AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081340 MtrunA17_Chr1g0183851 100.000 164 0 0 1 164 1 164 1.17e-120 337
Msa1081340 MtrunA17_Chr7g0268461 99.390 164 1 0 1 164 1 164 1.81e-120 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081340 AT1G09590.1 81.098 164 31 0 1 164 1 164 3.58e-101 288
Msa1081340 AT1G09690.1 81.098 164 31 0 1 164 1 164 3.58e-101 288
Msa1081340 AT1G57660.1 80.488 164 32 0 1 164 1 164 1.08e-100 286
Msa1081340 AT1G57860.1 80.488 164 32 0 1 164 1 164 1.08e-100 286

Find 76 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCTTTCTTCTCCTTCT+AGG 0.223627 7_2:-81142275 None:intergenic
ACTCTTTCTCTCGTCCATTC+AGG 0.293911 7_2:+81142330 Msa1081340:CDS
TGGGTATCTTTCTTCATCTA+TGG 0.322424 7_2:+81143585 Msa1081340:three_prime_UTR
AAACCAGGTTTAGGTCCTTC+TGG 0.327783 7_2:-81143282 None:intergenic
TCGGCGATTATGTCGATATC+AGG 0.353109 7_2:+81142399 Msa1081340:CDS
AGGACCTAAACCTGGTTTCA+TGG 0.367201 7_2:+81143287 Msa1081340:CDS
TGATGTGGTTAATGATCTTA+AGG 0.381458 7_2:+81143350 Msa1081340:CDS
GGTTAACGGTGCCGTTCATA+AGG 0.392360 7_2:+81142421 Msa1081340:CDS
TCAACCATGAAACCAGGTTT+AGG 0.394105 7_2:-81143291 None:intergenic
TTAACCACATCATATGGAAT+TGG 0.408404 7_2:-81143339 None:intergenic
CTCAACACCAATAGCACGTT+TGG 0.409541 7_2:-81142495 None:intergenic
CTCTCGTCCATTCAGGAAGA+AGG 0.411770 7_2:+81142337 Msa1081340:CDS
GACATAATCGCCGATGTGAT+AGG 0.419105 7_2:-81142390 None:intergenic
AGATCATTAACCACATCATA+TGG 0.425684 7_2:-81143345 None:intergenic
ATGGGCGTACCGGTCGTGTC+TGG 0.430669 7_2:+81142465 Msa1081340:CDS
AACTCCTCGGTACACCTAGA+TGG 0.430928 7_2:-81143180 None:intergenic
TTCGAATTGCTTGTGGGTCG+TGG 0.438615 7_2:+81143547 Msa1081340:three_prime_UTR
GCATCTTTCTTCTCCTTCTA+GGG 0.447415 7_2:-81142274 None:intergenic
ATTGTACCCTTCTTCCTGAA+TGG 0.450869 7_2:-81142344 None:intergenic
AGGTTAGGAACAAGATTCTC+AGG 0.451952 7_2:+81143124 Msa1081340:intron
AAACCTGGTTTCATGGTTGA+AGG 0.456376 7_2:+81143294 Msa1081340:CDS
CATTCTTAATCTTCCTCAAA+CGG 0.463824 7_2:-81143203 None:intergenic
GGTTTATTCGAATTGCTTGT+GGG 0.466492 7_2:+81143541 Msa1081340:three_prime_UTR
AACGTTACCAAACGTGCTAT+TGG 0.472288 7_2:+81142488 Msa1081340:CDS
AGGTCCTTCTGGCTTGCGCT+TGG 0.474164 7_2:-81143271 None:intergenic
TTTATGTATGTATGAACCTA+GGG 0.474284 7_2:-81142181 None:intergenic
CTTCACTGTCTGATACGAAA+TGG 0.476379 7_2:-81142220 None:intergenic
GATTAAGAATGATCAACTTA+AGG 0.476396 7_2:+81143215 Msa1081340:CDS
TGGAGCATGTTATGCCATCT+AGG 0.488269 7_2:+81143166 Msa1081340:CDS
TATGTCGATATCAGGGTTAA+CGG 0.499321 7_2:+81142407 Msa1081340:CDS
TGGTTTATTCGAATTGCTTG+TGG 0.504861 7_2:+81143540 Msa1081340:three_prime_UTR
GTGAAGGGTTAGAAGAGGTT+CGG 0.508612 7_2:+81142237 Msa1081340:five_prime_UTR
GATGTGGTTAATGATCTTAA+GGG 0.514482 7_2:+81143351 Msa1081340:CDS
TTTGTTGCGTTGCTGCTGAC+GGG 0.514504 7_2:+81143620 Msa1081340:three_prime_UTR
CATGGTTGAAGGAGCTACAT+TGG 0.515633 7_2:+81143305 Msa1081340:CDS
CAAACGTGCTATTGGTGTTG+AGG 0.526075 7_2:+81142496 Msa1081340:CDS
TCAACTTAAGGCTGAGGCTA+AGG 0.526123 7_2:+81143227 Msa1081340:CDS
AGAAAGATGCCGGCTGGTCA+TGG 0.530667 7_2:+81142287 Msa1081340:exon
AAGTTCTACCATGGGCGTAC+CGG 0.536603 7_2:+81142455 Msa1081340:CDS
GAATGATCAACTTAAGGCTG+AGG 0.542856 7_2:+81143221 Msa1081340:CDS
GTTTGTTGCGTTGCTGCTGA+CGG 0.544760 7_2:+81143619 Msa1081340:three_prime_UTR
GTACCGAGGAGTTCCGTTTG+AGG 0.555417 7_2:+81143190 Msa1081340:CDS
GTTAACGGTGCCGTTCATAA+GGG 0.556218 7_2:+81142422 Msa1081340:CDS
GATCTCAAACCATGACCAGC+CGG 0.563821 7_2:-81142296 None:intergenic
AAGGCTGAGGCTAAGGCAAA+GGG 0.569105 7_2:+81143234 Msa1081340:CDS
ATTTCGTATCAGACAGTGAA+GGG 0.573181 7_2:+81142222 Msa1081340:five_prime_UTR
TAAGGCTGAGGCTAAGGCAA+AGG 0.574426 7_2:+81143233 Msa1081340:CDS
CGCCGATGTGATAGGTTCTG+AGG 0.582425 7_2:-81142382 None:intergenic
TAACATGCTCCACTCGAACA+TGG 0.582558 7_2:-81143155 None:intergenic
AGGAGAAGAAAGATGCCGGC+TGG 0.584433 7_2:+81142281 Msa1081340:exon
AGCACCAAGCGCAAGCCAGA+AGG 0.595144 7_2:+81143267 Msa1081340:CDS
TACTCCAATTCCATATGATG+TGG 0.596403 7_2:+81143335 Msa1081340:CDS
TAGAAGGAGAAGAAAGATGC+CGG 0.597264 7_2:+81142277 Msa1081340:exon
TCTCGTCCATTCAGGAAGAA+GGG 0.597777 7_2:+81142338 Msa1081340:CDS
GTGATAGGTTCTGAGGTAAG+TGG 0.598261 7_2:-81142375 None:intergenic
GGTAACGTTCCAGACACGAC+CGG 0.599652 7_2:-81142474 None:intergenic
GGTTCTGAGGTAAGTGGCGA+GGG 0.600826 7_2:-81142369 None:intergenic
CTTCCTCAAACGGAACTCCT+CGG 0.602385 7_2:-81143193 None:intergenic
AAAGCCCAATAAGAAACCCT+AGG 0.603225 7_2:+81142165 None:intergenic
AGACAGTGAAGGGTTAGAAG+AGG 0.603903 7_2:+81142232 Msa1081340:five_prime_UTR
CGCCCATGGTAGAACTTGTG+TGG 0.607884 7_2:-81142449 None:intergenic
GCTCCTTCAACCATGAAACC+AGG 0.609967 7_2:-81143297 None:intergenic
TGCCACACAAGTTCTACCAT+GGG 0.615951 7_2:+81142447 Msa1081340:CDS
AGGTTCTGAGGTAAGTGGCG+AGG 0.615968 7_2:-81142370 None:intergenic
CGTGGCACTGATCGTTACGA+TGG 0.616626 7_2:+81143565 Msa1081340:three_prime_UTR
AGACACGACCGGTACGCCCA+TGG 0.619384 7_2:-81142463 None:intergenic
ATGCCACACAAGTTCTACCA+TGG 0.619578 7_2:+81142446 Msa1081340:CDS
CGGCGATTATGTCGATATCA+GGG 0.624782 7_2:+81142400 Msa1081340:CDS
AAGCCAGAAGGACCTAAACC+TGG 0.625100 7_2:+81143279 Msa1081340:CDS
GTGGTTAATGATCTTAAGGG+AGG 0.627017 7_2:+81143354 Msa1081340:CDS
GTGTGGCATACCCTTATGAA+CGG 0.627528 7_2:-81142432 None:intergenic
CATTTCGTATCAGACAGTGA+AGG 0.636593 7_2:+81142221 Msa1081340:five_prime_UTR
GTGGCACTGATCGTTACGAT+GGG 0.641644 7_2:+81143566 Msa1081340:three_prime_UTR
GAAGAGAATCCATGTTCGAG+TGG 0.642302 7_2:+81143146 Msa1081340:CDS
TACCTCAGAACCTATCACAT+CGG 0.680253 7_2:+81142380 Msa1081340:CDS
TATGCCATCTAGGTGTACCG+AGG 0.747455 7_2:+81143176 Msa1081340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTGATTTATTGTATTTT+AGG + chr7_2:81142638-81142657 Msa1081340:intron 10.0%
!!! TATTGATTTATTGTATTTTA+GGG + chr7_2:81142639-81142658 Msa1081340:intron 10.0%
!!! ATTATATCTTTTTAATAATG+TGG + chr7_2:81143520-81143539 Msa1081340:three_prime_UTR 10.0%
!!! TTATTGATTTATTGTATTTT+AGG + chr7_2:81142638-81142657 Msa1081340:intron 10.0%
!!! TATTGATTTATTGTATTTTA+GGG + chr7_2:81142639-81142658 Msa1081340:intron 10.0%
!!! ATTATATCTTTTTAATAATG+TGG + chr7_2:81143520-81143539 Msa1081340:three_prime_UTR 10.0%
!! ATATAATTACATTGATCAAA+TGG - chr7_2:81143004-81143023 None:intergenic 15.0%
!!! ATTATATGTTGTTATTTATC+TGG + chr7_2:81143017-81143036 Msa1081340:intron 15.0%
!! ATATAATTACATTGATCAAA+TGG - chr7_2:81143004-81143023 None:intergenic 15.0%
!!! ATTATATGTTGTTATTTATC+TGG + chr7_2:81143017-81143036 Msa1081340:intron 15.0%
!!! GAATTTTGTAAATTTACTTG+TGG + chr7_2:81142841-81142860 Msa1081340:intron 20.0%
!! CTAAATTGATCAAAATGAAA+CGG - chr7_2:81142875-81142894 None:intergenic 20.0%
!!! TATTGAAATATTGCTATTTG+TGG + chr7_2:81143098-81143117 Msa1081340:intron 20.0%
!!! GAATTTTGTAAATTTACTTG+TGG + chr7_2:81142841-81142860 Msa1081340:intron 20.0%
!! CTAAATTGATCAAAATGAAA+CGG - chr7_2:81142875-81142894 None:intergenic 20.0%
!!! TATTGAAATATTGCTATTTG+TGG + chr7_2:81143098-81143117 Msa1081340:intron 20.0%
! TTTATGTATGTATGAACCTA+GGG - chr7_2:81142184-81142203 None:intergenic 25.0%
!! TTTTATGTATGTATGAACCT+AGG - chr7_2:81142185-81142204 None:intergenic 25.0%
! AAAACCACAGAACTAAAATT+CGG - chr7_2:81142558-81142577 None:intergenic 25.0%
!! TGTGTGCTTTAATTACATTT+TGG + chr7_2:81142684-81142703 Msa1081340:intron 25.0%
! GATTAAGAATGATCAACTTA+AGG + chr7_2:81143215-81143234 Msa1081340:CDS 25.0%
! AAGACAGTCTAAAAAACATT+AGG - chr7_2:81143400-81143419 None:intergenic 25.0%
!!! TTAGACTGTCTTATTTTGTT+TGG + chr7_2:81143408-81143427 Msa1081340:three_prime_UTR 25.0%
! TTTATGTATGTATGAACCTA+GGG - chr7_2:81142184-81142203 None:intergenic 25.0%
!! TTTTATGTATGTATGAACCT+AGG - chr7_2:81142185-81142204 None:intergenic 25.0%
! AAAACCACAGAACTAAAATT+CGG - chr7_2:81142558-81142577 None:intergenic 25.0%
!! TGTGTGCTTTAATTACATTT+TGG + chr7_2:81142684-81142703 Msa1081340:intron 25.0%
! GATTAAGAATGATCAACTTA+AGG + chr7_2:81143215-81143234 Msa1081340:CDS 25.0%
! AAGACAGTCTAAAAAACATT+AGG - chr7_2:81143400-81143419 None:intergenic 25.0%
!!! TTAGACTGTCTTATTTTGTT+TGG + chr7_2:81143408-81143427 Msa1081340:three_prime_UTR 25.0%
!!! ATTTCCGAATTTTAGTTCTG+TGG + chr7_2:81142551-81142570 Msa1081340:intron 30.0%
! AGGGTTTATGATTTTCTATG+CGG + chr7_2:81142658-81142677 Msa1081340:intron 30.0%
!! AATATTGCTATTTGTGGTTC+AGG + chr7_2:81143104-81143123 Msa1081340:intron 30.0%
CATTCTTAATCTTCCTCAAA+CGG - chr7_2:81143206-81143225 None:intergenic 30.0%
TTAACCACATCATATGGAAT+TGG - chr7_2:81143342-81143361 None:intergenic 30.0%
AGATCATTAACCACATCATA+TGG - chr7_2:81143348-81143367 None:intergenic 30.0%
TGATGTGGTTAATGATCTTA+AGG + chr7_2:81143350-81143369 Msa1081340:CDS 30.0%
GATGTGGTTAATGATCTTAA+GGG + chr7_2:81143351-81143370 Msa1081340:CDS 30.0%
! TTTTGTGAAATGTGAAATCG+AGG + chr7_2:81143433-81143452 Msa1081340:three_prime_UTR 30.0%
!!! ATTTCCGAATTTTAGTTCTG+TGG + chr7_2:81142551-81142570 Msa1081340:intron 30.0%
! AGGGTTTATGATTTTCTATG+CGG + chr7_2:81142658-81142677 Msa1081340:intron 30.0%
!! AATATTGCTATTTGTGGTTC+AGG + chr7_2:81143104-81143123 Msa1081340:intron 30.0%
CATTCTTAATCTTCCTCAAA+CGG - chr7_2:81143206-81143225 None:intergenic 30.0%
TTAACCACATCATATGGAAT+TGG - chr7_2:81143342-81143361 None:intergenic 30.0%
AGATCATTAACCACATCATA+TGG - chr7_2:81143348-81143367 None:intergenic 30.0%
TGATGTGGTTAATGATCTTA+AGG + chr7_2:81143350-81143369 Msa1081340:CDS 30.0%
GATGTGGTTAATGATCTTAA+GGG + chr7_2:81143351-81143370 Msa1081340:CDS 30.0%
! TTTTGTGAAATGTGAAATCG+AGG + chr7_2:81143433-81143452 Msa1081340:three_prime_UTR 30.0%
ATTTCGTATCAGACAGTGAA+GGG + chr7_2:81142222-81142241 Msa1081340:five_prime_UTR 35.0%
TATGTCGATATCAGGGTTAA+CGG + chr7_2:81142407-81142426 Msa1081340:CDS 35.0%
AGTGTTTGCAAGAGTTTATC+CGG + chr7_2:81143050-81143069 Msa1081340:intron 35.0%
TACTCCAATTCCATATGATG+TGG + chr7_2:81143335-81143354 Msa1081340:CDS 35.0%
TGGTTTATTCGAATTGCTTG+TGG + chr7_2:81143540-81143559 Msa1081340:three_prime_UTR 35.0%
GGTTTATTCGAATTGCTTGT+GGG + chr7_2:81143541-81143560 Msa1081340:three_prime_UTR 35.0%
TGGGTATCTTTCTTCATCTA+TGG + chr7_2:81143585-81143604 Msa1081340:three_prime_UTR 35.0%
ATTTCGTATCAGACAGTGAA+GGG + chr7_2:81142222-81142241 Msa1081340:five_prime_UTR 35.0%
TATGTCGATATCAGGGTTAA+CGG + chr7_2:81142407-81142426 Msa1081340:CDS 35.0%
AGTGTTTGCAAGAGTTTATC+CGG + chr7_2:81143050-81143069 Msa1081340:intron 35.0%
TACTCCAATTCCATATGATG+TGG + chr7_2:81143335-81143354 Msa1081340:CDS 35.0%
TGGTTTATTCGAATTGCTTG+TGG + chr7_2:81143540-81143559 Msa1081340:three_prime_UTR 35.0%
GGTTTATTCGAATTGCTTGT+GGG + chr7_2:81143541-81143560 Msa1081340:three_prime_UTR 35.0%
TGGGTATCTTTCTTCATCTA+TGG + chr7_2:81143585-81143604 Msa1081340:three_prime_UTR 35.0%
CTTCACTGTCTGATACGAAA+TGG - chr7_2:81142223-81142242 None:intergenic 40.0%
CATTTCGTATCAGACAGTGA+AGG + chr7_2:81142221-81142240 Msa1081340:five_prime_UTR 40.0%
GCATCTTTCTTCTCCTTCTA+GGG - chr7_2:81142277-81142296 None:intergenic 40.0%
TAGAAGGAGAAGAAAGATGC+CGG + chr7_2:81142277-81142296 Msa1081340:exon 40.0%
ATTGTACCCTTCTTCCTGAA+TGG - chr7_2:81142347-81142366 None:intergenic 40.0%
TACCTCAGAACCTATCACAT+CGG + chr7_2:81142380-81142399 Msa1081340:CDS 40.0%
AACGTTACCAAACGTGCTAT+TGG + chr7_2:81142488-81142507 Msa1081340:CDS 40.0%
CAAATGGATGCTTAATGCAC+AGG - chr7_2:81142988-81143007 None:intergenic 40.0%
AAATCATGCAGAGCAAGAAC+CGG - chr7_2:81143072-81143091 None:intergenic 40.0%
! TGCTATTTGTGGTTCAGGTT+AGG + chr7_2:81143109-81143128 Msa1081340:intron 40.0%
AGGTTAGGAACAAGATTCTC+AGG + chr7_2:81143124-81143143 Msa1081340:intron 40.0%
GAATGATCAACTTAAGGCTG+AGG + chr7_2:81143221-81143240 Msa1081340:CDS 40.0%
TCAACCATGAAACCAGGTTT+AGG - chr7_2:81143294-81143313 None:intergenic 40.0%
AAACCTGGTTTCATGGTTGA+AGG + chr7_2:81143294-81143313 Msa1081340:CDS 40.0%
GTGGTTAATGATCTTAAGGG+AGG + chr7_2:81143354-81143373 Msa1081340:CDS 40.0%
CTTCACTGTCTGATACGAAA+TGG - chr7_2:81142223-81142242 None:intergenic 40.0%
CATTTCGTATCAGACAGTGA+AGG + chr7_2:81142221-81142240 Msa1081340:five_prime_UTR 40.0%
GCATCTTTCTTCTCCTTCTA+GGG - chr7_2:81142277-81142296 None:intergenic 40.0%
TAGAAGGAGAAGAAAGATGC+CGG + chr7_2:81142277-81142296 Msa1081340:exon 40.0%
ATTGTACCCTTCTTCCTGAA+TGG - chr7_2:81142347-81142366 None:intergenic 40.0%
TACCTCAGAACCTATCACAT+CGG + chr7_2:81142380-81142399 Msa1081340:CDS 40.0%
AACGTTACCAAACGTGCTAT+TGG + chr7_2:81142488-81142507 Msa1081340:CDS 40.0%
CAAATGGATGCTTAATGCAC+AGG - chr7_2:81142988-81143007 None:intergenic 40.0%
AAATCATGCAGAGCAAGAAC+CGG - chr7_2:81143072-81143091 None:intergenic 40.0%
! TGCTATTTGTGGTTCAGGTT+AGG + chr7_2:81143109-81143128 Msa1081340:intron 40.0%
AGGTTAGGAACAAGATTCTC+AGG + chr7_2:81143124-81143143 Msa1081340:intron 40.0%
GAATGATCAACTTAAGGCTG+AGG + chr7_2:81143221-81143240 Msa1081340:CDS 40.0%
TCAACCATGAAACCAGGTTT+AGG - chr7_2:81143294-81143313 None:intergenic 40.0%
AAACCTGGTTTCATGGTTGA+AGG + chr7_2:81143294-81143313 Msa1081340:CDS 40.0%
GTGGTTAATGATCTTAAGGG+AGG + chr7_2:81143354-81143373 Msa1081340:CDS 40.0%
AGACAGTGAAGGGTTAGAAG+AGG + chr7_2:81142232-81142251 Msa1081340:five_prime_UTR 45.0%
GTGAAGGGTTAGAAGAGGTT+CGG + chr7_2:81142237-81142256 Msa1081340:five_prime_UTR 45.0%
GGCATCTTTCTTCTCCTTCT+AGG - chr7_2:81142278-81142297 None:intergenic 45.0%
ACTCTTTCTCTCGTCCATTC+AGG + chr7_2:81142330-81142349 Msa1081340:CDS 45.0%
TCTCGTCCATTCAGGAAGAA+GGG + chr7_2:81142338-81142357 Msa1081340:CDS 45.0%
!! GTGATAGGTTCTGAGGTAAG+TGG - chr7_2:81142378-81142397 None:intergenic 45.0%
GACATAATCGCCGATGTGAT+AGG - chr7_2:81142393-81142412 None:intergenic 45.0%
TCGGCGATTATGTCGATATC+AGG + chr7_2:81142399-81142418 Msa1081340:CDS 45.0%
CGGCGATTATGTCGATATCA+GGG + chr7_2:81142400-81142419 Msa1081340:CDS 45.0%
!! GTTAACGGTGCCGTTCATAA+GGG + chr7_2:81142422-81142441 Msa1081340:CDS 45.0%
GTGTGGCATACCCTTATGAA+CGG - chr7_2:81142435-81142454 None:intergenic 45.0%
ATGCCACACAAGTTCTACCA+TGG + chr7_2:81142446-81142465 Msa1081340:CDS 45.0%
TGCCACACAAGTTCTACCAT+GGG + chr7_2:81142447-81142466 Msa1081340:CDS 45.0%
CTCAACACCAATAGCACGTT+TGG - chr7_2:81142498-81142517 None:intergenic 45.0%
!! CAAACGTGCTATTGGTGTTG+AGG + chr7_2:81142496-81142515 Msa1081340:CDS 45.0%
GAAGAGAATCCATGTTCGAG+TGG + chr7_2:81143146-81143165 Msa1081340:CDS 45.0%
TAACATGCTCCACTCGAACA+TGG - chr7_2:81143158-81143177 None:intergenic 45.0%
TGGAGCATGTTATGCCATCT+AGG + chr7_2:81143166-81143185 Msa1081340:CDS 45.0%
TCAACTTAAGGCTGAGGCTA+AGG + chr7_2:81143227-81143246 Msa1081340:CDS 45.0%
AAACCAGGTTTAGGTCCTTC+TGG - chr7_2:81143285-81143304 None:intergenic 45.0%
AGGACCTAAACCTGGTTTCA+TGG + chr7_2:81143287-81143306 Msa1081340:CDS 45.0%
CATGGTTGAAGGAGCTACAT+TGG + chr7_2:81143305-81143324 Msa1081340:CDS 45.0%
AGACAGTGAAGGGTTAGAAG+AGG + chr7_2:81142232-81142251 Msa1081340:five_prime_UTR 45.0%
GTGAAGGGTTAGAAGAGGTT+CGG + chr7_2:81142237-81142256 Msa1081340:five_prime_UTR 45.0%
GGCATCTTTCTTCTCCTTCT+AGG - chr7_2:81142278-81142297 None:intergenic 45.0%
ACTCTTTCTCTCGTCCATTC+AGG + chr7_2:81142330-81142349 Msa1081340:CDS 45.0%
TCTCGTCCATTCAGGAAGAA+GGG + chr7_2:81142338-81142357 Msa1081340:CDS 45.0%
!! GTGATAGGTTCTGAGGTAAG+TGG - chr7_2:81142378-81142397 None:intergenic 45.0%
GACATAATCGCCGATGTGAT+AGG - chr7_2:81142393-81142412 None:intergenic 45.0%
TCGGCGATTATGTCGATATC+AGG + chr7_2:81142399-81142418 Msa1081340:CDS 45.0%
CGGCGATTATGTCGATATCA+GGG + chr7_2:81142400-81142419 Msa1081340:CDS 45.0%
!! GTTAACGGTGCCGTTCATAA+GGG + chr7_2:81142422-81142441 Msa1081340:CDS 45.0%
GTGTGGCATACCCTTATGAA+CGG - chr7_2:81142435-81142454 None:intergenic 45.0%
ATGCCACACAAGTTCTACCA+TGG + chr7_2:81142446-81142465 Msa1081340:CDS 45.0%
TGCCACACAAGTTCTACCAT+GGG + chr7_2:81142447-81142466 Msa1081340:CDS 45.0%
CTCAACACCAATAGCACGTT+TGG - chr7_2:81142498-81142517 None:intergenic 45.0%
!! CAAACGTGCTATTGGTGTTG+AGG + chr7_2:81142496-81142515 Msa1081340:CDS 45.0%
GAAGAGAATCCATGTTCGAG+TGG + chr7_2:81143146-81143165 Msa1081340:CDS 45.0%
TAACATGCTCCACTCGAACA+TGG - chr7_2:81143158-81143177 None:intergenic 45.0%
TGGAGCATGTTATGCCATCT+AGG + chr7_2:81143166-81143185 Msa1081340:CDS 45.0%
TCAACTTAAGGCTGAGGCTA+AGG + chr7_2:81143227-81143246 Msa1081340:CDS 45.0%
AAACCAGGTTTAGGTCCTTC+TGG - chr7_2:81143285-81143304 None:intergenic 45.0%
AGGACCTAAACCTGGTTTCA+TGG + chr7_2:81143287-81143306 Msa1081340:CDS 45.0%
CATGGTTGAAGGAGCTACAT+TGG + chr7_2:81143305-81143324 Msa1081340:CDS 45.0%
TGCGACGCAAAAACCCTAGA+AGG + chr7_2:81142261-81142280 Msa1081340:five_prime_UTR 50.0%
GATCTCAAACCATGACCAGC+CGG - chr7_2:81142299-81142318 None:intergenic 50.0%
CTCTCGTCCATTCAGGAAGA+AGG + chr7_2:81142337-81142356 Msa1081340:CDS 50.0%
!! GGTTAACGGTGCCGTTCATA+AGG + chr7_2:81142421-81142440 Msa1081340:CDS 50.0%
AAGTTCTACCATGGGCGTAC+CGG + chr7_2:81142455-81142474 Msa1081340:CDS 50.0%
TATGCCATCTAGGTGTACCG+AGG + chr7_2:81143176-81143195 Msa1081340:CDS 50.0%
AACTCCTCGGTACACCTAGA+TGG - chr7_2:81143183-81143202 None:intergenic 50.0%
CTTCCTCAAACGGAACTCCT+CGG - chr7_2:81143196-81143215 None:intergenic 50.0%
TAAGGCTGAGGCTAAGGCAA+AGG + chr7_2:81143233-81143252 Msa1081340:CDS 50.0%
AAGGCTGAGGCTAAGGCAAA+GGG + chr7_2:81143234-81143253 Msa1081340:CDS 50.0%
AAGCCAGAAGGACCTAAACC+TGG + chr7_2:81143279-81143298 Msa1081340:CDS 50.0%
GCTCCTTCAACCATGAAACC+AGG - chr7_2:81143300-81143319 None:intergenic 50.0%
TTCGAATTGCTTGTGGGTCG+TGG + chr7_2:81143547-81143566 Msa1081340:three_prime_UTR 50.0%
!! GTGGCACTGATCGTTACGAT+GGG + chr7_2:81143566-81143585 Msa1081340:three_prime_UTR 50.0%
! GTTTGTTGCGTTGCTGCTGA+CGG + chr7_2:81143619-81143638 Msa1081340:three_prime_UTR 50.0%
TTTGTTGCGTTGCTGCTGAC+GGG + chr7_2:81143620-81143639 Msa1081340:three_prime_UTR 50.0%
TGCGACGCAAAAACCCTAGA+AGG + chr7_2:81142261-81142280 Msa1081340:five_prime_UTR 50.0%
GATCTCAAACCATGACCAGC+CGG - chr7_2:81142299-81142318 None:intergenic 50.0%
CTCTCGTCCATTCAGGAAGA+AGG + chr7_2:81142337-81142356 Msa1081340:CDS 50.0%
!! GGTTAACGGTGCCGTTCATA+AGG + chr7_2:81142421-81142440 Msa1081340:CDS 50.0%
AAGTTCTACCATGGGCGTAC+CGG + chr7_2:81142455-81142474 Msa1081340:CDS 50.0%
TATGCCATCTAGGTGTACCG+AGG + chr7_2:81143176-81143195 Msa1081340:CDS 50.0%
AACTCCTCGGTACACCTAGA+TGG - chr7_2:81143183-81143202 None:intergenic 50.0%
CTTCCTCAAACGGAACTCCT+CGG - chr7_2:81143196-81143215 None:intergenic 50.0%
TAAGGCTGAGGCTAAGGCAA+AGG + chr7_2:81143233-81143252 Msa1081340:CDS 50.0%
AAGGCTGAGGCTAAGGCAAA+GGG + chr7_2:81143234-81143253 Msa1081340:CDS 50.0%
AAGCCAGAAGGACCTAAACC+TGG + chr7_2:81143279-81143298 Msa1081340:CDS 50.0%
GCTCCTTCAACCATGAAACC+AGG - chr7_2:81143300-81143319 None:intergenic 50.0%
TTCGAATTGCTTGTGGGTCG+TGG + chr7_2:81143547-81143566 Msa1081340:three_prime_UTR 50.0%
!! GTGGCACTGATCGTTACGAT+GGG + chr7_2:81143566-81143585 Msa1081340:three_prime_UTR 50.0%
! GTTTGTTGCGTTGCTGCTGA+CGG + chr7_2:81143619-81143638 Msa1081340:three_prime_UTR 50.0%
TTTGTTGCGTTGCTGCTGAC+GGG + chr7_2:81143620-81143639 Msa1081340:three_prime_UTR 50.0%
AGGAGAAGAAAGATGCCGGC+TGG + chr7_2:81142281-81142300 Msa1081340:exon 55.0%
! AGAAAGATGCCGGCTGGTCA+TGG + chr7_2:81142287-81142306 Msa1081340:exon 55.0%
!! GGTTCTGAGGTAAGTGGCGA+GGG - chr7_2:81142372-81142391 None:intergenic 55.0%
!! AGGTTCTGAGGTAAGTGGCG+AGG - chr7_2:81142373-81142392 None:intergenic 55.0%
CGCCGATGTGATAGGTTCTG+AGG - chr7_2:81142385-81142404 None:intergenic 55.0%
CGCCCATGGTAGAACTTGTG+TGG - chr7_2:81142452-81142471 None:intergenic 55.0%
GGTAACGTTCCAGACACGAC+CGG - chr7_2:81142477-81142496 None:intergenic 55.0%
GTACCGAGGAGTTCCGTTTG+AGG + chr7_2:81143190-81143209 Msa1081340:CDS 55.0%
!! CGTGGCACTGATCGTTACGA+TGG + chr7_2:81143565-81143584 Msa1081340:three_prime_UTR 55.0%
AGGAGAAGAAAGATGCCGGC+TGG + chr7_2:81142281-81142300 Msa1081340:exon 55.0%
! AGAAAGATGCCGGCTGGTCA+TGG + chr7_2:81142287-81142306 Msa1081340:exon 55.0%
!! GGTTCTGAGGTAAGTGGCGA+GGG - chr7_2:81142372-81142391 None:intergenic 55.0%
!! AGGTTCTGAGGTAAGTGGCG+AGG - chr7_2:81142373-81142392 None:intergenic 55.0%
CGCCGATGTGATAGGTTCTG+AGG - chr7_2:81142385-81142404 None:intergenic 55.0%
CGCCCATGGTAGAACTTGTG+TGG - chr7_2:81142452-81142471 None:intergenic 55.0%
GGTAACGTTCCAGACACGAC+CGG - chr7_2:81142477-81142496 None:intergenic 55.0%
GTACCGAGGAGTTCCGTTTG+AGG + chr7_2:81143190-81143209 Msa1081340:CDS 55.0%
!! CGTGGCACTGATCGTTACGA+TGG + chr7_2:81143565-81143584 Msa1081340:three_prime_UTR 55.0%
AGCACCAAGCGCAAGCCAGA+AGG + chr7_2:81143267-81143286 Msa1081340:CDS 60.0%
!! AGGTCCTTCTGGCTTGCGCT+TGG - chr7_2:81143274-81143293 None:intergenic 60.0%
AGCACCAAGCGCAAGCCAGA+AGG + chr7_2:81143267-81143286 Msa1081340:CDS 60.0%
!! AGGTCCTTCTGGCTTGCGCT+TGG - chr7_2:81143274-81143293 None:intergenic 60.0%
AGACACGACCGGTACGCCCA+TGG - chr7_2:81142466-81142485 None:intergenic 65.0%
! ATGGGCGTACCGGTCGTGTC+TGG + chr7_2:81142465-81142484 Msa1081340:CDS 65.0%
AGACACGACCGGTACGCCCA+TGG - chr7_2:81142466-81142485 None:intergenic 65.0%
! ATGGGCGTACCGGTCGTGTC+TGG + chr7_2:81142465-81142484 Msa1081340:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81142177 81143674 81142177 ID=Msa1081340;Name=Msa1081340
chr7_2 mRNA 81142177 81143674 81142177 ID=Msa1081340-mRNA-1;Parent=Msa1081340;Name=Msa1081340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|291|164
chr7_2 exon 81142177 81142529 81142177 ID=Msa1081340-mRNA-1:exon:20675;Parent=Msa1081340-mRNA-1
chr7_2 exon 81143126 81143674 81143126 ID=Msa1081340-mRNA-1:exon:20676;Parent=Msa1081340-mRNA-1
chr7_2 five_prime_UTR 81142177 81142292 81142177 ID=Msa1081340-mRNA-1:five_prime_utr;Parent=Msa1081340-mRNA-1
chr7_2 CDS 81142293 81142529 81142293 ID=Msa1081340-mRNA-1:cds;Parent=Msa1081340-mRNA-1
chr7_2 CDS 81143126 81143383 81143126 ID=Msa1081340-mRNA-1:cds;Parent=Msa1081340-mRNA-1
chr7_2 three_prime_UTR 81143384 81143674 81143384 ID=Msa1081340-mRNA-1:three_prime_utr;Parent=Msa1081340-mRNA-1
Gene Sequence

>Msa1081340

ATGCCGGCTGGTCATGGTTTGAGATCTCGCACGAGAGACTCTTTCTCTCGTCCATTCAGGAAGAAGGGTACAATCGCCCTCGCCACTTACCTCAGAACCTATCACATCGGCGATTATGTCGATATCAGGGTTAACGGTGCCGTTCATAAGGGTATGCCACACAAGTTCTACCATGGGCGTACCGGTCGTGTCTGGAACGTTACCAAACGTGCTATTGGTGTTGAGGTTAACAAACAAGTTAGGAACAAGATTCTCAGGAAGAGAATCCATGTTCGAGTGGAGCATGTTATGCCATCTAGGTGTACCGAGGAGTTCCGTTTGAGGAAGATTAAGAATGATCAACTTAAGGCTGAGGCTAAGGCAAAGGGTGAAGTCATTAGCACCAAGCGCAAGCCAGAAGGACCTAAACCTGGTTTCATGGTTGAAGGAGCTACATTGGAAACTGTTACTCCAATTCCATATGATGTGGTTAATGATCTTAAGGGAGGATACTAG
Protein sequence

>Msa1081340

MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY*