Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068600 | XP_003621682.1 | 94.118 | 170 | 8 | 2 | 1 | 168 | 1 | 170 | 6.28e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068600 | sp|Q9FFD5|RIC4_ARATH | 40.278 | 144 | 73 | 4 | 1 | 138 | 1 | 137 | 5.46e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068600 | G7KTT6 | 94.118 | 170 | 8 | 2 | 1 | 168 | 1 | 170 | 3.00e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005380 | Msa1068600 | 0.812245 | 4.671820e-51 | -8.615850e-47 |
| Msa0026750 | Msa1068600 | 0.802485 | 5.485485e-49 | -8.615850e-47 |
| Msa0075160 | Msa1068600 | -0.803700 | 3.076101e-49 | -8.615850e-47 |
| Msa0646240 | Msa1068600 | 0.811213 | 7.832649e-51 | -8.615850e-47 |
| Msa0658890 | Msa1068600 | 0.802043 | 6.765896e-49 | -8.615850e-47 |
| Msa0695880 | Msa1068600 | 0.807500 | 4.903005e-50 | -8.615850e-47 |
| Msa0711450 | Msa1068600 | 0.816697 | 4.837766e-52 | -8.615850e-47 |
| Msa0123000 | Msa1068600 | -0.808628 | 2.820415e-50 | -8.615850e-47 |
| Msa0168410 | Msa1068600 | -0.801216 | 9.997372e-49 | -8.615850e-47 |
| Msa0219590 | Msa1068600 | 0.809392 | 1.936037e-50 | -8.615850e-47 |
| Msa1068600 | Msa1096450 | 0.863044 | 3.295802e-64 | -8.615850e-47 |
| Msa1068600 | Msa1101090 | 0.811493 | 6.811801e-51 | -8.615850e-47 |
| Msa1068600 | Msa1140540 | 0.829692 | 4.464586e-55 | -8.615850e-47 |
| Msa1068600 | Msa1232700 | 0.817394 | 3.373251e-52 | -8.615850e-47 |
| Msa1068600 | Msa1238600 | 0.810870 | 9.298462e-51 | -8.615850e-47 |
| Msa1068600 | Msa1238660 | 0.832637 | 8.438532e-56 | -8.615850e-47 |
| Msa1068600 | Msa1271130 | 0.800005 | 1.765178e-48 | -8.615850e-47 |
| Msa1068600 | Msa1313280 | 0.821960 | 3.057350e-53 | -8.615850e-47 |
| Msa1068600 | Msa1319560 | 0.829864 | 4.055713e-55 | -8.615850e-47 |
| Msa1068600 | Msa1325410 | -0.802087 | 6.624794e-49 | -8.615850e-47 |
| Msa1068600 | Msa1345100 | 0.807622 | 4.618966e-50 | -8.615850e-47 |
| Msa1068600 | Msa1419690 | 0.812761 | 3.603435e-51 | -8.615850e-47 |
| Msa1068600 | Msa1437730 | 0.808246 | 3.402498e-50 | -8.615850e-47 |
| Msa0287840 | Msa1068600 | 0.813941 | 1.983409e-51 | -8.615850e-47 |
| Msa0878220 | Msa1068600 | 0.831623 | 1.503184e-55 | -8.615850e-47 |
| Msa0943970 | Msa1068600 | 0.846168 | 2.572765e-59 | -8.615850e-47 |
| Msa0944020 | Msa1068600 | 0.818127 | 2.305303e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068600 | MtrunA17_Chr7g0221761 | 94.118 | 170 | 8 | 2 | 1 | 168 | 1 | 170 | 5.78e-116 | 325 |
| Msa1068600 | MtrunA17_Chr7g0249251 | 37.975 | 158 | 83 | 5 | 1 | 145 | 1 | 156 | 1.06e-24 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1068600 | AT5G16490.1 | 40.278 | 144 | 73 | 4 | 1 | 138 | 1 | 137 | 5.55e-23 | 89.4 |
| Msa1068600 | AT1G27380.4 | 33.557 | 149 | 70 | 4 | 1 | 122 | 1 | 147 | 6.67e-17 | 73.9 |
| Msa1068600 | AT1G27380.3 | 53.571 | 56 | 25 | 1 | 68 | 122 | 9 | 64 | 2.89e-13 | 62.4 |
| Msa1068600 | AT1G27380.1 | 52.632 | 57 | 26 | 1 | 67 | 122 | 35 | 91 | 4.37e-13 | 62.8 |
| Msa1068600 | AT1G27380.2 | 52.632 | 57 | 26 | 1 | 67 | 122 | 35 | 91 | 4.37e-13 | 62.8 |
Find 38 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTGCTTTAACGTAAT+TGG | 0.106249 | 7_2:-63670906 | None:intergenic |
| CATGATATTTGTAACTTCTT+TGG | 0.215077 | 7_2:+63671129 | Msa1068600:three_prime_UTR |
| ATGGAACGGGATATGGAAAT+AGG | 0.231017 | 7_2:+63670771 | Msa1068600:CDS |
| TGAGGATATGGAACGGGATA+TGG | 0.256260 | 7_2:+63670764 | Msa1068600:CDS |
| TCTAATTCAAGTGTGGAATT+AGG | 0.264997 | 7_2:+63667744 | Msa1068600:CDS |
| TACGTTAAAGCAATTTGAAT+TGG | 0.328292 | 7_2:+63670911 | Msa1068600:CDS |
| GAAGCACACCTGAAAGAAAA+AGG | 0.337416 | 7_2:-63667723 | None:intergenic |
| GGAGATAAAGAAAGTAATTC+AGG | 0.354220 | 7_2:-63670885 | None:intergenic |
| GTGGGACTTATTATTATTGT+TGG | 0.379448 | 7_2:+63671001 | Msa1068600:three_prime_UTR |
| CCAATCTTTAACATTATTTG+TGG | 0.386735 | 7_2:-63670847 | None:intergenic |
| CCACAAATAATGTTAAAGAT+TGG | 0.389223 | 7_2:+63670847 | Msa1068600:CDS |
| GTGAAGCATGTAACACATAT+TGG | 0.392648 | 7_2:+63670807 | Msa1068600:CDS |
| AACTATTATTGTTAATTTGA+GGG | 0.395391 | 7_2:-63667623 | None:intergenic |
| GTAACACATATTGGACTTGA+TGG | 0.403212 | 7_2:+63670816 | Msa1068600:CDS |
| CCTGCAGCTACATTAGGCTT+TGG | 0.406315 | 7_2:-63667979 | None:intergenic |
| CAACTATTATTGTTAATTTG+AGG | 0.414083 | 7_2:-63667624 | None:intergenic |
| CAATGAGTGGTTGGTGAGCT+TGG | 0.421221 | 7_2:-63670944 | None:intergenic |
| CACAAATAATGTTAAAGATT+GGG | 0.428541 | 7_2:+63670848 | Msa1068600:CDS |
| TGGAACGGGATATGGAAATA+GGG | 0.445830 | 7_2:+63670772 | Msa1068600:CDS |
| AGAAGAAATGAGAAATCATA+TGG | 0.448869 | 7_2:+63667683 | Msa1068600:exon |
| TAAAGATTGGGACAATTTGA+AGG | 0.461704 | 7_2:+63670860 | Msa1068600:CDS |
| GCATATTGAGGATATGGAAC+GGG | 0.468310 | 7_2:+63670758 | Msa1068600:CDS |
| TGTATGCCTGCAGCTACATT+AGG | 0.488754 | 7_2:-63667985 | None:intergenic |
| AAGAGTTATCAATGAGTGGT+TGG | 0.512846 | 7_2:-63670953 | None:intergenic |
| AATGAGTGGTTGGTGAGCTT+GGG | 0.519534 | 7_2:-63670943 | None:intergenic |
| TGTTTGCAAGGAAGACAAGA+AGG | 0.535313 | 7_2:+63667901 | Msa1068600:intron |
| CCAAAGCCTAATGTAGCTGC+AGG | 0.535602 | 7_2:+63667979 | Msa1068600:CDS |
| CAGGCATACAGAGATTGATC+AGG | 0.545062 | 7_2:+63667998 | Msa1068600:CDS |
| AAAGCAATTTGAATTGGCCA+TGG | 0.548884 | 7_2:+63670917 | Msa1068600:CDS |
| TAACACATATTGGACTTGAT+GGG | 0.552869 | 7_2:+63670817 | Msa1068600:CDS |
| TTGGTGAGCTTGGGTAGCCA+TGG | 0.554788 | 7_2:-63670934 | None:intergenic |
| GGAGAAGAGTTATCAATGAG+TGG | 0.571021 | 7_2:-63670957 | None:intergenic |
| GTTACATGCTTCACATCCGT+TGG | 0.572507 | 7_2:-63670798 | None:intergenic |
| AGCATATTGAGGATATGGAA+CGG | 0.584231 | 7_2:+63670757 | Msa1068600:CDS |
| GATGATAATGATGATGATGA+TGG | 0.588201 | 7_2:+63671056 | Msa1068600:three_prime_UTR |
| TATTATTGTTAATTTGAGGG+AGG | 0.623153 | 7_2:-63667620 | None:intergenic |
| GTGTGCTTCTAATTCAAGTG+TGG | 0.662982 | 7_2:+63667737 | Msa1068600:CDS |
| TATGGAAATAGGGTATCCAA+CGG | 0.667023 | 7_2:+63670782 | Msa1068600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAAATGCTTTTAA+AGG | + | chr7_2:63670301-63670320 | Msa1068600:intron | 10.0% |
| !! | TTATTCATATATTTGTATTA+TGG | + | chr7_2:63670515-63670534 | Msa1068600:intron | 10.0% |
| !!! | AAGTATTTTTAATTACATTT+TGG | - | chr7_2:63670981-63671000 | None:intergenic | 10.0% |
| !!! | AACTATTATTGTTAATTTGA+GGG | - | chr7_2:63667626-63667645 | None:intergenic | 15.0% |
| !!! | ATTTTTCTTTCTTTAGTTAT+TGG | + | chr7_2:63667858-63667877 | Msa1068600:intron | 15.0% |
| !! | TTTACATCTTAATTTATTGT+TGG | + | chr7_2:63668083-63668102 | Msa1068600:intron | 15.0% |
| !!! | TACTTAATTTGATTATATGT+CGG | - | chr7_2:63668164-63668183 | None:intergenic | 15.0% |
| !! | AGTAATATTCTAAATTTGAA+TGG | - | chr7_2:63669081-63669100 | None:intergenic | 15.0% |
| !!! | TATTTTTTTACAAATGAAGA+AGG | + | chr7_2:63669712-63669731 | Msa1068600:intron | 15.0% |
| !! | ATACAAATATATGAATAAGT+GGG | - | chr7_2:63670454-63670473 | None:intergenic | 15.0% |
| !! | TATACAAATATATGAATAAG+TGG | - | chr7_2:63670455-63670474 | None:intergenic | 15.0% |
| !! | ATACAAATATATGAATAAGT+GGG | - | chr7_2:63670454-63670473 | None:intergenic | 15.0% |
| !! | AATACAAATATATGAATAAG+TGG | - | chr7_2:63670514-63670533 | None:intergenic | 15.0% |
| !! | AATGTAATTAAAAATACTTG+TGG | + | chr7_2:63670982-63671001 | Msa1068600:exon | 15.0% |
| !! | ATGTAATTAAAAATACTTGT+GGG | + | chr7_2:63670983-63671002 | Msa1068600:exon | 15.0% |
| !!! | TATCATGAATTTTAATTGTA+TGG | - | chr7_2:63671116-63671135 | None:intergenic | 15.0% |
| !!! | CAACTATTATTGTTAATTTG+AGG | - | chr7_2:63667627-63667646 | None:intergenic | 20.0% |
| !! | ATATACACCAACAAAAAATT+GGG | + | chr7_2:63667657-63667676 | Msa1068600:five_prime_UTR | 20.0% |
| !!! | ATTTGAAATATTTGTTTGCA+AGG | + | chr7_2:63667889-63667908 | Msa1068600:intron | 20.0% |
| !!! | AATTTGTTTTTGTTTGTACA+TGG | + | chr7_2:63668117-63668136 | Msa1068600:intron | 20.0% |
| !!! | ACTTAATTTGATTATATGTC+GGG | - | chr7_2:63668163-63668182 | None:intergenic | 20.0% |
| !! | TTTGATTAGCAATAATAGTT+TGG | + | chr7_2:63668269-63668288 | Msa1068600:intron | 20.0% |
| !!! | AATAATAGTTTGGAACAATT+GGG | + | chr7_2:63668279-63668298 | Msa1068600:intron | 20.0% |
| !! | TTTAGCAAAAACAAAACTTT+AGG | - | chr7_2:63668573-63668592 | None:intergenic | 20.0% |
| !!! | CATTGGTATACAATTTATTT+TGG | + | chr7_2:63669466-63669485 | Msa1068600:intron | 20.0% |
| !!! | TTTTTATTGGTCAAAAACAA+TGG | + | chr7_2:63669549-63669568 | Msa1068600:intron | 20.0% |
| !! | TAGCTAAGTTTATAACTTTA+TGG | + | chr7_2:63669866-63669885 | Msa1068600:intron | 20.0% |
| !! | ATCAAAGTTTCAATACAATT+GGG | - | chr7_2:63670140-63670159 | None:intergenic | 20.0% |
| !! | AATCAAAGTTTCAATACAAT+TGG | - | chr7_2:63670141-63670160 | None:intergenic | 20.0% |
| !!! | TTTTCTCTCAAAAAACTTTA+GGG | + | chr7_2:63670185-63670204 | Msa1068600:intron | 20.0% |
| !!! | ATCGTTTTAATTTTTTAGCT+CGG | - | chr7_2:63670215-63670234 | None:intergenic | 20.0% |
| !! | CACAAATAATGTTAAAGATT+GGG | + | chr7_2:63670848-63670867 | Msa1068600:CDS | 20.0% |
| !!! | GTTGATAATGATGTTTTTAT+AGG | + | chr7_2:63671078-63671097 | Msa1068600:three_prime_UTR | 20.0% |
| ! | CATATACACCAACAAAAAAT+TGG | + | chr7_2:63667656-63667675 | Msa1068600:five_prime_UTR | 25.0% |
| !!! | TTCTAAACCCAATTTTTTGT+TGG | - | chr7_2:63667667-63667686 | None:intergenic | 25.0% |
| ! | AGAAGAAATGAGAAATCATA+TGG | + | chr7_2:63667683-63667702 | Msa1068600:exon | 25.0% |
| ! | CAACCAAAATCAAGAAAAAA+AGG | + | chr7_2:63667935-63667954 | Msa1068600:CDS | 25.0% |
| !!! | AGACCTTTTTTTCTTGATTT+TGG | - | chr7_2:63667941-63667960 | None:intergenic | 25.0% |
| !! | TTTGTTTGTACATGGAATTT+TGG | + | chr7_2:63668125-63668144 | Msa1068600:intron | 25.0% |
| !! | CAATAATAGTTTGGAACAAT+TGG | + | chr7_2:63668278-63668297 | Msa1068600:intron | 25.0% |
| ! | TCAATGAACAAATGGAAATT+AGG | + | chr7_2:63668306-63668325 | Msa1068600:intron | 25.0% |
| ! | ACACTATATATGTTATATCG+CGG | - | chr7_2:63668811-63668830 | None:intergenic | 25.0% |
| !!! | TCTTTTAAAAAAAATTCCGC+TGG | + | chr7_2:63669240-63669259 | Msa1068600:intron | 25.0% |
| !!! | CTTTTAAAAAAAATTCCGCT+GGG | + | chr7_2:63669241-63669260 | Msa1068600:intron | 25.0% |
| !!! | TTTTAAAAAAAATTCCGCTG+GGG | + | chr7_2:63669242-63669261 | Msa1068600:intron | 25.0% |
| ! | ACGCTACAATTTATTTGAAA+TGG | + | chr7_2:63669316-63669335 | Msa1068600:intron | 25.0% |
| ! | AAAAAATGGGTCAATTAAAG+TGG | - | chr7_2:63669357-63669376 | None:intergenic | 25.0% |
| !!! | TAATTGACCCATTTTTTAGT+AGG | + | chr7_2:63669360-63669379 | Msa1068600:intron | 25.0% |
| !! | AGTTATGAAGGTAATTTTTG+GGG | - | chr7_2:63669444-63669463 | None:intergenic | 25.0% |
| !! | CAGTTATGAAGGTAATTTTT+GGG | - | chr7_2:63669445-63669464 | None:intergenic | 25.0% |
| !! | ACAGTTATGAAGGTAATTTT+TGG | - | chr7_2:63669446-63669465 | None:intergenic | 25.0% |
| ! | AAAACAATGGAGAGAAAAAA+AGG | + | chr7_2:63669562-63669581 | Msa1068600:intron | 25.0% |
| !!! | TTGTTAGATTTTTTCGAAGA+AGG | + | chr7_2:63669678-63669697 | Msa1068600:intron | 25.0% |
| !!! | TGTTAGATTTTTTCGAAGAA+GGG | + | chr7_2:63669679-63669698 | Msa1068600:intron | 25.0% |
| ! | CTTCAAAATCCATATTATCA+AGG | - | chr7_2:63669908-63669927 | None:intergenic | 25.0% |
| ! | GGTATATGAAAATAAATAGC+GGG | - | chr7_2:63670119-63670138 | None:intergenic | 25.0% |
| ! | GGGTATATGAAAATAAATAG+CGG | - | chr7_2:63670120-63670139 | None:intergenic | 25.0% |
| !! | CTTTTCTCTCAAAAAACTTT+AGG | + | chr7_2:63670184-63670203 | Msa1068600:intron | 25.0% |
| !!! | TCGTTTTAATTTTTTAGCTC+GGG | - | chr7_2:63670214-63670233 | None:intergenic | 25.0% |
| ! | TAAGCAATAATAAATCATCC+AGG | - | chr7_2:63670425-63670444 | None:intergenic | 25.0% |
| ! | TAAGTGGGATTGAAATAAAT+GGG | - | chr7_2:63670498-63670517 | None:intergenic | 25.0% |
| ! | ATAAGTGGGATTGAAATAAA+TGG | - | chr7_2:63670499-63670518 | None:intergenic | 25.0% |
| !! | AGTTTACAAAAAGCATATTG+AGG | + | chr7_2:63670746-63670765 | Msa1068600:intron | 25.0% |
| ! | CCAATCTTTAACATTATTTG+TGG | - | chr7_2:63670850-63670869 | None:intergenic | 25.0% |
| ! | CCACAAATAATGTTAAAGAT+TGG | + | chr7_2:63670847-63670866 | Msa1068600:CDS | 25.0% |
| ! | TCAAATTGCTTTAACGTAAT+TGG | - | chr7_2:63670909-63670928 | None:intergenic | 25.0% |
| ! | TACGTTAAAGCAATTTGAAT+TGG | + | chr7_2:63670911-63670930 | Msa1068600:CDS | 25.0% |
| ! | CATGATATTTGTAACTTCTT+TGG | + | chr7_2:63671129-63671148 | Msa1068600:three_prime_UTR | 25.0% |
| ! | TAGTTCTTCCTTTTTCTTTC+AGG | + | chr7_2:63667715-63667734 | Msa1068600:CDS | 30.0% |
| TCTAATTCAAGTGTGGAATT+AGG | + | chr7_2:63667744-63667763 | Msa1068600:CDS | 30.0% | |
| !! | AAACGTTGAAATAGCTTTAG+AGG | - | chr7_2:63667826-63667845 | None:intergenic | 30.0% |
| ATCAAGAAAAAAAGGTCTTC+TGG | + | chr7_2:63667943-63667962 | Msa1068600:CDS | 30.0% | |
| CACTTCTAACTTTCTATGTT+CGG | + | chr7_2:63668674-63668693 | Msa1068600:intron | 30.0% | |
| AGTAGCCAAAGAGTTAATAA+GGG | + | chr7_2:63668849-63668868 | Msa1068600:intron | 30.0% | |
| CTTATCCCTTATTAACTCTT+TGG | - | chr7_2:63668857-63668876 | None:intergenic | 30.0% | |
| ! | AGAGCAAACATTTTATCACA+TGG | + | chr7_2:63669044-63669063 | Msa1068600:intron | 30.0% |
| !!! | GTTTTTTTTTCAACTGTCGT+CGG | + | chr7_2:63669119-63669138 | Msa1068600:intron | 30.0% |
| CTCATCTCCTACTAAAAAAT+GGG | - | chr7_2:63669370-63669389 | None:intergenic | 30.0% | |
| ACTCATCTCCTACTAAAAAA+TGG | - | chr7_2:63669371-63669390 | None:intergenic | 30.0% | |
| ATTACCTTCATAACTGTCAT+TGG | + | chr7_2:63669449-63669468 | Msa1068600:intron | 30.0% | |
| TATACCAATGACAGTTATGA+AGG | - | chr7_2:63669456-63669475 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | - | chr7_2:63669511-63669530 | None:intergenic | 30.0% | |
| !! | AGGCATAATTTGTTAGAAGT+CGG | + | chr7_2:63669732-63669751 | Msa1068600:intron | 30.0% |
| TATTATCAAGGTGCATATCA+CGG | - | chr7_2:63669896-63669915 | None:intergenic | 30.0% | |
| ! | TGATATGCACCTTGATAATA+TGG | + | chr7_2:63669896-63669915 | Msa1068600:intron | 30.0% |
| ! | CAAAAAGCATATTGAGGATA+TGG | + | chr7_2:63670752-63670771 | Msa1068600:CDS | 30.0% |
| TAACACATATTGGACTTGAT+GGG | + | chr7_2:63670817-63670836 | Msa1068600:CDS | 30.0% | |
| TAAAGATTGGGACAATTTGA+AGG | + | chr7_2:63670860-63670879 | Msa1068600:CDS | 30.0% | |
| GGAGATAAAGAAAGTAATTC+AGG | - | chr7_2:63670888-63670907 | None:intergenic | 30.0% | |
| GTGGGACTTATTATTATTGT+TGG | + | chr7_2:63671001-63671020 | Msa1068600:three_prime_UTR | 30.0% | |
| ! | GATGATAATGATGATGATGA+TGG | + | chr7_2:63671056-63671075 | Msa1068600:three_prime_UTR | 30.0% |
| TGGGCATATCAATGAACAAA+TGG | + | chr7_2:63668298-63668317 | Msa1068600:intron | 35.0% | |
| ! | ACTCGTTGGTTGAGTTTATT+AGG | - | chr7_2:63668372-63668391 | None:intergenic | 35.0% |
| AACCAACGAGTTTGTGAAAA+AGG | + | chr7_2:63668381-63668400 | Msa1068600:intron | 35.0% | |
| CGTAGAGATGAATATGAACT+TGG | - | chr7_2:63668442-63668461 | None:intergenic | 35.0% | |
| TTCAACCATCTGATAGCAAA+CGG | + | chr7_2:63668532-63668551 | Msa1068600:intron | 35.0% | |
| ! | CAAAACTTTAGGAGAGCTTT+AGG | - | chr7_2:63668562-63668581 | None:intergenic | 35.0% |
| ATGTGTATTAGAGACGATGA+AGG | - | chr7_2:63668605-63668624 | None:intergenic | 35.0% | |
| GTTAGAATCTACTCTTGAGT+TGG | - | chr7_2:63668769-63668788 | None:intergenic | 35.0% | |
| GAGTAGCCAAAGAGTTAATA+AGG | + | chr7_2:63668848-63668867 | Msa1068600:intron | 35.0% | |
| AACGACGATTAACTGTCATT+GGG | + | chr7_2:63669213-63669232 | Msa1068600:intron | 35.0% | |
| AGAGAAAAAAAGGAAGAGAG+AGG | + | chr7_2:63669572-63669591 | Msa1068600:intron | 35.0% | |
| GTCGAAAAGTTGTCAAAAAG+TGG | + | chr7_2:63669629-63669648 | Msa1068600:intron | 35.0% | |
| ATTATCAAGGTGCATATCAC+GGG | - | chr7_2:63669895-63669914 | None:intergenic | 35.0% | |
| CACAAAAGATGCTCTTTACT+CGG | + | chr7_2:63669941-63669960 | Msa1068600:intron | 35.0% | |
| GTAATATTATCACTGCTTCC+CGG | + | chr7_2:63669988-63670007 | Msa1068600:intron | 35.0% | |
| AGCATATTGAGGATATGGAA+CGG | + | chr7_2:63670757-63670776 | Msa1068600:CDS | 35.0% | |
| ! | TATGGAAATAGGGTATCCAA+CGG | + | chr7_2:63670782-63670801 | Msa1068600:CDS | 35.0% |
| GTGAAGCATGTAACACATAT+TGG | + | chr7_2:63670807-63670826 | Msa1068600:CDS | 35.0% | |
| GTAACACATATTGGACTTGA+TGG | + | chr7_2:63670816-63670835 | Msa1068600:CDS | 35.0% | |
| AAAGCAATTTGAATTGGCCA+TGG | + | chr7_2:63670917-63670936 | Msa1068600:CDS | 35.0% | |
| AAGAGTTATCAATGAGTGGT+TGG | - | chr7_2:63670956-63670975 | None:intergenic | 35.0% | |
| GAAGCACACCTGAAAGAAAA+AGG | - | chr7_2:63667726-63667745 | None:intergenic | 40.0% | |
| GTGTGCTTCTAATTCAAGTG+TGG | + | chr7_2:63667737-63667756 | Msa1068600:CDS | 40.0% | |
| TGTTTGCAAGGAAGACAAGA+AGG | + | chr7_2:63667901-63667920 | Msa1068600:intron | 40.0% | |
| GGAAATTAGGTAGAGAGATG+TGG | + | chr7_2:63668319-63668338 | Msa1068600:intron | 40.0% | |
| ! | CGTTGGTTGAGTTTATTAGG+AGG | - | chr7_2:63668369-63668388 | None:intergenic | 40.0% |
| !! | GTCCTTTTTCACAAACTCGT+TGG | - | chr7_2:63668386-63668405 | None:intergenic | 40.0% |
| !! | GTTTGCTATCAGATGGTTGA+AGG | - | chr7_2:63668533-63668552 | None:intergenic | 40.0% |
| TCAAGTAGTAGATTGGGGAT+TGG | - | chr7_2:63668629-63668648 | None:intergenic | 40.0% | |
| TCCTGGTCAAGTAGTAGATT+GGG | - | chr7_2:63668635-63668654 | None:intergenic | 40.0% | |
| ATATTGATGCAGCTTTCTCC+TGG | - | chr7_2:63668652-63668671 | None:intergenic | 40.0% | |
| GTGTTTAACAGCACTGTCAA+TGG | + | chr7_2:63669183-63669202 | Msa1068600:intron | 40.0% | |
| GAACGACGATTAACTGTCAT+TGG | + | chr7_2:63669212-63669231 | Msa1068600:intron | 40.0% | |
| TTGAAATGGATCGAGTCCAA+TGG | + | chr7_2:63669330-63669349 | Msa1068600:intron | 40.0% | |
| TGAAATGGATCGAGTCCAAT+GGG | + | chr7_2:63669331-63669350 | Msa1068600:intron | 40.0% | |
| AAAGAAATAATGCACGTGCC+TGG | + | chr7_2:63670404-63670423 | Msa1068600:intron | 40.0% | |
| GCATATTGAGGATATGGAAC+GGG | + | chr7_2:63670758-63670777 | Msa1068600:CDS | 40.0% | |
| ATGGAACGGGATATGGAAAT+AGG | + | chr7_2:63670771-63670790 | Msa1068600:CDS | 40.0% | |
| TGGAACGGGATATGGAAATA+GGG | + | chr7_2:63670772-63670791 | Msa1068600:CDS | 40.0% | |
| GGAGAAGAGTTATCAATGAG+TGG | - | chr7_2:63670960-63670979 | None:intergenic | 40.0% | |
| TGTATGCCTGCAGCTACATT+AGG | - | chr7_2:63667988-63668007 | None:intergenic | 45.0% | |
| CAGGCATACAGAGATTGATC+AGG | + | chr7_2:63667998-63668017 | Msa1068600:CDS | 45.0% | |
| !! | GTCTACCGTTTGCTATCAGA+TGG | - | chr7_2:63668540-63668559 | None:intergenic | 45.0% |
| CCTGGTCAAGTAGTAGATTG+GGG | - | chr7_2:63668634-63668653 | None:intergenic | 45.0% | |
| CTCCTGGTCAAGTAGTAGAT+TGG | - | chr7_2:63668636-63668655 | None:intergenic | 45.0% | |
| AATTCCGCTGGGGTATGTTT+AGG | + | chr7_2:63669252-63669271 | Msa1068600:intron | 45.0% | |
| TTCTCCTAAACATACCCCAG+CGG | - | chr7_2:63669259-63669278 | None:intergenic | 45.0% | |
| GGTCAATTAAAGTGGCCCAT+TGG | - | chr7_2:63669349-63669368 | None:intergenic | 45.0% | |
| GACTTCAGTTATGTCTTCCC+GGG | - | chr7_2:63669967-63669986 | None:intergenic | 45.0% | |
| CGACTTCAGTTATGTCTTCC+CGG | - | chr7_2:63669968-63669987 | None:intergenic | 45.0% | |
| CGGGAAGACATAACTGAAGT+CGG | + | chr7_2:63669966-63669985 | Msa1068600:intron | 45.0% | |
| TGGTGTCTCATACTCTTGCT+GGG | + | chr7_2:63670072-63670091 | Msa1068600:intron | 45.0% | |
| AGCGGGACTAACAAGAAATG+TGG | - | chr7_2:63670102-63670121 | None:intergenic | 45.0% | |
| TGAGGATATGGAACGGGATA+TGG | + | chr7_2:63670764-63670783 | Msa1068600:CDS | 45.0% | |
| GTTACATGCTTCACATCCGT+TGG | - | chr7_2:63670801-63670820 | None:intergenic | 45.0% | |
| !! | AATGAGTGGTTGGTGAGCTT+GGG | - | chr7_2:63670946-63670965 | None:intergenic | 45.0% |
| !! | TTTATTCAATTAAAATAATA+AGG | + | chr7_2:63668921-63668940 | Msa1068600:intron | 5.0% |
| !! | AATAAAAAATAAGAAAAATA+AGG | - | chr7_2:63669537-63669556 | None:intergenic | 5.0% |
| !!! | TTATTTTTCTTATTTTTTAT+TGG | + | chr7_2:63669536-63669555 | Msa1068600:intron | 5.0% |
| CCTGCAGCTACATTAGGCTT+TGG | - | chr7_2:63667982-63668001 | None:intergenic | 50.0% | |
| CCAAAGCCTAATGTAGCTGC+AGG | + | chr7_2:63667979-63667998 | Msa1068600:CDS | 50.0% | |
| ! | GGTTGCTCATAGCCTTGCTA+GGG | - | chr7_2:63668348-63668367 | None:intergenic | 50.0% |
| ! | AGGTTGCTCATAGCCTTGCT+AGG | - | chr7_2:63668349-63668368 | None:intergenic | 50.0% |
| CCCCAATCTACTACTTGACC+AGG | + | chr7_2:63668631-63668650 | Msa1068600:intron | 50.0% | |
| !!! | GCTGTGTTGCCGTTTTGTTG+CGG | + | chr7_2:63668726-63668745 | Msa1068600:intron | 50.0% |
| GCAGACATGCCGCAACAAAA+CGG | - | chr7_2:63668738-63668757 | None:intergenic | 50.0% | |
| CGGACAACAATATGCGAGAG+GGG | - | chr7_2:63668791-63668810 | None:intergenic | 50.0% | |
| GCGGACAACAATATGCGAGA+GGG | - | chr7_2:63668792-63668811 | None:intergenic | 50.0% | |
| AAGATGCTCTTTACTCGGCC+CGG | + | chr7_2:63669946-63669965 | Msa1068600:intron | 50.0% | |
| ACTTGGACGAGAGCAAAGAC+CGG | - | chr7_2:63670010-63670029 | None:intergenic | 50.0% | |
| CGTCCAAGTATGCCAACTCT+CGG | + | chr7_2:63670021-63670040 | Msa1068600:intron | 50.0% | |
| GTCCAAGTATGCCAACTCTC+GGG | + | chr7_2:63670022-63670041 | Msa1068600:intron | 50.0% | |
| AACAAACTCCACCCGAGAGT+TGG | - | chr7_2:63670036-63670055 | None:intergenic | 50.0% | |
| ! | ACTCTCGGGTGGAGTTTGTT+CGG | + | chr7_2:63670036-63670055 | Msa1068600:intron | 50.0% |
| TGTTCGGCGACAAGCTAATG+TGG | + | chr7_2:63670052-63670071 | Msa1068600:intron | 50.0% | |
| GTGGTGTCTCATACTCTTGC+TGG | + | chr7_2:63670071-63670090 | Msa1068600:intron | 50.0% | |
| GTCTCATACTCTTGCTGGGA+AGG | + | chr7_2:63670076-63670095 | Msa1068600:intron | 50.0% | |
| !! | CAATGAGTGGTTGGTGAGCT+TGG | - | chr7_2:63670947-63670966 | None:intergenic | 50.0% |
| ! | TGCTCATAGCCTTGCTAGGG+CGG | - | chr7_2:63668345-63668364 | None:intergenic | 55.0% |
| CGCGGACAACAATATGCGAG+AGG | - | chr7_2:63668793-63668812 | None:intergenic | 55.0% | |
| AGATGCTCTTTACTCGGCCC+GGG | + | chr7_2:63669947-63669966 | Msa1068600:intron | 55.0% | |
| CTTGGACGAGAGCAAAGACC+GGG | - | chr7_2:63670009-63670028 | None:intergenic | 55.0% | |
| CACCCGAGAGTTGGCATACT+TGG | - | chr7_2:63670027-63670046 | None:intergenic | 55.0% | |
| CAAGTATGCCAACTCTCGGG+TGG | + | chr7_2:63670025-63670044 | Msa1068600:intron | 55.0% | |
| TTGGTGAGCTTGGGTAGCCA+TGG | - | chr7_2:63670937-63670956 | None:intergenic | 55.0% | |
| GAGATGTGGCCGCCCTAGCA+AGG | + | chr7_2:63668333-63668352 | Msa1068600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 63667623 | 63671168 | 63667623 | ID=Msa1068600;Name=Msa1068600 |
| chr7_2 | mRNA | 63667623 | 63671168 | 63667623 | ID=Msa1068600-mRNA-1;Parent=Msa1068600;Name=Msa1068600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|0|0|3|176|168 |
| chr7_2 | exon | 63667623 | 63667813 | 63667623 | ID=Msa1068600-mRNA-1:exon:13180;Parent=Msa1068600-mRNA-1 |
| chr7_2 | exon | 63667911 | 63668048 | 63667911 | ID=Msa1068600-mRNA-1:exon:13181;Parent=Msa1068600-mRNA-1 |
| chr7_2 | exon | 63670748 | 63671168 | 63670748 | ID=Msa1068600-mRNA-1:exon:13182;Parent=Msa1068600-mRNA-1 |
| chr7_2 | five_prime_UTR | 63667623 | 63667689 | 63667623 | ID=Msa1068600-mRNA-1:five_prime_utr;Parent=Msa1068600-mRNA-1 |
| chr7_2 | CDS | 63667690 | 63667813 | 63667690 | ID=Msa1068600-mRNA-1:cds;Parent=Msa1068600-mRNA-1 |
| chr7_2 | CDS | 63667911 | 63668048 | 63667911 | ID=Msa1068600-mRNA-1:cds;Parent=Msa1068600-mRNA-1 |
| chr7_2 | CDS | 63670748 | 63670992 | 63670748 | ID=Msa1068600-mRNA-1:cds;Parent=Msa1068600-mRNA-1 |
| chr7_2 | three_prime_UTR | 63670993 | 63671168 | 63670993 | ID=Msa1068600-mRNA-1:three_prime_utr;Parent=Msa1068600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
