Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250820 | XP_013469779.1 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250820 | sp|Q8GTE3|RS3A_CICAR | 92.720 | 261 | 19 | 0 | 1 | 261 | 1 | 261 | 4.49e-175 | 485 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250820 | B7FLW8 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0250820 | 0.896338 | 4.059619e-76 | -8.615850e-47 |
| Msa0002790 | Msa0250820 | 0.857063 | 2.107000e-62 | -8.615850e-47 |
| Msa0003780 | Msa0250820 | 0.870974 | 9.725220e-67 | -8.615850e-47 |
| Msa0032780 | Msa0250820 | 0.826746 | 2.291120e-54 | -8.615850e-47 |
| Msa0044890 | Msa0250820 | 0.841947 | 3.487937e-58 | -8.615850e-47 |
| Msa0049370 | Msa0250820 | 0.807647 | 4.563432e-50 | -8.615850e-47 |
| Msa0068970 | Msa0250820 | 0.838460 | 2.837984e-57 | -8.615850e-47 |
| Msa0074030 | Msa0250820 | 0.830982 | 2.160225e-55 | -8.615850e-47 |
| Msa0085780 | Msa0250820 | 0.818891 | 1.547019e-52 | -8.615850e-47 |
| Msa0086750 | Msa0250820 | 0.860468 | 2.022507e-63 | -8.615850e-47 |
| Msa0091880 | Msa0250820 | 0.822340 | 2.496228e-53 | -8.615850e-47 |
| Msa0122290 | Msa0250820 | 0.802900 | 4.505262e-49 | -8.615850e-47 |
| Msa0140850 | Msa0250820 | 0.821062 | 4.929548e-53 | -8.615850e-47 |
| Msa0146340 | Msa0250820 | 0.884305 | 2.147522e-71 | -8.615850e-47 |
| Msa0149200 | Msa0250820 | 0.811676 | 6.216210e-51 | -8.615850e-47 |
| Msa0172900 | Msa0250820 | 0.808569 | 2.903818e-50 | -8.615850e-47 |
| Msa0173530 | Msa0250820 | 0.800769 | 1.233609e-48 | -8.615850e-47 |
| Msa0183090 | Msa0250820 | 0.867468 | 1.338241e-65 | -8.615850e-47 |
| Msa0184650 | Msa0250820 | 0.857010 | 2.184060e-62 | -8.615850e-47 |
| Msa0187930 | Msa0250820 | 0.801512 | 8.695673e-49 | -8.615850e-47 |
| Msa0189700 | Msa0250820 | 0.858845 | 6.228609e-63 | -8.615850e-47 |
| Msa0209020 | Msa0250820 | 0.801484 | 8.809407e-49 | -8.615850e-47 |
| Msa0210330 | Msa0250820 | 0.872330 | 3.455124e-67 | -8.615850e-47 |
| Msa0210360 | Msa0250820 | 0.836982 | 6.800163e-57 | -8.615850e-47 |
| Msa0222730 | Msa0250820 | 0.830018 | 3.719727e-55 | -8.615850e-47 |
| Msa0230490 | Msa0250820 | 0.814643 | 1.387497e-51 | -8.615850e-47 |
| Msa0232010 | Msa0250820 | 0.861726 | 8.375880e-64 | -8.615850e-47 |
| Msa0232080 | Msa0250820 | 0.863994 | 1.672513e-64 | -8.615850e-47 |
| Msa0244780 | Msa0250820 | 0.808294 | 3.323460e-50 | -8.615850e-47 |
| Msa0250820 | Msa0250870 | 0.949574 | 9.656385e-108 | -8.615850e-47 |
| Msa0250820 | Msa0257450 | 0.840795 | 7.009401e-58 | -8.615850e-47 |
| Msa0250820 | Msa0264010 | 0.904336 | 1.364724e-79 | -8.615850e-47 |
| Msa0250820 | Msa0268130 | 0.805287 | 1.435736e-49 | -8.615850e-47 |
| Msa0250820 | Msa0289580 | 0.876209 | 1.674977e-68 | -8.615850e-47 |
| Msa0250820 | Msa0289610 | 0.869295 | 3.445970e-66 | -8.615850e-47 |
| Msa0250820 | Msa0298990 | 0.814193 | 1.745438e-51 | -8.615850e-47 |
| Msa0250820 | Msa0321640 | 0.805001 | 1.648204e-49 | -8.615850e-47 |
| Msa0250820 | Msa0327300 | 0.871245 | 7.913261e-67 | -8.615850e-47 |
| Msa0250820 | Msa0327330 | 0.911822 | 3.933987e-83 | -8.615850e-47 |
| Msa0250820 | Msa0335730 | 0.809569 | 1.773742e-50 | -8.615850e-47 |
| Msa0250820 | Msa0336010 | 0.850136 | 2.064229e-60 | -8.615850e-47 |
| Msa0250820 | Msa0342850 | 0.894267 | 2.895847e-75 | -8.615850e-47 |
| Msa0250820 | Msa0369450 | 0.800669 | 1.293407e-48 | -8.615850e-47 |
| Msa0250820 | Msa0393280 | 0.807029 | 6.171400e-50 | -8.615850e-47 |
| Msa0250820 | Msa0481850 | 0.812119 | 4.977085e-51 | -8.615850e-47 |
| Msa0250820 | Msa0482650 | 0.802847 | 4.620053e-49 | -8.615850e-47 |
| Msa0250820 | Msa0483110 | 0.837741 | 4.345522e-57 | -8.615850e-47 |
| Msa0250820 | Msa0486070 | 0.837356 | 5.454417e-57 | -8.615850e-47 |
| Msa0250820 | Msa0521050 | 0.802738 | 4.865062e-49 | -8.615850e-47 |
| Msa0250820 | Msa0575170 | 0.830024 | 3.706400e-55 | -8.615850e-47 |
| Msa0250820 | Msa0588360 | 0.845117 | 4.961094e-59 | -8.615850e-47 |
| Msa0250820 | Msa0622750 | 0.803352 | 3.631244e-49 | -8.615850e-47 |
| Msa0250820 | Msa0685460 | 0.816429 | 5.554642e-52 | -8.615850e-47 |
| Msa0250820 | Msa0698780 | 0.827910 | 1.205044e-54 | -8.615850e-47 |
| Msa0250820 | Msa0792420 | 0.800798 | 1.217288e-48 | -8.615850e-47 |
| Msa0250820 | Msa0792760 | 0.811274 | 7.597444e-51 | -8.615850e-47 |
| Msa0250820 | Msa0881290 | 0.857865 | 1.219806e-62 | -8.615850e-47 |
| Msa0250820 | Msa0891710 | 0.815985 | 6.981946e-52 | -8.615850e-47 |
| Msa0250820 | Msa0902760 | 0.805974 | 1.030133e-49 | -8.615850e-47 |
| Msa0250820 | Msa0953310 | 0.852262 | 5.180291e-61 | -8.615850e-47 |
| Msa0250820 | Msa1006840 | 0.814296 | 1.656216e-51 | -8.615850e-47 |
| Msa0250820 | Msa1010310 | 0.806165 | 9.391756e-50 | -8.615850e-47 |
| Msa0250820 | Msa1012740 | 0.826441 | 2.708614e-54 | -8.615850e-47 |
| Msa0250820 | Msa1013400 | 0.814099 | 1.830759e-51 | -8.615850e-47 |
| Msa0250820 | Msa1042780 | 0.800327 | 1.518329e-48 | -8.615850e-47 |
| Msa0250820 | Msa1043690 | 0.840516 | 8.293678e-58 | -8.615850e-47 |
| Msa0250820 | Msa1051880 | 0.814703 | 1.346243e-51 | -8.615850e-47 |
| Msa0250820 | Msa1078870 | 0.833578 | 4.920399e-56 | -8.615850e-47 |
| Msa0250820 | Msa1078980 | 0.808598 | 2.862751e-50 | -8.615850e-47 |
| Msa0250820 | Msa1079920 | 0.855707 | 5.266708e-62 | -8.615850e-47 |
| Msa0250820 | Msa1080350 | 0.832855 | 7.448152e-56 | -8.615850e-47 |
| Msa0250820 | Msa1081150 | 0.809687 | 1.673243e-50 | -8.615850e-47 |
| Msa0250820 | Msa1081340 | 0.840355 | 9.139164e-58 | -8.615850e-47 |
| Msa0250820 | Msa1088490 | 0.822295 | 2.557486e-53 | -8.615850e-47 |
| Msa0250820 | Msa1088940 | 0.823395 | 1.417682e-53 | -8.615850e-47 |
| Msa0250820 | Msa1093530 | 0.806640 | 7.455956e-50 | -8.615850e-47 |
| Msa0250820 | Msa1104140 | 0.828605 | 8.191986e-55 | -8.615850e-47 |
| Msa0250820 | Msa1124850 | 0.851868 | 6.704428e-61 | -8.615850e-47 |
| Msa0250820 | Msa1125860 | 0.837066 | 6.473231e-57 | -8.615850e-47 |
| Msa0250820 | Msa1126060 | 0.832593 | 8.654382e-56 | -8.615850e-47 |
| Msa0250820 | Msa1128120 | 0.895042 | 1.395594e-75 | -8.615850e-47 |
| Msa0250820 | Msa1165580 | 0.864465 | 1.192481e-64 | -8.615850e-47 |
| Msa0250820 | Msa1165940 | 0.806670 | 7.347262e-50 | -8.615850e-47 |
| Msa0250820 | Msa1169180 | 0.812764 | 3.598153e-51 | -8.615850e-47 |
| Msa0250820 | Msa1213480 | 0.830047 | 3.659394e-55 | -8.615850e-47 |
| Msa0250820 | Msa1215820 | 0.895400 | 9.934593e-76 | -8.615850e-47 |
| Msa0250820 | Msa1256840 | 0.804264 | 2.347903e-49 | -8.615850e-47 |
| Msa0250820 | Msa1257510 | 0.813253 | 2.810974e-51 | -8.615850e-47 |
| Msa0250820 | Msa1295150 | 0.827463 | 1.543126e-54 | -8.615850e-47 |
| Msa0250820 | Msa1295170 | 0.866755 | 2.261162e-65 | -8.615850e-47 |
| Msa0250820 | Msa1300380 | 0.829117 | 6.158003e-55 | -8.615850e-47 |
| Msa0250820 | Msa1311400 | 0.802335 | 5.889822e-49 | -8.615850e-47 |
| Msa0250820 | Msa1321790 | 0.807773 | 4.290761e-50 | -8.615850e-47 |
| Msa0250820 | Msa1332250 | 0.823589 | 1.277085e-53 | -8.615850e-47 |
| Msa0250820 | Msa1338190 | 0.878276 | 3.200509e-69 | -8.615850e-47 |
| Msa0250820 | Msa1343260 | 0.858428 | 8.292021e-63 | -8.615850e-47 |
| Msa0250820 | Msa1362210 | 0.864388 | 1.260806e-64 | -8.615850e-47 |
| Msa0250820 | Msa1363330 | 0.806600 | 7.603537e-50 | -8.615850e-47 |
| Msa0250820 | Msa1366180 | 0.841193 | 5.512685e-58 | -8.615850e-47 |
| Msa0250820 | Msa1374120 | 0.841301 | 5.162715e-58 | -8.615850e-47 |
| Msa0250820 | Msa1382620 | 0.815866 | 7.423214e-52 | -8.615850e-47 |
| Msa0250820 | Msa1386600 | 0.807475 | 4.963447e-50 | -8.615850e-47 |
| Msa0250820 | Msa1399530 | 0.851320 | 9.582701e-61 | -8.615850e-47 |
| Msa0250820 | Msa1407070 | 0.822268 | 2.593891e-53 | -8.615850e-47 |
| Msa0250820 | Msa1418690 | 0.835095 | 2.048545e-56 | -8.615850e-47 |
| Msa0250820 | Msa1418760 | 0.825511 | 4.503774e-54 | -8.615850e-47 |
| Msa0250820 | Msa1426120 | 0.832281 | 1.033880e-55 | -8.615850e-47 |
| Msa0250820 | Msa1448690 | 0.817476 | 3.233856e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250820 | MtrunA17_Chr1g0204941 | 97.701 | 261 | 6 | 0 | 1 | 261 | 1 | 261 | 0.0 | 530 |
| Msa0250820 | MtrunA17_Chr3g0081171 | 95.402 | 261 | 12 | 0 | 1 | 261 | 1 | 261 | 2.86e-180 | 495 |
| Msa0250820 | MtrunA17_Chr5g0394611 | 94.636 | 261 | 14 | 0 | 1 | 261 | 1 | 261 | 7.67e-179 | 492 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0250820 | AT3G04840.1 | 85.115 | 262 | 38 | 1 | 1 | 261 | 1 | 262 | 1.75e-163 | 453 |
| Msa0250820 | AT4G34670.1 | 85.496 | 262 | 37 | 1 | 1 | 261 | 1 | 262 | 4.54e-163 | 452 |
Find 90 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAAACTTGGGAGCTTTA+AGG | 0.168578 | 2_2:-39906577 | None:intergenic |
| AATATCATACCAATCCTTCT+TGG | 0.295389 | 2_2:-39904585 | None:intergenic |
| ATTTGGTCCTTGTAGGTTCA+TGG | 0.297913 | 2_2:+39907004 | Msa0250820:intron |
| CATATTAGTTTGTTCAAATT+CGG | 0.307811 | 2_2:+39907381 | Msa0250820:three_prime_UTR |
| GAAGGATTGGTATGATATTA+AGG | 0.312711 | 2_2:+39904589 | Msa0250820:CDS |
| GTTTCTCACCCCAAGTCTTT+TGG | 0.335249 | 2_2:+39907283 | Msa0250820:three_prime_UTR |
| CTGACTAGATTGTGCATAAC+AGG | 0.339955 | 2_2:-39906161 | None:intergenic |
| AAAGCTCCCAAGTTTGATCT+TGG | 0.357514 | 2_2:+39906581 | Msa0250820:CDS |
| TAAGAACAAGCGGATCTCTA+AGG | 0.365175 | 2_2:+39904432 | Msa0250820:CDS |
| GTTTGATCTTGGAAAATTGA+TGG | 0.369245 | 2_2:+39906592 | Msa0250820:CDS |
| GAAATTGTTGGAGCTTGATT+TGG | 0.369823 | 2_2:+39907097 | Msa0250820:exon |
| AAATTCATTCCCGAGATGAT+TGG | 0.381702 | 2_2:+39906485 | Msa0250820:CDS |
| GGGACGAAGACCATGCATTC+AGG | 0.393353 | 2_2:+39905836 | Msa0250820:CDS |
| ATCCTGTGATTTGAAGGAAT+TGG | 0.402781 | 2_2:+39906457 | Msa0250820:CDS |
| GACCCTCGTGTCTCGTACTC+AGG | 0.406163 | 2_2:+39904646 | Msa0250820:CDS |
| TACCAATCCTTCTTGGCAAA+TGG | 0.412105 | 2_2:-39904578 | None:intergenic |
| TAGAGTGTTTGAGGTTTCAT+TGG | 0.413434 | 2_2:+39905801 | Msa0250820:CDS |
| GTTTCATTGGCTGATCTTCA+AGG | 0.434675 | 2_2:+39905814 | Msa0250820:CDS |
| TGCTGATCCATTTGCCAAGA+AGG | 0.436339 | 2_2:+39904571 | Msa0250820:CDS |
| AATTCATTCCCGAGATGATT+GGG | 0.437177 | 2_2:+39906486 | Msa0250820:CDS |
| AGCATCATCCTGTGATTTGA+AGG | 0.439297 | 2_2:+39906451 | Msa0250820:CDS |
| TACCAAGAGGAGAGCTAACC+AGG | 0.440122 | 2_2:+39906129 | Msa0250820:CDS |
| TCCGTCACCATTTCATCAGC+AGG | 0.444686 | 2_2:-39907064 | None:intergenic |
| ACTCAAGCATAGAGTGTTTG+AGG | 0.454600 | 2_2:+39905792 | Msa0250820:CDS |
| ACCATGCATTCAGGAAGATT+AGG | 0.462005 | 2_2:+39905845 | Msa0250820:CDS |
| ATCCATTTGCCAAGAAGGAT+TGG | 0.465718 | 2_2:+39904576 | Msa0250820:CDS |
| ATCTCCTTCCCAATCATCTC+GGG | 0.483111 | 2_2:-39906494 | None:intergenic |
| GAGGAACCTACTGAAATTGT+TGG | 0.484047 | 2_2:+39907085 | Msa0250820:CDS |
| TGTTCAGATCCGTAGGAAGA+TGG | 0.490433 | 2_2:+39906409 | Msa0250820:intron |
| CACCTGGTTAGCTCTCCTCT+TGG | 0.502596 | 2_2:-39906131 | None:intergenic |
| AACTGACAAACTGAGGTCAT+TGG | 0.506332 | 2_2:+39906021 | Msa0250820:CDS |
| TGAGGTCATTGGTGCGTAAG+TGG | 0.507827 | 2_2:+39906032 | Msa0250820:CDS |
| CGGATCTCTAAGGGGAAGAA+AGG | 0.516719 | 2_2:+39904442 | Msa0250820:CDS |
| AAGAACAAGCGGATCTCTAA+GGG | 0.521243 | 2_2:+39904433 | Msa0250820:CDS |
| ACCTAATCTTCCTGAATGCA+TGG | 0.523822 | 2_2:-39905846 | None:intergenic |
| TTTCATTGGCTGATCTTCAA+GGG | 0.523908 | 2_2:+39905815 | Msa0250820:CDS |
| GGACGCAAAACCAAAAGACT+TGG | 0.524592 | 2_2:-39907293 | None:intergenic |
| TCATCTCGGGAATGAATTTG+CGG | 0.528925 | 2_2:-39906481 | None:intergenic |
| GGTATCATAAAACCCTAAAA+CGG | 0.529634 | 2_2:+39904347 | None:intergenic |
| AGAGAGGCCTGCTGATGAAA+TGG | 0.532099 | 2_2:+39907057 | Msa0250820:CDS |
| TCTTGCCGACATTCTTCACC+TGG | 0.534041 | 2_2:-39904625 | None:intergenic |
| AATCTCCTTCCCAATCATCT+CGG | 0.535678 | 2_2:-39906495 | None:intergenic |
| TTGAGAGCTGAAGATGTTCA+AGG | 0.537527 | 2_2:+39905868 | Msa0250820:CDS |
| GACGCAAAACCAAAAGACTT+GGG | 0.538880 | 2_2:-39907292 | None:intergenic |
| CGGATGAACACATTCTGCAA+GGG | 0.539130 | 2_2:-39906542 | None:intergenic |
| TCAAATCACAGGATGATGCT+TGG | 0.544201 | 2_2:-39906448 | None:intergenic |
| CATAACAGGTCCTCTTCACC+TGG | 0.545447 | 2_2:-39906147 | None:intergenic |
| GGAGAGCTAACCAGGTGAAG+AGG | 0.557404 | 2_2:+39906137 | Msa0250820:CDS |
| GAATGACAGATTGCTTCAGA+TGG | 0.560187 | 2_2:+39905769 | Msa0250820:intron |
| CTCTGAGGATGTTGGCACAA+AGG | 0.562498 | 2_2:+39907033 | Msa0250820:CDS |
| CTTTATTTGTTCAGATCCGT+AGG | 0.563835 | 2_2:+39906402 | Msa0250820:intron |
| CTTGTTCTTACCAACGGCCA+TGG | 0.569155 | 2_2:-39904419 | None:intergenic |
| GATCCGCTTGTTCTTACCAA+CGG | 0.569816 | 2_2:-39904425 | None:intergenic |
| GACCAATTCCTTCAAATCAC+AGG | 0.574407 | 2_2:-39906459 | None:intergenic |
| TCGGATGAACACATTCTGCA+AGG | 0.575354 | 2_2:-39906543 | None:intergenic |
| ACAATCTAGTCAGATTAGAC+AGG | 0.580594 | 2_2:+39906171 | Msa0250820:CDS |
| CAAGCTCCAACAATTTCAGT+AGG | 0.582102 | 2_2:-39907091 | None:intergenic |
| GGAGATTACTCTGAGGATGT+TGG | 0.587473 | 2_2:+39907025 | Msa0250820:CDS |
| TTCTTCACCTGGAAAACTGA+AGG | 0.588083 | 2_2:-39904614 | None:intergenic |
| TGATCTCAACCATCTTCCTA+CGG | 0.590794 | 2_2:-39906418 | None:intergenic |
| TTCATTGGCTGATCTTCAAG+GGG | 0.595752 | 2_2:+39905816 | Msa0250820:CDS |
| GTCTCACTGTTTGCAGAGTG+CGG | 0.603025 | 2_2:-39904397 | None:intergenic |
| CATTCCCGAGATGATTGGGA+AGG | 0.605231 | 2_2:+39906490 | Msa0250820:CDS |
| CTCTGCAAACAGTGAGACCA+TGG | 0.608720 | 2_2:+39904402 | Msa0250820:exon |
| TGATCTTGGAAAATTGATGG+AGG | 0.612140 | 2_2:+39906595 | Msa0250820:CDS |
| TGAGAGCTGAAGATGTTCAA+GGG | 0.612312 | 2_2:+39905869 | Msa0250820:CDS |
| ACCCTCGTGTCTCGTACTCA+GGG | 0.615233 | 2_2:+39904647 | Msa0250820:CDS |
| AACAGTGAGACCATGGCCGT+TGG | 0.615810 | 2_2:+39904409 | Msa0250820:exon |
| ATCTCTAAGGGGAAGAAAGG+TGG | 0.621403 | 2_2:+39904445 | Msa0250820:CDS |
| GTCTCGTACTCAGGGTACCA+AGG | 0.623684 | 2_2:+39904655 | Msa0250820:CDS |
| TGGCCGTTGGTAAGAACAAG+CGG | 0.624911 | 2_2:+39904422 | Msa0250820:CDS |
| CAGAGTTCTCACAGCAACAA+TGG | 0.627817 | 2_2:-39904372 | None:intergenic |
| GCCTGCTGATGAAATGGTGA+CGG | 0.629382 | 2_2:+39907063 | Msa0250820:CDS |
| AACTCTTGTTGAAGCCCACG+TGG | 0.629896 | 2_2:+39906057 | Msa0250820:CDS |
| GGATGAACACATTCTGCAAG+GGG | 0.631103 | 2_2:-39906541 | None:intergenic |
| CAAGGGGTAAATACTAGACG+TGG | 0.633754 | 2_2:-39906525 | None:intergenic |
| GCAAAGAACAAATATGCATG+AGG | 0.634864 | 2_2:-39907343 | None:intergenic |
| CTACTGATAATTACACATTG+AGG | 0.636083 | 2_2:+39906089 | Msa0250820:CDS |
| TTTGCATTGGCTTTACCAAG+AGG | 0.642280 | 2_2:+39906116 | Msa0250820:CDS |
| TACCCTGAGTACGAGACACG+AGG | 0.648373 | 2_2:-39904649 | None:intergenic |
| ATGTTGGCACAAAGGTAGAG+AGG | 0.654238 | 2_2:+39907041 | Msa0250820:CDS |
| CTGAAAATCAGATATGCATG+TGG | 0.659926 | 2_2:+39907218 | Msa0250820:three_prime_UTR |
| CAGTAGTCTTGACATCCACG+TGG | 0.679973 | 2_2:-39906072 | None:intergenic |
| ATTTCACAACTGACAAACTG+AGG | 0.681977 | 2_2:+39906014 | Msa0250820:CDS |
| TGCTGATGAAATGGTGACGG+AGG | 0.686062 | 2_2:+39907066 | Msa0250820:CDS |
| ACGCAAAACCAAAAGACTTG+GGG | 0.688719 | 2_2:-39907291 | None:intergenic |
| ACCCTGAGTACGAGACACGA+GGG | 0.700568 | 2_2:-39904648 | None:intergenic |
| AGAACAAGCGGATCTCTAAG+GGG | 0.721950 | 2_2:+39904434 | Msa0250820:CDS |
| AGTAGTCTTGACATCCACGT+GGG | 0.733750 | 2_2:-39906071 | None:intergenic |
| GGTTCATGGAGATTACTCTG+AGG | 0.741731 | 2_2:+39907018 | Msa0250820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATTAAAATTTTAAA+AGG | - | chr2_2:39906892-39906911 | None:intergenic | 0.0% |
| !!! | TTAGTATAAAAATTGTTTTA+TGG | - | chr2_2:39905235-39905254 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTTTTATTTAC+AGG | + | chr2_2:39905985-39906004 | Msa0250820:intron | 10.0% |
| !!! | TGATTTTTTTTTTATTTACA+GGG | + | chr2_2:39905986-39906005 | Msa0250820:intron | 10.0% |
| !! | GATATTATGAAAATAAATAT+TGG | - | chr2_2:39906664-39906683 | None:intergenic | 10.0% |
| !! | GTAAAAAATGAAAATTTGAA+TGG | - | chr2_2:39904508-39904527 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTTTTTTGTAATT+TGG | + | chr2_2:39904697-39904716 | Msa0250820:intron | 15.0% |
| !!! | GATTTTTTTTTTATTTACAG+GGG | + | chr2_2:39905987-39906006 | Msa0250820:intron | 15.0% |
| !!! | ATATATATCTGAATTTTGTT+TGG | + | chr2_2:39907191-39907210 | Msa0250820:three_prime_UTR | 15.0% |
| !!! | TTTGAATGGATTTTGAAAAA+GGG | - | chr2_2:39904494-39904513 | None:intergenic | 20.0% |
| !!! | ATTTGAATGGATTTTGAAAA+AGG | - | chr2_2:39904495-39904514 | None:intergenic | 20.0% |
| !! | ATATTCAATGAAAGTAAGAT+AGG | - | chr2_2:39904766-39904785 | None:intergenic | 20.0% |
| !! | AAAAAAATGTTGTCAAATAG+CGG | - | chr2_2:39905200-39905219 | None:intergenic | 20.0% |
| !!! | AAATTGTTTTATGGTACATT+AGG | - | chr2_2:39905226-39905245 | None:intergenic | 20.0% |
| !!! | TCTTGTCTTTTAAATAATGT+TGG | - | chr2_2:39905437-39905456 | None:intergenic | 20.0% |
| !! | CTTAATGCTTATTTAGAAAA+TGG | + | chr2_2:39905739-39905758 | Msa0250820:intron | 20.0% |
| !!! | AAAATCTTTTGACAAATTTC+TGG | + | chr2_2:39905893-39905912 | Msa0250820:CDS | 20.0% |
| !!! | AAATCTTTTGACAAATTTCT+GGG | + | chr2_2:39905894-39905913 | Msa0250820:CDS | 20.0% |
| !! | ATATATAAAGAAGAAATCAC+TGG | + | chr2_2:39906314-39906333 | Msa0250820:intron | 20.0% |
| !!! | CATATTAGTTTGTTCAAATT+CGG | + | chr2_2:39907381-39907400 | Msa0250820:three_prime_UTR | 20.0% |
| !!! | ATTCTTATTTTGCAATTTGA+CGG | - | chr2_2:39907427-39907446 | None:intergenic | 20.0% |
| !! | TTTCCTTGCATTTTCTATAA+TGG | + | chr2_2:39904531-39904550 | Msa0250820:intron | 25.0% |
| ! | AAACCATTATAGAAAATGCA+AGG | - | chr2_2:39904537-39904556 | None:intergenic | 25.0% |
| ! | AAAAACAAAAAACATGACAG+AGG | - | chr2_2:39904690-39904709 | None:intergenic | 25.0% |
| ! | ACTTTCATTGAATATCTATC+TGG | + | chr2_2:39904771-39904790 | Msa0250820:intron | 25.0% |
| ! | TTAAGCTATCTAAACAATCA+GGG | - | chr2_2:39904802-39904821 | None:intergenic | 25.0% |
| ! | ATTAAGCTATCTAAACAATC+AGG | - | chr2_2:39904803-39904822 | None:intergenic | 25.0% |
| !! | TAAGCTAAAAGTTTTTCCTA+TGG | + | chr2_2:39904916-39904935 | Msa0250820:intron | 25.0% |
| !! | AAGCTAAAAGTTTTTCCTAT+GGG | + | chr2_2:39904917-39904936 | Msa0250820:intron | 25.0% |
| ! | AAACATAAGTAACTAAGTGA+CGG | - | chr2_2:39905013-39905032 | None:intergenic | 25.0% |
| ! | GTTACTTATGTTTGTAGATA+CGG | + | chr2_2:39905020-39905039 | Msa0250820:intron | 25.0% |
| ! | AAAAAATGTTGTCAAATAGC+GGG | - | chr2_2:39905199-39905218 | None:intergenic | 25.0% |
| !! | TTATACTAAAAAGCATATCG+TGG | + | chr2_2:39905246-39905265 | Msa0250820:intron | 25.0% |
| !!! | TGATTGTTGTTTTATAAGTG+TGG | - | chr2_2:39905365-39905384 | None:intergenic | 25.0% |
| ! | GAGAATAAAAATGAAGACAT+GGG | - | chr2_2:39905540-39905559 | None:intergenic | 25.0% |
| !! | AAATATGTCTTAGTCTTTCA+TGG | + | chr2_2:39905681-39905700 | Msa0250820:intron | 25.0% |
| !! | AATATGTCTTAGTCTTTCAT+GGG | + | chr2_2:39905682-39905701 | Msa0250820:intron | 25.0% |
| ! | ATTATGACAAATAGATGGTT+CGG | - | chr2_2:39905932-39905951 | None:intergenic | 25.0% |
| ! | ACAACATTATGACAAATAGA+TGG | - | chr2_2:39905937-39905956 | None:intergenic | 25.0% |
| !! | TTTGTCATAATGTTGTTTGT+TGG | + | chr2_2:39905941-39905960 | Msa0250820:intron | 25.0% |
| ! | ATATATTAGTGTATCCAACA+CGG | + | chr2_2:39906243-39906262 | Msa0250820:intron | 25.0% |
| ! | AACAGCATTTCATAAAAGAA+AGG | - | chr2_2:39906294-39906313 | None:intergenic | 25.0% |
| !! | AATTTTCCAAGATCAAACTT+GGG | - | chr2_2:39906590-39906609 | None:intergenic | 25.0% |
| ! | TATCACCTGAATAAAAACTT+TGG | + | chr2_2:39906680-39906699 | Msa0250820:intron | 25.0% |
| !! | AACAACCAAAGTTTTTATTC+AGG | - | chr2_2:39906688-39906707 | None:intergenic | 25.0% |
| !! | AAAAACTTTGGTTGTTACTT+TGG | + | chr2_2:39906692-39906711 | Msa0250820:intron | 25.0% |
| !! | TTTGGAAAGTTTGAAGTAAT+TGG | - | chr2_2:39906760-39906779 | None:intergenic | 25.0% |
| ! | AATAATCTGAAGGTTGTTTA+TGG | - | chr2_2:39906802-39906821 | None:intergenic | 25.0% |
| ! | TTGAACTTGTAATAATCTGA+AGG | - | chr2_2:39906812-39906831 | None:intergenic | 25.0% |
| ! | ACTTATAACCATCTAAAAAG+TGG | + | chr2_2:39906960-39906979 | Msa0250820:intron | 25.0% |
| !!! | GGTTTGATTTTGTTTCTATT+TGG | + | chr2_2:39906987-39907006 | Msa0250820:intron | 25.0% |
| !!! | GTATATTTTTCAGCAATGAA+TGG | - | chr2_2:39907317-39907336 | None:intergenic | 25.0% |
| !! | AATGGATTTTGAAAAAGGGT+TGG | - | chr2_2:39904490-39904509 | None:intergenic | 30.0% |
| AATATCATACCAATCCTTCT+TGG | - | chr2_2:39904588-39904607 | None:intergenic | 30.0% | |
| ! | GAAGGATTGGTATGATATTA+AGG | + | chr2_2:39904589-39904608 | Msa0250820:CDS | 30.0% |
| GGTTTCATTTGTACATTGTT+AGG | + | chr2_2:39904718-39904737 | Msa0250820:intron | 30.0% | |
| TAAGCTGAAAAAACATCTCA+TGG | + | chr2_2:39904952-39904971 | Msa0250820:intron | 30.0% | |
| CGAGAATAAAAATGAAGACA+TGG | - | chr2_2:39905541-39905560 | None:intergenic | 30.0% | |
| ! | ATATGTCTTAGTCTTTCATG+GGG | + | chr2_2:39905683-39905702 | Msa0250820:intron | 30.0% |
| GTTGCTGAAATTTGATCAAT+TGG | + | chr2_2:39905705-39905724 | Msa0250820:intron | 30.0% | |
| CTACTGATAATTACACATTG+AGG | + | chr2_2:39906089-39906108 | Msa0250820:CDS | 30.0% | |
| !! | CTTTAAGGATCTTCACTTTT+CGG | - | chr2_2:39906565-39906584 | None:intergenic | 30.0% |
| ! | CAATTTTCCAAGATCAAACT+TGG | - | chr2_2:39906591-39906610 | None:intergenic | 30.0% |
| GTTTGATCTTGGAAAATTGA+TGG | + | chr2_2:39906592-39906611 | Msa0250820:CDS | 30.0% | |
| ! | GTTTTCACACAAGCATTTAT+TGG | - | chr2_2:39906853-39906872 | None:intergenic | 30.0% |
| TTATTTCCATCATAGCCCAT+AGG | - | chr2_2:39904935-39904954 | None:intergenic | 35.0% | |
| TCAAATATGCCAATCCAAAC+AGG | + | chr2_2:39905043-39905062 | Msa0250820:intron | 35.0% | |
| GTAGATCACATATCGCTATA+GGG | - | chr2_2:39905301-39905320 | None:intergenic | 35.0% | |
| AGATAGATATTTCGAGCAGA+GGG | - | chr2_2:39905323-39905342 | None:intergenic | 35.0% | |
| TAGATAGATATTTCGAGCAG+AGG | - | chr2_2:39905324-39905343 | None:intergenic | 35.0% | |
| TCGAAATATCTATCTAGCAC+TGG | + | chr2_2:39905328-39905347 | Msa0250820:intron | 35.0% | |
| CGAAATATCTATCTAGCACT+GGG | + | chr2_2:39905329-39905348 | Msa0250820:intron | 35.0% | |
| AATAATGTTGGTCATGCTTG+TGG | - | chr2_2:39905425-39905444 | None:intergenic | 35.0% | |
| GACAAGAAAAAAGACTGAAC+TGG | + | chr2_2:39905450-39905469 | Msa0250820:intron | 35.0% | |
| TGAACTGGCATTATCATGAT+GGG | + | chr2_2:39905465-39905484 | Msa0250820:intron | 35.0% | |
| !!! | TTTTCTAAAGTATCGACTCC+AGG | + | chr2_2:39905502-39905521 | Msa0250820:intron | 35.0% |
| !! | TTTCTAAAGTATCGACTCCA+GGG | + | chr2_2:39905503-39905522 | Msa0250820:intron | 35.0% |
| ATTCTCATGTAAGTGGAAAG+AGG | - | chr2_2:39905580-39905599 | None:intergenic | 35.0% | |
| TCTTTCCACTTACATGAGAA+TGG | + | chr2_2:39905579-39905598 | Msa0250820:intron | 35.0% | |
| AACTTCCATTCTCATGTAAG+TGG | - | chr2_2:39905587-39905606 | None:intergenic | 35.0% | |
| !!! | GCTATTTAACCCATTGGTTT+TGG | + | chr2_2:39905644-39905663 | Msa0250820:intron | 35.0% |
| TCCTTGTAACCAAAACCAAT+GGG | - | chr2_2:39905656-39905675 | None:intergenic | 35.0% | |
| TTCCTTGTAACCAAAACCAA+TGG | - | chr2_2:39905657-39905676 | None:intergenic | 35.0% | |
| ! | TAGAGTGTTTGAGGTTTCAT+TGG | + | chr2_2:39905801-39905820 | Msa0250820:CDS | 35.0% |
| ! | TTTCATTGGCTGATCTTCAA+GGG | + | chr2_2:39905815-39905834 | Msa0250820:CDS | 35.0% |
| ATTTCACAACTGACAAACTG+AGG | + | chr2_2:39906014-39906033 | Msa0250820:CDS | 35.0% | |
| ! | ACATTGAGGATGTTTTGCAT+TGG | + | chr2_2:39906103-39906122 | Msa0250820:CDS | 35.0% |
| ACAATCTAGTCAGATTAGAC+AGG | + | chr2_2:39906171-39906190 | Msa0250820:CDS | 35.0% | |
| !! | ATCCAACACATGTTTTAGGT+AGG | + | chr2_2:39906267-39906286 | Msa0250820:intron | 35.0% |
| !!! | AAATCACTGGTTTTGAACCT+AGG | + | chr2_2:39906327-39906346 | Msa0250820:intron | 35.0% |
| CTACGGATCTGAACAAATAA+AGG | - | chr2_2:39906404-39906423 | None:intergenic | 35.0% | |
| ! | CTTTATTTGTTCAGATCCGT+AGG | + | chr2_2:39906402-39906421 | Msa0250820:intron | 35.0% |
| ATCCTGTGATTTGAAGGAAT+TGG | + | chr2_2:39906457-39906476 | Msa0250820:CDS | 35.0% | |
| AAATTCATTCCCGAGATGAT+TGG | + | chr2_2:39906485-39906504 | Msa0250820:CDS | 35.0% | |
| AATTCATTCCCGAGATGATT+GGG | + | chr2_2:39906486-39906505 | Msa0250820:CDS | 35.0% | |
| TGATCTTGGAAAATTGATGG+AGG | + | chr2_2:39906595-39906614 | Msa0250820:CDS | 35.0% | |
| CTTTCCAAAAGCTCTCTATT+CGG | + | chr2_2:39906771-39906790 | Msa0250820:intron | 35.0% | |
| TCATGCTAAAAGAGAACAGA+AGG | - | chr2_2:39906917-39906936 | None:intergenic | 35.0% | |
| AACCATCTAAAAAGTGGCTT+TGG | + | chr2_2:39906966-39906985 | Msa0250820:intron | 35.0% | |
| !!! | AACCAAAGCCACTTTTTAGA+TGG | - | chr2_2:39906971-39906990 | None:intergenic | 35.0% |
| ! | TGTTTCTATTTGGTCCTTGT+AGG | + | chr2_2:39906997-39907016 | Msa0250820:intron | 35.0% |
| GAAATTGTTGGAGCTTGATT+TGG | + | chr2_2:39907097-39907116 | Msa0250820:exon | 35.0% | |
| CTGAAAATCAGATATGCATG+TGG | + | chr2_2:39907218-39907237 | Msa0250820:three_prime_UTR | 35.0% | |
| GCAAAGAACAAATATGCATG+AGG | - | chr2_2:39907346-39907365 | None:intergenic | 35.0% | |
| TAAGAACAAGCGGATCTCTA+AGG | + | chr2_2:39904432-39904451 | Msa0250820:CDS | 40.0% | |
| AAGAACAAGCGGATCTCTAA+GGG | + | chr2_2:39904433-39904452 | Msa0250820:CDS | 40.0% | |
| ATCCATTTGCCAAGAAGGAT+TGG | + | chr2_2:39904576-39904595 | Msa0250820:CDS | 40.0% | |
| TACCAATCCTTCTTGGCAAA+TGG | - | chr2_2:39904581-39904600 | None:intergenic | 40.0% | |
| TTCTTCACCTGGAAAACTGA+AGG | - | chr2_2:39904617-39904636 | None:intergenic | 40.0% | |
| ! | GTTTTCCAGGTGAAGAATGT+CGG | + | chr2_2:39904620-39904639 | Msa0250820:CDS | 40.0% |
| GACAGAGGAAAACAATACCT+TGG | - | chr2_2:39904675-39904694 | None:intergenic | 40.0% | |
| GCTATCTAAACAATCAGGGA+GGG | - | chr2_2:39904798-39904817 | None:intergenic | 40.0% | |
| AGCTATCTAAACAATCAGGG+AGG | - | chr2_2:39904799-39904818 | None:intergenic | 40.0% | |
| !! | GTTTTTCCTATGGGCTATGA+TGG | + | chr2_2:39904926-39904945 | Msa0250820:intron | 40.0% |
| CACTAAGTATACTCAGTCCA+AGG | - | chr2_2:39905070-39905089 | None:intergenic | 40.0% | |
| TCTTGTAGTGCAGAAAACAG+CGG | + | chr2_2:39905129-39905148 | Msa0250820:intron | 40.0% | |
| !! | TTGTCAAATAGCGGGTAAAG+TGG | - | chr2_2:39905191-39905210 | None:intergenic | 40.0% |
| GGTAGATCACATATCGCTAT+AGG | - | chr2_2:39905302-39905321 | None:intergenic | 40.0% | |
| CTGAACTGGCATTATCATGA+TGG | + | chr2_2:39905464-39905483 | Msa0250820:intron | 40.0% | |
| !! | TTCTAAAGTATCGACTCCAG+GGG | + | chr2_2:39905504-39905523 | Msa0250820:intron | 40.0% |
| !! | CAATGGGTTAAATAGCAGCT+AGG | - | chr2_2:39905640-39905659 | None:intergenic | 40.0% |
| ! | CTAGCTGCTATTTAACCCAT+TGG | + | chr2_2:39905638-39905657 | Msa0250820:intron | 40.0% |
| !!! | ACCCATTGGTTTTGGTTACA+AGG | + | chr2_2:39905652-39905671 | Msa0250820:intron | 40.0% |
| GAATGACAGATTGCTTCAGA+TGG | + | chr2_2:39905769-39905788 | Msa0250820:intron | 40.0% | |
| ! | ACTCAAGCATAGAGTGTTTG+AGG | + | chr2_2:39905792-39905811 | Msa0250820:CDS | 40.0% |
| ! | GTTTCATTGGCTGATCTTCA+AGG | + | chr2_2:39905814-39905833 | Msa0250820:CDS | 40.0% |
| ! | TTCATTGGCTGATCTTCAAG+GGG | + | chr2_2:39905816-39905835 | Msa0250820:CDS | 40.0% |
| ACCATGCATTCAGGAAGATT+AGG | + | chr2_2:39905845-39905864 | Msa0250820:CDS | 40.0% | |
| ACCTAATCTTCCTGAATGCA+TGG | - | chr2_2:39905849-39905868 | None:intergenic | 40.0% | |
| TTGAGAGCTGAAGATGTTCA+AGG | + | chr2_2:39905868-39905887 | Msa0250820:CDS | 40.0% | |
| TGAGAGCTGAAGATGTTCAA+GGG | + | chr2_2:39905869-39905888 | Msa0250820:CDS | 40.0% | |
| AACTGACAAACTGAGGTCAT+TGG | + | chr2_2:39906021-39906040 | Msa0250820:CDS | 40.0% | |
| !! | TTTGCATTGGCTTTACCAAG+AGG | + | chr2_2:39906116-39906135 | Msa0250820:CDS | 40.0% |
| CTGACTAGATTGTGCATAAC+AGG | - | chr2_2:39906164-39906183 | None:intergenic | 40.0% | |
| ! | CGGTATCCAACACATGTTTT+AGG | + | chr2_2:39906263-39906282 | Msa0250820:intron | 40.0% |
| GTCCTACCTAAAACATGTGT+TGG | - | chr2_2:39906272-39906291 | None:intergenic | 40.0% | |
| AGAAGACAAAGCATGATCCT+AGG | - | chr2_2:39906347-39906366 | None:intergenic | 40.0% | |
| TGATCTCAACCATCTTCCTA+CGG | - | chr2_2:39906421-39906440 | None:intergenic | 40.0% | |
| TCAAATCACAGGATGATGCT+TGG | - | chr2_2:39906451-39906470 | None:intergenic | 40.0% | |
| AGCATCATCCTGTGATTTGA+AGG | + | chr2_2:39906451-39906470 | Msa0250820:CDS | 40.0% | |
| GACCAATTCCTTCAAATCAC+AGG | - | chr2_2:39906462-39906481 | None:intergenic | 40.0% | |
| TCATCTCGGGAATGAATTTG+CGG | - | chr2_2:39906484-39906503 | None:intergenic | 40.0% | |
| AATCTCCTTCCCAATCATCT+CGG | - | chr2_2:39906498-39906517 | None:intergenic | 40.0% | |
| GATCAAACTTGGGAGCTTTA+AGG | - | chr2_2:39906580-39906599 | None:intergenic | 40.0% | |
| AAAGCTCCCAAGTTTGATCT+TGG | + | chr2_2:39906581-39906600 | Msa0250820:CDS | 40.0% | |
| !! | TTGGTTGTTACTTTGGTCAC+TGG | + | chr2_2:39906699-39906718 | Msa0250820:intron | 40.0% |
| ! | GAAACCGAATAGAGAGCTTT+TGG | - | chr2_2:39906778-39906797 | None:intergenic | 40.0% |
| ATTTGGTCCTTGTAGGTTCA+TGG | + | chr2_2:39907004-39907023 | Msa0250820:intron | 40.0% | |
| GTAATCTCCATGAACCTACA+AGG | - | chr2_2:39907014-39907033 | None:intergenic | 40.0% | |
| GAGGAACCTACTGAAATTGT+TGG | + | chr2_2:39907085-39907104 | Msa0250820:CDS | 40.0% | |
| CAAGCTCCAACAATTTCAGT+AGG | - | chr2_2:39907094-39907113 | None:intergenic | 40.0% | |
| ACGCAAAACCAAAAGACTTG+GGG | - | chr2_2:39907294-39907313 | None:intergenic | 40.0% | |
| GACGCAAAACCAAAAGACTT+GGG | - | chr2_2:39907295-39907314 | None:intergenic | 40.0% | |
| ! | GCAACAATGGCACCGTTTTA+GGG | - | chr2_2:39904362-39904381 | None:intergenic | 45.0% |
| ! | AGCAACAATGGCACCGTTTT+AGG | - | chr2_2:39904363-39904382 | None:intergenic | 45.0% |
| CAGAGTTCTCACAGCAACAA+TGG | - | chr2_2:39904375-39904394 | None:intergenic | 45.0% | |
| GATCCGCTTGTTCTTACCAA+CGG | - | chr2_2:39904428-39904447 | None:intergenic | 45.0% | |
| AGAACAAGCGGATCTCTAAG+GGG | + | chr2_2:39904434-39904453 | Msa0250820:CDS | 45.0% | |
| ! | ATCTCTAAGGGGAAGAAAGG+TGG | + | chr2_2:39904445-39904464 | Msa0250820:CDS | 45.0% |
| TGCTGATCCATTTGCCAAGA+AGG | + | chr2_2:39904571-39904590 | Msa0250820:CDS | 45.0% | |
| ! | TAAGGCTCCTTCAGTTTTCC+AGG | + | chr2_2:39904607-39904626 | Msa0250820:CDS | 45.0% |
| CTTGTAGTGCAGAAAACAGC+GGG | + | chr2_2:39905130-39905149 | Msa0250820:intron | 45.0% | |
| ! | AGTAGTCTTGACATCCACGT+GGG | - | chr2_2:39906074-39906093 | None:intergenic | 45.0% |
| ACATGTGTTGGATACCGTGT+TGG | - | chr2_2:39906260-39906279 | None:intergenic | 45.0% | |
| TGTTCAGATCCGTAGGAAGA+TGG | + | chr2_2:39906409-39906428 | Msa0250820:intron | 45.0% | |
| ATCTCCTTCCCAATCATCTC+GGG | - | chr2_2:39906497-39906516 | None:intergenic | 45.0% | |
| CAAGGGGTAAATACTAGACG+TGG | - | chr2_2:39906528-39906547 | None:intergenic | 45.0% | |
| GGATGAACACATTCTGCAAG+GGG | - | chr2_2:39906544-39906563 | None:intergenic | 45.0% | |
| CGGATGAACACATTCTGCAA+GGG | - | chr2_2:39906545-39906564 | None:intergenic | 45.0% | |
| TCGGATGAACACATTCTGCA+AGG | - | chr2_2:39906546-39906565 | None:intergenic | 45.0% | |
| GGTTCATGGAGATTACTCTG+AGG | + | chr2_2:39907018-39907037 | Msa0250820:intron | 45.0% | |
| ! | GGAGATTACTCTGAGGATGT+TGG | + | chr2_2:39907025-39907044 | Msa0250820:CDS | 45.0% |
| ATGTTGGCACAAAGGTAGAG+AGG | + | chr2_2:39907041-39907060 | Msa0250820:CDS | 45.0% | |
| ! | GTTTCTCACCCCAAGTCTTT+TGG | + | chr2_2:39907283-39907302 | Msa0250820:three_prime_UTR | 45.0% |
| GGACGCAAAACCAAAAGACT+TGG | - | chr2_2:39907296-39907315 | None:intergenic | 45.0% | |
| !! | ATATTATGAAAATAAATATT+GGG | - | chr2_2:39906663-39906682 | None:intergenic | 5.0% |
| GTCTCACTGTTTGCAGAGTG+CGG | - | chr2_2:39904400-39904419 | None:intergenic | 50.0% | |
| CTCTGCAAACAGTGAGACCA+TGG | + | chr2_2:39904402-39904421 | Msa0250820:exon | 50.0% | |
| CTTGTTCTTACCAACGGCCA+TGG | - | chr2_2:39904422-39904441 | None:intergenic | 50.0% | |
| ! | TGGCCGTTGGTAAGAACAAG+CGG | + | chr2_2:39904422-39904441 | Msa0250820:CDS | 50.0% |
| ! | CGGATCTCTAAGGGGAAGAA+AGG | + | chr2_2:39904442-39904461 | Msa0250820:CDS | 50.0% |
| TCTTGCCGACATTCTTCACC+TGG | - | chr2_2:39904628-39904647 | None:intergenic | 50.0% | |
| TGCCAATCCAAACAGGTCCT+TGG | + | chr2_2:39905050-39905069 | Msa0250820:intron | 50.0% | |
| GTCCAAGGACCTGTTTGGAT+TGG | - | chr2_2:39905055-39905074 | None:intergenic | 50.0% | |
| ACTCAGTCCAAGGACCTGTT+TGG | - | chr2_2:39905060-39905079 | None:intergenic | 50.0% | |
| TGTTGGTCATGCTTGTGGCA+GGG | - | chr2_2:39905420-39905439 | None:intergenic | 50.0% | |
| ATGTTGGTCATGCTTGTGGC+AGG | - | chr2_2:39905421-39905440 | None:intergenic | 50.0% | |
| TGAGGTCATTGGTGCGTAAG+TGG | + | chr2_2:39906032-39906051 | Msa0250820:CDS | 50.0% | |
| AACTCTTGTTGAAGCCCACG+TGG | + | chr2_2:39906057-39906076 | Msa0250820:CDS | 50.0% | |
| ! | CAGTAGTCTTGACATCCACG+TGG | - | chr2_2:39906075-39906094 | None:intergenic | 50.0% |
| TACCAAGAGGAGAGCTAACC+AGG | + | chr2_2:39906129-39906148 | Msa0250820:CDS | 50.0% | |
| CATAACAGGTCCTCTTCACC+TGG | - | chr2_2:39906150-39906169 | None:intergenic | 50.0% | |
| CATTCCCGAGATGATTGGGA+AGG | + | chr2_2:39906490-39906509 | Msa0250820:CDS | 50.0% | |
| ! | CTCTGAGGATGTTGGCACAA+AGG | + | chr2_2:39907033-39907052 | Msa0250820:CDS | 50.0% |
| AGAGAGGCCTGCTGATGAAA+TGG | + | chr2_2:39907057-39907076 | Msa0250820:CDS | 50.0% | |
| GCCTGCTGATGAAATGGTGA+CGG | + | chr2_2:39907063-39907082 | Msa0250820:CDS | 50.0% | |
| TCCGTCACCATTTCATCAGC+AGG | - | chr2_2:39907067-39907086 | None:intergenic | 50.0% | |
| !! | TGCTGATGAAATGGTGACGG+AGG | + | chr2_2:39907066-39907085 | Msa0250820:CDS | 50.0% |
| AACAGTGAGACCATGGCCGT+TGG | + | chr2_2:39904409-39904428 | Msa0250820:exon | 55.0% | |
| ACCCTCGTGTCTCGTACTCA+GGG | + | chr2_2:39904647-39904666 | Msa0250820:CDS | 55.0% | |
| ACCCTGAGTACGAGACACGA+GGG | - | chr2_2:39904651-39904670 | None:intergenic | 55.0% | |
| TACCCTGAGTACGAGACACG+AGG | - | chr2_2:39904652-39904671 | None:intergenic | 55.0% | |
| ! | GTCTCGTACTCAGGGTACCA+AGG | + | chr2_2:39904655-39904674 | Msa0250820:CDS | 55.0% |
| CATGGGAATGTCATGTCCCC+TGG | - | chr2_2:39905523-39905542 | None:intergenic | 55.0% | |
| GGGACGAAGACCATGCATTC+AGG | + | chr2_2:39905836-39905855 | Msa0250820:CDS | 55.0% | |
| ! | CACCTGGTTAGCTCTCCTCT+TGG | - | chr2_2:39906134-39906153 | None:intergenic | 55.0% |
| GGAGAGCTAACCAGGTGAAG+AGG | + | chr2_2:39906137-39906156 | Msa0250820:CDS | 55.0% | |
| GACCCTCGTGTCTCGTACTC+AGG | + | chr2_2:39904646-39904665 | Msa0250820:CDS | 60.0% | |
| CTTGTGGCAGGGCAGAAGTG+GGG | - | chr2_2:39905409-39905428 | None:intergenic | 60.0% | |
| GCTTGTGGCAGGGCAGAAGT+GGG | - | chr2_2:39905410-39905429 | None:intergenic | 60.0% | |
| TGCTTGTGGCAGGGCAGAAG+TGG | - | chr2_2:39905411-39905430 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 39904354 | 39907460 | 39904354 | ID=Msa0250820;Name=Msa0250820 |
| chr2_2 | mRNA | 39904354 | 39907460 | 39904354 | ID=Msa0250820-mRNA-1;Parent=Msa0250820;Name=Msa0250820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|1|1|1|1|1|6|346|261 |
| chr2_2 | exon | 39904354 | 39904479 | 39904354 | ID=Msa0250820-mRNA-1:exon:12328;Parent=Msa0250820-mRNA-1 |
| chr2_2 | exon | 39904571 | 39904676 | 39904571 | ID=Msa0250820-mRNA-1:exon:12329;Parent=Msa0250820-mRNA-1 |
| chr2_2 | exon | 39905778 | 39905915 | 39905778 | ID=Msa0250820-mRNA-1:exon:12330;Parent=Msa0250820-mRNA-1 |
| chr2_2 | exon | 39906007 | 39906192 | 39906007 | ID=Msa0250820-mRNA-1:exon:12331;Parent=Msa0250820-mRNA-1 |
| chr2_2 | exon | 39906416 | 39906616 | 39906416 | ID=Msa0250820-mRNA-1:exon:12332;Parent=Msa0250820-mRNA-1 |
| chr2_2 | exon | 39907019 | 39907460 | 39907019 | ID=Msa0250820-mRNA-1:exon:12333;Parent=Msa0250820-mRNA-1 |
| chr2_2 | five_prime_UTR | 39904354 | 39904420 | 39904354 | ID=Msa0250820-mRNA-1:five_prime_utr;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39904421 | 39904479 | 39904421 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39904571 | 39904676 | 39904571 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39905778 | 39905915 | 39905778 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39906007 | 39906192 | 39906007 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39906416 | 39906616 | 39906416 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | CDS | 39907019 | 39907114 | 39907019 | ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1 |
| chr2_2 | three_prime_UTR | 39907115 | 39907460 | 39907115 | ID=Msa0250820-mRNA-1:three_prime_utr;Parent=Msa0250820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
