AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116220 MtrunA17_Chr7g0259821 94.855 311 8 2 1 311 1 303 0.0 593
Msa1116220 MtrunA17_Chr8g0334431 48.837 129 64 1 166 292 169 297 3.73e-30 116
Msa1116220 MtrunA17_Chr7g0245331 49.606 127 59 2 167 288 225 351 6.56e-29 114
Msa1116220 MtrunA17_Chr3g0108551 35.317 252 123 8 57 293 149 375 5.84e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116220 AT4G02800.1 54.799 323 131 6 1 312 1 319 5.38e-102 302
Msa1116220 AT5G01970.1 33.455 275 158 6 26 283 39 305 9.30e-33 124
Msa1116220 AT5G01970.2 37.441 211 120 4 77 283 6 208 1.07e-32 122
Msa1116220 AT1G30050.1 55.556 108 47 1 168 274 183 290 6.83e-31 120
Msa1116220 AT2G30530.1 53.271 107 50 0 168 274 226 332 4.85e-23 98.2

Find 82 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAATGAATCTGAGATTT+TGG 0.065777 7_3:-63842038 None:intergenic
AAGTGAATGTTTAATAAATT+TGG 0.149873 7_3:-63844274 None:intergenic
ACAGAGTCACAAACAGAAAA+TGG 0.225910 7_3:+63842792 Msa1116220:CDS
CTTCAGCTGGAAGCACTTCT+TGG 0.294756 7_3:+63843636 Msa1116220:CDS
CCATAGGGTGCAAGAGAATT+GGG 0.312480 7_3:+63842621 Msa1116220:intron
TCCATAGGGTGCAAGAGAAT+TGG 0.320035 7_3:+63842620 Msa1116220:intron
TAATTTGGACAATGCCTTGC+TGG 0.350274 7_3:+63842150 Msa1116220:CDS
AATGTTTAATAAATTTGGTT+TGG 0.356208 7_3:-63844269 None:intergenic
AGAACCATTGTCACATTAGT+AGG 0.357230 7_3:-63844066 None:intergenic
CATCTTCCGATAAACGCTTC+TGG 0.357963 7_3:+63841966 Msa1116220:CDS
ATGTTTAATAAATTTGGTTT+GGG 0.383873 7_3:-63844268 None:intergenic
AAAATTTGGTTTGCATGAAA+TGG 0.390413 7_3:-63843968 None:intergenic
CACCAGAGAACTTGTAGAAA+TGG 0.394974 7_3:-63843913 None:intergenic
CGAAACCGTCACGCAATCTT+CGG 0.399997 7_3:-63843078 None:intergenic
GATTCGTTGTTGCTCATAAG+AGG 0.407447 7_3:+63842088 Msa1116220:CDS
TTGCGTGACGGTTTCGCTAA+AGG 0.407989 7_3:+63843085 Msa1116220:CDS
CAGAGTCACAAACAGAAAAT+GGG 0.420249 7_3:+63842793 Msa1116220:CDS
TTTGCAGATTGCAGTTTCAA+TGG 0.433732 7_3:+63842961 Msa1116220:intron
TTCTCCTCTTCACATCAAAC+AGG 0.442956 7_3:+63841814 Msa1116220:CDS
AACCATTTCTACAAGTTCTC+TGG 0.444144 7_3:+63843911 Msa1116220:three_prime_UTR
AGAAGCAGAGAAAGAGAAAG+AGG 0.454038 7_3:+63842716 Msa1116220:CDS
TTCATCCCTTGTCTCTTCTC+CGG 0.455453 7_3:-63843826 None:intergenic
TCTCCACCACGATCAATTGC+CGG 0.462348 7_3:+63843807 Msa1116220:CDS
CAGGCCTGAGGAAGATGATC+TGG 0.475023 7_3:+63843111 Msa1116220:CDS
CCACCAGCTGGTGAAGGCAT+TGG 0.478762 7_3:-63843707 None:intergenic
TGAAAGAGGAAAACGATTGA+AGG 0.478931 7_3:+63842063 Msa1116220:CDS
AGAAGTCCAAGCACATTCCT+TGG 0.491643 7_3:-63843782 None:intergenic
AGTGCTCCAGAAGCGTTTAT+CGG 0.496763 7_3:-63841972 None:intergenic
ACGGTTTCGCTAAAGGAGTC+AGG 0.501339 7_3:+63843092 Msa1116220:CDS
GGTGTAGGTGAGGCTTCAGC+TGG 0.502604 7_3:+63843623 Msa1116220:intron
CTTACCAGATCATCTTCCTC+AGG 0.509130 7_3:-63843115 None:intergenic
AATATATCAGTTAATGTGGG+TGG 0.516844 7_3:-63842648 None:intergenic
AAACCAATGCCTTCACCAGC+TGG 0.518473 7_3:+63843704 Msa1116220:CDS
AGACTGTCACATTATAATAG+TGG 0.519320 7_3:-63844123 None:intergenic
CAGAAGCGTTTATCGGAAGA+TGG 0.528157 7_3:-63841965 None:intergenic
GTAGAAATGGTTACTAGAGA+TGG 0.530230 7_3:-63843900 None:intergenic
GATTCATTACAGAATGAAAG+AGG 0.535883 7_3:+63842049 Msa1116220:CDS
TTACAGAGGGGATGTTATGA+TGG 0.536525 7_3:-63843997 None:intergenic
GGTTACTAGAGATGGTTCCT+TGG 0.537693 7_3:-63843892 None:intergenic
GGAAGCACTTCTTGGTGAGA+AGG 0.546681 7_3:+63843644 Msa1116220:CDS
AGTCATCCAAGGAATGTGCT+TGG 0.547639 7_3:+63843776 Msa1116220:CDS
TTTGAATATATCAGTTAATG+TGG 0.556491 7_3:-63842652 None:intergenic
AAAACCTGTTTGATGTGAAG+AGG 0.562179 7_3:-63841818 None:intergenic
TTGAATATATCAGTTAATGT+GGG 0.565772 7_3:-63842651 None:intergenic
AGTCAAAGCAAGGAGTAAAG+AGG 0.574305 7_3:+63842739 Msa1116220:CDS
GAAGAGACAAGGGATGAAGA+TGG 0.575725 7_3:+63843831 Msa1116220:CDS
ATTCGTTGTTGCTCATAAGA+GGG 0.576596 7_3:+63842089 Msa1116220:CDS
ATTTGCAGCATCATTACAGA+GGG 0.577586 7_3:-63844010 None:intergenic
TGTTTGATGTGAAGAGGAGA+AGG 0.578043 7_3:-63841812 None:intergenic
CAATTGCCGGAGAAGAGACA+AGG 0.585854 7_3:+63843820 Msa1116220:CDS
AAACACCATGACAACCTCGT+TGG 0.586010 7_3:+63841778 Msa1116220:exon
CATAGGGTGCAAGAGAATTG+GGG 0.596960 7_3:+63842622 Msa1116220:intron
AGTGAGATAATCTTAACTAA+CGG 0.602190 7_3:-63841726 None:intergenic
GATACTCCACCAGCTGGTGA+AGG 0.606126 7_3:-63843713 None:intergenic
TCTCCGGCAATTGATCGTGG+TGG 0.606421 7_3:-63843810 None:intergenic
TCTTCTCCGGCAATTGATCG+TGG 0.606721 7_3:-63843813 None:intergenic
TCATATGAGCAAGTCATCCA+AGG 0.609790 7_3:+63843765 Msa1116220:CDS
AGAGTCACAAACAGAAAATG+GGG 0.611613 7_3:+63842794 Msa1116220:CDS
TTGCATGAAATGGTGATGGT+AGG 0.612666 7_3:-63843958 None:intergenic
CCAATGCCTTCACCAGCTGG+TGG 0.614590 7_3:+63843707 Msa1116220:CDS
TGGTTTGCATGAAATGGTGA+TGG 0.615131 7_3:-63843962 None:intergenic
TGTGTCCAACGAGGTTGTCA+TGG 0.617619 7_3:-63841783 None:intergenic
GCTCATAAGAGGGTTTGACT+CGG 0.617847 7_3:+63842099 Msa1116220:CDS
GAGAAAGAGGAGTCAAAGCA+AGG 0.618162 7_3:+63842729 Msa1116220:CDS
TGTGACAATGGTTCTAAATG+TGG 0.624512 7_3:+63844074 Msa1116220:three_prime_UTR
TCTTCCTACTAATGTGACAA+TGG 0.625282 7_3:+63844062 Msa1116220:three_prime_UTR
CGCTAAAGGAGTCAGGCCTG+AGG 0.629684 7_3:+63843099 Msa1116220:CDS
GTTGATGATACTCCACCAGC+TGG 0.633667 7_3:-63843719 None:intergenic
TGTAAAACTACTTACCAGCA+AGG 0.639818 7_3:-63842164 None:intergenic
ACATTATAATAGTGGCGGAG+TGG 0.655847 7_3:-63844115 None:intergenic
CTGTCACATTATAATAGTGG+CGG 0.659217 7_3:-63844120 None:intergenic
TATTTGCAGCATCATTACAG+AGG 0.660089 7_3:-63844011 None:intergenic
AATTGCCGGAGAAGAGACAA+GGG 0.670922 7_3:+63843821 Msa1116220:CDS
TCGGAAGATGGAGTGAACTG+AGG 0.679491 7_3:-63841953 None:intergenic
GAGAACCGAAGATTGCGTGA+CGG 0.684297 7_3:+63843073 Msa1116220:CDS
GAGAAGAACTATGAACACCA+AGG 0.704185 7_3:+63843875 Msa1116220:exon
GAGTCACAAACAGAAAATGG+GGG 0.707145 7_3:+63842795 Msa1116220:CDS
GAAGCGAGTCAATTCTACAA+CGG 0.721187 7_3:-63841997 None:intergenic
CTTGCTCATATGACTCAGAG+AGG 0.724039 7_3:-63843755 None:intergenic
AGGAGAAGCTGTGTCCAACG+AGG 0.737241 7_3:-63841792 None:intergenic
GACTCGCTTCTCGATAAACG+CGG 0.746002 7_3:+63842010 Msa1116220:CDS
TTTGCAGCATCATTACAGAG+GGG 0.746992 7_3:-63844009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACATTAATTAAT+TGG - chr7_3:63842222-63842241 None:intergenic 10.0%
!! GATTTATCTAGTTAAAAATT+TGG + chr7_3:63842488-63842507 Msa1116220:intron 15.0%
!!! TTTAGAATTTCATTGATTTT+AGG + chr7_3:63843552-63843571 Msa1116220:intron 15.0%
!!! ATCTCTTTTGTCTAATAATT+TGG + chr7_3:63842135-63842154 Msa1116220:CDS 20.0%
!!! TTTTAACCATATCAAAAAAG+CGG - chr7_3:63842303-63842322 None:intergenic 20.0%
!!! TTTTTCTTCTATATTTGAGA+CGG - chr7_3:63842452-63842471 None:intergenic 20.0%
!! ACTAAAAAATCTACTTTATC+CGG - chr7_3:63842566-63842585 None:intergenic 20.0%
!!! ATTCAGATTATTTTTCCATA+GGG + chr7_3:63842606-63842625 Msa1116220:intron 20.0%
!! TTGAATATATCAGTTAATGT+GGG - chr7_3:63842654-63842673 None:intergenic 20.0%
!! TTTGAATATATCAGTTAATG+TGG - chr7_3:63842655-63842674 None:intergenic 20.0%
!! TACTAGTTAGTAGATTATAT+TGG + chr7_3:63842901-63842920 Msa1116220:intron 20.0%
!! AATCTTAATCATATACCATA+TGG + chr7_3:63843148-63843167 Msa1116220:intron 20.0%
!!! TTCAAATTCTTTTAACCATA+TGG - chr7_3:63843166-63843185 None:intergenic 20.0%
!! ATTGTAATTAGACATTAGTT+AGG + chr7_3:63843266-63843285 Msa1116220:intron 20.0%
!! ATTAGTTCCATAATAAATTC+AGG - chr7_3:63843580-63843599 None:intergenic 20.0%
!! CTAAAAAAATATATCTTGCA+TGG + chr7_3:63844158-63844177 Msa1116220:three_prime_UTR 20.0%
! AGTGAGATAATCTTAACTAA+CGG - chr7_3:63841729-63841748 None:intergenic 25.0%
!!! ATAGTGATGTCTTTTTTTAG+AGG - chr7_3:63841851-63841870 None:intergenic 25.0%
!! TGTTTTCGTTTTATAACAAC+AGG + chr7_3:63841901-63841920 Msa1116220:intron 25.0%
!!! TGTAATGAATCTGAGATTTT+GGG - chr7_3:63842040-63842059 None:intergenic 25.0%
!! CTAGTGCTAATTAATGTTTT+TGG + chr7_3:63842194-63842213 Msa1116220:intron 25.0%
!!! TAATAACCGCTTTTTTGATA+TGG + chr7_3:63842294-63842313 Msa1116220:intron 25.0%
!!! TTTTTGTTTATATTCGAGAC+CGG + chr7_3:63842544-63842563 Msa1116220:intron 25.0%
!!! CATTCAGATTATTTTTCCAT+AGG + chr7_3:63842605-63842624 Msa1116220:intron 25.0%
! ATCAAGAAAGCAAAAAATGT+TGG + chr7_3:63842837-63842856 Msa1116220:intron 25.0%
! TTCTTAAAACAATTGCATTG+AGG - chr7_3:63843385-63843404 None:intergenic 25.0%
!!! GAATCATTGTTGATAACAAT+AGG + chr7_3:63843409-63843428 Msa1116220:intron 25.0%
! ATTATGGAACTAATCTTATG+TGG + chr7_3:63843586-63843605 Msa1116220:intron 25.0%
!!! AAAATTTGGTTTGCATGAAA+TGG - chr7_3:63843971-63843990 None:intergenic 25.0%
!! TATGATGGTGCTAAAAAATT+TGG - chr7_3:63843985-63844004 None:intergenic 25.0%
!!! ATGTCTTTTTTTAGAGGAAG+AGG - chr7_3:63841845-63841864 None:intergenic 30.0%
!! CTGTAATGAATCTGAGATTT+TGG - chr7_3:63842041-63842060 None:intergenic 30.0%
GATTCATTACAGAATGAAAG+AGG + chr7_3:63842049-63842068 Msa1116220:CDS 30.0%
AATATATCAGTTAATGTGGG+TGG - chr7_3:63842651-63842670 None:intergenic 30.0%
!! CTAGTACAATAGTTGATAAC+AGG - chr7_3:63842881-63842900 None:intergenic 30.0%
! TATATTGGTACTGAAGTTTG+TGG + chr7_3:63842916-63842935 Msa1116220:intron 30.0%
! TGTTTTATGCAAGAAAGATG+TGG + chr7_3:63843037-63843056 Msa1116220:CDS 30.0%
!! CACAGTTTTTCTCTAGAAAT+TGG + chr7_3:63843316-63843335 Msa1116220:intron 30.0%
!! TTTTTCTCTAGAAATTGGAG+TGG + chr7_3:63843321-63843340 Msa1116220:intron 30.0%
TATTCTCTTTGAACAATTCC+AGG - chr7_3:63843505-63843524 None:intergenic 30.0%
TTAGGAGCCTGAATTTATTA+TGG + chr7_3:63843570-63843589 Msa1116220:intron 30.0%
AACTAATCTTATGTGGATGA+TGG + chr7_3:63843593-63843612 Msa1116220:intron 30.0%
! CATCAGATTTGCATTTTCAT+TGG - chr7_3:63843679-63843698 None:intergenic 30.0%
! TTATTTTCTGCGGTAATACA+AGG - chr7_3:63844039-63844058 None:intergenic 30.0%
! AGGAAGATCATTATTTTCTG+CGG - chr7_3:63844049-63844068 None:intergenic 30.0%
AGACTGTCACATTATAATAG+TGG - chr7_3:63844126-63844145 None:intergenic 30.0%
AAAACCTGTTTGATGTGAAG+AGG - chr7_3:63841821-63841840 None:intergenic 35.0%
TGAAAGAGGAAAACGATTGA+AGG + chr7_3:63842063-63842082 Msa1116220:CDS 35.0%
ATTCGTTGTTGCTCATAAGA+GGG + chr7_3:63842089-63842108 Msa1116220:CDS 35.0%
TGTAAAACTACTTACCAGCA+AGG - chr7_3:63842167-63842186 None:intergenic 35.0%
ACAGAGTCACAAACAGAAAA+TGG + chr7_3:63842792-63842811 Msa1116220:CDS 35.0%
CAGAGTCACAAACAGAAAAT+GGG + chr7_3:63842793-63842812 Msa1116220:CDS 35.0%
AGAGTCACAAACAGAAAATG+GGG + chr7_3:63842794-63842813 Msa1116220:CDS 35.0%
TTTGCAGATTGCAGTTTCAA+TGG + chr7_3:63842961-63842980 Msa1116220:intron 35.0%
AACATCACTAACTCTTTCAC+AGG - chr7_3:63843195-63843214 None:intergenic 35.0%
ATTGGAGTGGTCTAGTTATT+TGG + chr7_3:63843334-63843353 Msa1116220:intron 35.0%
! TGTGTTGATCAATTTAGTCC+TGG + chr7_3:63843484-63843503 Msa1116220:intron 35.0%
GTAGAAATGGTTACTAGAGA+TGG - chr7_3:63843903-63843922 None:intergenic 35.0%
AACCATTTCTACAAGTTCTC+TGG + chr7_3:63843911-63843930 Msa1116220:three_prime_UTR 35.0%
ATTTGCAGCATCATTACAGA+GGG - chr7_3:63844013-63844032 None:intergenic 35.0%
TATTTGCAGCATCATTACAG+AGG - chr7_3:63844014-63844033 None:intergenic 35.0%
TCTTCCTACTAATGTGACAA+TGG + chr7_3:63844062-63844081 Msa1116220:three_prime_UTR 35.0%
AGAACCATTGTCACATTAGT+AGG - chr7_3:63844069-63844088 None:intergenic 35.0%
!! TGTGACAATGGTTCTAAATG+TGG + chr7_3:63844074-63844093 Msa1116220:three_prime_UTR 35.0%
CTGTCACATTATAATAGTGG+CGG - chr7_3:63844123-63844142 None:intergenic 35.0%
TGTTTGATGTGAAGAGGAGA+AGG - chr7_3:63841815-63841834 None:intergenic 40.0%
TTCTCCTCTTCACATCAAAC+AGG + chr7_3:63841814-63841833 Msa1116220:CDS 40.0%
GAAGCGAGTCAATTCTACAA+CGG - chr7_3:63842000-63842019 None:intergenic 40.0%
GATTCGTTGTTGCTCATAAG+AGG + chr7_3:63842088-63842107 Msa1116220:CDS 40.0%
TAATTTGGACAATGCCTTGC+TGG + chr7_3:63842150-63842169 Msa1116220:CDS 40.0%
AGAAGCAGAGAAAGAGAAAG+AGG + chr7_3:63842716-63842735 Msa1116220:CDS 40.0%
AGTCAAAGCAAGGAGTAAAG+AGG + chr7_3:63842739-63842758 Msa1116220:CDS 40.0%
GAGTCACAAACAGAAAATGG+GGG + chr7_3:63842795-63842814 Msa1116220:CDS 40.0%
! TATGTGGATGATGGTTTGTG+TGG + chr7_3:63843602-63843621 Msa1116220:intron 40.0%
TCATATGAGCAAGTCATCCA+AGG + chr7_3:63843765-63843784 Msa1116220:CDS 40.0%
GAGAAGAACTATGAACACCA+AGG + chr7_3:63843875-63843894 Msa1116220:exon 40.0%
CACCAGAGAACTTGTAGAAA+TGG - chr7_3:63843916-63843935 None:intergenic 40.0%
! CTCTGGTGAACTTTTGATGA+TGG + chr7_3:63843928-63843947 Msa1116220:three_prime_UTR 40.0%
!! TTGCATGAAATGGTGATGGT+AGG - chr7_3:63843961-63843980 None:intergenic 40.0%
! TGGTTTGCATGAAATGGTGA+TGG - chr7_3:63843965-63843984 None:intergenic 40.0%
TTACAGAGGGGATGTTATGA+TGG - chr7_3:63844000-63844019 None:intergenic 40.0%
TTTGCAGCATCATTACAGAG+GGG - chr7_3:63844012-63844031 None:intergenic 40.0%
! ACATTATAATAGTGGCGGAG+TGG - chr7_3:63844118-63844137 None:intergenic 40.0%
AAACACCATGACAACCTCGT+TGG + chr7_3:63841778-63841797 Msa1116220:exon 45.0%
!! CAGAAGCGTTTATCGGAAGA+TGG - chr7_3:63841968-63841987 None:intergenic 45.0%
CATCTTCCGATAAACGCTTC+TGG + chr7_3:63841966-63841985 Msa1116220:CDS 45.0%
!! AGTGCTCCAGAAGCGTTTAT+CGG - chr7_3:63841975-63841994 None:intergenic 45.0%
GCTCATAAGAGGGTTTGACT+CGG + chr7_3:63842099-63842118 Msa1116220:CDS 45.0%
TCCATAGGGTGCAAGAGAAT+TGG + chr7_3:63842620-63842639 Msa1116220:intron 45.0%
CCATAGGGTGCAAGAGAATT+GGG + chr7_3:63842621-63842640 Msa1116220:intron 45.0%
CATAGGGTGCAAGAGAATTG+GGG + chr7_3:63842622-63842641 Msa1116220:intron 45.0%
GAGAAAGAGGAGTCAAAGCA+AGG + chr7_3:63842729-63842748 Msa1116220:CDS 45.0%
CTTACCAGATCATCTTCCTC+AGG - chr7_3:63843118-63843137 None:intergenic 45.0%
CTGAGGAAGATGATCTGGTA+AGG + chr7_3:63843116-63843135 Msa1116220:intron 45.0%
! GATGATGGTTTGTGTGGTGT+AGG + chr7_3:63843608-63843627 Msa1116220:intron 45.0%
CTTGCTCATATGACTCAGAG+AGG - chr7_3:63843758-63843777 None:intergenic 45.0%
AGTCATCCAAGGAATGTGCT+TGG + chr7_3:63843776-63843795 Msa1116220:CDS 45.0%
AGAAGTCCAAGCACATTCCT+TGG - chr7_3:63843785-63843804 None:intergenic 45.0%
AATTGCCGGAGAAGAGACAA+GGG + chr7_3:63843821-63843840 Msa1116220:CDS 45.0%
TTCATCCCTTGTCTCTTCTC+CGG - chr7_3:63843829-63843848 None:intergenic 45.0%
GAAGAGACAAGGGATGAAGA+TGG + chr7_3:63843831-63843850 Msa1116220:CDS 45.0%
GGTTACTAGAGATGGTTCCT+TGG - chr7_3:63843895-63843914 None:intergenic 45.0%
TGTGTCCAACGAGGTTGTCA+TGG - chr7_3:63841786-63841805 None:intergenic 50.0%
TCGGAAGATGGAGTGAACTG+AGG - chr7_3:63841956-63841975 None:intergenic 50.0%
GACTCGCTTCTCGATAAACG+CGG + chr7_3:63842010-63842029 Msa1116220:CDS 50.0%
CCCAATTCTCTTGCACCCTA+TGG - chr7_3:63842624-63842643 None:intergenic 50.0%
GAGAACCGAAGATTGCGTGA+CGG + chr7_3:63843073-63843092 Msa1116220:CDS 50.0%
CGAAACCGTCACGCAATCTT+CGG - chr7_3:63843081-63843100 None:intergenic 50.0%
TTGCGTGACGGTTTCGCTAA+AGG + chr7_3:63843085-63843104 Msa1116220:CDS 50.0%
ACGGTTTCGCTAAAGGAGTC+AGG + chr7_3:63843092-63843111 Msa1116220:CDS 50.0%
! TGGTTTGTGTGGTGTAGGTG+AGG + chr7_3:63843613-63843632 Msa1116220:intron 50.0%
!! CTTCAGCTGGAAGCACTTCT+TGG + chr7_3:63843636-63843655 Msa1116220:CDS 50.0%
!! GGAAGCACTTCTTGGTGAGA+AGG + chr7_3:63843644-63843663 Msa1116220:CDS 50.0%
AAACCAATGCCTTCACCAGC+TGG + chr7_3:63843704-63843723 Msa1116220:CDS 50.0%
!! GTTGATGATACTCCACCAGC+TGG - chr7_3:63843722-63843741 None:intergenic 50.0%
TCTCCACCACGATCAATTGC+CGG + chr7_3:63843807-63843826 Msa1116220:CDS 50.0%
TCTTCTCCGGCAATTGATCG+TGG - chr7_3:63843816-63843835 None:intergenic 50.0%
CAATTGCCGGAGAAGAGACA+AGG + chr7_3:63843820-63843839 Msa1116220:CDS 50.0%
AGGAGAAGCTGTGTCCAACG+AGG - chr7_3:63841795-63841814 None:intergenic 55.0%
CAGGCCTGAGGAAGATGATC+TGG + chr7_3:63843111-63843130 Msa1116220:CDS 55.0%
GATACTCCACCAGCTGGTGA+AGG - chr7_3:63843716-63843735 None:intergenic 55.0%
TCTCCGGCAATTGATCGTGG+TGG - chr7_3:63843813-63843832 None:intergenic 55.0%
CGCTAAAGGAGTCAGGCCTG+AGG + chr7_3:63843099-63843118 Msa1116220:CDS 60.0%
GGTGTAGGTGAGGCTTCAGC+TGG + chr7_3:63843623-63843642 Msa1116220:intron 60.0%
! CCACCAGCTGGTGAAGGCAT+TGG - chr7_3:63843710-63843729 None:intergenic 60.0%
CCAATGCCTTCACCAGCTGG+TGG + chr7_3:63843707-63843726 Msa1116220:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63841717 63844288 63841717 ID=Msa1116220;Name=Msa1116220
chr7_3 mRNA 63841717 63844288 63841717 ID=Msa1116220-mRNA-1;Parent=Msa1116220;Name=Msa1116220-mRNA-1;_AED=0.09;_eAED=0.09;_QI=68|1|1|1|1|1|5|413|312
chr7_3 exon 63841717 63841835 63841717 ID=Msa1116220-mRNA-1:exon:15022;Parent=Msa1116220-mRNA-1
chr7_3 exon 63841923 63842171 63841923 ID=Msa1116220-mRNA-1:exon:15023;Parent=Msa1116220-mRNA-1
chr7_3 exon 63842627 63842854 63842627 ID=Msa1116220-mRNA-1:exon:15024;Parent=Msa1116220-mRNA-1
chr7_3 exon 63842968 63843132 63842968 ID=Msa1116220-mRNA-1:exon:15025;Parent=Msa1116220-mRNA-1
chr7_3 exon 63843630 63844288 63843630 ID=Msa1116220-mRNA-1:exon:15026;Parent=Msa1116220-mRNA-1
chr7_3 five_prime_UTR 63841717 63841784 63841717 ID=Msa1116220-mRNA-1:five_prime_utr;Parent=Msa1116220-mRNA-1
chr7_3 CDS 63841785 63841835 63841785 ID=Msa1116220-mRNA-1:cds;Parent=Msa1116220-mRNA-1
chr7_3 CDS 63841923 63842171 63841923 ID=Msa1116220-mRNA-1:cds;Parent=Msa1116220-mRNA-1
chr7_3 CDS 63842627 63842854 63842627 ID=Msa1116220-mRNA-1:cds;Parent=Msa1116220-mRNA-1
chr7_3 CDS 63842968 63843132 63842968 ID=Msa1116220-mRNA-1:cds;Parent=Msa1116220-mRNA-1
chr7_3 CDS 63843630 63843875 63843630 ID=Msa1116220-mRNA-1:cds;Parent=Msa1116220-mRNA-1
chr7_3 three_prime_UTR 63843876 63844288 63843876 ID=Msa1116220-mRNA-1:three_prime_utr;Parent=Msa1116220-mRNA-1
Gene Sequence

>Msa1116220

ATGACAACCTCGTTGGACACAGCTTCTCCTTCTCCTCTTCACATCAAACAGGATGATACAAACGTTGTTAATTCTTCTTCTCCTCAGTTCACTCCATCTTCCGATAAACGCTTCTGGAGCACTCTCCGTTGTAGAATTGACTCGCTTCTCGATAAACGCGGTCAACCCAAAATCTCAGATTCATTACAGAATGAAAGAGGAAAACGATTGAAGGAAGATTCGTTGTTGCTCATAAGAGGGTTTGACTCGGTTTCTAATACACTATCTCTTTTGTCTAATAATTTGGACAATGCCTTGCTGGGTGCAAGAGAATTGGGGAATCCACCCACATTAACTGATATATTCAAAAGCAAAATTGATCAGTCAGAAAACAATGAAGAAGAGAATTCAGAAGCAGAGAAAGAGAAAGAGGAGTCAAAGCAAGGAGTAAAGAGGAAAATTGATGAATTCTATGAAGAAAATGTTACAGAGTCACAAACAGAAAATGGGGGAAAAATGCATGAAAAACATATCAAGAAAGCAAAAAATATTGCAGTTTCAATGGCAAGCAAAGCAGCTACACTTGCAAGAGAATTGAAGTCTCTTAAATCAGATTTATGTTTTATGCAAGAAAGATGTGGTCTGCTTGAAGAAGAGAACCGAAGATTGCGTGACGGTTTCGCTAAAGGAGTCAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAGCTGGAAGCACTTCTTGGTGAGAAGGCAAGACTAGCCAATGAAAATGCAAATCTGATGAGAGAAAACCAATGCCTTCACCAGCTGGTGGAGTATCATCAACATACTTCACAAGACCTCTCTGAGTCATATGAGCAAGTCATCCAAGGAATGTGCTTGGACTTCTCATCTCCACCACGATCAATTGCCGGAGAAGAGACAAGGGATGAAGATGGTGCTGATGATGATGAGAAATAG

Protein sequence

>Msa1116220

MTTSLDTASPSPLHIKQDDTNVVNSSSPQFTPSSDKRFWSTLRCRIDSLLDKRGQPKISDSLQNERGKRLKEDSLLLIRGFDSVSNTLSLLSNNLDNALLGARELGNPPTLTDIFKSKIDQSENNEEENSEAEKEKEESKQGVKRKIDEFYEENVTESQTENGGKMHEKHIKKAKNIAVSMASKAATLARELKSLKSDLCFMQERCGLLEEENRRLRDGFAKGVRPEEDDLVRLQLEALLGEKARLANENANLMRENQCLHQLVEYHQHTSQDLSESYEQVIQGMCLDFSSPPRSIAGEETRDEDGADDDEK*