AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0233200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233200 MtrunA17_Chr2g0280611 93.991 233 12 1 1 231 1 233 2.88e-164 452
Msa0233200 MtrunA17_Chr4g0067641 62.727 110 41 0 75 184 79 188 3.61e-49 162
Msa0233200 MtrunA17_Chr1g0166671 52.518 139 58 2 79 209 76 214 7.96e-45 149
Msa0233200 MtrunA17_Chr1g0187251 48.921 139 63 3 79 209 94 232 6.47e-42 142
Msa0233200 MtrunA17_Chr2g0277431 55.039 129 57 1 76 203 115 243 4.09e-41 146
Msa0233200 MtrunA17_Chr2g0316311 51.261 119 52 2 75 193 85 197 1.88e-36 131
Msa0233200 MtrunA17_Chr1g0148081 36.150 213 107 5 1 211 28 213 4.33e-36 129
Msa0233200 MtrunA17_Chr6g0467031 33.758 157 86 3 23 178 30 169 7.31e-24 94.4
Msa0233200 MtrunA17_Chr2g0316321 43.564 101 42 4 75 175 74 159 1.15e-20 85.1
Msa0233200 MtrunA17_Chr1g0198431 32.432 111 75 0 74 184 68 178 4.70e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0233200 AT1G11430.1 83.889 180 28 1 51 229 53 232 4.62e-109 313
Msa0233200 AT3G06790.2 62.727 110 40 1 75 184 84 192 1.81e-46 154
Msa0233200 AT3G06790.1 62.727 110 40 1 75 184 84 192 2.19e-46 154
Msa0233200 AT1G32580.1 50.355 141 59 3 79 209 87 226 3.16e-43 145
Msa0233200 AT2G35240.1 56.604 106 46 0 79 184 90 195 4.60e-42 143
Msa0233200 AT4G20020.2 60.550 109 41 2 76 182 78 186 1.77e-38 138
Msa0233200 AT4G20020.1 60.550 109 41 2 76 182 78 186 2.83e-38 137
Msa0233200 AT5G44780.1 59.633 109 43 1 82 189 79 187 4.22e-37 137
Msa0233200 AT3G15000.1 48.739 119 55 2 75 193 87 199 1.31e-34 127
Msa0233200 AT1G72530.1 42.453 106 60 1 79 184 48 152 4.06e-29 108
Msa0233200 AT1G72530.2 39.370 127 68 3 66 184 31 156 7.14e-27 102
Msa0233200 AT3G20930.2 30.769 117 79 1 61 175 147 263 7.46e-14 70.5
Msa0233200 AT3G20930.2 32.955 88 59 0 86 173 71 158 5.01e-12 65.1
Msa0233200 AT3G20930.1 30.769 117 79 1 61 175 147 263 7.62e-14 70.1
Msa0233200 AT3G20930.1 32.955 88 59 0 86 173 71 158 5.43e-12 64.7
Msa0233200 AT1G53260.2 49.254 67 29 1 127 193 3 64 3.46e-13 67.0
Msa0233200 AT1G53260.1 51.724 58 28 0 127 184 3 60 5.56e-13 67.0
Msa0233200 AT5G44780.2 59.184 49 18 1 141 189 2 48 7.94e-11 61.6

Find 96 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGATTTGATAATATTTA+TGG 0.128227 2_2:-5512012 Msa0233200:three_prime_UTR
ATAGGTTAGGGTTAGGGTTT+TGG 0.172019 2_2:+5514653 None:intergenic
TTGAATTCGGATAGGGTTTC+GGG 0.228428 2_2:+5514572 None:intergenic
ATAATATTTATGGCCCTATA+TGG 0.242864 2_2:-5512002 Msa0233200:three_prime_UTR
TAGGTTTGCCTGGTGTTCTC+TGG 0.252246 2_2:-5513003 Msa0233200:CDS
TCGGATAGGGTTTCGGGAAT+TGG 0.264768 2_2:+5514578 None:intergenic
CTCTTTGATCCACTGCGTTT+TGG 0.276909 2_2:+5512788 None:intergenic
AGGGATGGCCCTCCTGCTGC+TGG 0.277213 2_2:-5512740 Msa0233200:CDS
CTTGAATTCGGATAGGGTTT+CGG 0.277711 2_2:+5514571 None:intergenic
GAAGTTGAAACTTGGGGTTT+TGG 0.278259 2_2:+5514626 None:intergenic
ATCTTAGGAATATGTGCTTT+TGG 0.283908 2_2:-5512231 Msa0233200:three_prime_UTR
TTGATAATGCCGCGTGATTA+AGG 0.292956 2_2:+5512358 None:intergenic
AGGGTTTCGGGAATTGGGTT+TGG 0.293537 2_2:+5514584 None:intergenic
TATGGGTTTGAGCAGCTTCT+AGG 0.303429 2_2:+5512323 None:intergenic
TGGGATGATAGGTTAGGGTT+AGG 0.303465 2_2:+5514646 None:intergenic
TTCATATTCTAACACATCTA+TGG 0.308742 2_2:+5511966 None:intergenic
TGTTAGGGTTGTTTGTAATT+TGG 0.316234 2_2:-5512176 Msa0233200:three_prime_UTR
GCTGTCTCTTGTCTTGGCTT+TGG 0.323442 2_2:+5512713 None:intergenic
GGAGGAACGATCCTTTGTTT+TGG 0.326208 2_2:+5512379 None:intergenic
GGGATGATAGGTTAGGGTTA+GGG 0.334623 2_2:+5514647 None:intergenic
TGAGATGTAAGACTGGTGTT+AGG 0.342528 2_2:-5512192 Msa0233200:three_prime_UTR
TTGTCTTCCATCTCTCAAAA+TGG 0.346471 2_2:-5514703 Msa0233200:CDS
CAAACTCTTGCCACTGTCTT+GGG 0.352865 2_2:-5514390 Msa0233200:CDS
CGGATAGGGTTTCGGGAATT+GGG 0.358641 2_2:+5514579 None:intergenic
CAATCATTGGCTTATTGTAA+TGG 0.359191 2_2:-5514466 Msa0233200:CDS
CATCTAGTGAGAATTCAATA+TGG 0.361008 2_2:+5512305 None:intergenic
CTGGTTGTGATTACAATCAT+TGG 0.368609 2_2:-5514479 Msa0233200:CDS
GTTACTCATGATACCCATAT+AGG 0.381685 2_2:+5511988 None:intergenic
GAGGCAGCTGTCTCTTGTCT+TGG 0.382851 2_2:+5512707 None:intergenic
TCAAACTCTTGCCACTGTCT+TGG 0.389785 2_2:-5514391 Msa0233200:CDS
GGCATGTCACAAATTATCTT+AGG 0.393627 2_2:-5512246 Msa0233200:three_prime_UTR
GTATGTATTAGCTTTCTTAA+CGG 0.396600 2_2:-5512030 Msa0233200:three_prime_UTR
GCGAGAGGGTGCAGGATCCT+TGG 0.397568 2_2:+5514437 None:intergenic
GGCTTTGGACGCCCAGCAGC+AGG 0.406073 2_2:+5512728 None:intergenic
GTCCTGCTTATAGGTTTGCC+TGG 0.407569 2_2:-5513013 Msa0233200:intron
TTAACATCTATGTATGAGTC+TGG 0.410565 2_2:+5512974 None:intergenic
AGAGGATTGAAGTTGAAACT+TGG 0.412741 2_2:+5514618 None:intergenic
CATCCAATACTGCTTGAATT+CGG 0.416464 2_2:+5514559 None:intergenic
TAGGTGACAAGTACATCAAC+GGG 0.417308 2_2:-5512844 Msa0233200:CDS
GAACACATAAAGTGACTGAT+AGG 0.418366 2_2:-5512137 Msa0233200:three_prime_UTR
AGGTTTGCCTGGTGTTCTCT+GGG 0.419184 2_2:-5513002 Msa0233200:CDS
GATCAAAGAGTGACGGTAGA+AGG 0.423075 2_2:-5512775 Msa0233200:CDS
GAGGATTGAAGTTGAAACTT+GGG 0.426358 2_2:+5514619 None:intergenic
TTACTCATGATACCCATATA+GGG 0.435497 2_2:+5511989 None:intergenic
CGAGAGGGTGCAGGATCCTT+GGG 0.445990 2_2:+5514438 None:intergenic
TAATATTTATGGCCCTATAT+GGG 0.449685 2_2:-5512001 Msa0233200:three_prime_UTR
AAGTTTACAGCATACTCAAA+AGG 0.460909 2_2:-5512268 Msa0233200:three_prime_UTR
CAAGTTTGTAACAATGCCAT+TGG 0.468053 2_2:+5514723 None:intergenic
ATCTAGTGAGAATTCAATAT+GGG 0.478721 2_2:+5512306 None:intergenic
CAATGTGCATATTTAGCTCT+AGG 0.491786 2_2:-5512094 Msa0233200:three_prime_UTR
TATCCGAATTCAAGCAGTAT+TGG 0.493381 2_2:-5514562 Msa0233200:CDS
AGTGTAAGTTGTGGTGCTAA+AGG 0.493962 2_2:+5513163 None:intergenic
ATCAATCATTTGCTCGCGAG+AGG 0.499639 2_2:+5514422 None:intergenic
GGGATGGCCCTCCTGCTGCT+GGG 0.501985 2_2:-5512739 Msa0233200:CDS
AGCAACCTCTGAGAAATTCA+AGG 0.504768 2_2:-5513117 Msa0233200:CDS
ATTTGCTCGCGAGAGGGTGC+AGG 0.511963 2_2:+5514429 None:intergenic
TTTGGACGCCCAGCAGCAGG+AGG 0.512472 2_2:+5512731 None:intergenic
ATACTGCTTGAATTCGGATA+GGG 0.516734 2_2:+5514565 None:intergenic
ACATACTTGTATGCTTATCA+TGG 0.518163 2_2:+5512047 None:intergenic
TTTAGCACCACAACTTACAC+TGG 0.519722 2_2:-5513161 Msa0233200:CDS
GGTTTGGATTTGATAGAGAG+AGG 0.523232 2_2:+5514600 None:intergenic
AATACTGCTTGAATTCGGAT+AGG 0.526486 2_2:+5514564 None:intergenic
AGTTTACAGCATACTCAAAA+GGG 0.531650 2_2:-5512267 Msa0233200:three_prime_UTR
GAGATGTAAGACTGGTGTTA+GGG 0.538851 2_2:-5512191 Msa0233200:three_prime_UTR
ACTTGTATGCTTATCATGGC+TGG 0.540012 2_2:+5512051 None:intergenic
CTCTTGCCACTGTCTTGGGA+AGG 0.548600 2_2:-5514386 Msa0233200:intron
ATATTTAGCTCTAGGTGTCA+TGG 0.550047 2_2:-5512086 Msa0233200:three_prime_UTR
TATTGTAATGGAGTTTCCCA+AGG 0.561619 2_2:-5514454 Msa0233200:CDS
TTAGAGTAATTCCAAAACAA+AGG 0.563390 2_2:-5512390 Msa0233200:three_prime_UTR
GAGAGTCTTATCATTTCCAA+TGG 0.571929 2_2:-5514739 Msa0233200:exon
AGGATTGAAGTTGAAACTTG+GGG 0.575115 2_2:+5514620 None:intergenic
TTATTTATGAGATGTAAGAC+TGG 0.585810 2_2:-5512199 Msa0233200:three_prime_UTR
GGAAGTACCCAGAGAACACC+AGG 0.587562 2_2:+5512995 None:intergenic
TTAGGTGACAAGTACATCAA+CGG 0.594359 2_2:-5512845 Msa0233200:intron
AGGTATGAGAGACGGAGGGA+TGG 0.596674 2_2:-5512755 Msa0233200:CDS
GCAACCTCTGAGAAATTCAA+GGG 0.607102 2_2:-5513116 Msa0233200:intron
CGCAGTGGATCAAAGAGTGA+CGG 0.608782 2_2:-5512782 Msa0233200:CDS
CAAAACTGAAAATCACCTGA+AGG 0.609010 2_2:+5512414 None:intergenic
TCAATCATTTGCTCGCGAGA+GGG 0.612753 2_2:+5514423 None:intergenic
CAATGATTGTAATCACAACC+AGG 0.618731 2_2:+5514480 None:intergenic
GAATGGATTACCTCATGTAG+AGG 0.619432 2_2:+5512676 None:intergenic
ACGGTAGAAGGTATGAGAGA+CGG 0.623361 2_2:-5512763 Msa0233200:CDS
TTGGACGCCCAGCAGCAGGA+GGG 0.625944 2_2:+5512732 None:intergenic
AGAGAGACAATTATGCTACC+TGG 0.627529 2_2:-5514498 Msa0233200:CDS
TCATGTAGAGGATGAATCTG+AGG 0.630035 2_2:+5512688 None:intergenic
TCAGATTCATCCTCTACATG+AGG 0.646621 2_2:-5512686 Msa0233200:intron
TGATAAGTAGGGTACTTGCA+AGG 0.653678 2_2:+5512812 None:intergenic
GTAGAAGGTATGAGAGACGG+AGG 0.663095 2_2:-5512760 Msa0233200:CDS
ATTACCCTTGAATTTCTCAG+AGG 0.665837 2_2:+5513112 None:intergenic
ATCGTTCCTCCTTAATCACG+CGG 0.684927 2_2:-5512367 Msa0233200:three_prime_UTR
TAGAAGGTATGAGAGACGGA+GGG 0.692634 2_2:-5512759 Msa0233200:CDS
ACTTATCAACCAAAACGCAG+TGG 0.704807 2_2:-5512797 Msa0233200:CDS
ATAGAACCTTCCCAAGACAG+TGG 0.708042 2_2:+5514380 None:intergenic
CTGAAATCCAGTGTAAGTTG+TGG 0.717652 2_2:+5513154 None:intergenic
ATAATGCCGCGTGATTAAGG+AGG 0.725292 2_2:+5512361 None:intergenic
AGGTGACAAGTACATCAACG+GGG 0.822250 2_2:-5512843 Msa0233200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTGTTAAATG+AGG - chr2_2:5512369-5512388 Msa0233200:three_prime_UTR 10.0%
!!! TTTTTTTTTTTGTTAAATGA+GGG - chr2_2:5512370-5512389 Msa0233200:three_prime_UTR 10.0%
!! TATTATTGTAAATAAAAAGT+TGG - chr2_2:5513269-5513288 Msa0233200:intron 10.0%
!!! TATCAATTCTTTTAAATTTT+AGG - chr2_2:5513787-5513806 Msa0233200:intron 10.0%
!!! TTTTATTGATTGTGTTTTAA+AGG - chr2_2:5512456-5512475 Msa0233200:intron 15.0%
!!! AATTAAGTGTTTTAAATGAT+TGG - chr2_2:5512781-5512800 Msa0233200:CDS 15.0%
!! TATTATATATGGTTCTTATT+AGG - chr2_2:5513037-5513056 Msa0233200:intron 15.0%
!! ATTATATATGGTTCTTATTA+GGG - chr2_2:5513038-5513057 Msa0233200:intron 15.0%
!! AAACAAAATTAGAAGCAAAA+GGG + chr2_2:5512301-5512320 None:intergenic 20.0%
!! AAAACAAAATTAGAAGCAAA+AGG + chr2_2:5512302-5512321 None:intergenic 20.0%
!! ATATTGAACTATCTTTCATT+TGG + chr2_2:5512945-5512964 None:intergenic 20.0%
!! AAATCGCATACTATTATATA+TGG - chr2_2:5513026-5513045 Msa0233200:intron 20.0%
!! GTTAGAAGTAAAAATATCTA+CGG - chr2_2:5513157-5513176 Msa0233200:CDS 20.0%
!!! ATTGTAAATAAAAAGTTGGT+TGG - chr2_2:5513273-5513292 Msa0233200:intron 20.0%
!!! TAATAATGGATTCTATTTTG+TGG - chr2_2:5513313-5513332 Msa0233200:intron 20.0%
!!! AATAATGGATTCTATTTTGT+GGG - chr2_2:5513314-5513333 Msa0233200:intron 20.0%
!! GATGTTAAAAATAAAGACTA+CGG - chr2_2:5513691-5513710 Msa0233200:intron 20.0%
!!! TTCTCATTGATAGTTTATAT+AGG + chr2_2:5514059-5514078 None:intergenic 20.0%
!! ATATAAACTATCAATGAGAA+TGG - chr2_2:5514059-5514078 Msa0233200:intron 20.0%
!! TATAAACTATCAATGAGAAT+GGG - chr2_2:5514060-5514079 Msa0233200:intron 20.0%
!!! AACGGATTTGATAATATTTA+TGG - chr2_2:5514638-5514657 Msa0233200:CDS 20.0%
! AACAAAATTAGAAGCAAAAG+GGG + chr2_2:5512300-5512319 None:intergenic 25.0%
!! CTTTGTTTCAATTTGGAAAT+TGG - chr2_2:5512485-5512504 Msa0233200:intron 25.0%
! TTTCAATTTGGAAATTGGAA+TGG - chr2_2:5512490-5512509 Msa0233200:intron 25.0%
! TATACATATAGCAATAGTGT+CGG - chr2_2:5512555-5512574 Msa0233200:intron 25.0%
!!! ATTTTGTTTAGACTTTAGCA+TGG - chr2_2:5512590-5512609 Msa0233200:intron 25.0%
! ATGAAATGGAAGAATATTCT+AGG - chr2_2:5512639-5512658 Msa0233200:intron 25.0%
! ATGGTATACAATGGTAATAA+TGG - chr2_2:5513299-5513318 Msa0233200:intron 25.0%
!!! ATAATGGATTCTATTTTGTG+GGG - chr2_2:5513315-5513334 Msa0233200:intron 25.0%
! AATAGTAATAGATGTGTTTG+TGG - chr2_2:5513424-5513443 Msa0233200:intron 25.0%
!!! TTAGTGATAAGATTTTCAAG+AGG + chr2_2:5513766-5513785 None:intergenic 25.0%
! TAGGTATAACTTAACATATC+AGG + chr2_2:5514040-5514059 None:intergenic 25.0%
! TTAGAGTAATTCCAAAACAA+AGG - chr2_2:5514260-5514279 Msa0233200:intron 25.0%
! ATCTAGTGAGAATTCAATAT+GGG + chr2_2:5514347-5514366 None:intergenic 25.0%
! TTATTTATGAGATGTAAGAC+TGG - chr2_2:5514451-5514470 Msa0233200:CDS 25.0%
!!! GTATGTATTAGCTTTCTTAA+CGG - chr2_2:5514620-5514639 Msa0233200:CDS 25.0%
! ATAATATTTATGGCCCTATA+TGG - chr2_2:5514648-5514667 Msa0233200:CDS 25.0%
! TAATATTTATGGCCCTATAT+GGG - chr2_2:5514649-5514668 Msa0233200:CDS 25.0%
! TTCATATTCTAACACATCTA+TGG + chr2_2:5514687-5514706 None:intergenic 25.0%
!! CAATCATTGGCTTATTGTAA+TGG - chr2_2:5512184-5512203 Msa0233200:three_prime_UTR 30.0%
!! GTGAAAGCTTTGTTTCAATT+TGG - chr2_2:5512478-5512497 Msa0233200:intron 30.0%
TGGTTCAAATATGACTCAAT+TGG - chr2_2:5512610-5512629 Msa0233200:intron 30.0%
GGTTCAAATATGACTCAATT+GGG - chr2_2:5512611-5512630 Msa0233200:intron 30.0%
!! GTGTTTTAAATGATTGGTCA+CGG - chr2_2:5512787-5512806 Msa0233200:CDS 30.0%
!! TGTTTTAAATGATTGGTCAC+GGG - chr2_2:5512788-5512807 Msa0233200:CDS 30.0%
AACAGAATCATTAGAGAAGT+AGG - chr2_2:5512836-5512855 Msa0233200:CDS 30.0%
ACAGAATCATTAGAGAAGTA+GGG - chr2_2:5512837-5512856 Msa0233200:CDS 30.0%
AAGTAGGGTAGTACAAATTA+CGG - chr2_2:5512852-5512871 Msa0233200:intron 30.0%
TAACTTGAAACCTTTCTAGA+AGG + chr2_2:5513007-5513026 None:intergenic 30.0%
AGTTTATAGAAGCTACTAAG+TGG - chr2_2:5513124-5513143 Msa0233200:CDS 30.0%
! AAATTCTTTTCCCACAAGAT+GGG + chr2_2:5513246-5513265 None:intergenic 30.0%
!! ATAAAAAGTTGGTTGGTGAA+TGG - chr2_2:5513280-5513299 Msa0233200:intron 30.0%
!!! TAATGGATTCTATTTTGTGG+GGG - chr2_2:5513316-5513335 Msa0233200:intron 30.0%
!!! GGATTTTGTTTTGTTCAACA+TGG - chr2_2:5513359-5513378 Msa0233200:intron 30.0%
! TTTGTTCAACATGGTAATGA+TGG - chr2_2:5513368-5513387 Msa0233200:intron 30.0%
TCAAGGGTAATGTTTCAATT+CGG - chr2_2:5513550-5513569 Msa0233200:intron 30.0%
TTAACATCTATGTATGAGTC+TGG + chr2_2:5513679-5513698 None:intergenic 30.0%
GTTAAAAATAAAGACTACGG+AGG - chr2_2:5513694-5513713 Msa0233200:intron 30.0%
TATTGAGCGCATGAAAAATT+AGG + chr2_2:5513738-5513757 None:intergenic 30.0%
CATCTAGTGAGAATTCAATA+TGG + chr2_2:5514348-5514367 None:intergenic 30.0%
AAGTTTACAGCATACTCAAA+AGG - chr2_2:5514382-5514401 Msa0233200:intron 30.0%
AGTTTACAGCATACTCAAAA+GGG - chr2_2:5514383-5514402 Msa0233200:intron 30.0%
! ATCTTAGGAATATGTGCTTT+TGG - chr2_2:5514419-5514438 Msa0233200:CDS 30.0%
TGTTAGGGTTGTTTGTAATT+TGG - chr2_2:5514474-5514493 Msa0233200:CDS 30.0%
ACATACTTGTATGCTTATCA+TGG + chr2_2:5514606-5514625 None:intergenic 30.0%
TTACTCATGATACCCATATA+GGG + chr2_2:5514664-5514683 None:intergenic 30.0%
! GAGAGTCTTATCATTTCCAA+TGG - chr2_2:5511911-5511930 Msa0233200:three_prime_UTR 35.0%
CAAGTTTGTAACAATGCCAT+TGG + chr2_2:5511930-5511949 None:intergenic 35.0%
TTGTCTTCCATCTCTCAAAA+TGG - chr2_2:5511947-5511966 Msa0233200:three_prime_UTR 35.0%
!! ATTGTAGCCATTTTGAGAGA+TGG + chr2_2:5511957-5511976 None:intergenic 35.0%
! AAGTTGAAACTTGGGGTTTT+GGG + chr2_2:5512026-5512045 None:intergenic 35.0%
AGGATTGAAGTTGAAACTTG+GGG + chr2_2:5512033-5512052 None:intergenic 35.0%
GAGGATTGAAGTTGAAACTT+GGG + chr2_2:5512034-5512053 None:intergenic 35.0%
AGAGGATTGAAGTTGAAACT+TGG + chr2_2:5512035-5512054 None:intergenic 35.0%
ATACTGCTTGAATTCGGATA+GGG + chr2_2:5512088-5512107 None:intergenic 35.0%
AATACTGCTTGAATTCGGAT+AGG + chr2_2:5512089-5512108 None:intergenic 35.0%
TATCCGAATTCAAGCAGTAT+TGG - chr2_2:5512088-5512107 Msa0233200:three_prime_UTR 35.0%
CATCCAATACTGCTTGAATT+CGG + chr2_2:5512094-5512113 None:intergenic 35.0%
CAATGATTGTAATCACAACC+AGG + chr2_2:5512173-5512192 None:intergenic 35.0%
CTGGTTGTGATTACAATCAT+TGG - chr2_2:5512171-5512190 Msa0233200:three_prime_UTR 35.0%
! TATTGTAATGGAGTTTCCCA+AGG - chr2_2:5512196-5512215 Msa0233200:three_prime_UTR 35.0%
!! AGGGTTTTGTAGTTGTTTGT+AGG - chr2_2:5512389-5512408 Msa0233200:three_prime_UTR 35.0%
TCAATTGGGCTACTATGAAA+TGG - chr2_2:5512625-5512644 Msa0233200:intron 35.0%
TCCTAATCATGTCTTGTCTT+CGG + chr2_2:5512817-5512836 None:intergenic 35.0%
! AATTACGGTAGTCTCGTTTT+AGG - chr2_2:5512867-5512886 Msa0233200:intron 35.0%
ATCCTCAAGGATACTTCTAT+AGG + chr2_2:5512916-5512935 None:intergenic 35.0%
!! TATAGAAGTATCCTTGAGGA+TGG - chr2_2:5512915-5512934 Msa0233200:intron 35.0%
GTTGTGACCAAGGAAAATTA+TGG - chr2_2:5512975-5512994 Msa0233200:CDS 35.0%
TGAGTTTGAGAACTTAGACA+TGG - chr2_2:5513197-5513216 Msa0233200:intron 35.0%
! CAAATTCTTTTCCCACAAGA+TGG + chr2_2:5513247-5513266 None:intergenic 35.0%
CATCTTGTGGGAAAAGAATT+TGG - chr2_2:5513245-5513264 Msa0233200:intron 35.0%
GACTTGTATGTGGAAAACAA+TGG - chr2_2:5513338-5513357 Msa0233200:intron 35.0%
TATTGTATTCAGCATTGCAC+AGG + chr2_2:5513408-5513427 None:intergenic 35.0%
ATTACCCTTGAATTTCTCAG+AGG + chr2_2:5513541-5513560 None:intergenic 35.0%
GACAATCTTGTGAAGTTTCT+TGG - chr2_2:5513581-5513600 Msa0233200:intron 35.0%
TTTATGCTTGTCCTGCTTAT+AGG - chr2_2:5513628-5513647 Msa0233200:intron 35.0%
TTAGGTGACAAGTACATCAA+CGG - chr2_2:5513805-5513824 Msa0233200:intron 35.0%
!!! TGCGTTTTGGTTGATAAGTA+GGG + chr2_2:5513852-5513871 None:intergenic 35.0%
CAAATGAACTTCCATCTCAA+AGG + chr2_2:5514089-5514108 None:intergenic 35.0%
ATGTGATTAACAACATGCAC+GGG + chr2_2:5514173-5514192 None:intergenic 35.0%
GATGTGATTAACAACATGCA+CGG + chr2_2:5514174-5514193 None:intergenic 35.0%
CAAAACTGAAAATCACCTGA+AGG + chr2_2:5514239-5514258 None:intergenic 35.0%
GGCATGTCACAAATTATCTT+AGG - chr2_2:5514404-5514423 Msa0233200:CDS 35.0%
GAACACATAAAGTGACTGAT+AGG - chr2_2:5514513-5514532 Msa0233200:CDS 35.0%
!! CAATGTGCATATTTAGCTCT+AGG - chr2_2:5514556-5514575 Msa0233200:CDS 35.0%
!! ATATTTAGCTCTAGGTGTCA+TGG - chr2_2:5514564-5514583 Msa0233200:CDS 35.0%
GTTACTCATGATACCCATAT+AGG + chr2_2:5514665-5514684 None:intergenic 35.0%
! TAGGTTAGGGTTAGGGTTTT+GGG + chr2_2:5511999-5512018 None:intergenic 40.0%
! ATAGGTTAGGGTTAGGGTTT+TGG + chr2_2:5512000-5512019 None:intergenic 40.0%
!!! GGTTTTGGGATGATAGGTTA+GGG + chr2_2:5512012-5512031 None:intergenic 40.0%
! GAAGTTGAAACTTGGGGTTT+TGG + chr2_2:5512027-5512046 None:intergenic 40.0%
GGTTTGGATTTGATAGAGAG+AGG + chr2_2:5512053-5512072 None:intergenic 40.0%
TTGAATTCGGATAGGGTTTC+GGG + chr2_2:5512081-5512100 None:intergenic 40.0%
CTTGAATTCGGATAGGGTTT+CGG + chr2_2:5512082-5512101 None:intergenic 40.0%
AGAGAGACAATTATGCTACC+TGG - chr2_2:5512152-5512171 Msa0233200:three_prime_UTR 40.0%
TGTAGTTGTTTGTAGGCACA+TGG - chr2_2:5512396-5512415 Msa0233200:three_prime_UTR 40.0%
GTAGTTGTTTGTAGGCACAT+GGG - chr2_2:5512397-5512416 Msa0233200:three_prime_UTR 40.0%
! TTTGTAGGCACATGGGTTTT+GGG - chr2_2:5512404-5512423 Msa0233200:three_prime_UTR 40.0%
ACCGAAGACAAGACATGATT+AGG - chr2_2:5512813-5512832 Msa0233200:CDS 40.0%
!! TAGTCTCGTTTTAGGTGGTT+TGG - chr2_2:5512875-5512894 Msa0233200:intron 40.0%
!! GACCTATAGAAGTATCCTTG+AGG - chr2_2:5512911-5512930 Msa0233200:intron 40.0%
TTAGAGACAAGTTGTGACCA+AGG - chr2_2:5512965-5512984 Msa0233200:CDS 40.0%
! GCTTGGACCATAATTTTCCT+TGG + chr2_2:5512985-5513004 None:intergenic 40.0%
! TGAAACCTTTCTAGAAGGCT+TGG + chr2_2:5513002-5513021 None:intergenic 40.0%
CATACTACATGGATCACATG+AGG + chr2_2:5513071-5513090 None:intergenic 40.0%
TGATCCATGTAGTATGTCTC+TGG - chr2_2:5513075-5513094 Msa0233200:intron 40.0%
CATGTAGTATGTCTCTGGTA+GGG - chr2_2:5513080-5513099 Msa0233200:intron 40.0%
ATGGAACCTAACAACCTAGT+AGG - chr2_2:5513216-5513235 Msa0233200:intron 40.0%
TGGAACCTAACAACCTAGTA+GGG - chr2_2:5513217-5513236 Msa0233200:intron 40.0%
!! GGTTGGTGAATGGTATACAA+TGG - chr2_2:5513290-5513309 Msa0233200:intron 40.0%
TTTGTGGTTGTGTATCAGCA+TGG - chr2_2:5513440-5513459 Msa0233200:intron 40.0%
! AGTGTAAGTTGTGGTGCTAA+AGG + chr2_2:5513490-5513509 None:intergenic 40.0%
TTTAGCACCACAACTTACAC+TGG - chr2_2:5513489-5513508 Msa0233200:intron 40.0%
CTGAAATCCAGTGTAAGTTG+TGG + chr2_2:5513499-5513518 None:intergenic 40.0%
! AGCAACCTCTGAGAAATTCA+AGG - chr2_2:5513533-5513552 Msa0233200:intron 40.0%
! GCAACCTCTGAGAAATTCAA+GGG - chr2_2:5513534-5513553 Msa0233200:intron 40.0%
TAGGTGACAAGTACATCAAC+GGG - chr2_2:5513806-5513825 Msa0233200:intron 40.0%
! TGATAAGTAGGGTACTTGCA+AGG + chr2_2:5513841-5513860 None:intergenic 40.0%
!!! CTGCGTTTTGGTTGATAAGT+AGG + chr2_2:5513853-5513872 None:intergenic 40.0%
ACTTATCAACCAAAACGCAG+TGG - chr2_2:5513853-5513872 Msa0233200:intron 40.0%
TCATGTAGAGGATGAATCTG+AGG + chr2_2:5513965-5513984 None:intergenic 40.0%
TCAGATTCATCCTCTACATG+AGG - chr2_2:5513964-5513983 Msa0233200:intron 40.0%
!! GAATGGATTACCTCATGTAG+AGG + chr2_2:5513977-5513996 None:intergenic 40.0%
! AGAATGGGATTCCTTTGAGA+TGG - chr2_2:5514075-5514094 Msa0233200:intron 40.0%
TGAGATGGAAGTTCATTTGC+TGG - chr2_2:5514090-5514109 Msa0233200:intron 40.0%
GAGATGGAAGTTCATTTGCT+GGG - chr2_2:5514091-5514110 Msa0233200:intron 40.0%
ACATGCACGGGAAAAACTAA+TGG + chr2_2:5514161-5514180 None:intergenic 40.0%
!! TTACTTTTGTTGCAGCCTTC+AGG - chr2_2:5514221-5514240 Msa0233200:intron 40.0%
!! TTGATAATGCCGCGTGATTA+AGG + chr2_2:5514295-5514314 None:intergenic 40.0%
TGAGATGTAAGACTGGTGTT+AGG - chr2_2:5514458-5514477 Msa0233200:CDS 40.0%
! GAGATGTAAGACTGGTGTTA+GGG - chr2_2:5514459-5514478 Msa0233200:CDS 40.0%
ACTTGTATGCTTATCATGGC+TGG + chr2_2:5514602-5514621 None:intergenic 40.0%
! AGGTTAGGGTTAGGGTTTTG+GGG + chr2_2:5511998-5512017 None:intergenic 45.0%
GGGATGATAGGTTAGGGTTA+GGG + chr2_2:5512006-5512025 None:intergenic 45.0%
TGGGATGATAGGTTAGGGTT+AGG + chr2_2:5512007-5512026 None:intergenic 45.0%
!!! GGGTTTTGGGATGATAGGTT+AGG + chr2_2:5512013-5512032 None:intergenic 45.0%
!!! ACTTGGGGTTTTGGGATGAT+AGG + chr2_2:5512018-5512037 None:intergenic 45.0%
TCAATCATTTGCTCGCGAGA+GGG + chr2_2:5512230-5512249 None:intergenic 45.0%
ATCAATCATTTGCTCGCGAG+AGG + chr2_2:5512231-5512250 None:intergenic 45.0%
TCAAACTCTTGCCACTGTCT+TGG - chr2_2:5512259-5512278 Msa0233200:three_prime_UTR 45.0%
CAAACTCTTGCCACTGTCTT+GGG - chr2_2:5512260-5512279 Msa0233200:three_prime_UTR 45.0%
ATAGAACCTTCCCAAGACAG+TGG + chr2_2:5512273-5512292 None:intergenic 45.0%
! GTTTGTAGGCACATGGGTTT+TGG - chr2_2:5512403-5512422 Msa0233200:three_prime_UTR 45.0%
! TTGTAGGCACATGGGTTTTG+GGG - chr2_2:5512405-5512424 Msa0233200:three_prime_UTR 45.0%
!!! GGTTTTGGGGTTAGGGAATT+GGG - chr2_2:5512418-5512437 Msa0233200:intron 45.0%
!!! GTTTTGGGGTTAGGGAATTG+GGG - chr2_2:5512419-5512438 Msa0233200:intron 45.0%
!! TACGGTAGTCTCGTTTTAGG+TGG - chr2_2:5512870-5512889 Msa0233200:intron 45.0%
CATTTGGTCTACCATCCTCA+AGG + chr2_2:5512929-5512948 None:intergenic 45.0%
! ATGGTCCAAGCCTTCTAGAA+AGG - chr2_2:5512994-5513013 Msa0233200:CDS 45.0%
CCTACCAGAGACATACTACA+TGG + chr2_2:5513082-5513101 None:intergenic 45.0%
CCATGTAGTATGTCTCTGGT+AGG - chr2_2:5513079-5513098 Msa0233200:intron 45.0%
TAGTATGTCTCTGGTAGGGT+GGG - chr2_2:5513084-5513103 Msa0233200:intron 45.0%
TCTCAAACTCACGTCTAGAG+TGG + chr2_2:5513188-5513207 None:intergenic 45.0%
! TTTTGTGGGGGACTTGTATG+TGG - chr2_2:5513328-5513347 Msa0233200:intron 45.0%
AGGTGACAAGTACATCAACG+GGG - chr2_2:5513807-5513826 Msa0233200:intron 45.0%
! CTCTTTGATCCACTGCGTTT+TGG + chr2_2:5513865-5513884 None:intergenic 45.0%
GATCAAAGAGTGACGGTAGA+AGG - chr2_2:5513875-5513894 Msa0233200:intron 45.0%
! ACGGTAGAAGGTATGAGAGA+CGG - chr2_2:5513887-5513906 Msa0233200:intron 45.0%
! TAGAAGGTATGAGAGACGGA+GGG - chr2_2:5513891-5513910 Msa0233200:intron 45.0%
TGCTGGAACAGAGAATGGAA+TGG + chr2_2:5513994-5514013 None:intergenic 45.0%
TTCCATTCTCTGTTCCAGCA+TGG - chr2_2:5513994-5514013 Msa0233200:intron 45.0%
ATCCATGCTGGAACAGAGAA+TGG + chr2_2:5513999-5514018 None:intergenic 45.0%
TGTTCCAGCATGGATGTTAC+TGG - chr2_2:5514004-5514023 Msa0233200:intron 45.0%
AAGACCAGTAACATCCATGC+TGG + chr2_2:5514011-5514030 None:intergenic 45.0%
TGGAGCTTCACAGAACAGTT+GGG + chr2_2:5514141-5514160 None:intergenic 45.0%
ATGGAGCTTCACAGAACAGT+TGG + chr2_2:5514142-5514161 None:intergenic 45.0%
!! GGAGGAACGATCCTTTGTTT+TGG + chr2_2:5514274-5514293 None:intergenic 45.0%
ATCGTTCCTCCTTAATCACG+CGG - chr2_2:5514283-5514302 Msa0233200:intron 45.0%
ATAATGCCGCGTGATTAAGG+AGG + chr2_2:5514292-5514311 None:intergenic 45.0%
TATGGGTTTGAGCAGCTTCT+AGG + chr2_2:5514330-5514349 None:intergenic 45.0%
!! GGTTAGGGTTAGGGTTTTGG+GGG + chr2_2:5511997-5512016 None:intergenic 50.0%
AGGGTTTCGGGAATTGGGTT+TGG + chr2_2:5512069-5512088 None:intergenic 50.0%
CGGATAGGGTTTCGGGAATT+GGG + chr2_2:5512074-5512093 None:intergenic 50.0%
TCGGATAGGGTTTCGGGAAT+TGG + chr2_2:5512075-5512094 None:intergenic 50.0%
!!! GCACATGGGTTTTGGGGTTA+GGG - chr2_2:5512411-5512430 Msa0233200:three_prime_UTR 50.0%
!!! GGGTTTTGGGGTTAGGGAAT+TGG - chr2_2:5512417-5512436 Msa0233200:three_prime_UTR 50.0%
GTAGTATGTCTCTGGTAGGG+TGG - chr2_2:5513083-5513102 Msa0233200:intron 50.0%
GTCCTGCTTATAGGTTTGCC+TGG - chr2_2:5513637-5513656 Msa0233200:intron 50.0%
CACCAGGCAAACCTATAAGC+AGG + chr2_2:5513642-5513661 None:intergenic 50.0%
TAGGTTTGCCTGGTGTTCTC+TGG - chr2_2:5513647-5513666 Msa0233200:intron 50.0%
AGGTTTGCCTGGTGTTCTCT+GGG - chr2_2:5513648-5513667 Msa0233200:intron 50.0%
CGCAGTGGATCAAAGAGTGA+CGG - chr2_2:5513868-5513887 Msa0233200:intron 50.0%
! GTAGAAGGTATGAGAGACGG+AGG - chr2_2:5513890-5513909 Msa0233200:intron 50.0%
GCTGTCTCTTGTCTTGGCTT+TGG + chr2_2:5513940-5513959 None:intergenic 50.0%
GGAGCTTCACAGAACAGTTG+GGG + chr2_2:5514140-5514159 None:intergenic 50.0%
TTTGGGGGAGAGGGTGAAAG+AGG + chr2_2:5511982-5512001 None:intergenic 55.0%
!!! GGTTAGGGTTTTGGGGGAGA+GGG + chr2_2:5511991-5512010 None:intergenic 55.0%
CTCTTGCCACTGTCTTGGGA+AGG - chr2_2:5512264-5512283 Msa0233200:three_prime_UTR 55.0%
!!! GGCACATGGGTTTTGGGGTT+AGG - chr2_2:5512410-5512429 Msa0233200:three_prime_UTR 55.0%
GGACGCCCTACTAGGTTGTT+AGG + chr2_2:5513225-5513244 None:intergenic 55.0%
ACAAGATGGGACGCCCTACT+AGG + chr2_2:5513233-5513252 None:intergenic 55.0%
! TAGTAGGGCGTCCCATCTTG+TGG - chr2_2:5513232-5513251 Msa0233200:intron 55.0%
! AGTAGGGCGTCCCATCTTGT+GGG - chr2_2:5513233-5513252 Msa0233200:intron 55.0%
!! GGAAGTACCCAGAGAACACC+AGG + chr2_2:5513658-5513677 None:intergenic 55.0%
AGGTATGAGAGACGGAGGGA+TGG - chr2_2:5513895-5513914 Msa0233200:intron 55.0%
GAGGCAGCTGTCTCTTGTCT+TGG + chr2_2:5513946-5513965 None:intergenic 55.0%
!!! GGGTTAGGGTTTTGGGGGAG+AGG + chr2_2:5511992-5512011 None:intergenic 60.0%
! CGAGAGGGTGCAGGATCCTT+GGG + chr2_2:5512215-5512234 None:intergenic 60.0%
! ATTTGCTCGCGAGAGGGTGC+AGG + chr2_2:5512224-5512243 None:intergenic 60.0%
GTCTCTGGTAGGGTGGGCAT+TGG - chr2_2:5513090-5513109 Msa0233200:intron 60.0%
! GCGAGAGGGTGCAGGATCCT+TGG + chr2_2:5512216-5512235 None:intergenic 65.0%
TTGGACGCCCAGCAGCAGGA+GGG + chr2_2:5513921-5513940 None:intergenic 65.0%
TTTGGACGCCCAGCAGCAGG+AGG + chr2_2:5513922-5513941 None:intergenic 65.0%
AGGGATGGCCCTCCTGCTGC+TGG - chr2_2:5513910-5513929 Msa0233200:intron 70.0%
GGGATGGCCCTCCTGCTGCT+GGG - chr2_2:5513911-5513930 Msa0233200:intron 70.0%
!! GGCTTTGGACGCCCAGCAGC+AGG + chr2_2:5513925-5513944 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 5511907 5514765 5511907 ID=Msa0233200;Name=Msa0233200
chr2_2 mRNA 5511907 5514765 5511907 ID=Msa0233200-mRNA-1;Parent=Msa0233200;Name=Msa0233200-mRNA-1;_AED=0.05;_eAED=0.05;_QI=23|1|1|1|0.75|0.8|5|531|231
chr2_2 exon 5511907 5512436 5511907 ID=Msa0233200-mRNA-1:exon:2414;Parent=Msa0233200-mRNA-1
chr2_2 exon 5512687 5512863 5512687 ID=Msa0233200-mRNA-1:exon:2413;Parent=Msa0233200-mRNA-1
chr2_2 exon 5512957 5513022 5512957 ID=Msa0233200-mRNA-1:exon:2412;Parent=Msa0233200-mRNA-1
chr2_2 exon 5513117 5513214 5513117 ID=Msa0233200-mRNA-1:exon:2411;Parent=Msa0233200-mRNA-1
chr2_2 exon 5514387 5514765 5514387 ID=Msa0233200-mRNA-1:exon:2410;Parent=Msa0233200-mRNA-1
chr2_2 five_prime_UTR 5514743 5514765 5514743 ID=Msa0233200-mRNA-1:five_prime_utr;Parent=Msa0233200-mRNA-1
chr2_2 CDS 5514387 5514742 5514387 ID=Msa0233200-mRNA-1:cds;Parent=Msa0233200-mRNA-1
chr2_2 CDS 5513117 5513214 5513117 ID=Msa0233200-mRNA-1:cds;Parent=Msa0233200-mRNA-1
chr2_2 CDS 5512957 5513022 5512957 ID=Msa0233200-mRNA-1:cds;Parent=Msa0233200-mRNA-1
chr2_2 CDS 5512688 5512863 5512688 ID=Msa0233200-mRNA-1:cds;Parent=Msa0233200-mRNA-1
chr2_2 three_prime_UTR 5512687 5512687 5512687 ID=Msa0233200-mRNA-1:three_prime_utr;Parent=Msa0233200-mRNA-1
chr2_2 three_prime_UTR 5511907 5512436 5511907 ID=Msa0233200-mRNA-1:three_prime_utr;Parent=Msa0233200-mRNA-1
Gene Sequence

>Msa0233200

ATGGCATTGTTACAAACTTGTCTTCCATCTCTCAAAATGGCTACAATTTCCTCTTTCACCCTCTCCCCCAAAACCCTAACCCTAACCTATCATCCCAAAACCCCAAGTTTCAACTTCAATCCTCTCTCTATCAAATCCAAACCCAATTCCCGAAACCCTATCCGAATTCAAGCAGTATTGGATGAAGATTACTCTTCAAAAAGAAGCAGTAGCAATGAACAGAGAGAGACAATTATGCTACCTGGTTGTGATTACAATCATTGGCTTATTGTAATGGAGTTTCCCAAGGATCCTGCACCCTCTCGCGAGCAAATGATTGATACTTATCTTCAAACTCTTGCCACTGTCTTGGGAAGCATGGAAGAAGCTAAGAAGAACATGTATGCCTTTAGCACCACAACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCTGAGAAATTCAAGGGTTTGCCTGGTGTTCTCTGGGTACTTCCAGACTCATACATAGATGTTAAAAATAAAGACTACGGAGGTGACAAGTACATCAACGGGGAGATAATTCCTTGCAAGTACCCTACTTATCAACCAAAACGCAGTGGATCAAAGAGTGACGGTAGAAGGTATGAGAGACGGAGGGATGGCCCTCCTGCTGCTGGGCGTCCAAAGCCAAGACAAGAGACAGCTGCCTCAGATTCATCCTCTACATGA

Protein sequence

>Msa0233200

MALLQTCLPSLKMATISSFTLSPKTLTLTYHPKTPSFNFNPLSIKSKPNSRNPIRIQAVLDEDYSSKRSSSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSREQMIDTYLQTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKRSGSKSDGRRYERRRDGPPAAGRPKPRQETAASDSSST*