AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1096450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1096450 MtrunA17_Chr7g0221761 82.353 51 9 0 1 51 1 51 5.04e-23 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTGCTTTAACGTAAT+TGG 0.106249 7_3:+20782719 None:intergenic
CATGATATTTGTAACTTCTT+TGG 0.215077 7_3:-20782496 Msa1096450:three_prime_UTR
ATGGAACCAGATATGGAAAT+AGG 0.262567 7_3:-20782854 Msa1096450:three_prime_UTR
TCTAATTCAAGTGTGGAATT+AGG 0.264997 7_3:-20786418 Msa1096450:CDS
GGATACCCTATTTCCATATC+TGG 0.279714 7_3:+20782848 None:intergenic
AAACGTTGAAATAACTTTAG+AGG 0.315691 7_3:+20786339 None:intergenic
TACGTTAAAGCAATTTGAAT+TGG 0.328292 7_3:-20782714 Msa1096450:three_prime_UTR
GAAGCACACCTGAAAGAAAA+AGG 0.337416 7_3:+20786439 None:intergenic
GGAGATAAAGAAAGTAATTC+AGG 0.354220 7_3:+20782740 None:intergenic
GTGGGACTTATTATTATTGT+TGG 0.379448 7_3:-20782624 Msa1096450:three_prime_UTR
CCAATCTTTAACATTATTTG+TGG 0.386735 7_3:+20782778 None:intergenic
CCACAAATAATGTTAAAGAT+TGG 0.389223 7_3:-20782778 Msa1096450:three_prime_UTR
GTGAAGCATGTAACACATAT+TGG 0.392648 7_3:-20782818 Msa1096450:three_prime_UTR
AACTATTATTGTTAATTTGA+GGG 0.395391 7_3:+20786541 None:intergenic
TGAGGAGATGGAACCAGATA+TGG 0.397227 7_3:-20782861 Msa1096450:three_prime_UTR
GTAACACATATTGGACTTGA+TGG 0.403212 7_3:-20782809 Msa1096450:three_prime_UTR
CCTGCAGCTACATTAGGCTT+TGG 0.406315 7_3:+20786183 None:intergenic
CAACTATTATTGTTAATTTG+AGG 0.414083 7_3:+20786540 None:intergenic
CAATGAGTGGTTGGTGAGCT+TGG 0.421221 7_3:+20782681 None:intergenic
CACAAATAATGTTAAAGATT+GGG 0.428541 7_3:-20782777 Msa1096450:three_prime_UTR
AGAAGAAATGAGAAATCATA+TGG 0.448869 7_3:-20786479 Msa1096450:exon
TGGAACCAGATATGGAAATA+GGG 0.449151 7_3:-20782853 Msa1096450:three_prime_UTR
TAAAGATTGGGACAATTTGA+AGG 0.461704 7_3:-20782765 Msa1096450:three_prime_UTR
TGTATGCCTGCAGCTACATT+AGG 0.488754 7_3:+20786177 None:intergenic
AAGAGTTATCAATGAGTGGT+TGG 0.512846 7_3:+20782672 None:intergenic
AATGAGTGGTTGGTGAGCTT+GGG 0.519534 7_3:+20782682 None:intergenic
ATTTGAAATATTTGTTTGCA+AGG 0.525428 7_3:-20786273 Msa1096450:CDS
TGTTTGCAAGGAAGACAAGA+AGG 0.535313 7_3:-20786261 Msa1096450:CDS
CCAAAGCCTAATGTAGCTGC+AGG 0.535602 7_3:-20786183 Msa1096450:exon
CAGGCATACAGAGATTGATC+AGG 0.545062 7_3:-20786164 Msa1096450:three_prime_UTR
AAAGCAATTTGAATTGGCCA+TGG 0.548884 7_3:-20782708 Msa1096450:three_prime_UTR
TAACACATATTGGACTTGAT+GGG 0.552869 7_3:-20782808 Msa1096450:three_prime_UTR
TTGGTGAGCTTGGGTAGCCA+TGG 0.554788 7_3:+20782691 None:intergenic
GGAGAAGAGTTATCAATGAG+TGG 0.571021 7_3:+20782668 None:intergenic
GTTACATGCTTCACATCCGT+TGG 0.572507 7_3:+20782827 None:intergenic
GATGATAATGATGATGATGA+TGG 0.588201 7_3:-20782569 Msa1096450:three_prime_UTR
TATTATTGTTAATTTGAGGG+AGG 0.623153 7_3:+20786544 None:intergenic
GTGTGCTTCTAATTCAAGTG+TGG 0.662982 7_3:-20786425 Msa1096450:CDS
TATGGAAATAGGGTATCCAA+CGG 0.670674 7_3:-20782843 Msa1096450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAAAATATATATTTTAT+CGG + chr7_3:20784799-20784818 None:intergenic 0.0%
!!! ATTTAAAATATATATTTTAT+CGG + chr7_3:20784799-20784818 None:intergenic 0.0%
!!! CAAATTAAATATTATGATTT+TGG + chr7_3:20784633-20784652 None:intergenic 10.0%
!!! AAAAATAAAAATGCTTTTAA+AGG - chr7_3:20785850-20785869 Msa1096450:intron 10.0%
!! TTATTCATATATTTGTATTA+TGG - chr7_3:20786008-20786027 Msa1096450:intron 10.0%
!!! AAGTATTTTTAATTACATTT+TGG + chr7_3:20786376-20786395 None:intergenic 10.0%
!!! CAAATTAAATATTATGATTT+TGG + chr7_3:20784633-20784652 None:intergenic 10.0%
!!! AAAAATAAAAATGCTTTTAA+AGG - chr7_3:20785850-20785869 Msa1096450:intron 10.0%
!! TTATTCATATATTTGTATTA+TGG - chr7_3:20786008-20786027 Msa1096450:intron 10.0%
!!! AAGTATTTTTAATTACATTT+TGG + chr7_3:20786376-20786395 None:intergenic 10.0%
!!! AACTATTATTGTTAATTTGA+GGG + chr7_3:20782482-20782501 None:intergenic 15.0%
!!! ATTTTTCTTTCTTTAGTTAT+TGG - chr7_3:20782716-20782735 Msa1096450:three_prime_UTR 15.0%
!!! TTCTTTACATTTTTTATTGT+TGG - chr7_3:20782938-20782957 Msa1096450:intron 15.0%
!!! TACTTAATTTGATTATATGT+CGG + chr7_3:20783019-20783038 None:intergenic 15.0%
!!! ATTAAATATTATGATTTTGG+TGG + chr7_3:20784630-20784649 None:intergenic 15.0%
!!! TTATTTTTTACAAATGAAGA+AGG - chr7_3:20785259-20785278 Msa1096450:intron 15.0%
!! ATACAAATATATGAATAAGT+GGG + chr7_3:20786006-20786025 None:intergenic 15.0%
!! AATACAAATATATGAATAAG+TGG + chr7_3:20786007-20786026 None:intergenic 15.0%
!! AATGTAATTAAAAATACTTG+TGG - chr7_3:20786377-20786396 Msa1096450:CDS 15.0%
!! ATGTAATTAAAAATACTTGT+GGG - chr7_3:20786378-20786397 Msa1096450:CDS 15.0%
!!! TATCATGAATTTTAATTGTA+TGG + chr7_3:20786511-20786530 None:intergenic 15.0%
!!! AACTATTATTGTTAATTTGA+GGG + chr7_3:20782482-20782501 None:intergenic 15.0%
!!! ATTTTTCTTTCTTTAGTTAT+TGG - chr7_3:20782716-20782735 Msa1096450:three_prime_UTR 15.0%
!!! TTCTTTACATTTTTTATTGT+TGG - chr7_3:20782938-20782957 Msa1096450:intron 15.0%
!!! TACTTAATTTGATTATATGT+CGG + chr7_3:20783019-20783038 None:intergenic 15.0%
!!! ATTAAATATTATGATTTTGG+TGG + chr7_3:20784630-20784649 None:intergenic 15.0%
!!! TTATTTTTTACAAATGAAGA+AGG - chr7_3:20785259-20785278 Msa1096450:intron 15.0%
!! ATACAAATATATGAATAAGT+GGG + chr7_3:20786006-20786025 None:intergenic 15.0%
!! AATACAAATATATGAATAAG+TGG + chr7_3:20786007-20786026 None:intergenic 15.0%
!! AATGTAATTAAAAATACTTG+TGG - chr7_3:20786377-20786396 Msa1096450:CDS 15.0%
!! ATGTAATTAAAAATACTTGT+GGG - chr7_3:20786378-20786397 Msa1096450:CDS 15.0%
!!! TATCATGAATTTTAATTGTA+TGG + chr7_3:20786511-20786530 None:intergenic 15.0%
!!! CAACTATTATTGTTAATTTG+AGG + chr7_3:20782483-20782502 None:intergenic 20.0%
!!! ATTTGAAATATTTGTTTGCA+AGG - chr7_3:20782747-20782766 Msa1096450:three_prime_UTR 20.0%
!!! AATTTGTTTTTGTTTGTACA+TGG - chr7_3:20782972-20782991 Msa1096450:intron 20.0%
!!! ACTTAATTTGATTATATGTC+GGG + chr7_3:20783018-20783037 None:intergenic 20.0%
!! TTTGATTAGCAATAATAGTT+TGG - chr7_3:20783124-20783143 Msa1096450:intron 20.0%
!!! AATAATAGTTTGGAACAATT+GGG - chr7_3:20783134-20783153 Msa1096450:intron 20.0%
!!! ACGCGAAATTTTTAAAATTT+AGG - chr7_3:20784315-20784334 Msa1096450:intron 20.0%
!!! TTAAAATTTAGGATACGATA+CGG - chr7_3:20784326-20784345 Msa1096450:intron 20.0%
!!! TCTATTTTCATTCATATGTT+AGG - chr7_3:20784517-20784536 Msa1096450:intron 20.0%
!!! TTTATACACTTCATTTTTGT+TGG - chr7_3:20784711-20784730 Msa1096450:intron 20.0%
!!! CATTGGTATACAATTTATTT+TGG - chr7_3:20785014-20785033 Msa1096450:intron 20.0%
!! AATAAGAAGTAAGAAAAACA+AGG + chr7_3:20785085-20785104 None:intergenic 20.0%
!!! TTGTTTTTCTTACTTCTTAT+TGG - chr7_3:20785084-20785103 Msa1096450:intron 20.0%
!! TAGCTAAGTTTATAACTTTA+TGG - chr7_3:20785415-20785434 Msa1096450:intron 20.0%
!! ATCAAAGTTTCAATACAATT+GGG + chr7_3:20785689-20785708 None:intergenic 20.0%
!! AATCAAAGTTTCAATACAAT+TGG + chr7_3:20785690-20785709 None:intergenic 20.0%
!!! TTTTCTCTCAAAAAACTTTA+GGG - chr7_3:20785734-20785753 Msa1096450:intron 20.0%
!!! ATCGTTTTAATTTTTTAGCT+CGG + chr7_3:20785764-20785783 None:intergenic 20.0%
!! CACAAATAATGTTAAAGATT+GGG - chr7_3:20786243-20786262 Msa1096450:CDS 20.0%
!!! GTTGATAATGATGTTTTTAT+AGG - chr7_3:20786473-20786492 Msa1096450:CDS 20.0%
!!! CAACTATTATTGTTAATTTG+AGG + chr7_3:20782483-20782502 None:intergenic 20.0%
!!! ATTTGAAATATTTGTTTGCA+AGG - chr7_3:20782747-20782766 Msa1096450:three_prime_UTR 20.0%
!!! AATTTGTTTTTGTTTGTACA+TGG - chr7_3:20782972-20782991 Msa1096450:intron 20.0%
!!! ACTTAATTTGATTATATGTC+GGG + chr7_3:20783018-20783037 None:intergenic 20.0%
!! TTTGATTAGCAATAATAGTT+TGG - chr7_3:20783124-20783143 Msa1096450:intron 20.0%
!!! AATAATAGTTTGGAACAATT+GGG - chr7_3:20783134-20783153 Msa1096450:intron 20.0%
!!! ACGCGAAATTTTTAAAATTT+AGG - chr7_3:20784315-20784334 Msa1096450:intron 20.0%
!!! TTAAAATTTAGGATACGATA+CGG - chr7_3:20784326-20784345 Msa1096450:intron 20.0%
!!! TCTATTTTCATTCATATGTT+AGG - chr7_3:20784517-20784536 Msa1096450:intron 20.0%
!!! TTTATACACTTCATTTTTGT+TGG - chr7_3:20784711-20784730 Msa1096450:intron 20.0%
!!! CATTGGTATACAATTTATTT+TGG - chr7_3:20785014-20785033 Msa1096450:intron 20.0%
!! AATAAGAAGTAAGAAAAACA+AGG + chr7_3:20785085-20785104 None:intergenic 20.0%
!!! TTGTTTTTCTTACTTCTTAT+TGG - chr7_3:20785084-20785103 Msa1096450:intron 20.0%
!! TAGCTAAGTTTATAACTTTA+TGG - chr7_3:20785415-20785434 Msa1096450:intron 20.0%
!! ATCAAAGTTTCAATACAATT+GGG + chr7_3:20785689-20785708 None:intergenic 20.0%
!! AATCAAAGTTTCAATACAAT+TGG + chr7_3:20785690-20785709 None:intergenic 20.0%
!!! TTTTCTCTCAAAAAACTTTA+GGG - chr7_3:20785734-20785753 Msa1096450:intron 20.0%
!!! ATCGTTTTAATTTTTTAGCT+CGG + chr7_3:20785764-20785783 None:intergenic 20.0%
!! CACAAATAATGTTAAAGATT+GGG - chr7_3:20786243-20786262 Msa1096450:CDS 20.0%
!!! GTTGATAATGATGTTTTTAT+AGG - chr7_3:20786473-20786492 Msa1096450:CDS 20.0%
! TATACACACCAACAAAAAAT+TGG - chr7_3:20782514-20782533 Msa1096450:three_prime_UTR 25.0%
! ATACACACCAACAAAAAATT+GGG - chr7_3:20782515-20782534 Msa1096450:three_prime_UTR 25.0%
!!! TTCTAAACCCAATTTTTTGT+TGG + chr7_3:20782525-20782544 None:intergenic 25.0%
! AGAAGAAATGAGAAATCATA+TGG - chr7_3:20782541-20782560 Msa1096450:three_prime_UTR 25.0%
! AAACGTTGAAATAACTTTAG+AGG + chr7_3:20782684-20782703 None:intergenic 25.0%
! CAACCAAAATCAAGAAAAAA+AGG - chr7_3:20782793-20782812 Msa1096450:three_prime_UTR 25.0%
!!! AGACCTTTTTTTCTTGATTT+TGG + chr7_3:20782799-20782818 None:intergenic 25.0%
!! CAATAATAGTTTGGAACAAT+TGG - chr7_3:20783133-20783152 Msa1096450:intron 25.0%
!! AGAGTAAACATTTTATAACG+TGG - chr7_3:20783905-20783924 Msa1096450:intron 25.0%
!!! TCTTTTAAAAAAAATTCCGC+TGG - chr7_3:20784101-20784120 Msa1096450:intron 25.0%
!!! CTTTTAAAAAAAATTCCGCT+GGG - chr7_3:20784102-20784121 Msa1096450:intron 25.0%
!!! TTTTAAAAAAAATTCCGCTG+GGG - chr7_3:20784103-20784122 Msa1096450:intron 25.0%
! ACGCTACAATTTATTTGAAA+TGG - chr7_3:20784177-20784196 Msa1096450:intron 25.0%
! AAAAAATGGGTCAATTAAAG+TGG + chr7_3:20784218-20784237 None:intergenic 25.0%
!!! TAATTGACCCATTTTTTAGT+AGG - chr7_3:20784221-20784240 Msa1096450:intron 25.0%
! GATACTTAAAAGATACTCAA+CGG + chr7_3:20784777-20784796 None:intergenic 25.0%
! ATAATTAATTCCGATACTTC+TGG - chr7_3:20784823-20784842 Msa1096450:intron 25.0%
! TAATTAATTCCGATACTTCT+GGG - chr7_3:20784824-20784843 Msa1096450:intron 25.0%
!! AGTTATGAAGGTAATTTTTG+GGG + chr7_3:20784992-20785011 None:intergenic 25.0%
!! CAGTTATGAAGGTAATTTTT+GGG + chr7_3:20784993-20785012 None:intergenic 25.0%
!! ACAGTTATGAAGGTAATTTT+TGG + chr7_3:20784994-20785013 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_3:20785097-20785116 Msa1096450:intron 25.0%
! AAAACAATGGAGAGAAAAAA+AGG - chr7_3:20785110-20785129 Msa1096450:intron 25.0%
!!! TTGTTAGATTTTTTCGAAGA+AGG - chr7_3:20785226-20785245 Msa1096450:intron 25.0%
!!! TGTTAGATTTTTTCGAAGAA+GGG - chr7_3:20785227-20785246 Msa1096450:intron 25.0%
! CTTCAAAATCCATATTATCA+AGG + chr7_3:20785457-20785476 None:intergenic 25.0%
! GGTATATGAAAATAAATAGC+GGG + chr7_3:20785668-20785687 None:intergenic 25.0%
! GGGTATATGAAAATAAATAG+CGG + chr7_3:20785669-20785688 None:intergenic 25.0%
!! CTTTTCTCTCAAAAAACTTT+AGG - chr7_3:20785733-20785752 Msa1096450:intron 25.0%
!!! TCGTTTTAATTTTTTAGCTC+GGG + chr7_3:20785763-20785782 None:intergenic 25.0%
! AATGGTAAAAAAAATCATCC+AGG + chr7_3:20785974-20785993 None:intergenic 25.0%
! ATAAGTGGGATTGAAATAAA+TGG + chr7_3:20785992-20786011 None:intergenic 25.0%
!! AGTTTACAAAAAGCATATTG+AGG - chr7_3:20786141-20786160 Msa1096450:three_prime_UTR 25.0%
! CCAATCTTTAACATTATTTG+TGG + chr7_3:20786245-20786264 None:intergenic 25.0%
! CCACAAATAATGTTAAAGAT+TGG - chr7_3:20786242-20786261 Msa1096450:CDS 25.0%
! TCAAATTGCTTTAACGTAAT+TGG + chr7_3:20786304-20786323 None:intergenic 25.0%
! TACGTTAAAGCAATTTGAAT+TGG - chr7_3:20786306-20786325 Msa1096450:CDS 25.0%
! CATGATATTTGTAACTTCTT+TGG - chr7_3:20786524-20786543 Msa1096450:five_prime_UTR 25.0%
! TATACACACCAACAAAAAAT+TGG - chr7_3:20782514-20782533 Msa1096450:three_prime_UTR 25.0%
! ATACACACCAACAAAAAATT+GGG - chr7_3:20782515-20782534 Msa1096450:three_prime_UTR 25.0%
!!! TTCTAAACCCAATTTTTTGT+TGG + chr7_3:20782525-20782544 None:intergenic 25.0%
! AGAAGAAATGAGAAATCATA+TGG - chr7_3:20782541-20782560 Msa1096450:three_prime_UTR 25.0%
! AAACGTTGAAATAACTTTAG+AGG + chr7_3:20782684-20782703 None:intergenic 25.0%
! CAACCAAAATCAAGAAAAAA+AGG - chr7_3:20782793-20782812 Msa1096450:three_prime_UTR 25.0%
!!! AGACCTTTTTTTCTTGATTT+TGG + chr7_3:20782799-20782818 None:intergenic 25.0%
!! CAATAATAGTTTGGAACAAT+TGG - chr7_3:20783133-20783152 Msa1096450:intron 25.0%
!! AGAGTAAACATTTTATAACG+TGG - chr7_3:20783905-20783924 Msa1096450:intron 25.0%
!!! TCTTTTAAAAAAAATTCCGC+TGG - chr7_3:20784101-20784120 Msa1096450:intron 25.0%
!!! CTTTTAAAAAAAATTCCGCT+GGG - chr7_3:20784102-20784121 Msa1096450:intron 25.0%
!!! TTTTAAAAAAAATTCCGCTG+GGG - chr7_3:20784103-20784122 Msa1096450:intron 25.0%
! ACGCTACAATTTATTTGAAA+TGG - chr7_3:20784177-20784196 Msa1096450:intron 25.0%
! AAAAAATGGGTCAATTAAAG+TGG + chr7_3:20784218-20784237 None:intergenic 25.0%
!!! TAATTGACCCATTTTTTAGT+AGG - chr7_3:20784221-20784240 Msa1096450:intron 25.0%
! GATACTTAAAAGATACTCAA+CGG + chr7_3:20784777-20784796 None:intergenic 25.0%
! ATAATTAATTCCGATACTTC+TGG - chr7_3:20784823-20784842 Msa1096450:intron 25.0%
! TAATTAATTCCGATACTTCT+GGG - chr7_3:20784824-20784843 Msa1096450:intron 25.0%
!! AGTTATGAAGGTAATTTTTG+GGG + chr7_3:20784992-20785011 None:intergenic 25.0%
!! CAGTTATGAAGGTAATTTTT+GGG + chr7_3:20784993-20785012 None:intergenic 25.0%
!! ACAGTTATGAAGGTAATTTT+TGG + chr7_3:20784994-20785013 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_3:20785097-20785116 Msa1096450:intron 25.0%
! AAAACAATGGAGAGAAAAAA+AGG - chr7_3:20785110-20785129 Msa1096450:intron 25.0%
!!! TTGTTAGATTTTTTCGAAGA+AGG - chr7_3:20785226-20785245 Msa1096450:intron 25.0%
!!! TGTTAGATTTTTTCGAAGAA+GGG - chr7_3:20785227-20785246 Msa1096450:intron 25.0%
! CTTCAAAATCCATATTATCA+AGG + chr7_3:20785457-20785476 None:intergenic 25.0%
! GGTATATGAAAATAAATAGC+GGG + chr7_3:20785668-20785687 None:intergenic 25.0%
! GGGTATATGAAAATAAATAG+CGG + chr7_3:20785669-20785688 None:intergenic 25.0%
!! CTTTTCTCTCAAAAAACTTT+AGG - chr7_3:20785733-20785752 Msa1096450:intron 25.0%
!!! TCGTTTTAATTTTTTAGCTC+GGG + chr7_3:20785763-20785782 None:intergenic 25.0%
! AATGGTAAAAAAAATCATCC+AGG + chr7_3:20785974-20785993 None:intergenic 25.0%
! ATAAGTGGGATTGAAATAAA+TGG + chr7_3:20785992-20786011 None:intergenic 25.0%
!! AGTTTACAAAAAGCATATTG+AGG - chr7_3:20786141-20786160 Msa1096450:three_prime_UTR 25.0%
! CCAATCTTTAACATTATTTG+TGG + chr7_3:20786245-20786264 None:intergenic 25.0%
! CCACAAATAATGTTAAAGAT+TGG - chr7_3:20786242-20786261 Msa1096450:CDS 25.0%
! TCAAATTGCTTTAACGTAAT+TGG + chr7_3:20786304-20786323 None:intergenic 25.0%
! TACGTTAAAGCAATTTGAAT+TGG - chr7_3:20786306-20786325 Msa1096450:CDS 25.0%
! CATGATATTTGTAACTTCTT+TGG - chr7_3:20786524-20786543 Msa1096450:five_prime_UTR 25.0%
! TAGTTCTTCCTTTTTCTTTC+AGG - chr7_3:20782573-20782592 Msa1096450:three_prime_UTR 30.0%
TCTAATTCAAGTGTGGAATT+AGG - chr7_3:20782602-20782621 Msa1096450:three_prime_UTR 30.0%
ATCAAGAAAAAAAGGTCTTC+TGG - chr7_3:20782801-20782820 Msa1096450:three_prime_UTR 30.0%
AGTAGCCAAAGAGTTAATAA+GGG - chr7_3:20783710-20783729 Msa1096450:intron 30.0%
CTTATCCCTTATTAACTCTT+TGG + chr7_3:20783718-20783737 None:intergenic 30.0%
!!! GTTTTTTTTTCAACTGTCGT+CGG - chr7_3:20783980-20783999 Msa1096450:intron 30.0%
CTCATCTCCTACTAAAAAAT+GGG + chr7_3:20784231-20784250 None:intergenic 30.0%
ACTCATCTCCTACTAAAAAA+TGG + chr7_3:20784232-20784251 None:intergenic 30.0%
ATTACCTTCATAACTGTCAT+TGG - chr7_3:20784997-20785016 Msa1096450:intron 30.0%
TATACCAATGACAGTTATGA+AGG + chr7_3:20785004-20785023 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr7_3:20785059-20785078 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr7_3:20785182-20785201 None:intergenic 30.0%
!! AGGCATAATTTGTTAGAAGT+CGG - chr7_3:20785279-20785298 Msa1096450:intron 30.0%
TATTATCAAGGTGCATATCA+CGG + chr7_3:20785445-20785464 None:intergenic 30.0%
! TGATATGCACCTTGATAATA+TGG - chr7_3:20785445-20785464 Msa1096450:intron 30.0%
TAACACATATTGGACTTGAT+GGG - chr7_3:20786212-20786231 Msa1096450:CDS 30.0%
TAAAGATTGGGACAATTTGA+AGG - chr7_3:20786255-20786274 Msa1096450:CDS 30.0%
GGAGATAAAGAAAGTAATTC+AGG + chr7_3:20786283-20786302 None:intergenic 30.0%
GTGGGACTTATTATTATTGT+TGG - chr7_3:20786396-20786415 Msa1096450:CDS 30.0%
! GATGATAATGATGATGATGA+TGG - chr7_3:20786451-20786470 Msa1096450:CDS 30.0%
! TAGTTCTTCCTTTTTCTTTC+AGG - chr7_3:20782573-20782592 Msa1096450:three_prime_UTR 30.0%
TCTAATTCAAGTGTGGAATT+AGG - chr7_3:20782602-20782621 Msa1096450:three_prime_UTR 30.0%
ATCAAGAAAAAAAGGTCTTC+TGG - chr7_3:20782801-20782820 Msa1096450:three_prime_UTR 30.0%
AGTAGCCAAAGAGTTAATAA+GGG - chr7_3:20783710-20783729 Msa1096450:intron 30.0%
CTTATCCCTTATTAACTCTT+TGG + chr7_3:20783718-20783737 None:intergenic 30.0%
!!! GTTTTTTTTTCAACTGTCGT+CGG - chr7_3:20783980-20783999 Msa1096450:intron 30.0%
CTCATCTCCTACTAAAAAAT+GGG + chr7_3:20784231-20784250 None:intergenic 30.0%
ACTCATCTCCTACTAAAAAA+TGG + chr7_3:20784232-20784251 None:intergenic 30.0%
ATTACCTTCATAACTGTCAT+TGG - chr7_3:20784997-20785016 Msa1096450:intron 30.0%
TATACCAATGACAGTTATGA+AGG + chr7_3:20785004-20785023 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + chr7_3:20785059-20785078 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr7_3:20785182-20785201 None:intergenic 30.0%
!! AGGCATAATTTGTTAGAAGT+CGG - chr7_3:20785279-20785298 Msa1096450:intron 30.0%
TATTATCAAGGTGCATATCA+CGG + chr7_3:20785445-20785464 None:intergenic 30.0%
! TGATATGCACCTTGATAATA+TGG - chr7_3:20785445-20785464 Msa1096450:intron 30.0%
TAACACATATTGGACTTGAT+GGG - chr7_3:20786212-20786231 Msa1096450:CDS 30.0%
TAAAGATTGGGACAATTTGA+AGG - chr7_3:20786255-20786274 Msa1096450:CDS 30.0%
GGAGATAAAGAAAGTAATTC+AGG + chr7_3:20786283-20786302 None:intergenic 30.0%
GTGGGACTTATTATTATTGT+TGG - chr7_3:20786396-20786415 Msa1096450:CDS 30.0%
! GATGATAATGATGATGATGA+TGG - chr7_3:20786451-20786470 Msa1096450:CDS 30.0%
TGGGCATATCAATGAACAAA+TGG - chr7_3:20783153-20783172 Msa1096450:intron 35.0%
! ACTCGTTGGTTGAGTTTATT+AGG + chr7_3:20783225-20783244 None:intergenic 35.0%
AACCAACGAGTTTGTGAAAA+AGG - chr7_3:20783234-20783253 Msa1096450:intron 35.0%
TGTAGAGATGAATCTGAACT+TGG + chr7_3:20783295-20783314 None:intergenic 35.0%
TTCAACCATCTGATAGCAAA+CGG - chr7_3:20783385-20783404 Msa1096450:intron 35.0%
ATGTGTATTAGAGACGATGA+AGG + chr7_3:20783484-20783503 None:intergenic 35.0%
CACTTCTAACTCTCTATGTT+CGG - chr7_3:20783553-20783572 Msa1096450:intron 35.0%
GTTAGAATCTACTCTTGAGT+TGG + chr7_3:20783648-20783667 None:intergenic 35.0%
ACTATAACAATATGCGAGAG+GGG + chr7_3:20783670-20783689 None:intergenic 35.0%
CACTATAACAATATGCGAGA+GGG + chr7_3:20783671-20783690 None:intergenic 35.0%
ACACTATAACAATATGCGAG+AGG + chr7_3:20783672-20783691 None:intergenic 35.0%
GAGTAGCCAAAGAGTTAATA+AGG - chr7_3:20783709-20783728 Msa1096450:intron 35.0%
AACGACGATTAACTGTCATT+GGG - chr7_3:20784074-20784093 Msa1096450:intron 35.0%
TTATCATAACCTATGAAGCC+CGG + chr7_3:20784927-20784946 None:intergenic 35.0%
AGAGAAAAAAAGGAAGAGAG+AGG - chr7_3:20785120-20785139 Msa1096450:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr7_3:20785177-20785196 Msa1096450:intron 35.0%
ATTATCAAGGTGCATATCAC+GGG + chr7_3:20785444-20785463 None:intergenic 35.0%
CACAAAAGATGCTCTTTACT+CGG - chr7_3:20785490-20785509 Msa1096450:intron 35.0%
AAAAAAATAATGCACGTGCC+TGG - chr7_3:20785953-20785972 Msa1096450:intron 35.0%
! CAAAAAGCATATTGAGGAGA+TGG - chr7_3:20786147-20786166 Msa1096450:three_prime_UTR 35.0%
ATGGAACCAGATATGGAAAT+AGG - chr7_3:20786166-20786185 Msa1096450:three_prime_UTR 35.0%
TGGAACCAGATATGGAAATA+GGG - chr7_3:20786167-20786186 Msa1096450:three_prime_UTR 35.0%
! TATGGAAATAGGGTATCCAA+CGG - chr7_3:20786177-20786196 Msa1096450:exon 35.0%
GTGAAGCATGTAACACATAT+TGG - chr7_3:20786202-20786221 Msa1096450:CDS 35.0%
GTAACACATATTGGACTTGA+TGG - chr7_3:20786211-20786230 Msa1096450:CDS 35.0%
AAAGCAATTTGAATTGGCCA+TGG - chr7_3:20786312-20786331 Msa1096450:CDS 35.0%
AAGAGTTATCAATGAGTGGT+TGG + chr7_3:20786351-20786370 None:intergenic 35.0%
TGGGCATATCAATGAACAAA+TGG - chr7_3:20783153-20783172 Msa1096450:intron 35.0%
! ACTCGTTGGTTGAGTTTATT+AGG + chr7_3:20783225-20783244 None:intergenic 35.0%
AACCAACGAGTTTGTGAAAA+AGG - chr7_3:20783234-20783253 Msa1096450:intron 35.0%
TGTAGAGATGAATCTGAACT+TGG + chr7_3:20783295-20783314 None:intergenic 35.0%
TTCAACCATCTGATAGCAAA+CGG - chr7_3:20783385-20783404 Msa1096450:intron 35.0%
ATGTGTATTAGAGACGATGA+AGG + chr7_3:20783484-20783503 None:intergenic 35.0%
CACTTCTAACTCTCTATGTT+CGG - chr7_3:20783553-20783572 Msa1096450:intron 35.0%
GTTAGAATCTACTCTTGAGT+TGG + chr7_3:20783648-20783667 None:intergenic 35.0%
ACTATAACAATATGCGAGAG+GGG + chr7_3:20783670-20783689 None:intergenic 35.0%
CACTATAACAATATGCGAGA+GGG + chr7_3:20783671-20783690 None:intergenic 35.0%
ACACTATAACAATATGCGAG+AGG + chr7_3:20783672-20783691 None:intergenic 35.0%
GAGTAGCCAAAGAGTTAATA+AGG - chr7_3:20783709-20783728 Msa1096450:intron 35.0%
AACGACGATTAACTGTCATT+GGG - chr7_3:20784074-20784093 Msa1096450:intron 35.0%
TTATCATAACCTATGAAGCC+CGG + chr7_3:20784927-20784946 None:intergenic 35.0%
AGAGAAAAAAAGGAAGAGAG+AGG - chr7_3:20785120-20785139 Msa1096450:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr7_3:20785177-20785196 Msa1096450:intron 35.0%
ATTATCAAGGTGCATATCAC+GGG + chr7_3:20785444-20785463 None:intergenic 35.0%
CACAAAAGATGCTCTTTACT+CGG - chr7_3:20785490-20785509 Msa1096450:intron 35.0%
AAAAAAATAATGCACGTGCC+TGG - chr7_3:20785953-20785972 Msa1096450:intron 35.0%
! CAAAAAGCATATTGAGGAGA+TGG - chr7_3:20786147-20786166 Msa1096450:three_prime_UTR 35.0%
ATGGAACCAGATATGGAAAT+AGG - chr7_3:20786166-20786185 Msa1096450:three_prime_UTR 35.0%
TGGAACCAGATATGGAAATA+GGG - chr7_3:20786167-20786186 Msa1096450:three_prime_UTR 35.0%
! TATGGAAATAGGGTATCCAA+CGG - chr7_3:20786177-20786196 Msa1096450:exon 35.0%
GTGAAGCATGTAACACATAT+TGG - chr7_3:20786202-20786221 Msa1096450:CDS 35.0%
GTAACACATATTGGACTTGA+TGG - chr7_3:20786211-20786230 Msa1096450:CDS 35.0%
AAAGCAATTTGAATTGGCCA+TGG - chr7_3:20786312-20786331 Msa1096450:CDS 35.0%
AAGAGTTATCAATGAGTGGT+TGG + chr7_3:20786351-20786370 None:intergenic 35.0%
GAAGCACACCTGAAAGAAAA+AGG + chr7_3:20782584-20782603 None:intergenic 40.0%
GTGTGCTTCTAATTCAAGTG+TGG - chr7_3:20782595-20782614 Msa1096450:three_prime_UTR 40.0%
TGTTTGCAAGGAAGACAAGA+AGG - chr7_3:20782759-20782778 Msa1096450:three_prime_UTR 40.0%
!! GTCCTTTTTCACAAACTCGT+TGG + chr7_3:20783239-20783258 None:intergenic 40.0%
!! GTTTGCTATCAGATGGTTGA+AGG + chr7_3:20783386-20783405 None:intergenic 40.0%
!! TCCTTCATCAGCTTTTAGGA+TGG - chr7_3:20783423-20783442 Msa1096450:intron 40.0%
!!! CCTTCATCAGCTTTTAGGAT+GGG - chr7_3:20783424-20783443 Msa1096450:intron 40.0%
ATATTGATGCAGCTTTCTCC+TGG + chr7_3:20783531-20783550 None:intergenic 40.0%
GTGTTTAACAGCACTGTCAA+TGG - chr7_3:20784044-20784063 Msa1096450:intron 40.0%
GAACGACGATTAACTGTCAT+TGG - chr7_3:20784073-20784092 Msa1096450:intron 40.0%
TTGAAATGGATCGAGTCCAA+TGG - chr7_3:20784191-20784210 Msa1096450:intron 40.0%
TGAAATGGATCGAGTCCAAT+GGG - chr7_3:20784192-20784211 Msa1096450:intron 40.0%
GAGTTATGATCTATGAAGCC+CGG - chr7_3:20784248-20784267 Msa1096450:intron 40.0%
TGGATGAAAGTAACGAGAGA+GGG + chr7_3:20784610-20784629 None:intergenic 40.0%
!! ATTCCGATACTTCTGGGATA+CGG - chr7_3:20784830-20784849 Msa1096450:intron 40.0%
! ATACCGTATCCCAGAAGTAT+CGG + chr7_3:20784836-20784855 None:intergenic 40.0%
TATCCAATACGTATCCGACA+CGG - chr7_3:20784879-20784898 Msa1096450:intron 40.0%
GTAATACTATCACTGCTTCC+CGG - chr7_3:20785537-20785556 Msa1096450:intron 40.0%
TGGTGTTTCATACTCTTGCA+GGG - chr7_3:20785621-20785640 Msa1096450:intron 40.0%
GGATACCCTATTTCCATATC+TGG + chr7_3:20786175-20786194 None:intergenic 40.0%
GGAGAAGAGTTATCAATGAG+TGG + chr7_3:20786355-20786374 None:intergenic 40.0%
GAAGCACACCTGAAAGAAAA+AGG + chr7_3:20782584-20782603 None:intergenic 40.0%
GTGTGCTTCTAATTCAAGTG+TGG - chr7_3:20782595-20782614 Msa1096450:three_prime_UTR 40.0%
TGTTTGCAAGGAAGACAAGA+AGG - chr7_3:20782759-20782778 Msa1096450:three_prime_UTR 40.0%
!! GTCCTTTTTCACAAACTCGT+TGG + chr7_3:20783239-20783258 None:intergenic 40.0%
!! GTTTGCTATCAGATGGTTGA+AGG + chr7_3:20783386-20783405 None:intergenic 40.0%
!! TCCTTCATCAGCTTTTAGGA+TGG - chr7_3:20783423-20783442 Msa1096450:intron 40.0%
!!! CCTTCATCAGCTTTTAGGAT+GGG - chr7_3:20783424-20783443 Msa1096450:intron 40.0%
ATATTGATGCAGCTTTCTCC+TGG + chr7_3:20783531-20783550 None:intergenic 40.0%
GTGTTTAACAGCACTGTCAA+TGG - chr7_3:20784044-20784063 Msa1096450:intron 40.0%
GAACGACGATTAACTGTCAT+TGG - chr7_3:20784073-20784092 Msa1096450:intron 40.0%
TTGAAATGGATCGAGTCCAA+TGG - chr7_3:20784191-20784210 Msa1096450:intron 40.0%
TGAAATGGATCGAGTCCAAT+GGG - chr7_3:20784192-20784211 Msa1096450:intron 40.0%
GAGTTATGATCTATGAAGCC+CGG - chr7_3:20784248-20784267 Msa1096450:intron 40.0%
TGGATGAAAGTAACGAGAGA+GGG + chr7_3:20784610-20784629 None:intergenic 40.0%
!! ATTCCGATACTTCTGGGATA+CGG - chr7_3:20784830-20784849 Msa1096450:intron 40.0%
! ATACCGTATCCCAGAAGTAT+CGG + chr7_3:20784836-20784855 None:intergenic 40.0%
TATCCAATACGTATCCGACA+CGG - chr7_3:20784879-20784898 Msa1096450:intron 40.0%
GTAATACTATCACTGCTTCC+CGG - chr7_3:20785537-20785556 Msa1096450:intron 40.0%
TGGTGTTTCATACTCTTGCA+GGG - chr7_3:20785621-20785640 Msa1096450:intron 40.0%
GGATACCCTATTTCCATATC+TGG + chr7_3:20786175-20786194 None:intergenic 40.0%
GGAGAAGAGTTATCAATGAG+TGG + chr7_3:20786355-20786374 None:intergenic 40.0%
TGTATGCCTGCAGCTACATT+AGG + chr7_3:20782846-20782865 None:intergenic 45.0%
CAGGCATACAGAGATTGATC+AGG - chr7_3:20782856-20782875 Msa1096450:three_prime_UTR 45.0%
! AGATGCTCATAGCCTTGCTA+GGG + chr7_3:20783201-20783220 None:intergenic 45.0%
! AAGATGCTCATAGCCTTGCT+AGG + chr7_3:20783202-20783221 None:intergenic 45.0%
ACCATCTGATAGCAAACGGT+AGG - chr7_3:20783389-20783408 Msa1096450:intron 45.0%
CCTAAAAGCTGATGAAGGAG+AGG + chr7_3:20783422-20783441 None:intergenic 45.0%
! CCTCTCCTTCATCAGCTTTT+AGG - chr7_3:20783419-20783438 Msa1096450:intron 45.0%
CCCATCCTAAAAGCTGATGA+AGG + chr7_3:20783427-20783446 None:intergenic 45.0%
TCAAGTAGTAGAGTGGGGAT+TGG + chr7_3:20783508-20783527 None:intergenic 45.0%
TCCTGGTCAAGTAGTAGAGT+GGG + chr7_3:20783514-20783533 None:intergenic 45.0%
!! GATGTGTTGCCGCTTTATTG+CGG - chr7_3:20783605-20783624 Msa1096450:intron 45.0%
GCAAACATGCCGCAATAAAG+CGG + chr7_3:20783617-20783636 None:intergenic 45.0%
AATTCCGCTGGGGTATGTTT+AGG - chr7_3:20784113-20784132 Msa1096450:intron 45.0%
TTCTCCTAAACATACCCCAG+CGG + chr7_3:20784120-20784139 None:intergenic 45.0%
GGTCAATTAAAGTGGCCCAT+TGG + chr7_3:20784210-20784229 None:intergenic 45.0%
GGATGAAAGTAACGAGAGAG+GGG + chr7_3:20784609-20784628 None:intergenic 45.0%
GTGGATGAAAGTAACGAGAG+AGG + chr7_3:20784611-20784630 None:intergenic 45.0%
!! TACTTCTGGGATACGGTATC+CGG - chr7_3:20784837-20784856 Msa1096450:intron 45.0%
TATTGGATACCGATACTCCG+CGG + chr7_3:20784868-20784887 None:intergenic 45.0%
ATCCAATACGTATCCGACAC+GGG - chr7_3:20784880-20784899 Msa1096450:intron 45.0%
AAGATGCTCTTTACTCGGTC+CGG - chr7_3:20785495-20785514 Msa1096450:intron 45.0%
CGACTTCAGTTATGTCTTCC+CGG + chr7_3:20785517-20785536 None:intergenic 45.0%
CGGGAAGACATAACTGAAGT+CGG - chr7_3:20785515-20785534 Msa1096450:intron 45.0%
GTGGTGTTTCATACTCTTGC+AGG - chr7_3:20785620-20785639 Msa1096450:intron 45.0%
GGTGTTTCATACTCTTGCAG+GGG - chr7_3:20785622-20785641 Msa1096450:intron 45.0%
AGCGGGACTAACAAGAAATG+TGG + chr7_3:20785651-20785670 None:intergenic 45.0%
TGAGGAGATGGAACCAGATA+TGG - chr7_3:20786159-20786178 Msa1096450:three_prime_UTR 45.0%
GTTACATGCTTCACATCCGT+TGG + chr7_3:20786196-20786215 None:intergenic 45.0%
!! AATGAGTGGTTGGTGAGCTT+GGG + chr7_3:20786341-20786360 None:intergenic 45.0%
TGTATGCCTGCAGCTACATT+AGG + chr7_3:20782846-20782865 None:intergenic 45.0%
CAGGCATACAGAGATTGATC+AGG - chr7_3:20782856-20782875 Msa1096450:three_prime_UTR 45.0%
! AGATGCTCATAGCCTTGCTA+GGG + chr7_3:20783201-20783220 None:intergenic 45.0%
! AAGATGCTCATAGCCTTGCT+AGG + chr7_3:20783202-20783221 None:intergenic 45.0%
ACCATCTGATAGCAAACGGT+AGG - chr7_3:20783389-20783408 Msa1096450:intron 45.0%
CCTAAAAGCTGATGAAGGAG+AGG + chr7_3:20783422-20783441 None:intergenic 45.0%
! CCTCTCCTTCATCAGCTTTT+AGG - chr7_3:20783419-20783438 Msa1096450:intron 45.0%
CCCATCCTAAAAGCTGATGA+AGG + chr7_3:20783427-20783446 None:intergenic 45.0%
TCAAGTAGTAGAGTGGGGAT+TGG + chr7_3:20783508-20783527 None:intergenic 45.0%
TCCTGGTCAAGTAGTAGAGT+GGG + chr7_3:20783514-20783533 None:intergenic 45.0%
!! GATGTGTTGCCGCTTTATTG+CGG - chr7_3:20783605-20783624 Msa1096450:intron 45.0%
GCAAACATGCCGCAATAAAG+CGG + chr7_3:20783617-20783636 None:intergenic 45.0%
AATTCCGCTGGGGTATGTTT+AGG - chr7_3:20784113-20784132 Msa1096450:intron 45.0%
TTCTCCTAAACATACCCCAG+CGG + chr7_3:20784120-20784139 None:intergenic 45.0%
GGTCAATTAAAGTGGCCCAT+TGG + chr7_3:20784210-20784229 None:intergenic 45.0%
GGATGAAAGTAACGAGAGAG+GGG + chr7_3:20784609-20784628 None:intergenic 45.0%
GTGGATGAAAGTAACGAGAG+AGG + chr7_3:20784611-20784630 None:intergenic 45.0%
!! TACTTCTGGGATACGGTATC+CGG - chr7_3:20784837-20784856 Msa1096450:intron 45.0%
TATTGGATACCGATACTCCG+CGG + chr7_3:20784868-20784887 None:intergenic 45.0%
ATCCAATACGTATCCGACAC+GGG - chr7_3:20784880-20784899 Msa1096450:intron 45.0%
AAGATGCTCTTTACTCGGTC+CGG - chr7_3:20785495-20785514 Msa1096450:intron 45.0%
CGACTTCAGTTATGTCTTCC+CGG + chr7_3:20785517-20785536 None:intergenic 45.0%
CGGGAAGACATAACTGAAGT+CGG - chr7_3:20785515-20785534 Msa1096450:intron 45.0%
GTGGTGTTTCATACTCTTGC+AGG - chr7_3:20785620-20785639 Msa1096450:intron 45.0%
GGTGTTTCATACTCTTGCAG+GGG - chr7_3:20785622-20785641 Msa1096450:intron 45.0%
AGCGGGACTAACAAGAAATG+TGG + chr7_3:20785651-20785670 None:intergenic 45.0%
TGAGGAGATGGAACCAGATA+TGG - chr7_3:20786159-20786178 Msa1096450:three_prime_UTR 45.0%
GTTACATGCTTCACATCCGT+TGG + chr7_3:20786196-20786215 None:intergenic 45.0%
!! AATGAGTGGTTGGTGAGCTT+GGG + chr7_3:20786341-20786360 None:intergenic 45.0%
!! TTTATTCAATTAAAATAATA+AGG - chr7_3:20783782-20783801 Msa1096450:intron 5.0%
!! TTTATTCAATTAAAATAATA+AGG - chr7_3:20783782-20783801 Msa1096450:intron 5.0%
CCTGCAGCTACATTAGGCTT+TGG + chr7_3:20782840-20782859 None:intergenic 50.0%
CCAAAGCCTAATGTAGCTGC+AGG - chr7_3:20782837-20782856 Msa1096450:three_prime_UTR 50.0%
!! GCCTACCGTTTGCTATCAGA+TGG + chr7_3:20783393-20783412 None:intergenic 50.0%
GCTGATGAAGGAGAGGCTTT+AGG + chr7_3:20783415-20783434 None:intergenic 50.0%
CCTGGTCAAGTAGTAGAGTG+GGG + chr7_3:20783513-20783532 None:intergenic 50.0%
CTCCTGGTCAAGTAGTAGAG+TGG + chr7_3:20783515-20783534 None:intergenic 50.0%
CCGTATCACACTACGTATCC+GGG + chr7_3:20784269-20784288 None:intergenic 50.0%
CCCGGATACGTAGTGTGATA+CGG - chr7_3:20784266-20784285 Msa1096450:intron 50.0%
CCCGTATCACACTACGTATC+CGG + chr7_3:20784270-20784289 None:intergenic 50.0%
CCGGATACGTAGTGTGATAC+GGG - chr7_3:20784267-20784286 Msa1096450:intron 50.0%
TACCCGTGTCGGATACGTAT+TGG + chr7_3:20784885-20784904 None:intergenic 50.0%
ATACGTATCCGACACGGGTA+CGG - chr7_3:20784885-20784904 Msa1096450:intron 50.0%
!!! CGGCACCATTTTGGAGTATC+CGG - chr7_3:20784905-20784924 Msa1096450:intron 50.0%
!!! GGCACCATTTTGGAGTATCC+GGG - chr7_3:20784906-20784925 Msa1096450:intron 50.0%
GAAGCCCGGATACTCCAAAA+TGG + chr7_3:20784913-20784932 None:intergenic 50.0%
! TTGGAGTATCCGGGCTTCAT+AGG - chr7_3:20784915-20784934 Msa1096450:intron 50.0%
AGATGCTCTTTACTCGGTCC+GGG - chr7_3:20785496-20785515 Msa1096450:intron 50.0%
ACTTGGACGAGAGCAAAGAC+CGG + chr7_3:20785559-20785578 None:intergenic 50.0%
CGTCCAAGTATGCCAACTCT+CGG - chr7_3:20785570-20785589 Msa1096450:intron 50.0%
GTCCAAGTATGCCAACTCTC+GGG - chr7_3:20785571-20785590 Msa1096450:intron 50.0%
AACAAACTCCACCCGAGAGT+TGG + chr7_3:20785585-20785604 None:intergenic 50.0%
! ACTCTCGGGTGGAGTTTGTT+CGG - chr7_3:20785585-20785604 Msa1096450:intron 50.0%
TGTTCGGCGACAAGCTAATG+TGG - chr7_3:20785601-20785620 Msa1096450:intron 50.0%
GTTTCATACTCTTGCAGGGG+AGG - chr7_3:20785625-20785644 Msa1096450:intron 50.0%
!! CAATGAGTGGTTGGTGAGCT+TGG + chr7_3:20786342-20786361 None:intergenic 50.0%
CCTGCAGCTACATTAGGCTT+TGG + chr7_3:20782840-20782859 None:intergenic 50.0%
CCAAAGCCTAATGTAGCTGC+AGG - chr7_3:20782837-20782856 Msa1096450:three_prime_UTR 50.0%
!! GCCTACCGTTTGCTATCAGA+TGG + chr7_3:20783393-20783412 None:intergenic 50.0%
GCTGATGAAGGAGAGGCTTT+AGG + chr7_3:20783415-20783434 None:intergenic 50.0%
CCTGGTCAAGTAGTAGAGTG+GGG + chr7_3:20783513-20783532 None:intergenic 50.0%
CTCCTGGTCAAGTAGTAGAG+TGG + chr7_3:20783515-20783534 None:intergenic 50.0%
CCGTATCACACTACGTATCC+GGG + chr7_3:20784269-20784288 None:intergenic 50.0%
CCCGGATACGTAGTGTGATA+CGG - chr7_3:20784266-20784285 Msa1096450:intron 50.0%
CCCGTATCACACTACGTATC+CGG + chr7_3:20784270-20784289 None:intergenic 50.0%
CCGGATACGTAGTGTGATAC+GGG - chr7_3:20784267-20784286 Msa1096450:intron 50.0%
TACCCGTGTCGGATACGTAT+TGG + chr7_3:20784885-20784904 None:intergenic 50.0%
ATACGTATCCGACACGGGTA+CGG - chr7_3:20784885-20784904 Msa1096450:intron 50.0%
!!! CGGCACCATTTTGGAGTATC+CGG - chr7_3:20784905-20784924 Msa1096450:intron 50.0%
!!! GGCACCATTTTGGAGTATCC+GGG - chr7_3:20784906-20784925 Msa1096450:intron 50.0%
GAAGCCCGGATACTCCAAAA+TGG + chr7_3:20784913-20784932 None:intergenic 50.0%
! TTGGAGTATCCGGGCTTCAT+AGG - chr7_3:20784915-20784934 Msa1096450:intron 50.0%
AGATGCTCTTTACTCGGTCC+GGG - chr7_3:20785496-20785515 Msa1096450:intron 50.0%
ACTTGGACGAGAGCAAAGAC+CGG + chr7_3:20785559-20785578 None:intergenic 50.0%
CGTCCAAGTATGCCAACTCT+CGG - chr7_3:20785570-20785589 Msa1096450:intron 50.0%
GTCCAAGTATGCCAACTCTC+GGG - chr7_3:20785571-20785590 Msa1096450:intron 50.0%
AACAAACTCCACCCGAGAGT+TGG + chr7_3:20785585-20785604 None:intergenic 50.0%
! ACTCTCGGGTGGAGTTTGTT+CGG - chr7_3:20785585-20785604 Msa1096450:intron 50.0%
TGTTCGGCGACAAGCTAATG+TGG - chr7_3:20785601-20785620 Msa1096450:intron 50.0%
GTTTCATACTCTTGCAGGGG+AGG - chr7_3:20785625-20785644 Msa1096450:intron 50.0%
!! CAATGAGTGGTTGGTGAGCT+TGG + chr7_3:20786342-20786361 None:intergenic 50.0%
! TGCTCATAGCCTTGCTAGGG+CGG + chr7_3:20783198-20783217 None:intergenic 55.0%
CCCCACTCTACTACTTGACC+AGG - chr7_3:20783510-20783529 Msa1096450:intron 55.0%
! TACGGTATCCGGAGTATCCG+CGG - chr7_3:20784848-20784867 Msa1096450:intron 55.0%
!! AAATGGTGCCGTACCCGTGT+CGG + chr7_3:20784896-20784915 None:intergenic 55.0%
! ACACGGGTACGGCACCATTT+TGG - chr7_3:20784896-20784915 Msa1096450:intron 55.0%
CTTGGACGAGAGCAAAGACC+GGG + chr7_3:20785558-20785577 None:intergenic 55.0%
CACCCGAGAGTTGGCATACT+TGG + chr7_3:20785576-20785595 None:intergenic 55.0%
CAAGTATGCCAACTCTCGGG+TGG - chr7_3:20785574-20785593 Msa1096450:intron 55.0%
TTGGTGAGCTTGGGTAGCCA+TGG + chr7_3:20786332-20786351 None:intergenic 55.0%
! TGCTCATAGCCTTGCTAGGG+CGG + chr7_3:20783198-20783217 None:intergenic 55.0%
CCCCACTCTACTACTTGACC+AGG - chr7_3:20783510-20783529 Msa1096450:intron 55.0%
! TACGGTATCCGGAGTATCCG+CGG - chr7_3:20784848-20784867 Msa1096450:intron 55.0%
!! AAATGGTGCCGTACCCGTGT+CGG + chr7_3:20784896-20784915 None:intergenic 55.0%
! ACACGGGTACGGCACCATTT+TGG - chr7_3:20784896-20784915 Msa1096450:intron 55.0%
CTTGGACGAGAGCAAAGACC+GGG + chr7_3:20785558-20785577 None:intergenic 55.0%
CACCCGAGAGTTGGCATACT+TGG + chr7_3:20785576-20785595 None:intergenic 55.0%
CAAGTATGCCAACTCTCGGG+TGG - chr7_3:20785574-20785593 Msa1096450:intron 55.0%
TTGGTGAGCTTGGGTAGCCA+TGG + chr7_3:20786332-20786351 None:intergenic 55.0%
GAGATGTGACCGCCCTAGCA+AGG - chr7_3:20783186-20783205 Msa1096450:intron 60.0%
CCGATACTCCGCGGATACTC+CGG + chr7_3:20784859-20784878 None:intergenic 60.0%
! CCGGAGTATCCGCGGAGTAT+CGG - chr7_3:20784856-20784875 Msa1096450:intron 60.0%
GAGATGTGACCGCCCTAGCA+AGG - chr7_3:20783186-20783205 Msa1096450:intron 60.0%
CCGATACTCCGCGGATACTC+CGG + chr7_3:20784859-20784878 None:intergenic 60.0%
! CCGGAGTATCCGCGGAGTAT+CGG - chr7_3:20784856-20784875 Msa1096450:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 20782479 20786563 20782479 ID=Msa1096450;Name=Msa1096450
chr7_3 mRNA 20782479 20786563 20782479 ID=Msa1096450-mRNA-1;Parent=Msa1096450;Name=Msa1096450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=69|1|1|1|0|0|2|480|99
chr7_3 exon 20782479 20782899 20782479 ID=Msa1096450-mRNA-1:exon:4497;Parent=Msa1096450-mRNA-1
chr7_3 exon 20786136 20786563 20786136 ID=Msa1096450-mRNA-1:exon:4496;Parent=Msa1096450-mRNA-1
chr7_3 five_prime_UTR 20786495 20786563 20786495 ID=Msa1096450-mRNA-1:five_prime_utr;Parent=Msa1096450-mRNA-1
chr7_3 CDS 20786195 20786494 20786195 ID=Msa1096450-mRNA-1:cds;Parent=Msa1096450-mRNA-1
chr7_3 three_prime_UTR 20786136 20786194 20786136 ID=Msa1096450-mRNA-1:three_prime_utr;Parent=Msa1096450-mRNA-1
chr7_3 three_prime_UTR 20782479 20782899 20782479 ID=Msa1096450-mRNA-1:three_prime_utr;Parent=Msa1096450-mRNA-1
Gene Sequence

>Msa1096450

ATGAGAAATCATATGGAGAGATTAGTAGTTCTTCCTTTTTCTTTCAGGTGTGCTTCTAATTCAAGTGTGGAATTAGGTGAACAAAAAGTGCAAAAACTAGATTCAAAAGACTCAATTGATTCAAGTAGTTTCTCCTCTAAAGTTATTTCAACGTTTCTATATTCATTCATTTTTCTTTCTTTAGTTATTGGAGTTCGTAATTTGAAATATTTGTTTGCAAGGAAGACAAGAAGGACAAGTTATCACAACCAAAATCAAGAAAAAAAGGTCTTCTGGATTTTTTGTTCTACCAAAGCCTAA
Protein sequence

>Msa1096450

MRNHMERLVVLPFSFRCASNSSVELGEQKVQKLDSKDSIDSSSFSSKVISTFLYSFIFLSLVIGVRNLKYLFARKTRRTSYHNQNQEKKVFWIFCSTKA*