AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1078250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078250 MtrunA17_Chr7g0262891 92.574 404 29 1 37 440 1 403 0.0 746
Msa1078250 MtrunA17_Chr7g0262901 80.499 441 83 3 1 440 413 851 0.0 714
Msa1078250 MtrunA17_Chr7g0262911 47.255 419 180 12 1 412 409 793 1.33e-110 344
Msa1078250 MtrunA17_Chr5g0397041 40.786 407 198 14 1 404 411 777 1.06e-77 257
Msa1078250 MtrunA17_Chr4g0069671 41.205 415 201 15 2 407 409 789 2.63e-77 256
Msa1078250 MtrunA17_Chr4g0039911 39.048 420 200 15 2 405 409 788 4.93e-75 250
Msa1078250 MtrunA17_Chr5g0397061 39.558 407 203 12 1 404 280 646 6.62e-75 246
Msa1078250 MtrunA17_Chr8g0384341 37.019 416 231 12 1 412 411 799 1.06e-71 241
Msa1078250 MtrunA17_Chr5g0397051 38.821 407 208 13 1 404 411 779 3.68e-70 237
Msa1078250 MtrunA17_Chr2g0280951 35.135 407 225 10 1 404 417 787 2.89e-65 224
Msa1078250 MtrunA17_Chr3g0130301 36.715 414 216 16 1 404 413 790 3.38e-64 221
Msa1078250 MtrunA17_Chr1g0167801 32.452 416 241 11 1 406 344 729 2.20e-48 176
Msa1078250 MtrunA17_Chr6g0470261 30.189 424 220 15 1 408 394 757 2.10e-47 173
Msa1078250 MtrunA17_Chr1g0168791 31.713 432 251 12 1 422 344 741 1.01e-46 171
Msa1078250 MtrunA17_Chr3g0091591 29.803 406 244 11 6 404 339 710 1.41e-46 171
Msa1078250 MtrunA17_Chr4g0019401 30.583 412 237 14 2 404 13 384 2.21e-46 165
Msa1078250 MtrunA17_Chr3g0091581 30.095 422 225 11 5 404 414 787 8.55e-46 169
Msa1078250 MtrunA17_Chr3g0106471 33.173 416 200 18 1 404 430 779 1.31e-45 169
Msa1078250 MtrunA17_Chr3g0089271 31.084 415 225 18 1 404 401 765 2.23e-45 168
Msa1078250 MtrunA17_Chr5g0432131 32.280 443 235 18 3 427 311 706 1.78e-44 165
Msa1078250 MtrunA17_Chr2g0299741 30.769 429 227 17 1 404 427 810 2.47e-44 165
Msa1078250 MtrunA17_Chr5g0432141 31.863 408 221 18 3 404 426 782 4.86e-43 161
Msa1078250 MtrunA17_Chr3g0106451 30.414 411 224 17 1 404 1 356 3.12e-41 150
Msa1078250 MtrunA17_Chr3g0114261 29.340 409 229 13 1 404 413 766 3.44e-41 156
Msa1078250 MtrunA17_Chr5g0432121 30.594 438 241 16 6 431 348 734 8.39e-41 154
Msa1078250 MtrunA17_Chr5g0428341 28.501 407 250 10 5 404 325 697 6.53e-40 152
Msa1078250 MtrunA17_Chr5g0432151 30.370 405 232 13 2 404 422 778 1.02e-39 152
Msa1078250 MtrunA17_Chr8g0350601 28.395 405 251 10 6 404 326 697 6.13e-39 149
Msa1078250 MtrunA17_Chr3g0140801 30.163 368 221 13 48 404 433 775 7.53e-38 146
Msa1078250 MtrunA17_Chr4g0013341 30.435 368 222 15 48 404 434 778 1.16e-37 145
Msa1078250 MtrunA17_Chr6g0455471 27.901 405 207 12 16 404 451 786 4.05e-35 138
Msa1078250 MtrunA17_Chr8g0378261 25.926 405 216 11 16 404 454 790 3.47e-31 126
Msa1078250 MtrunA17_Chr5g0441291 29.000 400 208 14 19 404 479 816 7.04e-31 125
Msa1078250 MtrunA17_Chr3g0114181 27.427 412 238 15 8 402 432 799 5.18e-30 123
Msa1078250 MtrunA17_Chr3g0131701 27.949 390 221 11 15 399 454 788 9.89e-30 122
Msa1078250 MtrunA17_Chr3g0114191 27.924 419 246 14 1 402 464 843 1.18e-29 122
Msa1078250 MtrunA17_Chr7g0234431 28.680 394 223 14 16 404 418 758 8.12e-29 119
Msa1078250 MtrunA17_Chr5g0441281 28.608 395 222 13 16 404 461 801 1.78e-28 118
Msa1078250 MtrunA17_Chr7g0234531 28.645 391 227 12 16 404 268 608 3.90e-28 117
Msa1078250 MtrunA17_Chr5g0437801 27.606 355 189 11 66 406 1 301 5.19e-28 113
Msa1078250 MtrunA17_Chr7g0253481 25.926 405 243 13 15 403 7 370 8.77e-28 114
Msa1078250 MtrunA17_Chr7g0234551 28.645 391 227 12 16 404 461 801 9.41e-28 116
Msa1078250 MtrunA17_Chr7g0234521 28.645 391 227 12 16 404 461 801 9.95e-28 116
Msa1078250 MtrunA17_Chr3g0106371 27.924 419 220 20 1 404 565 916 1.93e-27 115
Msa1078250 MtrunA17_Chr5g0441041 26.650 394 234 13 16 404 446 789 1.16e-24 107
Msa1078250 MtrunA17_Chr5g0441061 25.255 392 242 12 16 404 446 789 4.39e-23 102
Msa1078250 MtrunA17_Chr5g0441051 25.686 401 232 15 16 404 446 792 8.65e-23 101
Msa1078250 MtrunA17_Chr3g0121481 26.209 393 228 13 19 404 346 683 6.26e-21 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1078250 AT3G53720.2 55.288 416 173 8 1 411 342 749 1.17e-153 454
Msa1078250 AT3G53720.1 55.288 416 173 8 1 411 415 822 8.96e-153 454
Msa1078250 AT5G41610.2 40.777 412 207 14 1 407 341 720 1.27e-80 264
Msa1078250 AT5G41610.1 40.777 412 207 14 1 407 409 788 4.89e-80 264
Msa1078250 AT5G41610.3 40.777 412 207 14 1 407 409 788 4.89e-80 264
Msa1078250 AT3G17630.1 41.422 408 192 12 1 405 410 773 5.05e-77 255
Msa1078250 AT3G17630.2 41.422 408 192 12 1 405 410 773 5.05e-77 255
Msa1078250 AT4G23700.2 37.621 412 225 12 1 404 408 795 4.67e-75 251
Msa1078250 AT4G23700.1 37.621 412 225 12 1 404 408 795 4.67e-75 251
Msa1078250 AT2G13620.1 35.797 433 237 14 1 424 413 813 1.29e-71 241
Msa1078250 AT1G64170.1 37.441 422 199 15 1 404 418 792 8.35e-71 239
Msa1078250 AT1G05580.2 33.413 416 227 11 1 407 317 691 9.63e-53 189
Msa1078250 AT1G05580.1 33.413 416 227 11 1 407 428 802 3.27e-52 188
Msa1078250 AT5G22900.1 29.584 409 229 11 11 408 462 822 1.29e-43 163
Msa1078250 AT2G31910.3 30.843 415 235 13 1 404 317 690 1.70e-43 162
Msa1078250 AT2G31910.2 30.843 415 235 13 1 404 317 690 1.70e-43 162
Msa1078250 AT2G31910.1 31.084 415 234 13 1 404 414 787 5.04e-43 162
Msa1078250 AT1G06970.1 27.764 407 226 10 11 405 436 786 8.82e-40 152
Msa1078250 AT2G28180.1 29.854 412 231 12 1 404 448 809 7.66e-38 147
Msa1078250 AT1G79400.1 30.208 384 217 15 38 404 424 773 1.29e-36 143
Msa1078250 AT3G44900.1 29.782 413 227 14 3 404 453 813 3.25e-36 142
Msa1078250 AT2G30240.1 27.561 410 237 12 1 404 431 786 4.06e-35 139
Msa1078250 AT3G52080.1 30.118 425 233 13 1 404 404 785 6.26e-35 138
Msa1078250 AT1G16380.1 28.271 428 236 15 13 404 383 775 1.42e-34 137
Msa1078250 AT3G44910.1 27.750 400 206 15 1 388 424 752 2.09e-30 124
Msa1078250 AT1G08150.1 26.667 390 238 11 1 388 451 794 2.46e-29 121
Msa1078250 AT2G28170.1 26.650 409 241 14 3 404 443 799 4.83e-28 117
Msa1078250 AT3G44920.1 26.456 412 233 12 1 400 423 776 1.12e-27 116
Msa1078250 AT3G44930.1 26.329 395 231 12 1 388 423 764 1.21e-27 116
Msa1078250 AT1G08135.1 27.248 367 219 12 40 405 477 796 6.20e-27 114
Msa1078250 AT1G08140.1 26.619 417 219 16 11 404 452 804 3.04e-26 112
Msa1078250 AT5G01690.1 26.997 363 199 11 50 403 462 767 6.09e-26 111
Msa1078250 AT5G58460.1 25.527 427 249 15 1 404 448 828 4.79e-25 108
Msa1078250 AT5G22910.1 26.764 411 214 14 1 388 435 781 4.88e-25 108
Msa1078250 AT5G37060.1 27.146 431 240 15 1 404 447 830 9.43e-25 107
Msa1078250 AT5G01680.1 27.005 374 210 12 50 411 461 783 2.74e-20 94.4

Find 133 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCTTGGGTCGAAGAATT+TGG 0.177714 7_2:-77123836 Msa1078250:CDS
TATAACTTTGGTCGGTATTT+TGG 0.197869 7_2:+77123632 None:intergenic
AAAACACAATGCATATTCTT+TGG 0.224822 7_2:+77123794 None:intergenic
ATTTGCAATCATGGTACTTA+TGG 0.235524 7_2:-77124511 Msa1078250:exon
TTTATAGCCTTCTTATACTT+TGG 0.237302 7_2:+77122468 None:intergenic
GGGTCGGTTTCCGTCGATTA+TGG 0.262230 7_2:-77122771 Msa1078250:CDS
GTAAGGTTCGTTATGCAAAA+TGG 0.274338 7_2:-77123694 Msa1078250:CDS
GGCCTTGGGTCGAAGAATTT+GGG 0.319048 7_2:-77123835 Msa1078250:CDS
GTGGAGGAGGTGATAACATT+AGG 0.326606 7_2:-77122830 Msa1078250:CDS
ATTTATTCATTCTCTTGAAA+TGG 0.342872 7_2:-77124692 Msa1078250:five_prime_UTR
TGGAGGAGGTGATAACATTA+GGG 0.347823 7_2:-77122829 Msa1078250:CDS
TCGAAGAATTTGGGCTTAGA+TGG 0.351131 7_2:-77123826 Msa1078250:CDS
GTGGATAGAGGGTATGGCCT+TGG 0.354346 7_2:-77123850 Msa1078250:CDS
AAACACAATGCATATTCTTT+GGG 0.364907 7_2:+77123795 None:intergenic
TCTAGAGTTGGGAAAGAAAA+TGG 0.365515 7_2:-77123746 Msa1078250:CDS
AAGTCTTGATTTGCATATAC+AGG 0.372759 7_2:+77124728 None:intergenic
TCATCTGACCTCTAGCCAAT+TGG 0.378132 7_2:-77124121 Msa1078250:CDS
CTTCCAGCCGCCAATGTTTG+TGG 0.395185 7_2:+77123989 None:intergenic
CATCTGACCTCTAGCCAATT+GGG 0.413601 7_2:-77124120 Msa1078250:CDS
AGAGCTGAACATGCAGAGTT+AGG 0.414940 7_2:-77122728 Msa1078250:CDS
TCTAGAGCCTCGCGATCGTC+AGG 0.421711 7_2:+77123763 None:intergenic
GGATGTTAAAATGTCTCCTA+TGG 0.422501 7_2:+77122703 None:intergenic
AGTGGATAGGTGTGAACAAA+AGG 0.426668 7_2:-77123909 Msa1078250:CDS
TGGATAGAGGGTATGGCCTT+GGG 0.427895 7_2:-77123849 Msa1078250:CDS
TGACGAAATATTTGCAATCA+TGG 0.428782 7_2:-77124520 Msa1078250:exon
GCCTAGCTTGCGAATTGTCT+TGG 0.430427 7_2:+77124419 None:intergenic
TAAGGTTCGTTATGCAAAAT+GGG 0.433000 7_2:-77123693 Msa1078250:CDS
GGACTATAACCTTACCCAAT+TGG 0.435071 7_2:+77124106 None:intergenic
ATTGCAGGAGTTGGATGAAA+AGG 0.435105 7_2:-77122921 Msa1078250:intron
GAATGGCATAACCGTATTGT+TGG 0.437995 7_2:-77124150 Msa1078250:CDS
GATTATGATCTCATAGTTGT+TGG 0.440225 7_2:-77122797 Msa1078250:CDS
AATGTTGCAGAGGTTTCATC+TGG 0.442709 7_2:-77122578 Msa1078250:CDS
CTGTTGCAGTGACCGTTGTA+AGG 0.444376 7_2:-77123711 Msa1078250:CDS
GCCATTCTTCACGATTGAAC+CGG 0.446177 7_2:+77124166 None:intergenic
TCAATGAGGTTGATGATAGA+TGG 0.446239 7_2:+77124315 None:intergenic
CGACTGAGAAGCTATAACTT+TGG 0.446493 7_2:+77123620 None:intergenic
GTGCTTGTGGATAGAGGGTA+TGG 0.447224 7_2:-77123856 Msa1078250:CDS
CGAATCCTTGCTTGCATCCA+CGG 0.447450 7_2:-77124351 Msa1078250:CDS
GATCGCGAGGCTCTAGAGTT+GGG 0.448022 7_2:-77123757 Msa1078250:CDS
TAACGACAAAGTCAAATAAG+AGG 0.448923 7_2:+77124613 None:intergenic
GTGGGTGTGCTTGTGGATAG+AGG 0.452134 7_2:-77123862 Msa1078250:CDS
AAAGAAAATGGCTGAACATC+CGG 0.454095 7_2:-77123734 Msa1078250:CDS
CGATTGAACCGGTTGAAGAA+AGG 0.456626 7_2:+77124177 None:intergenic
TTGCTCTGTGGGTGTGCTTG+TGG 0.463322 7_2:-77123869 Msa1078250:CDS
AAGATATCGCCGTAGTGGAC+TGG 0.471278 7_2:+77124085 None:intergenic
ATTATGATCTCATAGTTGTT+GGG 0.473822 7_2:-77122796 Msa1078250:CDS
AATGGCATAACCGTATTGTT+GGG 0.475293 7_2:-77124149 Msa1078250:CDS
TTGTAGATTGCCATTACTAG+TGG 0.481587 7_2:+77124462 None:intergenic
ACAAGCACACCCACAGAGCA+AGG 0.488232 7_2:+77123871 None:intergenic
CTATTGTCACATATAGATCA+TGG 0.493689 7_2:-77122505 Msa1078250:three_prime_UTR
CATGCAGTGTCGGAGAATGC+TGG 0.494770 7_2:-77123937 Msa1078250:CDS
TACTAGTGGGGTTGTGATGA+AGG 0.500111 7_2:+77124476 None:intergenic
TGTAGATTGCCATTACTAGT+GGG 0.500399 7_2:+77124463 None:intergenic
GCTGCATGATGAAGAGTTTG+AGG 0.503536 7_2:+77124265 None:intergenic
GACCATCTTGCTTCCTGTTG+AGG 0.504129 7_2:+77122682 None:intergenic
ATAACCACCTCAGGATGTAC+TGG 0.504879 7_2:+77124661 None:intergenic
CATCACAACCCCACTAGTAA+TGG 0.506614 7_2:-77124472 Msa1078250:CDS
TTGGTTGTGATGCCACGAGC+TGG 0.507153 7_2:+77124438 None:intergenic
AATGAACAGACAAATAGAAC+AGG 0.510887 7_2:-77123593 Msa1078250:intron
GACCTCTAGCCAATTGGGTA+AGG 0.512856 7_2:-77124115 Msa1078250:CDS
GTTGATGATAGATGGAATGT+TGG 0.513785 7_2:+77124323 None:intergenic
CGATCGCGAGGCTCTAGAGT+TGG 0.514013 7_2:-77123758 Msa1078250:CDS
GAAAATGTCATAACCACCTC+AGG 0.514564 7_2:+77124652 None:intergenic
TACCCTTCCACAAACATTGG+CGG 0.517678 7_2:-77123996 Msa1078250:CDS
ACGTTCATCTTCCATCATCA+TGG 0.521585 7_2:-77124226 Msa1078250:CDS
ACCGGTTCAATCGTGAAGAA+TGG 0.523081 7_2:-77124167 Msa1078250:CDS
TGGTGGCAACATTGTGGAGG+AGG 0.531388 7_2:-77122843 Msa1078250:CDS
CAGCCGCCAATGTTTGTGGA+AGG 0.534361 7_2:+77123993 None:intergenic
ACAGTGAAGTATATTGAGAA+GGG 0.536313 7_2:-77122866 Msa1078250:CDS
TACAACTCCAAAGTATAAGA+AGG 0.537770 7_2:-77122475 Msa1078250:three_prime_UTR
AACAGTGAAGTATATTGAGA+AGG 0.538998 7_2:-77122867 Msa1078250:CDS
CAGCATTCTCCGACACTGCA+TGG 0.539157 7_2:+77123938 None:intergenic
AAGAATGCTCCTTGCTCTGT+GGG 0.541846 7_2:-77123880 Msa1078250:CDS
GATGAAAAGCCCCAACAATA+CGG 0.545639 7_2:+77124139 None:intergenic
AACGACAAAGTCAAATAAGA+GGG 0.547481 7_2:+77124614 None:intergenic
TTGAACCGTGGATGCAAGCA+AGG 0.551323 7_2:+77124346 None:intergenic
TGATCTCATAGTTGTTGGGA+AGG 0.552228 7_2:-77122792 Msa1078250:CDS
GTTGGATGAAAAGGCAATGG+AGG 0.552444 7_2:-77122912 Msa1078250:CDS
AGCGCGATGAACCATGATGA+TGG 0.557522 7_2:+77124215 None:intergenic
AAGTATATTGAGAAGGGTGG+TGG 0.558637 7_2:-77122860 Msa1078250:CDS
TGGGTGTGCTTGTGGATAGA+GGG 0.559960 7_2:-77123861 Msa1078250:CDS
TATTACCCTTCCACAAACAT+TGG 0.562447 7_2:-77123999 Msa1078250:CDS
TCATAGTTGTTGGGAAGGGT+CGG 0.562457 7_2:-77122787 Msa1078250:CDS
ACCAAGACAATTCGCAAGCT+AGG 0.566811 7_2:-77124420 Msa1078250:CDS
GATGTTAAAATGTCTCCTAT+GGG 0.567000 7_2:+77122704 None:intergenic
ACAACGGTCACTGCAACAGC+CGG 0.568380 7_2:+77123715 None:intergenic
CTTCCACAAACATTGGCGGC+TGG 0.568610 7_2:-77123992 Msa1078250:CDS
GTAGATTGCCATTACTAGTG+GGG 0.570753 7_2:+77124464 None:intergenic
AAGGATTCGTAGCTCATCTA+CGG 0.572758 7_2:+77124365 None:intergenic
TTCTCTTTCCACAATGCATG+AGG 0.573921 7_2:-77124064 Msa1078250:CDS
CATGCAGAGTTAGGTCCCAT+AGG 0.574828 7_2:-77122719 Msa1078250:CDS
AGCCGCCAATGTTTGTGGAA+GGG 0.575299 7_2:+77123994 None:intergenic
GTTATGCAAAATGGGATGAT+CGG 0.575404 7_2:-77123685 Msa1078250:CDS
AGCCCAAATTCTTCGACCCA+AGG 0.579740 7_2:+77123833 None:intergenic
GTGAAGTATATTGAGAAGGG+TGG 0.580487 7_2:-77122863 Msa1078250:CDS
GGAGTTGGATGAAAAGGCAA+TGG 0.581954 7_2:-77122915 Msa1078250:CDS
CATGCAGCTTGTTGAGCTCA+CGG 0.583649 7_2:-77124250 Msa1078250:CDS
GATGTGATTTCATTATAGAG+AGG 0.597481 7_2:+77122418 None:intergenic
GTGGATAGGTGTGAACAAAA+GGG 0.600503 7_2:-77123908 Msa1078250:CDS
TGGTGGACCTGACGATCGCG+AGG 0.602058 7_2:-77123770 Msa1078250:CDS
ATGGCATAACCGTATTGTTG+GGG 0.602645 7_2:-77124148 Msa1078250:CDS
TATTGTCACATATAGATCAT+GGG 0.605182 7_2:-77122504 Msa1078250:three_prime_UTR
GCATGATGAAGAGTTTGAGG+AGG 0.606679 7_2:+77124268 None:intergenic
TGAGAAGCTATAACTTTGGT+CGG 0.613013 7_2:+77123624 None:intergenic
ATCCTCAACAGGAAGCAAGA+TGG 0.613824 7_2:-77122684 Msa1078250:CDS
AAGAGAAGATATCGCCGTAG+TGG 0.616619 7_2:+77124080 None:intergenic
TCGGTTTCCGTCGATTATGG+TGG 0.617439 7_2:-77122768 Msa1078250:CDS
GAAGGGTGGTGGCAACATTG+TGG 0.620112 7_2:-77122849 Msa1078250:CDS
GGTTATAGTCCAGTCCACTA+CGG 0.621273 7_2:-77124094 Msa1078250:CDS
TGCACCTTGACCGTGTACAT+CGG 0.621452 7_2:+77122608 None:intergenic
CAATGAGTTCCATGCAGTGT+CGG 0.622507 7_2:-77123947 Msa1078250:CDS
AACCTTACCCAATTGGCTAG+AGG 0.625874 7_2:+77124113 None:intergenic
AAAGAATGCTCCTTGCTCTG+TGG 0.627753 7_2:-77123881 Msa1078250:CDS
GATCTCATAGTTGTTGGGAA+GGG 0.628242 7_2:-77122791 Msa1078250:CDS
CGGAGAATGCTGGAAATGAG+TGG 0.631644 7_2:-77123927 Msa1078250:CDS
GGGTGGTGGCAACATTGTGG+AGG 0.632253 7_2:-77122846 Msa1078250:CDS
GGAGGAGGTGATAACATTAG+GGG 0.634008 7_2:-77122828 Msa1078250:CDS
GCATATATCCTCATGCATTG+TGG 0.634054 7_2:+77124056 None:intergenic
GCAATCTACAAACCAGCTCG+TGG 0.634509 7_2:-77124450 Msa1078250:CDS
CATGATGAAGAGTTTGAGGA+GGG 0.638126 7_2:+77124269 None:intergenic
AGTTCTGCCACCATAATCGA+CGG 0.645279 7_2:+77122761 None:intergenic
AATGCTGGAAATGAGTGGAT+AGG 0.649241 7_2:-77123922 Msa1078250:CDS
AGAAGATGCACCGATGTACA+CGG 0.653659 7_2:-77122618 Msa1078250:CDS
TTGCATAACGAACCTTACAA+CGG 0.662617 7_2:+77123699 None:intergenic
TAGTGGGGTTGTGATGAAGG+TGG 0.664951 7_2:+77124479 None:intergenic
TGCTACGAGTTGATTCAATG+AGG 0.672348 7_2:+77124301 None:intergenic
GAGGAGTTTCAAAGCAAGTG+TGG 0.680710 7_2:-77122893 Msa1078250:CDS
ACGACAAAGTCAAATAAGAG+GGG 0.685074 7_2:+77124615 None:intergenic
TGTTCCAGTACATCCTGAGG+TGG 0.687146 7_2:-77124665 Msa1078250:five_prime_UTR
GCATGATGAGAATGTTGCAG+AGG 0.695544 7_2:-77122588 Msa1078250:CDS
ACATGTTCCAGTACATCCTG+AGG 0.698706 7_2:-77124668 Msa1078250:five_prime_UTR
ATGGAATGTTGGTTGAACCG+TGG 0.725204 7_2:+77124334 None:intergenic
TGGTGGCAGAACTAGCAGAG+AGG 0.738029 7_2:-77122751 Msa1078250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAACTAAATTTAATTAC+AGG - chr7_2:77122607-77122626 Msa1078250:CDS 10.0%
!!! TTTTAACTAAATTTAATTAC+AGG - chr7_2:77122607-77122626 Msa1078250:CDS 10.0%
!! TATTTAACACTAAATCTATT+TGG + chr7_2:77123597-77123616 None:intergenic 15.0%
!! TATTTAACACTAAATCTATT+TGG + chr7_2:77123597-77123616 None:intergenic 15.0%
!! ATTTATTCATTCTCTTGAAA+TGG - chr7_2:77122465-77122484 Msa1078250:three_prime_UTR 20.0%
!!! ATTTTTGTCTTTAGAGTTTA+AGG + chr7_2:77122771-77122790 None:intergenic 20.0%
!! TTTATTGAGTGAAATTAATG+TGG - chr7_2:77123810-77123829 Msa1078250:CDS 20.0%
!!! TAAAAATCTCTGAAAATAGT+TGG + chr7_2:77124128-77124147 None:intergenic 20.0%
!!! ATTATAGAGAGGAATTTTTT+TGG + chr7_2:77124731-77124750 None:intergenic 20.0%
!! ATTTATTCATTCTCTTGAAA+TGG - chr7_2:77122465-77122484 Msa1078250:three_prime_UTR 20.0%
!!! ATTTTTGTCTTTAGAGTTTA+AGG + chr7_2:77122771-77122790 None:intergenic 20.0%
!! TTTATTGAGTGAAATTAATG+TGG - chr7_2:77123810-77123829 Msa1078250:CDS 20.0%
!!! TAAAAATCTCTGAAAATAGT+TGG + chr7_2:77124128-77124147 None:intergenic 20.0%
!!! ATTATAGAGAGGAATTTTTT+TGG + chr7_2:77124731-77124750 None:intergenic 20.0%
! AAACACAATGCATATTCTTT+GGG + chr7_2:77123365-77123384 None:intergenic 25.0%
! AAAACACAATGCATATTCTT+TGG + chr7_2:77123366-77123385 None:intergenic 25.0%
!!! AGAATATGCATTGTGTTTTT+TGG - chr7_2:77123367-77123386 Msa1078250:intron 25.0%
!!! TATGTTTTTAGTCCTAATTG+AGG - chr7_2:77123615-77123634 Msa1078250:CDS 25.0%
!! CACTTTTGTTAATTAATTGC+AGG - chr7_2:77124221-77124240 Msa1078250:CDS 25.0%
! ATTATGATCTCATAGTTGTT+GGG - chr7_2:77124361-77124380 Msa1078250:CDS 25.0%
! TATTGTCACATATAGATCAT+GGG - chr7_2:77124653-77124672 Msa1078250:five_prime_UTR 25.0%
! TTTATAGCCTTCTTATACTT+TGG + chr7_2:77124692-77124711 None:intergenic 25.0%
! AAACACAATGCATATTCTTT+GGG + chr7_2:77123365-77123384 None:intergenic 25.0%
! AAAACACAATGCATATTCTT+TGG + chr7_2:77123366-77123385 None:intergenic 25.0%
!!! AGAATATGCATTGTGTTTTT+TGG - chr7_2:77123367-77123386 Msa1078250:intron 25.0%
!!! TATGTTTTTAGTCCTAATTG+AGG - chr7_2:77123615-77123634 Msa1078250:CDS 25.0%
!! CACTTTTGTTAATTAATTGC+AGG - chr7_2:77124221-77124240 Msa1078250:CDS 25.0%
! ATTATGATCTCATAGTTGTT+GGG - chr7_2:77124361-77124380 Msa1078250:CDS 25.0%
! TATTGTCACATATAGATCAT+GGG - chr7_2:77124653-77124672 Msa1078250:five_prime_UTR 25.0%
! TTTATAGCCTTCTTATACTT+TGG + chr7_2:77124692-77124711 None:intergenic 25.0%
!! AAGTCTTGATTTGCATATAC+AGG + chr7_2:77122432-77122451 None:intergenic 30.0%
AACGACAAAGTCAAATAAGA+GGG + chr7_2:77122546-77122565 None:intergenic 30.0%
TAACGACAAAGTCAAATAAG+AGG + chr7_2:77122547-77122566 None:intergenic 30.0%
TGACGAAATATTTGCAATCA+TGG - chr7_2:77122637-77122656 Msa1078250:CDS 30.0%
ATTTGCAATCATGGTACTTA+TGG - chr7_2:77122646-77122665 Msa1078250:CDS 30.0%
!!! ATATGCATTGTGTTTTTTGG+TGG - chr7_2:77123370-77123389 Msa1078250:intron 30.0%
TAAGGTTCGTTATGCAAAAT+GGG - chr7_2:77123464-77123483 Msa1078250:intron 30.0%
! TATAACTTTGGTCGGTATTT+TGG + chr7_2:77123528-77123547 None:intergenic 30.0%
AATGAACAGACAAATAGAAC+AGG - chr7_2:77123564-77123583 Msa1078250:intron 30.0%
AAGCTACAATTTCCTCAATT+AGG + chr7_2:77123630-77123649 None:intergenic 30.0%
! CTATCACTCACTCTTTTATT+GGG + chr7_2:77123892-77123911 None:intergenic 30.0%
! TCTATCACTCACTCTTTTAT+TGG + chr7_2:77123893-77123912 None:intergenic 30.0%
TGTTAATTAATTGCAGGAGT+TGG - chr7_2:77124227-77124246 Msa1078250:CDS 30.0%
AACAGTGAAGTATATTGAGA+AGG - chr7_2:77124290-77124309 Msa1078250:CDS 30.0%
ACAGTGAAGTATATTGAGAA+GGG - chr7_2:77124291-77124310 Msa1078250:CDS 30.0%
GATTATGATCTCATAGTTGT+TGG - chr7_2:77124360-77124379 Msa1078250:CDS 30.0%
GATGTTAAAATGTCTCCTAT+GGG + chr7_2:77124456-77124475 None:intergenic 30.0%
CTATTGTCACATATAGATCA+TGG - chr7_2:77124652-77124671 Msa1078250:five_prime_UTR 30.0%
TACAACTCCAAAGTATAAGA+AGG - chr7_2:77124682-77124701 Msa1078250:five_prime_UTR 30.0%
!! AAGTCTTGATTTGCATATAC+AGG + chr7_2:77122432-77122451 None:intergenic 30.0%
AACGACAAAGTCAAATAAGA+GGG + chr7_2:77122546-77122565 None:intergenic 30.0%
TAACGACAAAGTCAAATAAG+AGG + chr7_2:77122547-77122566 None:intergenic 30.0%
TGACGAAATATTTGCAATCA+TGG - chr7_2:77122637-77122656 Msa1078250:CDS 30.0%
ATTTGCAATCATGGTACTTA+TGG - chr7_2:77122646-77122665 Msa1078250:CDS 30.0%
!!! ATATGCATTGTGTTTTTTGG+TGG - chr7_2:77123370-77123389 Msa1078250:intron 30.0%
TAAGGTTCGTTATGCAAAAT+GGG - chr7_2:77123464-77123483 Msa1078250:intron 30.0%
! TATAACTTTGGTCGGTATTT+TGG + chr7_2:77123528-77123547 None:intergenic 30.0%
AATGAACAGACAAATAGAAC+AGG - chr7_2:77123564-77123583 Msa1078250:intron 30.0%
AAGCTACAATTTCCTCAATT+AGG + chr7_2:77123630-77123649 None:intergenic 30.0%
! CTATCACTCACTCTTTTATT+GGG + chr7_2:77123892-77123911 None:intergenic 30.0%
! TCTATCACTCACTCTTTTAT+TGG + chr7_2:77123893-77123912 None:intergenic 30.0%
TGTTAATTAATTGCAGGAGT+TGG - chr7_2:77124227-77124246 Msa1078250:CDS 30.0%
AACAGTGAAGTATATTGAGA+AGG - chr7_2:77124290-77124309 Msa1078250:CDS 30.0%
ACAGTGAAGTATATTGAGAA+GGG - chr7_2:77124291-77124310 Msa1078250:CDS 30.0%
GATTATGATCTCATAGTTGT+TGG - chr7_2:77124360-77124379 Msa1078250:CDS 30.0%
GATGTTAAAATGTCTCCTAT+GGG + chr7_2:77124456-77124475 None:intergenic 30.0%
CTATTGTCACATATAGATCA+TGG - chr7_2:77124652-77124671 Msa1078250:five_prime_UTR 30.0%
TACAACTCCAAAGTATAAGA+AGG - chr7_2:77124682-77124701 Msa1078250:five_prime_UTR 30.0%
ACGACAAAGTCAAATAAGAG+GGG + chr7_2:77122545-77122564 None:intergenic 35.0%
TGTAGATTGCCATTACTAGT+GGG + chr7_2:77122697-77122716 None:intergenic 35.0%
TTGTAGATTGCCATTACTAG+TGG + chr7_2:77122698-77122717 None:intergenic 35.0%
!! GTTGATGATAGATGGAATGT+TGG + chr7_2:77122837-77122856 None:intergenic 35.0%
!! TCAATGAGGTTGATGATAGA+TGG + chr7_2:77122845-77122864 None:intergenic 35.0%
! ATGGTTTTCCTTTCTTCAAC+CGG - chr7_2:77122972-77122991 Msa1078250:intron 35.0%
AATGGCATAACCGTATTGTT+GGG - chr7_2:77123008-77123027 Msa1078250:intron 35.0%
TATTACCCTTCCACAAACAT+TGG - chr7_2:77123158-77123177 Msa1078250:intron 35.0%
! TCTAGAGTTGGGAAAGAAAA+TGG - chr7_2:77123411-77123430 Msa1078250:intron 35.0%
AAAGAAAATGGCTGAACATC+CGG - chr7_2:77123423-77123442 Msa1078250:intron 35.0%
TTGCATAACGAACCTTACAA+CGG + chr7_2:77123461-77123480 None:intergenic 35.0%
GTAAGGTTCGTTATGCAAAA+TGG - chr7_2:77123463-77123482 Msa1078250:intron 35.0%
GTTATGCAAAATGGGATGAT+CGG - chr7_2:77123472-77123491 Msa1078250:intron 35.0%
TGAGAAGCTATAACTTTGGT+CGG + chr7_2:77123536-77123555 None:intergenic 35.0%
TTCTCAGTACAAAGTTAGCT+AGG - chr7_2:77123648-77123667 Msa1078250:CDS 35.0%
! TGGAACCTACACTTTGAAAA+TGG - chr7_2:77123830-77123849 Msa1078250:CDS 35.0%
AAAATGGAACCCACATAAAG+TGG - chr7_2:77123846-77123865 Msa1078250:CDS 35.0%
GGATGTTAAAATGTCTCCTA+TGG + chr7_2:77124457-77124476 None:intergenic 35.0%
!! GACATTTTAACATCCTCAAC+AGG - chr7_2:77124462-77124481 Msa1078250:CDS 35.0%
ACGACAAAGTCAAATAAGAG+GGG + chr7_2:77122545-77122564 None:intergenic 35.0%
TGTAGATTGCCATTACTAGT+GGG + chr7_2:77122697-77122716 None:intergenic 35.0%
TTGTAGATTGCCATTACTAG+TGG + chr7_2:77122698-77122717 None:intergenic 35.0%
!! GTTGATGATAGATGGAATGT+TGG + chr7_2:77122837-77122856 None:intergenic 35.0%
!! TCAATGAGGTTGATGATAGA+TGG + chr7_2:77122845-77122864 None:intergenic 35.0%
! ATGGTTTTCCTTTCTTCAAC+CGG - chr7_2:77122972-77122991 Msa1078250:intron 35.0%
AATGGCATAACCGTATTGTT+GGG - chr7_2:77123008-77123027 Msa1078250:intron 35.0%
TATTACCCTTCCACAAACAT+TGG - chr7_2:77123158-77123177 Msa1078250:intron 35.0%
! TCTAGAGTTGGGAAAGAAAA+TGG - chr7_2:77123411-77123430 Msa1078250:intron 35.0%
AAAGAAAATGGCTGAACATC+CGG - chr7_2:77123423-77123442 Msa1078250:intron 35.0%
TTGCATAACGAACCTTACAA+CGG + chr7_2:77123461-77123480 None:intergenic 35.0%
GTAAGGTTCGTTATGCAAAA+TGG - chr7_2:77123463-77123482 Msa1078250:intron 35.0%
GTTATGCAAAATGGGATGAT+CGG - chr7_2:77123472-77123491 Msa1078250:intron 35.0%
TGAGAAGCTATAACTTTGGT+CGG + chr7_2:77123536-77123555 None:intergenic 35.0%
TTCTCAGTACAAAGTTAGCT+AGG - chr7_2:77123648-77123667 Msa1078250:CDS 35.0%
! TGGAACCTACACTTTGAAAA+TGG - chr7_2:77123830-77123849 Msa1078250:CDS 35.0%
AAAATGGAACCCACATAAAG+TGG - chr7_2:77123846-77123865 Msa1078250:CDS 35.0%
GGATGTTAAAATGTCTCCTA+TGG + chr7_2:77124457-77124476 None:intergenic 35.0%
!! GACATTTTAACATCCTCAAC+AGG - chr7_2:77124462-77124481 Msa1078250:CDS 35.0%
GAAAATGTCATAACCACCTC+AGG + chr7_2:77122508-77122527 None:intergenic 40.0%
GTAGATTGCCATTACTAGTG+GGG + chr7_2:77122696-77122715 None:intergenic 40.0%
AAGGATTCGTAGCTCATCTA+CGG + chr7_2:77122795-77122814 None:intergenic 40.0%
!! TGCTACGAGTTGATTCAATG+AGG + chr7_2:77122859-77122878 None:intergenic 40.0%
CATGATGAAGAGTTTGAGGA+GGG + chr7_2:77122891-77122910 None:intergenic 40.0%
ACGTTCATCTTCCATCATCA+TGG - chr7_2:77122931-77122950 Msa1078250:intron 40.0%
GAATGGCATAACCGTATTGT+TGG - chr7_2:77123007-77123026 Msa1078250:intron 40.0%
ATGGCATAACCGTATTGTTG+GGG - chr7_2:77123009-77123028 Msa1078250:intron 40.0%
GATGAAAAGCCCCAACAATA+CGG + chr7_2:77123021-77123040 None:intergenic 40.0%
GGACTATAACCTTACCCAAT+TGG + chr7_2:77123054-77123073 None:intergenic 40.0%
TTCTCTTTCCACAATGCATG+AGG - chr7_2:77123093-77123112 Msa1078250:intron 40.0%
GCATATATCCTCATGCATTG+TGG + chr7_2:77123104-77123123 None:intergenic 40.0%
AATGCTGGAAATGAGTGGAT+AGG - chr7_2:77123235-77123254 Msa1078250:intron 40.0%
AGTGGATAGGTGTGAACAAA+AGG - chr7_2:77123248-77123267 Msa1078250:intron 40.0%
GTGGATAGGTGTGAACAAAA+GGG - chr7_2:77123249-77123268 Msa1078250:intron 40.0%
TCGAAGAATTTGGGCTTAGA+TGG - chr7_2:77123331-77123350 Msa1078250:intron 40.0%
CGACTGAGAAGCTATAACTT+TGG + chr7_2:77123540-77123559 None:intergenic 40.0%
TCAGTACAAAGTTAGCTAGG+AGG - chr7_2:77123651-77123670 Msa1078250:CDS 40.0%
! GGGTTCCATTTTCAAAGTGT+AGG + chr7_2:77123838-77123857 None:intergenic 40.0%
TATGACCCACCACTTTATGT+GGG + chr7_2:77123858-77123877 None:intergenic 40.0%
ATTGCAGGAGTTGGATGAAA+AGG - chr7_2:77124236-77124255 Msa1078250:CDS 40.0%
GTGAAGTATATTGAGAAGGG+TGG - chr7_2:77124294-77124313 Msa1078250:CDS 40.0%
AAGTATATTGAGAAGGGTGG+TGG - chr7_2:77124297-77124316 Msa1078250:CDS 40.0%
TGGAGGAGGTGATAACATTA+GGG - chr7_2:77124328-77124347 Msa1078250:CDS 40.0%
TGATCTCATAGTTGTTGGGA+AGG - chr7_2:77124365-77124384 Msa1078250:CDS 40.0%
GATCTCATAGTTGTTGGGAA+GGG - chr7_2:77124366-77124385 Msa1078250:CDS 40.0%
AATGTTGCAGAGGTTTCATC+TGG - chr7_2:77124579-77124598 Msa1078250:five_prime_UTR 40.0%
GAAAATGTCATAACCACCTC+AGG + chr7_2:77122508-77122527 None:intergenic 40.0%
GTAGATTGCCATTACTAGTG+GGG + chr7_2:77122696-77122715 None:intergenic 40.0%
AAGGATTCGTAGCTCATCTA+CGG + chr7_2:77122795-77122814 None:intergenic 40.0%
!! TGCTACGAGTTGATTCAATG+AGG + chr7_2:77122859-77122878 None:intergenic 40.0%
CATGATGAAGAGTTTGAGGA+GGG + chr7_2:77122891-77122910 None:intergenic 40.0%
ACGTTCATCTTCCATCATCA+TGG - chr7_2:77122931-77122950 Msa1078250:intron 40.0%
GAATGGCATAACCGTATTGT+TGG - chr7_2:77123007-77123026 Msa1078250:intron 40.0%
ATGGCATAACCGTATTGTTG+GGG - chr7_2:77123009-77123028 Msa1078250:intron 40.0%
GATGAAAAGCCCCAACAATA+CGG + chr7_2:77123021-77123040 None:intergenic 40.0%
GGACTATAACCTTACCCAAT+TGG + chr7_2:77123054-77123073 None:intergenic 40.0%
TTCTCTTTCCACAATGCATG+AGG - chr7_2:77123093-77123112 Msa1078250:intron 40.0%
GCATATATCCTCATGCATTG+TGG + chr7_2:77123104-77123123 None:intergenic 40.0%
AATGCTGGAAATGAGTGGAT+AGG - chr7_2:77123235-77123254 Msa1078250:intron 40.0%
AGTGGATAGGTGTGAACAAA+AGG - chr7_2:77123248-77123267 Msa1078250:intron 40.0%
GTGGATAGGTGTGAACAAAA+GGG - chr7_2:77123249-77123268 Msa1078250:intron 40.0%
TCGAAGAATTTGGGCTTAGA+TGG - chr7_2:77123331-77123350 Msa1078250:intron 40.0%
CGACTGAGAAGCTATAACTT+TGG + chr7_2:77123540-77123559 None:intergenic 40.0%
TCAGTACAAAGTTAGCTAGG+AGG - chr7_2:77123651-77123670 Msa1078250:CDS 40.0%
! GGGTTCCATTTTCAAAGTGT+AGG + chr7_2:77123838-77123857 None:intergenic 40.0%
TATGACCCACCACTTTATGT+GGG + chr7_2:77123858-77123877 None:intergenic 40.0%
ATTGCAGGAGTTGGATGAAA+AGG - chr7_2:77124236-77124255 Msa1078250:CDS 40.0%
GTGAAGTATATTGAGAAGGG+TGG - chr7_2:77124294-77124313 Msa1078250:CDS 40.0%
AAGTATATTGAGAAGGGTGG+TGG - chr7_2:77124297-77124316 Msa1078250:CDS 40.0%
TGGAGGAGGTGATAACATTA+GGG - chr7_2:77124328-77124347 Msa1078250:CDS 40.0%
TGATCTCATAGTTGTTGGGA+AGG - chr7_2:77124365-77124384 Msa1078250:CDS 40.0%
GATCTCATAGTTGTTGGGAA+GGG - chr7_2:77124366-77124385 Msa1078250:CDS 40.0%
AATGTTGCAGAGGTTTCATC+TGG - chr7_2:77124579-77124598 Msa1078250:five_prime_UTR 40.0%
ACATGTTCCAGTACATCCTG+AGG - chr7_2:77122489-77122508 Msa1078250:three_prime_UTR 45.0%
ATAACCACCTCAGGATGTAC+TGG + chr7_2:77122499-77122518 None:intergenic 45.0%
TACTAGTGGGGTTGTGATGA+AGG + chr7_2:77122684-77122703 None:intergenic 45.0%
CATCACAACCCCACTAGTAA+TGG - chr7_2:77122685-77122704 Msa1078250:CDS 45.0%
ACCAAGACAATTCGCAAGCT+AGG - chr7_2:77122737-77122756 Msa1078250:CDS 45.0%
! ATGGAATGTTGGTTGAACCG+TGG + chr7_2:77122826-77122845 None:intergenic 45.0%
GCATGATGAAGAGTTTGAGG+AGG + chr7_2:77122892-77122911 None:intergenic 45.0%
GCTGCATGATGAAGAGTTTG+AGG + chr7_2:77122895-77122914 None:intergenic 45.0%
GTTCATCGCGCTCGTAAAAA+TGG - chr7_2:77122953-77122972 Msa1078250:intron 45.0%
CGATTGAACCGGTTGAAGAA+AGG + chr7_2:77122983-77123002 None:intergenic 45.0%
! ACCGGTTCAATCGTGAAGAA+TGG - chr7_2:77122990-77123009 Msa1078250:intron 45.0%
GCCATTCTTCACGATTGAAC+CGG + chr7_2:77122994-77123013 None:intergenic 45.0%
TCATCTGACCTCTAGCCAAT+TGG - chr7_2:77123036-77123055 Msa1078250:intron 45.0%
CATCTGACCTCTAGCCAATT+GGG - chr7_2:77123037-77123056 Msa1078250:intron 45.0%
AACCTTACCCAATTGGCTAG+AGG + chr7_2:77123047-77123066 None:intergenic 45.0%
GGTTATAGTCCAGTCCACTA+CGG - chr7_2:77123063-77123082 Msa1078250:intron 45.0%
AAGAGAAGATATCGCCGTAG+TGG + chr7_2:77123080-77123099 None:intergenic 45.0%
! CTCTCTTTTCGTCTGCTATG+TGG + chr7_2:77123126-77123145 None:intergenic 45.0%
TACCCTTCCACAAACATTGG+CGG - chr7_2:77123161-77123180 Msa1078250:intron 45.0%
CAATGAGTTCCATGCAGTGT+CGG - chr7_2:77123210-77123229 Msa1078250:intron 45.0%
AAAGAATGCTCCTTGCTCTG+TGG - chr7_2:77123276-77123295 Msa1078250:intron 45.0%
AAGAATGCTCCTTGCTCTGT+GGG - chr7_2:77123277-77123296 Msa1078250:intron 45.0%
!!! CGGTATTTTGGTCAGGTGAT+TGG + chr7_2:77123516-77123535 None:intergenic 45.0%
!!! CTTTGGTCGGTATTTTGGTC+AGG + chr7_2:77123523-77123542 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG - chr7_2:77123849-77123868 Msa1078250:CDS 45.0%
TGGAACCCACATAAAGTGGT+GGG - chr7_2:77123850-77123869 Msa1078250:CDS 45.0%
GTATGACCCACCACTTTATG+TGG + chr7_2:77123859-77123878 None:intergenic 45.0%
! GAGTGCTCAAAAGAGAGTGT+TGG - chr7_2:77123915-77123934 Msa1078250:CDS 45.0%
GGAGTTGGATGAAAAGGCAA+TGG - chr7_2:77124242-77124261 Msa1078250:CDS 45.0%
GTTGGATGAAAAGGCAATGG+AGG - chr7_2:77124245-77124264 Msa1078250:CDS 45.0%
GAGGAGTTTCAAAGCAAGTG+TGG - chr7_2:77124264-77124283 Msa1078250:CDS 45.0%
GTGGAGGAGGTGATAACATT+AGG - chr7_2:77124327-77124346 Msa1078250:CDS 45.0%
GGAGGAGGTGATAACATTAG+GGG - chr7_2:77124329-77124348 Msa1078250:CDS 45.0%
TCATAGTTGTTGGGAAGGGT+CGG - chr7_2:77124370-77124389 Msa1078250:CDS 45.0%
AGTTCTGCCACCATAATCGA+CGG + chr7_2:77124399-77124418 None:intergenic 45.0%
AGAGCTGAACATGCAGAGTT+AGG - chr7_2:77124429-77124448 Msa1078250:CDS 45.0%
ATCCTCAACAGGAAGCAAGA+TGG - chr7_2:77124473-77124492 Msa1078250:CDS 45.0%
! AGAAGATGCACCGATGTACA+CGG - chr7_2:77124539-77124558 Msa1078250:five_prime_UTR 45.0%
GCATGATGAGAATGTTGCAG+AGG - chr7_2:77124569-77124588 Msa1078250:five_prime_UTR 45.0%
ACATGTTCCAGTACATCCTG+AGG - chr7_2:77122489-77122508 Msa1078250:three_prime_UTR 45.0%
ATAACCACCTCAGGATGTAC+TGG + chr7_2:77122499-77122518 None:intergenic 45.0%
TACTAGTGGGGTTGTGATGA+AGG + chr7_2:77122684-77122703 None:intergenic 45.0%
CATCACAACCCCACTAGTAA+TGG - chr7_2:77122685-77122704 Msa1078250:CDS 45.0%
ACCAAGACAATTCGCAAGCT+AGG - chr7_2:77122737-77122756 Msa1078250:CDS 45.0%
! ATGGAATGTTGGTTGAACCG+TGG + chr7_2:77122826-77122845 None:intergenic 45.0%
GCATGATGAAGAGTTTGAGG+AGG + chr7_2:77122892-77122911 None:intergenic 45.0%
GCTGCATGATGAAGAGTTTG+AGG + chr7_2:77122895-77122914 None:intergenic 45.0%
GTTCATCGCGCTCGTAAAAA+TGG - chr7_2:77122953-77122972 Msa1078250:intron 45.0%
CGATTGAACCGGTTGAAGAA+AGG + chr7_2:77122983-77123002 None:intergenic 45.0%
! ACCGGTTCAATCGTGAAGAA+TGG - chr7_2:77122990-77123009 Msa1078250:intron 45.0%
GCCATTCTTCACGATTGAAC+CGG + chr7_2:77122994-77123013 None:intergenic 45.0%
TCATCTGACCTCTAGCCAAT+TGG - chr7_2:77123036-77123055 Msa1078250:intron 45.0%
CATCTGACCTCTAGCCAATT+GGG - chr7_2:77123037-77123056 Msa1078250:intron 45.0%
AACCTTACCCAATTGGCTAG+AGG + chr7_2:77123047-77123066 None:intergenic 45.0%
GGTTATAGTCCAGTCCACTA+CGG - chr7_2:77123063-77123082 Msa1078250:intron 45.0%
AAGAGAAGATATCGCCGTAG+TGG + chr7_2:77123080-77123099 None:intergenic 45.0%
! CTCTCTTTTCGTCTGCTATG+TGG + chr7_2:77123126-77123145 None:intergenic 45.0%
TACCCTTCCACAAACATTGG+CGG - chr7_2:77123161-77123180 Msa1078250:intron 45.0%
CAATGAGTTCCATGCAGTGT+CGG - chr7_2:77123210-77123229 Msa1078250:intron 45.0%
AAAGAATGCTCCTTGCTCTG+TGG - chr7_2:77123276-77123295 Msa1078250:intron 45.0%
AAGAATGCTCCTTGCTCTGT+GGG - chr7_2:77123277-77123296 Msa1078250:intron 45.0%
!!! CGGTATTTTGGTCAGGTGAT+TGG + chr7_2:77123516-77123535 None:intergenic 45.0%
!!! CTTTGGTCGGTATTTTGGTC+AGG + chr7_2:77123523-77123542 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG - chr7_2:77123849-77123868 Msa1078250:CDS 45.0%
TGGAACCCACATAAAGTGGT+GGG - chr7_2:77123850-77123869 Msa1078250:CDS 45.0%
GTATGACCCACCACTTTATG+TGG + chr7_2:77123859-77123878 None:intergenic 45.0%
! GAGTGCTCAAAAGAGAGTGT+TGG - chr7_2:77123915-77123934 Msa1078250:CDS 45.0%
GGAGTTGGATGAAAAGGCAA+TGG - chr7_2:77124242-77124261 Msa1078250:CDS 45.0%
GTTGGATGAAAAGGCAATGG+AGG - chr7_2:77124245-77124264 Msa1078250:CDS 45.0%
GAGGAGTTTCAAAGCAAGTG+TGG - chr7_2:77124264-77124283 Msa1078250:CDS 45.0%
GTGGAGGAGGTGATAACATT+AGG - chr7_2:77124327-77124346 Msa1078250:CDS 45.0%
GGAGGAGGTGATAACATTAG+GGG - chr7_2:77124329-77124348 Msa1078250:CDS 45.0%
TCATAGTTGTTGGGAAGGGT+CGG - chr7_2:77124370-77124389 Msa1078250:CDS 45.0%
AGTTCTGCCACCATAATCGA+CGG + chr7_2:77124399-77124418 None:intergenic 45.0%
AGAGCTGAACATGCAGAGTT+AGG - chr7_2:77124429-77124448 Msa1078250:CDS 45.0%
ATCCTCAACAGGAAGCAAGA+TGG - chr7_2:77124473-77124492 Msa1078250:CDS 45.0%
! AGAAGATGCACCGATGTACA+CGG - chr7_2:77124539-77124558 Msa1078250:five_prime_UTR 45.0%
GCATGATGAGAATGTTGCAG+AGG - chr7_2:77124569-77124588 Msa1078250:five_prime_UTR 45.0%
TGTTCCAGTACATCCTGAGG+TGG - chr7_2:77122492-77122511 Msa1078250:three_prime_UTR 50.0%
TAGTGGGGTTGTGATGAAGG+TGG + chr7_2:77122681-77122700 None:intergenic 50.0%
GCAATCTACAAACCAGCTCG+TGG - chr7_2:77122707-77122726 Msa1078250:CDS 50.0%
! GCCTAGCTTGCGAATTGTCT+TGG + chr7_2:77122741-77122760 None:intergenic 50.0%
CGAATCCTTGCTTGCATCCA+CGG - chr7_2:77122806-77122825 Msa1078250:CDS 50.0%
TTGAACCGTGGATGCAAGCA+AGG + chr7_2:77122814-77122833 None:intergenic 50.0%
!! CATGCAGCTTGTTGAGCTCA+CGG - chr7_2:77122907-77122926 Msa1078250:CDS 50.0%
AGCGCGATGAACCATGATGA+TGG + chr7_2:77122945-77122964 None:intergenic 50.0%
GACCTCTAGCCAATTGGGTA+AGG - chr7_2:77123042-77123061 Msa1078250:intron 50.0%
!! AAGATATCGCCGTAGTGGAC+TGG + chr7_2:77123075-77123094 None:intergenic 50.0%
AGCCGCCAATGTTTGTGGAA+GGG + chr7_2:77123166-77123185 None:intergenic 50.0%
CGGAGAATGCTGGAAATGAG+TGG - chr7_2:77123230-77123249 Msa1078250:intron 50.0%
TGGGTGTGCTTGTGGATAGA+GGG - chr7_2:77123296-77123315 Msa1078250:intron 50.0%
GTGCTTGTGGATAGAGGGTA+TGG - chr7_2:77123301-77123320 Msa1078250:intron 50.0%
! TGGATAGAGGGTATGGCCTT+GGG - chr7_2:77123308-77123327 Msa1078250:intron 50.0%
! TGGCCTTGGGTCGAAGAATT+TGG - chr7_2:77123321-77123340 Msa1078250:intron 50.0%
GGCCTTGGGTCGAAGAATTT+GGG - chr7_2:77123322-77123341 Msa1078250:intron 50.0%
AGCCCAAATTCTTCGACCCA+AGG + chr7_2:77123327-77123346 None:intergenic 50.0%
CTGTTGCAGTGACCGTTGTA+AGG - chr7_2:77123446-77123465 Msa1078250:intron 50.0%
! TCGGTTTCCGTCGATTATGG+TGG - chr7_2:77124389-77124408 Msa1078250:CDS 50.0%
CATGCAGAGTTAGGTCCCAT+AGG - chr7_2:77124438-77124457 Msa1078250:CDS 50.0%
GACCATCTTGCTTCCTGTTG+AGG + chr7_2:77124478-77124497 None:intergenic 50.0%
TGCACCTTGACCGTGTACAT+CGG + chr7_2:77124552-77124571 None:intergenic 50.0%
TGTTCCAGTACATCCTGAGG+TGG - chr7_2:77122492-77122511 Msa1078250:three_prime_UTR 50.0%
TAGTGGGGTTGTGATGAAGG+TGG + chr7_2:77122681-77122700 None:intergenic 50.0%
GCAATCTACAAACCAGCTCG+TGG - chr7_2:77122707-77122726 Msa1078250:CDS 50.0%
! GCCTAGCTTGCGAATTGTCT+TGG + chr7_2:77122741-77122760 None:intergenic 50.0%
CGAATCCTTGCTTGCATCCA+CGG - chr7_2:77122806-77122825 Msa1078250:CDS 50.0%
TTGAACCGTGGATGCAAGCA+AGG + chr7_2:77122814-77122833 None:intergenic 50.0%
!! CATGCAGCTTGTTGAGCTCA+CGG - chr7_2:77122907-77122926 Msa1078250:CDS 50.0%
AGCGCGATGAACCATGATGA+TGG + chr7_2:77122945-77122964 None:intergenic 50.0%
GACCTCTAGCCAATTGGGTA+AGG - chr7_2:77123042-77123061 Msa1078250:intron 50.0%
!! AAGATATCGCCGTAGTGGAC+TGG + chr7_2:77123075-77123094 None:intergenic 50.0%
AGCCGCCAATGTTTGTGGAA+GGG + chr7_2:77123166-77123185 None:intergenic 50.0%
CGGAGAATGCTGGAAATGAG+TGG - chr7_2:77123230-77123249 Msa1078250:intron 50.0%
TGGGTGTGCTTGTGGATAGA+GGG - chr7_2:77123296-77123315 Msa1078250:intron 50.0%
GTGCTTGTGGATAGAGGGTA+TGG - chr7_2:77123301-77123320 Msa1078250:intron 50.0%
! TGGATAGAGGGTATGGCCTT+GGG - chr7_2:77123308-77123327 Msa1078250:intron 50.0%
! TGGCCTTGGGTCGAAGAATT+TGG - chr7_2:77123321-77123340 Msa1078250:intron 50.0%
GGCCTTGGGTCGAAGAATTT+GGG - chr7_2:77123322-77123341 Msa1078250:intron 50.0%
AGCCCAAATTCTTCGACCCA+AGG + chr7_2:77123327-77123346 None:intergenic 50.0%
CTGTTGCAGTGACCGTTGTA+AGG - chr7_2:77123446-77123465 Msa1078250:intron 50.0%
! TCGGTTTCCGTCGATTATGG+TGG - chr7_2:77124389-77124408 Msa1078250:CDS 50.0%
CATGCAGAGTTAGGTCCCAT+AGG - chr7_2:77124438-77124457 Msa1078250:CDS 50.0%
GACCATCTTGCTTCCTGTTG+AGG + chr7_2:77124478-77124497 None:intergenic 50.0%
TGCACCTTGACCGTGTACAT+CGG + chr7_2:77124552-77124571 None:intergenic 50.0%
TTGGTTGTGATGCCACGAGC+TGG + chr7_2:77122722-77122741 None:intergenic 55.0%
CAGCCGCCAATGTTTGTGGA+AGG + chr7_2:77123167-77123186 None:intergenic 55.0%
CTTCCACAAACATTGGCGGC+TGG - chr7_2:77123165-77123184 Msa1078250:intron 55.0%
CTTCCAGCCGCCAATGTTTG+TGG + chr7_2:77123171-77123190 None:intergenic 55.0%
CAGCATTCTCCGACACTGCA+TGG + chr7_2:77123222-77123241 None:intergenic 55.0%
! CATGCAGTGTCGGAGAATGC+TGG - chr7_2:77123220-77123239 Msa1078250:intron 55.0%
ACAAGCACACCCACAGAGCA+AGG + chr7_2:77123289-77123308 None:intergenic 55.0%
TTGCTCTGTGGGTGTGCTTG+TGG - chr7_2:77123288-77123307 Msa1078250:intron 55.0%
GTGGGTGTGCTTGTGGATAG+AGG - chr7_2:77123295-77123314 Msa1078250:intron 55.0%
! GTGGATAGAGGGTATGGCCT+TGG - chr7_2:77123307-77123326 Msa1078250:intron 55.0%
!! GATCGCGAGGCTCTAGAGTT+GGG - chr7_2:77123400-77123419 Msa1078250:intron 55.0%
ACAACGGTCACTGCAACAGC+CGG + chr7_2:77123445-77123464 None:intergenic 55.0%
! GAAGGGTGGTGGCAACATTG+TGG - chr7_2:77124308-77124327 Msa1078250:CDS 55.0%
TGGTGGCAACATTGTGGAGG+AGG - chr7_2:77124314-77124333 Msa1078250:CDS 55.0%
! GGGTCGGTTTCCGTCGATTA+TGG - chr7_2:77124386-77124405 Msa1078250:CDS 55.0%
TGGTGGCAGAACTAGCAGAG+AGG - chr7_2:77124406-77124425 Msa1078250:CDS 55.0%
! TGCACCGATGTACACGGTCA+AGG - chr7_2:77124545-77124564 Msa1078250:five_prime_UTR 55.0%
TTGGTTGTGATGCCACGAGC+TGG + chr7_2:77122722-77122741 None:intergenic 55.0%
CAGCCGCCAATGTTTGTGGA+AGG + chr7_2:77123167-77123186 None:intergenic 55.0%
CTTCCACAAACATTGGCGGC+TGG - chr7_2:77123165-77123184 Msa1078250:intron 55.0%
CTTCCAGCCGCCAATGTTTG+TGG + chr7_2:77123171-77123190 None:intergenic 55.0%
CAGCATTCTCCGACACTGCA+TGG + chr7_2:77123222-77123241 None:intergenic 55.0%
! CATGCAGTGTCGGAGAATGC+TGG - chr7_2:77123220-77123239 Msa1078250:intron 55.0%
ACAAGCACACCCACAGAGCA+AGG + chr7_2:77123289-77123308 None:intergenic 55.0%
TTGCTCTGTGGGTGTGCTTG+TGG - chr7_2:77123288-77123307 Msa1078250:intron 55.0%
GTGGGTGTGCTTGTGGATAG+AGG - chr7_2:77123295-77123314 Msa1078250:intron 55.0%
! GTGGATAGAGGGTATGGCCT+TGG - chr7_2:77123307-77123326 Msa1078250:intron 55.0%
!! GATCGCGAGGCTCTAGAGTT+GGG - chr7_2:77123400-77123419 Msa1078250:intron 55.0%
ACAACGGTCACTGCAACAGC+CGG + chr7_2:77123445-77123464 None:intergenic 55.0%
! GAAGGGTGGTGGCAACATTG+TGG - chr7_2:77124308-77124327 Msa1078250:CDS 55.0%
TGGTGGCAACATTGTGGAGG+AGG - chr7_2:77124314-77124333 Msa1078250:CDS 55.0%
! GGGTCGGTTTCCGTCGATTA+TGG - chr7_2:77124386-77124405 Msa1078250:CDS 55.0%
TGGTGGCAGAACTAGCAGAG+AGG - chr7_2:77124406-77124425 Msa1078250:CDS 55.0%
! TGCACCGATGTACACGGTCA+AGG - chr7_2:77124545-77124564 Msa1078250:five_prime_UTR 55.0%
! TCTAGAGCCTCGCGATCGTC+AGG + chr7_2:77123397-77123416 None:intergenic 60.0%
!! CGATCGCGAGGCTCTAGAGT+TGG - chr7_2:77123399-77123418 Msa1078250:intron 60.0%
! GGGTGGTGGCAACATTGTGG+AGG - chr7_2:77124311-77124330 Msa1078250:CDS 60.0%
! TCTAGAGCCTCGCGATCGTC+AGG + chr7_2:77123397-77123416 None:intergenic 60.0%
!! CGATCGCGAGGCTCTAGAGT+TGG - chr7_2:77123399-77123418 Msa1078250:intron 60.0%
! GGGTGGTGGCAACATTGTGG+AGG - chr7_2:77124311-77124330 Msa1078250:CDS 60.0%
! TGGTGGACCTGACGATCGCG+AGG - chr7_2:77123387-77123406 Msa1078250:intron 65.0%
! TGGTGGACCTGACGATCGCG+AGG - chr7_2:77123387-77123406 Msa1078250:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 77122428 77124751 77122428 ID=Msa1078250;Name=Msa1078250
chr7_2 mRNA 77122428 77124751 77122428 ID=Msa1078250-mRNA-1;Parent=Msa1078250;Name=Msa1078250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=228|1|1|1|1|1|2|116|440
chr7_2 exon 77122428 77122936 77122428 ID=Msa1078250-mRNA-1:exon:18861;Parent=Msa1078250-mRNA-1
chr7_2 exon 77123594 77124751 77123594 ID=Msa1078250-mRNA-1:exon:18860;Parent=Msa1078250-mRNA-1
chr7_2 five_prime_UTR 77124524 77124751 77124524 ID=Msa1078250-mRNA-1:five_prime_utr;Parent=Msa1078250-mRNA-1
chr7_2 CDS 77123594 77124523 77123594 ID=Msa1078250-mRNA-1:cds;Parent=Msa1078250-mRNA-1
chr7_2 CDS 77122544 77122936 77122544 ID=Msa1078250-mRNA-1:cds;Parent=Msa1078250-mRNA-1
chr7_2 three_prime_UTR 77122428 77122543 77122428 ID=Msa1078250-mRNA-1:three_prime_utr;Parent=Msa1078250-mRNA-1
Gene Sequence

>Msa1078250

ATGGTACTTATGGCTCTGTTCACCACCTTCATCACAACCCCACTAGTAATGGCAATCTACAAACCAGCTCGTGGCATCACAACCAAGACAATTCGCAAGCTAGGCGACATGTCCTTAAACTCTAAAGACAAAAATGCCGTAGATGAGCTACGAATCCTTGCTTGCATCCACGGTTCAACCAACATTCCATCTATCATCAACCTCATTGAATCAACTCGTAGCACAAAAAATTCCCTCCTCAAACTCTTCATCATGCAGCTTGTTGAGCTCACGGAACGTTCATCTTCCATCATCATGGTTCATCGCGCTCGTAAAAATGGTTTTCCTTTCTTCAACCGGTTCAATCGTGAAGAATGGCATAACCGTATTGTTGGGGCTTTTCATCTGACCTCTAGCCAATTGGGTAAGGTTATAGTCCAGTCCACTACGGCGATATCTTCTCTTTCCACAATGCATGAGGATATATGCCACATAGCAGACGAAAAGAGAGTGACATTGATCATATTACCCTTCCACAAACATTGGCGGCTGGAAGAAGTTGATGATGAAAATAACAATGAGTTCCATGCAGTGTCGGAGAATGCTGGAAATGAGTGGATAGGTGTGAACAAAAGGGTACTAAAGAATGCTCCTTGCTCTGTGGGTGTGCTTGTGGATAGAGGGTATGGCCTTGGGTCGAAGAATTTGGGCTTAGATGGAAATATAGCCCAAAGAATATGCATTGTGTTTTTTGGTGGACCTGACGATCGCGAGGCTCTAGAGTTGGGAAAGAAAATGGCTGAACATCCGGCTGTTGCAGTGACCGTTGTAAGGTTCGTTATGCAAAATGGGATGATCGGTAATAATATAGTTTTACTCCAATCACCTGACCAAAATACCGACCAAAGTTATAGCTTCTCAGTCGCAAAAATGAACAGACAAATAGAACAGGAGTTGGATGAAAAGGCAATGGAGGAGTTTCAAAGCAAGTGTGGTGAAACAGTGAAGTATATTGAGAAGGGTGGTGGCAACATTGTGGAGGAGGTGATAACATTAGGGGAAAGCGCAGATTATGATCTCATAGTTGTTGGGAAGGGTCGGTTTCCGTCGATTATGGTGGCAGAACTAGCAGAGAGGAGAGCTGAACATGCAGAGTTAGGTCCCATAGGAGACATTTTAACATCCTCAACAGGAAGCAAGATGGTCTCATCAATACTTGTTATTCAACAACATGATGTGACATTAACAGAAGATGCACCGATGTACACGGTCAAGGTGCATGATGAGAATGTTGCAGAGGTTTCATCTGGAAGACATGAGATCACTATAGTAAATGCAATGTAA
Protein sequence

>Msa1078250

MVLMALFTTFITTPLVMAIYKPARGITTKTIRKLGDMSLNSKDKNAVDELRILACIHGSTNIPSIINLIESTRSTKNSLLKLFIMQLVELTERSSSIIMVHRARKNGFPFFNRFNREEWHNRIVGAFHLTSSQLGKVIVQSTTAISSLSTMHEDICHIADEKRVTLIILPFHKHWRLEEVDDENNNEFHAVSENAGNEWIGVNKRVLKNAPCSVGVLVDRGYGLGSKNLGLDGNIAQRICIVFFGGPDDREALELGKKMAEHPAVAVTVVRFVMQNGMIGNNIVLLQSPDQNTDQSYSFSVAKMNRQIEQELDEKAMEEFQSKCGETVKYIEKGGGNIVEEVITLGESADYDLIVVGKGRFPSIMVAELAERRAEHAELGPIGDILTSSTGSKMVSSILVIQQHDVTLTEDAPMYTVKVHDENVAEVSSGRHEITIVNAM*