489 Msa0610300:CDS 35.0%
!! TTAACGGTCTTTGATTTTGC+AGG + chr4_2:58015588-58015607 Msa0610300:intron 35.0%
AATTTATGCTTCGTGTTTGG+AGG + chr4_2:58015616-58015635 Msa0610300:CDS 35.0%
ATTTATGCTTCGTGTTTGGA+GGG + chr4_2:58015617-58015636 Msa0610300:CDS 35.0%
!!! GTTTTGGTTTTGGTTGTTGT+TGG + chr4_2:58015700-58015719 Msa0610300:intron 35.0%
! TTTGGTTGTTGTTGGTATTG+TGG + chr4_2:58015708-58015727 Msa0610300:intron 35.0%
TATAATCACATGAGTTTCGG+AGG + chr4_2:58015803-58015822 Msa0610300:CDS 35.0%
ATAATCACATGAGTTTCGGA+GGG + chr4_2:58015804-58015823 Msa0610300:CDS 35.0%
TCATCTGTTTCAACGATAAC+AGG - chr4_2:58015833-58015852 None:intergenic 35.0%
TGAATAAGACTTAGGACTAG+GGG + chr4_2:58016178-58016197 Msa0610300:intron 35.0%
! ATGAAACTGTAGTTCTGTTG+CGG + chr4_2:58016207-58016226 Msa0610300:intron 35.0%
! GTGTAAAACTGTTTTACTCC+AGG - chr4_2:58016263-58016282 None:intergenic 35.0%
AGATAATATCGGATGGTGAT+TGG - chr4_2:58016292-58016311 None:intergenic 35.0%
GTGTGGCAAAGAGATAATAT+CGG - chr4_2:58016303-58016322 None:intergenic 35.0%
AGTAGAGCCAAGTAGTTATA+AGG - chr4_2:58016374-58016393 None:intergenic 35.0%
!!! ACTTGGCTCTACTGTATTTT+TGG + chr4_2:58016381-58016400 Msa0610300:intron 35.0%
TGAAAACGACACAGCAAATA+GGG - chr4_2:58016423-58016442 None:intergenic 35.0%
! CAACTTATAATGACTGGTTG+TGG - chr4_2:58016534-58016553 None:intergenic 35.0%
TGCTGACAACTTATAATGAC+TGG - chr4_2:58016540-58016559 None:intergenic 35.0%
ATTATAAGTTGTCAGCAGCA+CGG + chr4_2:58016543-58016562 Msa0610300:intron 35.0%
AGTTAACAATTACTACGGAG+GGG - chr4_2:58016692-58016711 None:intergenic 35.0%
CAGTTAACAATTACTACGGA+GGG - chr4_2:58016693-58016712 None:intergenic 35.0%
ACAGTTAACAATTACTACGG+AGG - chr4_2:58016694-58016713 None:intergenic 35.0%
GTAACATCTCCATAATCACT+AGG + chr4_2:58016846-58016865 Msa0610300:intron 35.0%
!!! TGGCCAATTAGGGTTTTTTT+AGG + chr4_2:58016920-58016939 Msa0610300:intron 35.0%
! TTTTGTTCTCATGGATACCA+AGG - chr4_2:58017138-58017157 None:intergenic 35.0%
! GCCTTAAAGTAGTAGTTCTA+AGG + chr4_2:58017229-58017248 Msa0610300:intron 35.0%
!! AAAGTAGTAGTTCTAAGGAG+GGG + chr4_2:58017234-58017253 Msa0610300:intron 35.0%
! AACCAAGTCAAAACTTTTCC+TGG - chr4_2:58017492-58017511 None:intergenic 35.0%
ATCTGCTATATACCAGCTTT+GGG - chr4_2:58017606-58017625 None:intergenic 35.0%
AATCTGCTATATACCAGCTT+TGG - chr4_2:58017607-58017626 None:intergenic 35.0%
! GCTAGATTATTAGCTTCCAT+TGG - chr4_2:58017827-58017846 None:intergenic 35.0%
GGGATAACTTTGTTAATGAC+AGG - chr4_2:58017920-58017939 None:intergenic 35.0%
ACAAAGTTATCCCACCAAAT+TGG + chr4_2:58017927-58017946 Msa0610300:CDS 35.0%
!! CCTAACTCAGAATTTTGAGT+AGG - chr4_2:58018070-58018089 None:intergenic 35.0%
CCTACTCAAAATTCTGAGTT+AGG + chr4_2:58018067-58018086 Msa0610300:intron 35.0%
TCAAAATTCTGAGTTAGGTC+TGG + chr4_2:58018072-58018091 Msa0610300:intron 35.0%
!!! GGCCATATTTTTAGTCAATG+TGG + chr4_2:58018131-58018150 Msa0610300:intron 35.0%
AGATAGCAGGGGTTAAATAA+TGG - chr4_2:58018164-58018183 None:intergenic 35.0%
AAGGATGATAAAGATAGCAG+GGG - chr4_2:58018175-58018194 None:intergenic 35.0%
CAAAGGATGATAAAGATAGC+AGG - chr4_2:58018177-58018196 None:intergenic 35.0%
GTCTCAGACCTTGTAAATTT+AGG - chr4_2:58018302-58018321 None:intergenic 35.0%
GTGTAAGGAAAAGACATAAC+AGG - chr4_2:58018334-58018353 None:intergenic 35.0%
AATAAAAGTCTCTTCCCACT+AGG + chr4_2:58018366-58018385 Msa0610300:intron 35.0%
! AAACCTTTTTGTCACCTAGT+GGG - chr4_2:58018383-58018402 None:intergenic 35.0%
! AAAACCTTTTTGTCACCTAG+TGG - chr4_2:58018384-58018403 None:intergenic 35.0%
! ACTAAGGATGGGTTTATGTT+AGG - chr4_2:58018495-58018514 None:intergenic 35.0%
! TAATAAGGTGTTTCCCTGTT+TGG - chr4_2:58018539-58018558 None:intergenic 35.0%
AACAGGGAAACACCTTATTA+AGG + chr4_2:58018539-58018558 Msa0610300:intron 35.0%
AAGGTAACCCTATTCTATAC+TGG + chr4_2:58018558-58018577 Msa0610300:intron 35.0%
CACCAACTGATCAGTAATTA+AGG - chr4_2:58018647-58018666 None:intergenic 35.0%
TAATACAAGTGCGACTGTAA+AGG - chr4_2:58018985-58019004 None:intergenic 35.0%
AGTTGGAATTCTCTTTGACT+TGG - chr4_2:58019196-58019215 None:intergenic 35.0%
TTCCAACTAAAGTTCGAGTA+TGG + chr4_2:58019208-58019227 Msa0610300:intron 35.0%
TAAATAGTTACAAGCAGCGA+GGG - chr4_2:58019442-58019461 None:intergenic 35.0%
ATAAATAGTTACAAGCAGCG+AGG - chr4_2:58019443-58019462 None:intergenic 35.0%
AATTATACAAGTGTGAGTGG+AGG - chr4_2:58019497-58019516 None:intergenic 35.0%
AGAGCTTTCTATTCTTCACT+TGG + chr4_2:58019606-58019625 Msa0610300:CDS 35.0%
!!! CTGTGGTATGTTTGTTTTGA+AGG + chr4_2:58019929-58019948 Msa0610300:intron 35.0%
!!! TGGTATGTTTGTTTTGAAGG+CGG + chr4_2:58019932-58019951 Msa0610300:intron 35.0%
TATTTGATGCCTCCAAATCT+CGG - chr4_2:58020028-58020047 None:intergenic 35.0%
TAACTTATCAGACCAGCATA+GGG - chr4_2:58020138-58020157 None:intergenic 35.0%
GTAGGAGTTATGTTTGAAAG+TGG + chr4_2:58020211-58020230 Msa0610300:three_prime_UTR 35.0%
TCTACTCCACACTTCAACAA+TGG + chr4_2:58015199-58015218 Msa0610300:exon 40.0%
AGAAGTTGAAGGTGAAGAGA+GGG - chr4_2:58015240-58015259 None:intergenic 40.0%
AAGAAGTTGAAGGTGAAGAG+AGG - chr4_2:58015241-58015260 None:intergenic 40.0%
TGGTGGTTTAGTAGTGAAGA+GGG - chr4_2:58015293-58015312 None:intergenic 40.0%
ATTTGGGGAAGTGAGAGTAA+CGG - chr4_2:58015316-58015335 None:intergenic 40.0%
TTGGGTTTGGGAAGGAATTT+GGG - chr4_2:58015332-58015351 None:intergenic 40.0%
! TTTGGGTTTGGGAAGGAATT+TGG - chr4_2:58015333-58015352 None:intergenic 40.0%
!!! GCGGTGTTAATTTTGGGTTT+GGG - chr4_2:58015344-58015363 None:intergenic 40.0%
!!! AGCGGTGTTAATTTTGGGTT+TGG - chr4_2:58015345-58015364 None:intergenic 40.0%
CTAAACTCGATAAAACCGGT+CGG + chr4_2:58015474-58015493 Msa0610300:CDS 40.0%
TTACAGAGCAAGTTCTCTAG+CGG - chr4_2:58015516-58015535 None:intergenic 40.0%
GTTTCTCAAATAACCGAACC+GGG - chr4_2:58015649-58015668 None:intergenic 40.0%
CGTTTCTCAAATAACCGAAC+CGG - chr4_2:58015650-58015669 None:intergenic 40.0%
!! CGGTTCGGTTATTTGAGAAA+CGG + chr4_2:58015648-58015667 Msa0610300:CDS 40.0%
TCTGTTTCAACGATAACAGG+TGG - chr4_2:58015830-58015849 None:intergenic 40.0%
ATTCAACTCGAGTCTGCAAT+TGG + chr4_2:58015878-58015897 Msa0610300:CDS 40.0%
GGCAAAGAGATAATATCGGA+TGG - chr4_2:58016299-58016318 None:intergenic 40.0%
GAAAACGACACAGCAAATAG+GGG - chr4_2:58016422-58016441 None:intergenic 40.0%
GTGAAAACGACACAGCAAAT+AGG - chr4_2:58016424-58016443 None:intergenic 40.0%
AATCAACAAAGCAAAGAGGG+AGG - chr4_2:58016449-58016468 None:intergenic 40.0%
! TAATGACTGGTTGTGGGTAA+TGG - chr4_2:58016527-58016546 None:intergenic 40.0%
TTATAAGTTGTCAGCAGCAC+GGG + chr4_2:58016544-58016563 Msa0610300:intron 40.0%
TTGTAATTAGGGAAGGTTGC+TGG - chr4_2:58016784-58016803 None:intergenic 40.0%
GCAAATGCTCCTAGTGATTA+TGG - chr4_2:58016858-58016877 None:intergenic 40.0%
!! TAATCACTAGGAGCATTTGC+TGG + chr4_2:58016858-58016877 Msa0610300:intron 40.0%
!! AATCACTAGGAGCATTTGCT+GGG + chr4_2:58016859-58016878 Msa0610300:intron 40.0%
GAAACATTGCAATGCTTGAG+TGG - chr4_2:58017273-58017292 None:intergenic 40.0%
ATACAGGAATCATCTGCTAC+TGG + chr4_2:58017364-58017383 Msa0610300:intron 40.0%
TATGACAGAAGTCTTTGTCC+AGG + chr4_2:58017471-58017490 Msa0610300:intron 40.0%
!!! GTCCAGGAAAAGTTTTGACT+TGG + chr4_2:58017487-58017506 Msa0610300:intron 40.0%
TCTGCTATATACCAGCTTTG+GGG - chr4_2:58017605-58017624 None:intergenic 40.0%
CAGGTTCACTAGGAAACTAT+TGG + chr4_2:58017862-58017881 Msa0610300:intron 40.0%
! GAAACTATTGGTTGCTGTCA+GGG + chr4_2:58017874-58017893 Msa0610300:CDS 40.0%
ATTTCGTGTACCTGCCAATT+TGG - chr4_2:58017944-58017963 None:intergenic 40.0%
AAATTGGCAGGTACACGAAA+TGG + chr4_2:58017943-58017962 Msa0610300:intron 40.0%
! TTCATTTTGTTCGGAATGCG+GGG - chr4_2:58017996-58018015 None:intergenic 40.0%
! CTTCATTTTGTTCGGAATGC+GGG - chr4_2:58017997-58018016 None:intergenic 40.0%
! GCTTCATTTTGTTCGGAATG+CGG - chr4_2:58017998-58018017 None:intergenic 40.0%
AAATTCTGAGTTAGGTCTGG+AGG + chr4_2:58018075-58018094 Msa0610300:intron 40.0%
CACTGTTCTACGTCAGTAAT+GGG - chr4_2:58018410-58018429 None:intergenic 40.0%
TCACTGTTCTACGTCAGTAA+TGG - chr4_2:58018411-58018430 None:intergenic 40.0%
!! TCAGTTGGTGTTGATCATGT+TGG + chr4_2:58018657-58018676 Msa0610300:intron 40.0%
AATGAAAGTGATCGCAGTCT+CGG - chr4_2:58018922-58018941 None:intergenic 40.0%
CTGTACTATGCAGTATGCAA+GGG - chr4_2:58019027-58019046 None:intergenic 40.0%
ACTGTACTATGCAGTATGCA+AGG - chr4_2:58019028-58019047 None:intergenic 40.0%
AGCCATACTCGAACTTTAGT+TGG - chr4_2:58019213-58019232 None:intergenic 40.0%
!! CGTAAAATTTGGTGTAGCAG+TGG - chr4_2:58019352-58019371 None:intergenic 40.0%
! ATTGTTTGTTGGTGCATTCC+AGG + chr4_2:58019561-58019580 Msa0610300:intron 40.0%
!! GTTAATGACGATTTGGTGTC+TGG - chr4_2:58019659-58019678 None:intergenic 40.0%
ACACCAAATCGTCATTAACG+AGG + chr4_2:58019660-58019679 Msa0610300:CDS 40.0%
GTACCTCGTTAATGACGATT+TGG - chr4_2:58019666-58019685 None:intergenic 40.0%
!!! TATGTTTGTTTTGAAGGCGG+TGG + chr4_2:58019935-58019954 Msa0610300:intron 40.0%
ACAGCCATTAATGATACGAG+GGG - chr4_2:58019991-58020010 None:intergenic 40.0%
GACAGCCATTAATGATACGA+GGG - chr4_2:58019992-58020011 None:intergenic 40.0%
AGACAGCCATTAATGATACG+AGG - chr4_2:58019993-58020012 None:intergenic 40.0%
! ACGCACATTTTACCGAGATT+TGG + chr4_2:58020013-58020032 Msa0610300:CDS 40.0%
! CACATTTTACCGAGATTTGG+AGG + chr4_2:58020016-58020035 Msa0610300:CDS 40.0%
TTGAGTAATATCCCCTATGC+TGG + chr4_2:58020123-58020142 Msa0610300:three_prime_UTR 40.0%
AACTTATCAGACCAGCATAG+GGG - chr4_2:58020137-58020156 None:intergenic 40.0%
CTAACTTATCAGACCAGCAT+AGG - chr4_2:58020139-58020158 None:intergenic 40.0%
CAACTGGGAAGATCATAAGT+AGG + chr4_2:58020193-58020212 Msa0610300:three_prime_UTR 40.0%
GCATCCCGTAATAAACTTGT+GGG - chr4_2:58020264-58020283 None:intergenic 40.0%
TGCATCCCGTAATAAACTTG+TGG - chr4_2:58020265-58020284 None:intergenic 40.0%
ACTCCACACTTCAACAATGG+AGG + chr4_2:58015202-58015221 Msa0610300:exon 45.0%
CTCCACACTTCAACAATGGA+GGG + chr4_2:58015203-58015222 Msa0610300:exon 45.0%
GAAGTTGAAGGTGAAGAGAG+GGG - chr4_2:58015239-58015258 None:intergenic 45.0%
GGTGGTTTAGTAGTGAAGAG+GGG - chr4_2:58015292-58015311 None:intergenic 45.0%
GTGGTGGTTTAGTAGTGAAG+AGG - chr4_2:58015294-58015313 None:intergenic 45.0%
TGGGTTTGGGAAGGAATTTG+GGG - chr4_2:58015331-58015350 None:intergenic 45.0%
GTCTTTGTCGAGTGCTAAAG+TGG - chr4_2:58015408-58015427 None:intergenic 45.0%
!! CGACCGGTTTTATCGAGTTT+AGG - chr4_2:58015476-58015495 None:intergenic 45.0%
AAACGGATGAATGAGCGTAG+AGG + chr4_2:58015665-58015684 Msa0610300:CDS 45.0%
! GTTTTACTCCAGGCTGCAAT+TGG - chr4_2:58016253-58016272 None:intergenic 45.0%
! CATTTTAAGCTGGTGTGGTG+TGG - chr4_2:58016320-58016339 None:intergenic 45.0%
GTGATTGTGTACAGCAGTGA+GGG - chr4_2:58016482-58016501 None:intergenic 45.0%
TAATATCAGGCTGCCACACA+AGG - chr4_2:58017035-58017054 None:intergenic 45.0%
CGTAGTGCAGCTGTAATATC+AGG - chr4_2:58017048-58017067 None:intergenic 45.0%
ATGTTGTCTCATGGGTACCA+AGG - chr4_2:58017104-58017123 None:intergenic 45.0%
! TAAGGAGGGGTACATCCATA+TGG + chr4_2:58017247-58017266 Msa0610300:intron 45.0%
! CTGCTATATACCAGCTTTGG+GGG - chr4_2:58017604-58017623 None:intergenic 45.0%
CCATTGGAATAAGGAGCTGA+GGG - chr4_2:58017811-58017830 None:intergenic 45.0%
TCCATTGGAATAAGGAGCTG+AGG - chr4_2:58017812-58017831 None:intergenic 45.0%
TAGCACTGTGTCATATCTGC+AGG + chr4_2:58017843-58017862 Msa0610300:intron 45.0%
GTCATATCTGCAGGTTCACT+AGG + chr4_2:58017852-58017871 Msa0610300:intron 45.0%
! GGAAACTATTGGTTGCTGTC+AGG + chr4_2:58017873-58017892 Msa0610300:CDS 45.0%
AGTTATCCCACCAAATTGGC+AGG + chr4_2:58017931-58017950 Msa0610300:CDS 45.0%
! TCATTTTGTTCGGAATGCGG+GGG - chr4_2:58017995-58018014 None:intergenic 45.0%
CTTCCCACTAGGTGACAAAA+AGG + chr4_2:58018377-58018396 Msa0610300:intron 45.0%
TGACGTAGAACAGTGATCCT+AGG + chr4_2:58018415-58018434 Msa0610300:intron 45.0%
GACGTAGAACAGTGATCCTA+GGG + chr4_2:58018416-58018435 Msa0610300:intron 45.0%
!! CAAAGTCAAAGGAGTACCCT+AGG - chr4_2:58018435-58018454 None:intergenic 45.0%
! CTAGGGTACTCCTTTGACTT+TGG + chr4_2:58018433-58018452 Msa0610300:intron 45.0%
! TTTAGTGACTTGCACTCAGC+CGG - chr4_2:58018873-58018892 None:intergenic 45.0%
ATGAAAGTGATCGCAGTCTC+GGG - chr4_2:58018921-58018940 None:intergenic 45.0%
! TCGAGTATGGCTTGTAACCA+AGG + chr4_2:58019221-58019240 Msa0610300:intron 45.0%
ACAAAAAATTGGGGTGGCCT+TGG - chr4_2:58019241-58019260 None:intergenic 45.0%
AGGTGTGTGTGTGTATGCTA+GGG - chr4_2:58019477-58019496 None:intergenic 45.0%
!! AATAATAAAAACAAAAAATT+GGG - chr4_2:58019251-58019270 None:intergenic 5.0%
CTCCCTCCATTGTTGAAGTG+TGG - chr4_2:58015208-58015227 None:intergenic 50.0%
AGGTGAAGAGAGGGGAAGTA+AGG - chr4_2:58015231-58015250 None:intergenic 50.0%
GCAAAAGCGGTGGTTGAGTT+TGG - chr4_2:58015267-58015286 None:intergenic 50.0%
GTGAAGAGGGGAAGCAAAAG+CGG - chr4_2:58015280-58015299 None:intergenic 50.0%
!! TCTCTGAAATGCTCTCTCCG+TGG + chr4_2:58015380-58015399 Msa0610300:CDS 50.0%
CGAGTGCTAAAGTGGAACCA+CGG - chr4_2:58015400-58015419 None:intergenic 50.0%
TCTCGGACTACAAAACCGAC+CGG - chr4_2:58015492-58015511 None:intergenic 50.0%
TGCTTCGTGTTTGGAGGGAT+TGG + chr4_2:58015622-58015641 Msa0610300:CDS 50.0%
AAGACTTAGGACTAGGGGTG+TGG + chr4_2:58016183-58016202 Msa0610300:intron 50.0%
GAAGTATGCCAATTGCAGCC+TGG + chr4_2:58016242-58016261 Msa0610300:intron 50.0%
!!! TGTATTTTTGGCCCTCCCAC+AGG + chr4_2:58016393-58016412 Msa0610300:intron 50.0%
!!! GTATTTTTGGCCCTCCCACA+GGG + chr4_2:58016394-58016413 Msa0610300:intron 50.0%
CAACAAAGCAAAGAGGGAGG+TGG - chr4_2:58016446-58016465 None:intergenic 50.0%
ATTGTGTACAGCAGTGAGGG+AGG - chr4_2:58016479-58016498 None:intergenic 50.0%
GGTGATTGTGTACAGCAGTG+AGG - chr4_2:58016483-58016502 None:intergenic 50.0%
CCAATGGGTAGTCGAGATGA+GGG - chr4_2:58016504-58016523 None:intergenic 50.0%
! GGTTGTGGGTAATGGCCAAT+GGG - chr4_2:58016519-58016538 None:intergenic 50.0%
! TGGTTGTGGGTAATGGCCAA+TGG - chr4_2:58016520-58016539 None:intergenic 50.0%
TTTGCTGGGACGTGAGAACT+AGG + chr4_2:58016873-58016892 Msa0610300:intron 50.0%
GATGACGATGAACTGCGTGA+GGG + chr4_2:58016895-58016914 Msa0610300:intron 50.0%
!! CGTGAGGGATTGGCCAATTA+GGG + chr4_2:58016910-58016929 Msa0610300:intron 50.0%
TACAGCTGCACTACGTGATC+TGG + chr4_2:58017053-58017072 Msa0610300:intron 50.0%
TGGTTCTCACTGCAGCAGTT+TGG + chr4_2:58017178-58017197 Msa0610300:intron 50.0%
GCAATGCTTGAGTGGCCATA+TGG - chr4_2:58017265-58017284 None:intergenic 50.0%
GCTGCAAGGACTTCTTCTTC+TGG - chr4_2:58017580-58017599 None:intergenic 50.0%
CCCTCAGCTCCTTATTCCAA+TGG + chr4_2:58017808-58017827 Msa0610300:intron 50.0%
TGGTTGCTGTCAGGGATAGA+TGG + chr4_2:58017882-58017901 Msa0610300:CDS 50.0%
GGTTGCTGTCAGGGATAGAT+GGG + chr4_2:58017883-58017902 Msa0610300:CDS 50.0%
CGTGTACCTGCCAATTTGGT+GGG - chr4_2:58017940-58017959 None:intergenic 50.0%
TCGTGTACCTGCCAATTTGG+TGG - chr4_2:58017941-58017960 None:intergenic 50.0%
! CATTTTGTTCGGAATGCGGG+GGG - chr4_2:58017994-58018013 None:intergenic 50.0%
GAGGTGTGTGTGTGTATGCT+AGG - chr4_2:58019478-58019497 None:intergenic 50.0%
CATTCCAGGAAGAACCAGCA+GGG + chr4_2:58019575-58019594 Msa0610300:intron 50.0%
!! AGCTCTAGAATCTTCCCTGC+TGG - chr4_2:58019592-58019611 None:intergenic 50.0%
!!! TGTTTTGAAGGCGGTGGATC+TGG + chr4_2:58019941-58019960 Msa0610300:intron 50.0%
CTGGCTAAACGGTTCTGTGA+TGG + chr4_2:58019960-58019979 Msa0610300:CDS 50.0%
GCAGCCCCTCGTATCATTAA+TGG + chr4_2:58019984-58020003 Msa0610300:CDS 50.0%
AAGAGGGGAAGCAAAAGCGG+TGG - chr4_2:58015277-58015296 None:intergenic 55.0%
GGAAGTGAGAGTAACGGTGG+TGG - chr4_2:58015310-58015329 None:intergenic 55.0%
TGGGGAAGTGAGAGTAACGG+TGG - chr4_2:58015313-58015332 None:intergenic 55.0%
GCAAGTTCTCTAGCGGCTCT+CGG - chr4_2:58015509-58015528 None:intergenic 55.0%
GTGTTTGGAGGGATTGGACC+CGG + chr4_2:58015628-58015647 Msa0610300:CDS 55.0%
!! AGCAAATAGGGGTGCCCTGT+GGG - chr4_2:58016411-58016430 None:intergenic 55.0%
CCCTCATCTCGACTACCCAT+TGG + chr4_2:58016501-58016520 Msa0610300:intron 55.0%
GCCAATGGGTAGTCGAGATG+AGG - chr4_2:58016505-58016524 None:intergenic 55.0%
GGATGACGATGAACTGCGTG+AGG + chr4_2:58016894-58016913 Msa0610300:intron 55.0%
CGATGAACTGCGTGAGGGAT+TGG + chr4_2:58016900-58016919 Msa0610300:intron 55.0%
!! GCGTGAGGGATTGGCCAATT+AGG + chr4_2:58016909-58016928 Msa0610300:intron 55.0%
TTACAAGCAGCGAGGGAGCT+TGG - chr4_2:58019435-58019454 None:intergenic 55.0%
GCATTCCAGGAAGAACCAGC+AGG + chr4_2:58019574-58019593 Msa0610300:intron 55.0%
!! TCTTCCCTGCTGGTTCTTCC+TGG - chr4_2:58019582-58019601 None:intergenic 55.0%
AGGCGGTGGATCTGGCTAAA+CGG + chr4_2:58019949-58019968 Msa0610300:intron 55.0%
TGGAGGGATTGGACCCGGTT+CGG + chr4_2:58015633-58015652 Msa0610300:CDS 60.0%
!! AATAGGGGTGCCCTGTGGGA+GGG - chr4_2:58016407-58016426 None:intergenic 60.0%
!! AAATAGGGGTGCCCTGTGGG+AGG - chr4_2:58016408-58016427 None:intergenic 60.0%
!! CAGCAAATAGGGGTGCCCTG+TGG - chr4_2:58016412-58016431 None:intergenic 60.0%
AAGCAGCGAGGGAGCTTGGT+TGG - chr4_2:58019431-58019450 None:intergenic 60.0%
!! CCAGCTTTGGGGGAGCTGCA+AGG - chr4_2:58017594-58017613 None:intergenic 65.0%
CCTTGCAGCTCCCCCAAAGC+TGG + chr4_2:58017591-58017610 Msa0610300:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 58015182 58020370 58015182 ID=Msa0610300;Name=Msa0610300
chr4_2 mRNA 58015182 58020370 58015182 ID=Msa0610300-mRNA-1;Parent=Msa0610300;Name=Msa0610300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=36|1|1|1|1|1|7|312|291
chr4_2 exon 58015182 58015531 58015182 ID=Msa0610300-mRNA-1:exon:15169;Parent=Msa0610300-mRNA-1
chr4_2 exon 58015610 58015686 58015610 ID=Msa0610300-mRNA-1:exon:15170;Parent=Msa0610300-mRNA-1
chr4_2 exon 58015765 58015899 58015765 ID=Msa0610300-mRNA-1:exon:15171;Parent=Msa0610300-mRNA-1
chr4_2 exon 58017581 58017635 58017581 ID=Msa0610300-mRNA-1:exon:15172;Parent=Msa0610300-mRNA-1
chr4_2 exon 58017865 58017952 58017865 ID=Msa0610300-mRNA-1:exon:15173;Parent=Msa0610300-mRNA-1
chr4_2 exon 58019583 58019681 58019583 ID=Msa0610300-mRNA-1:exon:15174;Parent=Msa0610300-mRNA-1
chr4_2 exon 58019951 58020370 58019951 ID=Msa0610300-mRNA-1:exon:15175;Parent=Msa0610300-mRNA-1
chr4_2 five_prime_UTR 58015182 58015217 58015182 ID=Msa0610300-mRNA-1:five_prime_utr;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58015218 58015531 58015218 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58015610 58015686 58015610 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58015765 58015899 58015765 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58017581 58017635 58017581 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58017865 58017952 58017865 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58019583 58019681 58019583 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 CDS 58019951 58020058 58019951 ID=Msa0610300-mRNA-1:cds;Parent=Msa0610300-mRNA-1
chr4_2 three_prime_UTR 58020059 58020370 58020059 ID=Msa0610300-mRNA-1:three_prime_utr;Parent=Msa0610300-mRNA-1
Gene Sequence

>Msa0610300

ATGGAGGGAGCCTTACTTCCCCTCTCTTCACCTTCAACTTCTTCTTCCAAACTCAACCACCGCTTTTGCTTCCCCTCTTCACTACTAAACCACCACCGTTACTCTCACTTCCCCAAATTCCTTCCCAAACCCAAAATTAACACCGCTACTTCATCACCTTTATCTCTGAAATGCTCTCTCCGTGGTTCCACTTTAGCACTCGACAAAGACGAAACTTCTGTCTCAGAAATAACTGATAACTCTTCAATTTCTTTGCCTAAACTCGATAAAACCGGTCGGTTTTGTAGTCCGAGAGCCGCTAGAGAACTTGCTCTGTCTATAATTTATGCTTCGTGTTTGGAGGGATTGGACCCGGTTCGGTTATTTGAGAAACGGATGAATGAGCGTAGAGAGGTTGGTTATGAATTTAACAAGGACAAATTGTTGGAGTATAATCACATGAGTTTCGGAGGGCCACCTGTTATCGTTGAAACAGATGAAGAAGCTAATGAACTTCTAAGGAACATTCAACTCGAGTCTGCAATTGAAGAAGAAGTCCTTGCAGCTCCCCCAAAGCTGGTATATAGCAGATTGATTTTGAGGTTCACTAGGAAACTATTGGTTGCTGTCAGGGATAGATGGGACAGTCACGTCCCTGTCATTAACAAAGTTATCCCACCAAATTGGCAGGAAGAACCAGCAGGGAAGATTCTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAAATAGCTATGCTAGACACCAGACACCAAATCGTCATTAACGAGGCGGTGGATCTGGCTAAACGGTTCTGTGATGGAGCAGCCCCTCGTATCATTAATGGCTGTCTACGCACATTTTACCGAGATTTGGAGGCATCAAATAATAGGGTTTAG

Protein sequence

>Msa0610300

MEGALLPLSSPSTSSSKLNHRFCFPSSLLNHHRYSHFPKFLPKPKINTATSSPLSLKCSLRGSTLALDKDETSVSEITDNSSISLPKLDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRMNERREVGYEFNKDKLLEYNHMSFGGPPVIVETDEEANELLRNIQLESAIEEEVLAAPPKLVYSRLILRFTRKLLVAVRDRWDSHVPVINKVIPPNWQEEPAGKILELSILHLAMSEIAMLDTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFYRDLEASNNRV*