AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140540 MtrunA17_Chr7g0221761 80.392 51 10 0 1 51 1 51 2.57e-22 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTGCTTTAACGTAAT+TGG 0.106249 7_4:+12278229 None:intergenic
CATGATATTTGTAACTTCTT+TGG 0.215077 7_4:-12278006 Msa1140540:three_prime_UTR
ATGGAACCAGATATGGAAAT+AGG 0.262567 7_4:-12278364 Msa1140540:three_prime_UTR
GGATACCCTATTTCCATATC+TGG 0.279714 7_4:+12278358 None:intergenic
AAACGTTGAAATAGCTTTAG+AGG 0.304799 7_4:+12281170 None:intergenic
TCCAATTCAAGTGTGGAATT+AGG 0.315174 7_4:-12281249 Msa1140540:CDS
ACCTAATTCCACACTTGAAT+TGG 0.317381 7_4:+12281248 None:intergenic
TACGTTAAAGCAATTTGAAT+TGG 0.328292 7_4:-12278224 Msa1140540:three_prime_UTR
GAAGCACACCTGAAAGAAAA+AGG 0.345967 7_4:+12281270 None:intergenic
GGAGATAAAGAAAGTAATTC+AGG 0.354220 7_4:+12278250 None:intergenic
GTGGGACTTATTATTATTGT+TGG 0.379448 7_4:-12278134 Msa1140540:three_prime_UTR
CCAATCTTTAACATTATTTG+TGG 0.386735 7_4:+12278288 None:intergenic
CCACAAATAATGTTAAAGAT+TGG 0.389223 7_4:-12278288 Msa1140540:three_prime_UTR
GTGAAGCATGTAACACATAT+TGG 0.392648 7_4:-12278328 Msa1140540:three_prime_UTR
AACTATTATTGTTAATTTGA+GGG 0.395391 7_4:+12281370 None:intergenic
TGAGGAGATGGAACCAGATA+TGG 0.397227 7_4:-12278371 Msa1140540:three_prime_UTR
GTAACACATATTGGACTTGA+TGG 0.403212 7_4:-12278319 Msa1140540:three_prime_UTR
CCTGCAGCTACATTAGGCTT+TGG 0.406315 7_4:+12281014 None:intergenic
CAACTATTATTGTTAATTTG+AGG 0.414083 7_4:+12281369 None:intergenic
CAATGAGTGGTTGGTGAGCT+TGG 0.421221 7_4:+12278191 None:intergenic
CACAAATAATGTTAAAGATT+GGG 0.428541 7_4:-12278287 Msa1140540:three_prime_UTR
AGAAGAAATGAGAAATCATA+TGG 0.448869 7_4:-12281310 Msa1140540:exon
TGGAACCAGATATGGAAATA+GGG 0.449151 7_4:-12278363 Msa1140540:three_prime_UTR
TAAAGATTGGGACAATTTGA+AGG 0.461704 7_4:-12278275 Msa1140540:three_prime_UTR
TGTATGCCTGCAGCTACATT+AGG 0.488754 7_4:+12281008 None:intergenic
AAGAGTTATCAATGAGTGGT+TGG 0.512846 7_4:+12278182 None:intergenic
AATGAGTGGTTGGTGAGCTT+GGG 0.519534 7_4:+12278192 None:intergenic
ATTTGAAATATTTGTTTGCA+AGG 0.525428 7_4:-12281104 Msa1140540:CDS
TGTTTGCAAGGAAGACAAGA+AGG 0.535313 7_4:-12281092 Msa1140540:CDS
CCAAAGCCTAATGTAGCTGC+AGG 0.535602 7_4:-12281014 Msa1140540:exon
CAGGCATACAGAGATTGATC+AGG 0.545062 7_4:-12280995 Msa1140540:three_prime_UTR
AAAGCAATTTGAATTGGCCA+TGG 0.548884 7_4:-12278218 Msa1140540:three_prime_UTR
TAACACATATTGGACTTGAT+GGG 0.552869 7_4:-12278318 Msa1140540:three_prime_UTR
TTGGTGAGCTTGGGTAGCCA+TGG 0.554788 7_4:+12278201 None:intergenic
GGAGAAGAGTTATCAATGAG+TGG 0.571021 7_4:+12278178 None:intergenic
GTTACATGCTTCACATCCGT+TGG 0.572507 7_4:+12278337 None:intergenic
GATGATAATGATGATGATGA+TGG 0.588201 7_4:-12278079 Msa1140540:three_prime_UTR
TATTATTGTTAATTTGAGGG+AGG 0.623153 7_4:+12281373 None:intergenic
GTGTGCTTCCAATTCAAGTG+TGG 0.660727 7_4:-12281256 Msa1140540:CDS
TATGGAAATAGGGTATCCAA+CGG 0.670674 7_4:-12278353 Msa1140540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATAAAAATGCTTTTAA+AGG - chr7_4:12280676-12280695 Msa1140540:intron 10.0%
!! TTATTCATATATTTGTATTA+TGG - chr7_4:12280836-12280855 Msa1140540:intron 10.0%
!!! AAGTATTTTTAATTACATTT+TGG + chr7_4:12281205-12281224 None:intergenic 10.0%
!!! AACTATTATTGTTAATTTGA+GGG + chr7_4:12277992-12278011 None:intergenic 15.0%
!!! ATTTTTCTTTCTTTAGTTAT+TGG - chr7_4:12278224-12278243 Msa1140540:three_prime_UTR 15.0%
!!! TACTTAATTTGATTATATGT+CGG + chr7_4:12278528-12278547 None:intergenic 15.0%
!!! TTATTTTTTACAAATGAAGA+AGG - chr7_4:12280086-12280105 Msa1140540:intron 15.0%
!! ATACAAATATATGAATAAGT+GGG + chr7_4:12280834-12280853 None:intergenic 15.0%
!! AATACAAATATATGAATAAG+TGG + chr7_4:12280835-12280854 None:intergenic 15.0%
!! AATGTAATTAAAAATACTTG+TGG - chr7_4:12281206-12281225 Msa1140540:CDS 15.0%
!! ATGTAATTAAAAATACTTGT+GGG - chr7_4:12281207-12281226 Msa1140540:CDS 15.0%
!!! TATCATGAATTTTAATTGTA+TGG + chr7_4:12281340-12281359 None:intergenic 15.0%
!!! CAACTATTATTGTTAATTTG+AGG + chr7_4:12277993-12278012 None:intergenic 20.0%
!! TATATACACCAACAAAAAAT+TGG - chr7_4:12278022-12278041 Msa1140540:three_prime_UTR 20.0%
!! ATATACACCAACAAAAAATT+GGG - chr7_4:12278023-12278042 Msa1140540:three_prime_UTR 20.0%
!!! ATTTGAAATATTTGTTTGCA+AGG - chr7_4:12278255-12278274 Msa1140540:three_prime_UTR 20.0%
!!! TCTTTACATCTTTTTATTGT+TGG - chr7_4:12278447-12278466 Msa1140540:intron 20.0%
!!! AATTTGTTTTTGTTTGTACA+TGG - chr7_4:12278481-12278500 Msa1140540:intron 20.0%
!!! ACTTAATTTGATTATATGTC+GGG + chr7_4:12278527-12278546 None:intergenic 20.0%
!! TTTGATTAGCAATAATAGTT+TGG - chr7_4:12278633-12278652 Msa1140540:intron 20.0%
!!! AATAATAGTTTGGAACAATT+GGG - chr7_4:12278643-12278662 Msa1140540:intron 20.0%
!!! CATTGGTATACAATTTATTT+TGG - chr7_4:12279841-12279860 Msa1140540:intron 20.0%
!! AATAAGAAGTAAGAAAAACA+AGG + chr7_4:12279912-12279931 None:intergenic 20.0%
!!! TTGTTTTTCTTACTTCTTAT+TGG - chr7_4:12279911-12279930 Msa1140540:intron 20.0%
!! TAGCTAAGTTTATAACTTTA+TGG - chr7_4:12280241-12280260 Msa1140540:intron 20.0%
!! ATCAAAGTTTCAATACAATT+GGG + chr7_4:12280515-12280534 None:intergenic 20.0%
!! AATCAAAGTTTCAATACAAT+TGG + chr7_4:12280516-12280535 None:intergenic 20.0%
!!! TTTTCTCTCAAAAAACTTTA+GGG - chr7_4:12280560-12280579 Msa1140540:intron 20.0%
!!! ATCGTTTTAATTTTTTAGCT+CGG + chr7_4:12280590-12280609 None:intergenic 20.0%
!! CACAAATAATGTTAAAGATT+GGG - chr7_4:12281072-12281091 Msa1140540:CDS 20.0%
!!! GTTGATAATGATGTTTTTAT+AGG - chr7_4:12281302-12281321 Msa1140540:CDS 20.0%
!!! TTCTAAACCCAATTTTTTGT+TGG + chr7_4:12278033-12278052 None:intergenic 25.0%
! AGAAGAAATGAGAAATCATA+TGG - chr7_4:12278049-12278068 Msa1140540:three_prime_UTR 25.0%
! CAACCAAAATCAAGAAAAAA+AGG - chr7_4:12278301-12278320 Msa1140540:three_prime_UTR 25.0%
!!! AGACCTTTTTTTCTTGATTT+TGG + chr7_4:12278307-12278326 None:intergenic 25.0%
!! CAATAATAGTTTGGAACAAT+TGG - chr7_4:12278642-12278661 Msa1140540:intron 25.0%
!!! TCTTTTAAAAAAAATTCCGC+TGG - chr7_4:12279615-12279634 Msa1140540:intron 25.0%
!!! CTTTTAAAAAAAATTCCGCT+GGG - chr7_4:12279616-12279635 Msa1140540:intron 25.0%
!!! TTTTAAAAAAAATTCCGCTG+GGG - chr7_4:12279617-12279636 Msa1140540:intron 25.0%
! GATCCATTTCAAATAAATTG+TGG + chr7_4:12279697-12279716 None:intergenic 25.0%
! AAAAAATGGGTCAATTAAAG+TGG + chr7_4:12279732-12279751 None:intergenic 25.0%
!!! TAATTGACCCATTTTTTAGT+AGG - chr7_4:12279735-12279754 Msa1140540:intron 25.0%
!! AGTTATGAAGGTAATTTTTG+GGG + chr7_4:12279819-12279838 None:intergenic 25.0%
!! CAGTTATGAAGGTAATTTTT+GGG + chr7_4:12279820-12279839 None:intergenic 25.0%
!! ACAGTTATGAAGGTAATTTT+TGG + chr7_4:12279821-12279840 None:intergenic 25.0%
! TCAACAAATTTGTCATCAAA+TGG + chr7_4:12279886-12279905 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr7_4:12279924-12279943 Msa1140540:intron 25.0%
! AAAACAATGGAGAGAAAAAA+AGG - chr7_4:12279937-12279956 Msa1140540:intron 25.0%
!!! TTGTTAGATTTTTTCGAAGA+AGG - chr7_4:12280053-12280072 Msa1140540:intron 25.0%
!!! TGTTAGATTTTTTCGAAGAA+GGG - chr7_4:12280054-12280073 Msa1140540:intron 25.0%
! CTTCAAAATCCATATTATCA+AGG + chr7_4:12280283-12280302 None:intergenic 25.0%
! GGTATATGAAAATAAATAGC+GGG + chr7_4:12280494-12280513 None:intergenic 25.0%
! GGGTATATGAAAATAAATAG+CGG + chr7_4:12280495-12280514 None:intergenic 25.0%
!! CTTTTCTCTCAAAAAACTTT+AGG - chr7_4:12280559-12280578 Msa1140540:intron 25.0%
!!! TCGTTTTAATTTTTTAGCTC+GGG + chr7_4:12280589-12280608 None:intergenic 25.0%
! AATGGTAAAAAAAATCATCC+AGG + chr7_4:12280802-12280821 None:intergenic 25.0%
! ATAAGTGGGATTGAAATAAA+TGG + chr7_4:12280820-12280839 None:intergenic 25.0%
!! AGTTTACAAAAAGCATATTG+AGG - chr7_4:12280970-12280989 Msa1140540:three_prime_UTR 25.0%
! CCAATCTTTAACATTATTTG+TGG + chr7_4:12281074-12281093 None:intergenic 25.0%
! CCACAAATAATGTTAAAGAT+TGG - chr7_4:12281071-12281090 Msa1140540:CDS 25.0%
! TCAAATTGCTTTAACGTAAT+TGG + chr7_4:12281133-12281152 None:intergenic 25.0%
! TACGTTAAAGCAATTTGAAT+TGG - chr7_4:12281135-12281154 Msa1140540:CDS 25.0%
! CATGATATTTGTAACTTCTT+TGG - chr7_4:12281353-12281372 Msa1140540:five_prime_UTR 25.0%
! TAGTTCTTCCTTTTTCTTTC+AGG - chr7_4:12278081-12278100 Msa1140540:three_prime_UTR 30.0%
!! AAACGTTGAAATAGCTTTAG+AGG + chr7_4:12278192-12278211 None:intergenic 30.0%
ATCAAGAAAAAAAGGTCTTC+TGG - chr7_4:12278309-12278328 Msa1140540:three_prime_UTR 30.0%
AGTAGCCAAAGAGTTAATAA+GGG - chr7_4:12279224-12279243 Msa1140540:intron 30.0%
CTTATCCCTTATTAACTCTT+TGG + chr7_4:12279232-12279251 None:intergenic 30.0%
! CGAGTAAACATTTTATAACG+TGG - chr7_4:12279419-12279438 Msa1140540:intron 30.0%
!!! GTTTTTTTTTCAACTGTCGT+CGG - chr7_4:12279494-12279513 Msa1140540:intron 30.0%
AACGATGATTAACTGTCATT+GGG - chr7_4:12279588-12279607 Msa1140540:intron 30.0%
ACGCCACAATTTATTTGAAA+TGG - chr7_4:12279691-12279710 Msa1140540:intron 30.0%
CTCATCTCCTACTAAAAAAT+GGG + chr7_4:12279745-12279764 None:intergenic 30.0%
ACTCATCTCCTACTAAAAAA+TGG + chr7_4:12279746-12279765 None:intergenic 30.0%
ATTACCTTCATAACTGTCAT+TGG - chr7_4:12279824-12279843 Msa1140540:intron 30.0%
TATACCAATGACAGTTATGA+AGG + chr7_4:12279831-12279850 None:intergenic 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr7_4:12280009-12280028 None:intergenic 30.0%
!! AGGCATAATTTGTTAGAAGT+CGG - chr7_4:12280106-12280125 Msa1140540:intron 30.0%
TATTATCAAGGTGCATATCA+CGG + chr7_4:12280271-12280290 None:intergenic 30.0%
! TGATATGCACCTTGATAATA+TGG - chr7_4:12280271-12280290 Msa1140540:intron 30.0%
TAACACATATTGGACTTGAT+GGG - chr7_4:12281041-12281060 Msa1140540:CDS 30.0%
TAAAGATTGGGACAATTTGA+AGG - chr7_4:12281084-12281103 Msa1140540:CDS 30.0%
GGAGATAAAGAAAGTAATTC+AGG + chr7_4:12281112-12281131 None:intergenic 30.0%
GTGGGACTTATTATTATTGT+TGG - chr7_4:12281225-12281244 Msa1140540:CDS 30.0%
! GATGATAATGATGATGATGA+TGG - chr7_4:12281280-12281299 Msa1140540:CDS 30.0%
TCCAATTCAAGTGTGGAATT+AGG - chr7_4:12278110-12278129 Msa1140540:three_prime_UTR 35.0%
ACCTAATTCCACACTTGAAT+TGG + chr7_4:12278114-12278133 None:intergenic 35.0%
TGGGCATATCAATGAACAAA+TGG - chr7_4:12278662-12278681 Msa1140540:intron 35.0%
GGAAATTAGATAGAGAGATG+TGG - chr7_4:12278683-12278702 Msa1140540:intron 35.0%
! ACTCGTTGGTTGAGTTTATT+AGG + chr7_4:12278736-12278755 None:intergenic 35.0%
AACCAACGAGTTTGTGAAAA+AGG - chr7_4:12278745-12278764 Msa1140540:intron 35.0%
TTCAACCATCTGATAGCAAA+CGG - chr7_4:12278899-12278918 Msa1140540:intron 35.0%
ATGTGTATTAGAGACGATGA+AGG + chr7_4:12278998-12279017 None:intergenic 35.0%
CACTTCTAACTCTCTATGTT+CGG - chr7_4:12279067-12279086 Msa1140540:intron 35.0%
GTTAGAATCTACTCTTGAGT+TGG + chr7_4:12279162-12279181 None:intergenic 35.0%
ACTATAACAATATGCGAGAG+GGG + chr7_4:12279184-12279203 None:intergenic 35.0%
CACTATAACAATATGCGAGA+GGG + chr7_4:12279185-12279204 None:intergenic 35.0%
ACACTATAACAATATGCGAG+AGG + chr7_4:12279186-12279205 None:intergenic 35.0%
GAGTAGCCAAAGAGTTAATA+AGG - chr7_4:12279223-12279242 Msa1140540:intron 35.0%
GAACGATGATTAACTGTCAT+TGG - chr7_4:12279587-12279606 Msa1140540:intron 35.0%
AGAGAAAAAAAGGAAGAGAG+AGG - chr7_4:12279947-12279966 Msa1140540:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr7_4:12280004-12280023 Msa1140540:intron 35.0%
ATTATCAAGGTGCATATCAC+GGG + chr7_4:12280270-12280289 None:intergenic 35.0%
CACAAAAGATGCTCTTTACT+CGG - chr7_4:12280316-12280335 Msa1140540:intron 35.0%
AAAATAATAATGCACGTGCC+TGG - chr7_4:12280781-12280800 Msa1140540:intron 35.0%
! CAAAAAGCATATTGAGGAGA+TGG - chr7_4:12280976-12280995 Msa1140540:three_prime_UTR 35.0%
ATGGAACCAGATATGGAAAT+AGG - chr7_4:12280995-12281014 Msa1140540:three_prime_UTR 35.0%
TGGAACCAGATATGGAAATA+GGG - chr7_4:12280996-12281015 Msa1140540:three_prime_UTR 35.0%
! TATGGAAATAGGGTATCCAA+CGG - chr7_4:12281006-12281025 Msa1140540:three_prime_UTR 35.0%
GTGAAGCATGTAACACATAT+TGG - chr7_4:12281031-12281050 Msa1140540:CDS 35.0%
GTAACACATATTGGACTTGA+TGG - chr7_4:12281040-12281059 Msa1140540:CDS 35.0%
AAAGCAATTTGAATTGGCCA+TGG - chr7_4:12281141-12281160 Msa1140540:CDS 35.0%
AAGAGTTATCAATGAGTGGT+TGG + chr7_4:12281180-12281199 None:intergenic 35.0%
GAAGCACACCTGAAAGAAAA+AGG + chr7_4:12278092-12278111 None:intergenic 40.0%
TGTTTGCAAGGAAGACAAGA+AGG - chr7_4:12278267-12278286 Msa1140540:three_prime_UTR 40.0%
!! GTCCTTTTTCACAAACTCGT+TGG + chr7_4:12278750-12278769 None:intergenic 40.0%
CGTAGAGATGAATCTGAACT+TGG + chr7_4:12278809-12278828 None:intergenic 40.0%
!! GTTTGCTATCAGATGGTTGA+AGG + chr7_4:12278900-12278919 None:intergenic 40.0%
!! TCCTTCATCAGCTTTTAGGA+TGG - chr7_4:12278937-12278956 Msa1140540:intron 40.0%
!!! CCTTCATCAGCTTTTAGGAT+GGG - chr7_4:12278938-12278957 Msa1140540:intron 40.0%
ATATTGATGCAGCTTTCTCC+TGG + chr7_4:12279045-12279064 None:intergenic 40.0%
TTGAAATGGATCGAGTCCAA+TGG - chr7_4:12279705-12279724 Msa1140540:intron 40.0%
TGAAATGGATCGAGTCCAAT+GGG - chr7_4:12279706-12279725 Msa1140540:intron 40.0%
GTAATACTATCACTGCTTCC+CGG - chr7_4:12280363-12280382 Msa1140540:intron 40.0%
GGATACCCTATTTCCATATC+TGG + chr7_4:12281004-12281023 None:intergenic 40.0%
GGAGAAGAGTTATCAATGAG+TGG + chr7_4:12281184-12281203 None:intergenic 40.0%
GTGTGCTTCCAATTCAAGTG+TGG - chr7_4:12278103-12278122 Msa1140540:three_prime_UTR 45.0%
TGTATGCCTGCAGCTACATT+AGG + chr7_4:12278354-12278373 None:intergenic 45.0%
CAGGCATACAGAGATTGATC+AGG - chr7_4:12278364-12278383 Msa1140540:three_prime_UTR 45.0%
CGAGTTTGTGAAAAAGGACG+AGG - chr7_4:12278751-12278770 Msa1140540:intron 45.0%
ACCATCTGATAGCAAACGGT+AGG - chr7_4:12278903-12278922 Msa1140540:intron 45.0%
CCTAAAAGCTGATGAAGGAG+AGG + chr7_4:12278936-12278955 None:intergenic 45.0%
! CCTCTCCTTCATCAGCTTTT+AGG - chr7_4:12278933-12278952 Msa1140540:intron 45.0%
CCCATCCTAAAAGCTGATGA+AGG + chr7_4:12278941-12278960 None:intergenic 45.0%
TCAAGTAGTAGAGTGGGGAT+TGG + chr7_4:12279022-12279041 None:intergenic 45.0%
TCCTGGTCAAGTAGTAGAGT+GGG + chr7_4:12279028-12279047 None:intergenic 45.0%
!! GATGTGTTGCCGCTTTATTG+CGG - chr7_4:12279119-12279138 Msa1140540:intron 45.0%
GCAAACATGCCGCAATAAAG+CGG + chr7_4:12279131-12279150 None:intergenic 45.0%
AATTCCGCTGGGGTATGTTT+AGG - chr7_4:12279627-12279646 Msa1140540:intron 45.0%
TTCTCCTAAACATACCCCAG+CGG + chr7_4:12279634-12279653 None:intergenic 45.0%
GGTCAATTAAAGTGGCCCAT+TGG + chr7_4:12279724-12279743 None:intergenic 45.0%
GACTTCAGTTATGTCTTCCC+GGG + chr7_4:12280342-12280361 None:intergenic 45.0%
CGACTTCAGTTATGTCTTCC+CGG + chr7_4:12280343-12280362 None:intergenic 45.0%
CGGGAAGACATAACTGAAGT+CGG - chr7_4:12280341-12280360 Msa1140540:intron 45.0%
TGGTGTCTCATACTCTTGCA+TGG - chr7_4:12280447-12280466 Msa1140540:intron 45.0%
GGTGTCTCATACTCTTGCAT+GGG - chr7_4:12280448-12280467 Msa1140540:intron 45.0%
AGCGGGACTAACAAGAAATG+TGG + chr7_4:12280477-12280496 None:intergenic 45.0%
TGAGGAGATGGAACCAGATA+TGG - chr7_4:12280988-12281007 Msa1140540:three_prime_UTR 45.0%
GTTACATGCTTCACATCCGT+TGG + chr7_4:12281025-12281044 None:intergenic 45.0%
!! AATGAGTGGTTGGTGAGCTT+GGG + chr7_4:12281170-12281189 None:intergenic 45.0%
!! TTTATTCAATTAAAATAATA+AGG - chr7_4:12279296-12279315 Msa1140540:intron 5.0%
CCTGCAGCTACATTAGGCTT+TGG + chr7_4:12278348-12278367 None:intergenic 50.0%
CCAAAGCCTAATGTAGCTGC+AGG - chr7_4:12278345-12278364 Msa1140540:three_prime_UTR 50.0%
! TGCTCATAGCCTTGCTAGAG+CGG + chr7_4:12278709-12278728 None:intergenic 50.0%
!! GCCTACCGTTTGCTATCAGA+TGG + chr7_4:12278907-12278926 None:intergenic 50.0%
GCTGATGAAGGAGAGGCTTT+AGG + chr7_4:12278929-12278948 None:intergenic 50.0%
CCTGGTCAAGTAGTAGAGTG+GGG + chr7_4:12279027-12279046 None:intergenic 50.0%
CTCCTGGTCAAGTAGTAGAG+TGG + chr7_4:12279029-12279048 None:intergenic 50.0%
AAGATGCTCTTTACTCGGCC+CGG - chr7_4:12280321-12280340 Msa1140540:intron 50.0%
ACTTGGACGAGAGCAAAGAC+CGG + chr7_4:12280385-12280404 None:intergenic 50.0%
CGTCCAAGTATGCCAACTCT+CGG - chr7_4:12280396-12280415 Msa1140540:intron 50.0%
GTCCAAGTATGCCAACTCTC+GGG - chr7_4:12280397-12280416 Msa1140540:intron 50.0%
AACAAACTCCACCCGAGAGT+TGG + chr7_4:12280411-12280430 None:intergenic 50.0%
! ACTCTCGGGTGGAGTTTGTT+CGG - chr7_4:12280411-12280430 Msa1140540:intron 50.0%
TGTTCGGCGACAAGCTAATG+TGG - chr7_4:12280427-12280446 Msa1140540:intron 50.0%
!! CAATGAGTGGTTGGTGAGCT+TGG + chr7_4:12281171-12281190 None:intergenic 50.0%
CCCCACTCTACTACTTGACC+AGG - chr7_4:12279024-12279043 Msa1140540:intron 55.0%
AGATGCTCTTTACTCGGCCC+GGG - chr7_4:12280322-12280341 Msa1140540:intron 55.0%
CTTGGACGAGAGCAAAGACC+GGG + chr7_4:12280384-12280403 None:intergenic 55.0%
CACCCGAGAGTTGGCATACT+TGG + chr7_4:12280402-12280421 None:intergenic 55.0%
CAAGTATGCCAACTCTCGGG+TGG - chr7_4:12280400-12280419 Msa1140540:intron 55.0%
TTGGTGAGCTTGGGTAGCCA+TGG + chr7_4:12281161-12281180 None:intergenic 55.0%
GAGATGTGGCCGCTCTAGCA+AGG - chr7_4:12278697-12278716 Msa1140540:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 12277989 12281392 12277989 ID=Msa1140540;Name=Msa1140540
chr7_4 mRNA 12277989 12281392 12277989 ID=Msa1140540-mRNA-1;Parent=Msa1140540;Name=Msa1140540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|0|0|2|480|99
chr7_4 exon 12277989 12278409 12277989 ID=Msa1140540-mRNA-1:exon:3001;Parent=Msa1140540-mRNA-1
chr7_4 exon 12280967 12281392 12280967 ID=Msa1140540-mRNA-1:exon:3000;Parent=Msa1140540-mRNA-1
chr7_4 five_prime_UTR 12281326 12281392 12281326 ID=Msa1140540-mRNA-1:five_prime_utr;Parent=Msa1140540-mRNA-1
chr7_4 CDS 12281026 12281325 12281026 ID=Msa1140540-mRNA-1:cds;Parent=Msa1140540-mRNA-1
chr7_4 three_prime_UTR 12280967 12281025 12280967 ID=Msa1140540-mRNA-1:three_prime_utr;Parent=Msa1140540-mRNA-1
chr7_4 three_prime_UTR 12277989 12278409 12277989 ID=Msa1140540-mRNA-1:three_prime_utr;Parent=Msa1140540-mRNA-1
Gene Sequence

>Msa1140540

ATGAGAAATCATATGGAGAGATTAGTAGTTCTTCCTTTTTCTTTCAGGTGTGCTTCCAATTCAAGTGTGGAATTAGGTGAACAAAAAGTGCAAAAACTAGATTCAAAAGACTCAATTGATTCAAGTAGTTTCTCCTCTAAAGCTATTTCAACGTTTCTATATTCATTCATTTTTCTTTCTTTAGTTATTGGAGTTCGTAATTTGAAATATTTGTTTGCAAGGAAGACAAGAAGGACAAGTCATCACAACCAAAATCAAGAAAAAAAGGTCTTCTGGATTTTTTGTTCTACCAAAGCCTAA
Protein sequence

>Msa1140540

MRNHMERLVVLPFSFRCASNSSVELGEQKVQKLDSKDSIDSSSFSSKAISTFLYSFIFLSLVIGVRNLKYLFARKTRRTSHHNQNQEKKVFWIFCSTKA*