AlfalfaGEDB | Msa0250820

M. sativa cultivar zhongmu-4 / Msa0250820

KEGG: K02984
GO: -
PFAM: PF01015.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250820	XP_013469779.1	97.701	261	6	0	1	261	1	261	0.0	530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250820	sp\|Q8GTE3\|RS3A_CICAR	92.720	261	19	0	1	261	1	261	4.49e-175	485

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250820	B7FLW8	97.701	261	6	0	1	261	1	261	0.0	530

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa0250820	0.896338	4.059619e-76	-8.615850e-47
Msa0002790	Msa0250820	0.857063	2.107000e-62	-8.615850e-47
Msa0003780	Msa0250820	0.870974	9.725220e-67	-8.615850e-47
Msa0032780	Msa0250820	0.826746	2.291120e-54	-8.615850e-47
Msa0044890	Msa0250820	0.841947	3.487937e-58	-8.615850e-47
Msa0049370	Msa0250820	0.807647	4.563432e-50	-8.615850e-47
Msa0068970	Msa0250820	0.838460	2.837984e-57	-8.615850e-47
Msa0074030	Msa0250820	0.830982	2.160225e-55	-8.615850e-47
Msa0085780	Msa0250820	0.818891	1.547019e-52	-8.615850e-47
Msa0086750	Msa0250820	0.860468	2.022507e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250820	MtrunA17_Chr1g0204941	97.701	261	6	1	261	1	261	0.0	530
Msa0250820	MtrunA17_Chr3g0081171	95.402	261	12	1	261	1	261	2.86e-180	495
Msa0250820	MtrunA17_Chr5g0394611	94.636	261	14	1	261	1	261	7.67e-179	492

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0250820	AT3G04840.1	85.115	262	38	1	1	261	1	262	1.75e-163	453
Msa0250820	AT4G34670.1	85.496	262	37	1	1	261	1	262	4.54e-163	452

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Find 90 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTCCCAAGTTTGATCT+TGG	0.357514	2_2:+39906581	Msa0250820:CDS
AAATTCATTCCCGAGATGAT+TGG	0.381702	2_2:+39906485	Msa0250820:CDS
AACAGTGAGACCATGGCCGT+TGG	0.615810	2_2:+39904409	Msa0250820:exon
AACTCTTGTTGAAGCCCACG+TGG	0.629896	2_2:+39906057	Msa0250820:CDS
AACTGACAAACTGAGGTCAT+TGG	0.506332	2_2:+39906021	Msa0250820:CDS
AAGAACAAGCGGATCTCTAA+GGG	0.521243	2_2:+39904433	Msa0250820:CDS
AATATCATACCAATCCTTCT+TGG	0.295389	2_2:-39904585	None:intergenic
AATCTCCTTCCCAATCATCT+CGG	0.535678	2_2:-39906495	None:intergenic
AATTCATTCCCGAGATGATT+GGG	0.437177	2_2:+39906486	Msa0250820:CDS
ACAATCTAGTCAGATTAGAC+AGG	0.580594	2_2:+39906171	Msa0250820:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCATACCAATCCTTCT+TGG	-	chr2_2:39904588-39904607	None:intergenic	30.0%
GGTTTCATTTGTACATTGTT+AGG	+	chr2_2:39904718-39904737	Msa0250820:intron	30.0%
TAAGCTGAAAAAACATCTCA+TGG	+	chr2_2:39904952-39904971	Msa0250820:intron	30.0%
CGAGAATAAAAATGAAGACA+TGG	-	chr2_2:39905541-39905560	None:intergenic	30.0%
GTTGCTGAAATTTGATCAAT+TGG	+	chr2_2:39905705-39905724	Msa0250820:intron	30.0%
CTACTGATAATTACACATTG+AGG	+	chr2_2:39906089-39906108	Msa0250820:CDS	30.0%
GTTTGATCTTGGAAAATTGA+TGG	+	chr2_2:39906592-39906611	Msa0250820:CDS	30.0%
TTATTTCCATCATAGCCCAT+AGG	-	chr2_2:39904935-39904954	None:intergenic	35.0%
TCAAATATGCCAATCCAAAC+AGG	+	chr2_2:39905043-39905062	Msa0250820:intron	35.0%
GTAGATCACATATCGCTATA+GGG	-	chr2_2:39905301-39905320	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	39904354	39907460	39904354	ID=Msa0250820;Name=Msa0250820
chr2_2	mRNA	39904354	39907460	39904354	ID=Msa0250820-mRNA-1;Parent=Msa0250820;Name=Msa0250820-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67\|1\|1\|1\|1\|1\|6\|346\|261
chr2_2	exon	39904354	39904479	39904354	ID=Msa0250820-mRNA-1:exon:12328;Parent=Msa0250820-mRNA-1
chr2_2	exon	39904571	39904676	39904571	ID=Msa0250820-mRNA-1:exon:12329;Parent=Msa0250820-mRNA-1
chr2_2	exon	39905778	39905915	39905778	ID=Msa0250820-mRNA-1:exon:12330;Parent=Msa0250820-mRNA-1
chr2_2	exon	39906007	39906192	39906007	ID=Msa0250820-mRNA-1:exon:12331;Parent=Msa0250820-mRNA-1
chr2_2	exon	39906416	39906616	39906416	ID=Msa0250820-mRNA-1:exon:12332;Parent=Msa0250820-mRNA-1
chr2_2	exon	39907019	39907460	39907019	ID=Msa0250820-mRNA-1:exon:12333;Parent=Msa0250820-mRNA-1
chr2_2	five_prime_UTR	39904354	39904420	39904354	ID=Msa0250820-mRNA-1:five_prime_utr;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39904421	39904479	39904421	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39904571	39904676	39904571	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39905778	39905915	39905778	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39906007	39906192	39906007	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39906416	39906616	39906416	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	CDS	39907019	39907114	39907019	ID=Msa0250820-mRNA-1:cds;Parent=Msa0250820-mRNA-1
chr2_2	three_prime_UTR	39907115	39907460	39907115	ID=Msa0250820-mRNA-1:three_prime_utr;Parent=Msa0250820-mRNA-1

Gene Sequence

>Msa0250820

ATGGCCGTTGGTAAGAACAAGCGGATCTCTAAGGGGAAGAAAGGTGGCAAGAAGAAAGCTGCTGATCCATTTGCCAAGAAGGATTGGTATGATATTAAGGCTCCTTCAGTTTTCCAGGTGAAGAATGTCGGCAAGACCCTCGTGTCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAGCATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGACGAAGACCATGCATTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAAAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACTGACAAACTGAGGTCATTGGTGCGTAAGTGGCAAACTCTTGTTGAAGCCCACGTGGATGTCAAGACTACTGATAATTACACATTGAGGATGTTTTGCATTGGCTTTACCAAGAGGAGAGCTAACCAGGTGAAGAGGACCTGTTATGCACAATCTAGTCAGATTAGACAGATCCGTAGGAAGATGGTTGAGATCATGATCAACCAAGCATCATCCTGTGATTTGAAGGAATTGGTCCGCAAATTCATTCCCGAGATGATTGGGAAGGAGATTGAGAAAGCCACGTCTAGTATTTACCCCTTGCAGAATGTGTTCATCCGAAAAGTGAAGATCCTTAAAGCTCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCATGGAGATTACTCTGAGGATGTTGGCACAAAGGTAGAGAGGCCTGCTGATGAAATGGTGACGGAGGAACCTACTGAAATTGTTGGAGCTTGA

Protein sequence

>Msa0250820

MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEDHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVRKWQTLVEAHVDVKTTDNYTLRMFCIGFTKRRANQVKRTCYAQSSQIRQIRRKMVEIMINQASSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKVERPADEMVTEEPTEIVGA*