AlfalfaGEDB | Msa1076460

M. sativa cultivar zhongmu-4 / Msa1076460

KEGG: -
GO: -
PFAM: PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1076460	TKY73841.1	58.898	236	97	0	33	268	25	260	1.68e-98	299

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1076460	sp\|I1M2U5\|NAMT1_SOYBN	51.867	241	113	2	31	271	9	246	6.50e-85	261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1076460	G7JBI7	59.471	227	92	0	33	259	13	239	1.02e-96	294

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0201330	Msa1076460	0.818736	1.677491e-52	-8.615850e-47
Msa0243910	Msa1076460	0.815631	8.371881e-52	-8.615850e-47
Msa0369360	Msa1076460	0.809911	1.497328e-50	-8.615850e-47
Msa0719490	Msa1076460	-0.804057	2.592902e-49	-8.615850e-47
Msa0875150	Msa1076460	0.812533	4.042453e-51	-8.615850e-47
Msa0968320	Msa1076460	-0.803876	2.828270e-49	-8.615850e-47
Msa1076450	Msa1076460	0.862181	6.077008e-64	-8.615850e-47
Msa1076460	Msa1076470	0.876813	1.035552e-68	-8.615850e-47
Msa1076460	Msa1076480	0.935419	8.739563e-97	-8.615850e-47
Msa1076460	Msa1083410	0.816105	6.564742e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1076460	MtrunA17_Chr3g0130061	60.352	227	90	0	33	259	13	239	2.01e-100	297
Msa1076460	MtrunA17_Chr3g0130011	59.471	227	92	0	33	259	13	239	4.14e-99	294
Msa1076460	MtrunA17_Chr2g0314271	51.931	233	111	1	34	266	11	242	8.35e-87	263
Msa1076460	MtrunA17_Chr7g0218181	34.310	239	126	7	37	259	26	249	8.77e-32	120
Msa1076460	MtrunA17_Chr3g0128011	34.599	237	147	5	28	259	66	299	9.48e-32	121
Msa1076460	MtrunA17_Chr8g0367451	31.224	237	153	4	40	270	35	267	3.02e-30	116
Msa1076460	MtrunA17_Chr7g0218131	33.772	228	145	3	37	259	26	252	1.02e-29	115
Msa1076460	MtrunA17_Chr7g0276411	30.531	226	149	3	40	259	21	244	2.00e-29	114
Msa1076460	MtrunA17_Chr7g0218211	32.895	228	147	3	37	259	25	251	2.30e-29	114
Msa1076460	MtrunA17_Chr8g0367441	30.531	226	149	3	40	259	36	259	1.48e-28	112

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1076460	AT3G53140.1	48.319	238	119	1	33	266	10	247	2.30e-78	241
Msa1076460	AT5G54160.1	36.797	231	136	7	34	259	18	243	4.51e-34	127
Msa1076460	AT1G51990.1	35.673	171	105	2	93	259	74	243	6.58e-29	113
Msa1076460	AT1G51990.2	35.088	171	106	2	93	259	74	243	1.29e-27	109
Msa1076460	AT1G77520.1	29.130	230	150	5	41	259	35	262	2.87e-22	95.1
Msa1076460	AT1G33030.2	30.531	226	147	5	40	259	11	232	7.49e-19	84.0
Msa1076460	AT1G33030.3	31.330	233	136	7	40	259	11	232	1.25e-18	83.6
Msa1076460	AT1G33030.1	30.531	226	147	5	40	259	11	232	1.59e-18	84.3
Msa1076460	AT1G21120.1	32.900	231	144	6	37	259	27	254	2.34e-15	75.5
Msa1076460	AT1G21130.2	32.900	231	144	6	37	259	27	254	2.83e-15	74.7

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Find 99 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGGTAGTGTTGTTA+TGG	0.339148	7_2:-74979621	Msa1076460:three_prime_UTR
AAAATCTCGGAAGCCGACAT+AGG	0.549653	7_2:+74980519	None:intergenic
AAACTAGTATACCTGGGAGT+TGG	0.430030	7_2:+74979849	None:intergenic
AAAGTGATATTTGATGGAAA+TGG	0.469146	7_2:-74980941	Msa1076460:five_prime_UTR
AAAGTTCTCACTTGCAGAGG+TGG	0.525549	7_2:-74980385	Msa1076460:CDS
AAATTCCCAAACATTAGCAA+GGG	0.640329	7_2:-74979911	Msa1076460:CDS
AACCATTCCGAAAGGTGAAC+GGG	0.369706	7_2:-74980117	Msa1076460:CDS
AACGAACATGTGTAAGTCCT+AGG	0.537844	7_2:+74979459	None:intergenic
AACGGCTTACGATATCTTTG+AGG	0.480985	7_2:-74980433	Msa1076460:CDS
AACTAGTATACCTGGGAGTT+GGG	0.411741	7_2:+74979850	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCACATGCAATAATTGTAG+TGG	+	chr7_2:74979531-74979550	None:intergenic	30.0%
AATTATTGCATGTGATTCCT+CGG	-	chr7_2:74979535-74979554	Msa1076460:three_prime_UTR	30.0%
AGTTGCTATACTCAGTAATA+AGG	+	chr7_2:74979627-74979646	None:intergenic	30.0%
ATTTGAAAATGAGCAAAGCA+AGG	-	chr7_2:74979774-74979793	Msa1076460:three_prime_UTR	30.0%
CCTTTGTTGAAAATGGTATT+CGG	+	chr7_2:74979872-74979891	None:intergenic	30.0%
ACAACTGATAATAACTAACC+TGG	+	chr7_2:74980123-74980142	None:intergenic	30.0%
TAAATTCCCAAACATTAGCA+AGG	-	chr7_2:74980509-74980528	Msa1076460:CDS	30.0%
AAATTCCCAAACATTAGCAA+GGG	-	chr7_2:74980510-74980529	Msa1076460:CDS	30.0%
ATCACATGCAATAATTGTAG+TGG	+	chr7_2:74979531-74979550	None:intergenic	30.0%
AATTATTGCATGTGATTCCT+CGG	-	chr7_2:74979535-74979554	Msa1076460:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	74979426	74981017	74979426	ID=Msa1076460;Name=Msa1076460
chr7_2	mRNA	74979426	74981017	74979426	ID=Msa1076460-mRNA-1;Parent=Msa1076460;Name=Msa1076460-mRNA-1;_AED=0.40;_eAED=0.40;_QI=263\|1\|1\|1\|1\|1\|2\|382\|274
chr7_2	exon	74979426	74980197	74979426	ID=Msa1076460-mRNA-1:exon:17795;Parent=Msa1076460-mRNA-1
chr7_2	exon	74980320	74981017	74980320	ID=Msa1076460-mRNA-1:exon:17794;Parent=Msa1076460-mRNA-1
chr7_2	five_prime_UTR	74980755	74981017	74980755	ID=Msa1076460-mRNA-1:five_prime_utr;Parent=Msa1076460-mRNA-1
chr7_2	CDS	74980320	74980754	74980320	ID=Msa1076460-mRNA-1:cds;Parent=Msa1076460-mRNA-1
chr7_2	CDS	74979808	74980197	74979808	ID=Msa1076460-mRNA-1:cds;Parent=Msa1076460-mRNA-1
chr7_2	three_prime_UTR	74979426	74979807	74979426	ID=Msa1076460-mRNA-1:three_prime_utr;Parent=Msa1076460-mRNA-1

Gene Sequence

>Msa1076460

ATGCTAAGTCCCCTTATTACTCAAGAAAGGCTGGTCTTACATCCATACAAGTTTTCGTTATTCTTCTACTTTCAACTTCTAACATATTTGAAAATGAGCAAAGCAAGGTTAGCAATAATGAATTTATCCCATCTAATGAGTGTCCCTTCTTCTCTAGTTGCCGTAATTGAACTAGATGTTCCGAATACCATTTTCAACAAAGGAAGCAACCTTCCTATGTCGGCTTCCGAGATTTTGGCAATTGTTCGCCCAAACGGGGGAGGGGAAGCAGATAACCTGGAACGTATGCTCAGGTTGTTAACGGCTTACGATATCTTTGAGGAGCACTTGATGAGTAATGGAGTTAGAAAGTTCTCACTTGCAGAGGTGGGTAAATCTCTTGCTGAAGATGAAGACGGTCTCTCTTATGCCCCTTACATGCTTCAACACCACCAGCATGCGTATATGAGGGCCTGGCCTCTCCTTAAGGACGTGGTTGAGGACCCATCCACAGAACCATTCCGAAAGGTGAACGGGGAACCAGCACATGACTTTTACGTAAAATATCGAGAACAAATGAAGTTGTTTAACAAAGCTTTTATTGGAATGACCATTCCATTTTTTAGAGAAGTTTTGGAATCATACGATGGGTTTCGTGGTGTGGAAGCTTTAGTGGATGTCGGAGGCAATACGGGCATTTCTTTGCAGATTATAATGGCTAAATTCCCAAACATTAGCAAGGGAATCAACTTTGATCTCCCCGAAATTGCTGCAAGTGCATCCCAACTCCCAGGTATACTAGTTTTAAAGTACGATGTAGATATTTTTAGATTGGCAACTTTGTAG

Protein sequence

>Msa1076460

MLSPLITQERLVLHPYKFSLFFYFQLLTYLKMSKARLAIMNLSHLMSVPSSLVAVIELDVPNTIFNKGSNLPMSASEILAIVRPNGGGEADNLERMLRLLTAYDIFEEHLMSNGVRKFSLAEVGKSLAEDEDGLSYAPYMLQHHQHAYMRAWPLLKDVVEDPSTEPFRKVNGEPAHDFYVKYREQMKLFNKAFIGMTIPFFREVLESYDGFRGVEALVDVGGNTGISLQIIMAKFPNISKGINFDLPEIAASASQLPGILVLKYDVDIFRLATL*