AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081390 MtrunA17_Chr7g0259821 94.855 311 8 2 1 311 1 303 0.0 593
Msa1081390 MtrunA17_Chr8g0334431 48.837 129 64 1 166 292 169 297 3.73e-30 116
Msa1081390 MtrunA17_Chr7g0245331 49.606 127 59 2 167 288 225 351 6.56e-29 114
Msa1081390 MtrunA17_Chr3g0108551 35.317 252 123 8 57 293 149 375 5.84e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081390 AT4G02800.1 54.799 323 131 6 1 312 1 319 5.38e-102 302
Msa1081390 AT5G01970.1 33.455 275 158 6 26 283 39 305 9.30e-33 124
Msa1081390 AT5G01970.2 37.441 211 120 4 77 283 6 208 1.07e-32 122
Msa1081390 AT1G30050.1 55.556 108 47 1 168 274 183 290 6.83e-31 120
Msa1081390 AT2G30530.1 53.271 107 50 0 168 274 226 332 4.85e-23 98.2

Find 82 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTAATGAATCTGAGATTT+TGG 0.065777 7_2:+81185455 None:intergenic
AAGTGAATGTTTAATAAATT+TGG 0.149873 7_2:+81183216 None:intergenic
ACAGAGTCACAAACAGAAAA+TGG 0.225910 7_2:-81184698 Msa1081390:CDS
CTTCAGCTGGAAGCACTTCT+TGG 0.294756 7_2:-81183854 Msa1081390:CDS
CCATAGGGTGCAAGAGAATT+GGG 0.312480 7_2:-81184869 Msa1081390:intron
TCCATAGGGTGCAAGAGAAT+TGG 0.320035 7_2:-81184870 Msa1081390:intron
TAATTTGGACAATGCCTTGC+TGG 0.350274 7_2:-81185343 Msa1081390:intron
AATGTTTAATAAATTTGGTT+TGG 0.356208 7_2:+81183221 None:intergenic
AGAACCATTGTCACATTAGT+AGG 0.357230 7_2:+81183424 None:intergenic
CATCTTCCGATAAACGCTTC+TGG 0.357963 7_2:-81185527 Msa1081390:CDS
ATGTTTAATAAATTTGGTTT+GGG 0.383873 7_2:+81183222 None:intergenic
AAAATTTGGTTTGCATGAAA+TGG 0.390413 7_2:+81183522 None:intergenic
CACCAGAGAACTTGTAGAAA+TGG 0.394974 7_2:+81183577 None:intergenic
CGAAACCGTCACGCAATCTT+CGG 0.399997 7_2:+81184412 None:intergenic
GATTCGTTGTTGCTCATAAG+AGG 0.407447 7_2:-81185405 Msa1081390:CDS
TTGCGTGACGGTTTCGCTAA+AGG 0.407989 7_2:-81184405 Msa1081390:CDS
CAGAGTCACAAACAGAAAAT+GGG 0.420249 7_2:-81184697 Msa1081390:CDS
TTTGCAGATTGCAGTTTCAA+TGG 0.433732 7_2:-81184529 Msa1081390:intron
TTCTCCTCTTCACATCAAAC+AGG 0.442956 7_2:-81185679 Msa1081390:intron
AACCATTTCTACAAGTTCTC+TGG 0.444144 7_2:-81183579 Msa1081390:three_prime_UTR
AGAAGCAGAGAAAGAGAAAG+AGG 0.454038 7_2:-81184774 Msa1081390:CDS
TTCATCCCTTGTCTCTTCTC+CGG 0.455453 7_2:+81183664 None:intergenic
TCTCCACCACGATCAATTGC+CGG 0.462348 7_2:-81183683 Msa1081390:CDS
CAGGCCTGAGGAAGATGATC+TGG 0.475023 7_2:-81184379 Msa1081390:intron
CCACCAGCTGGTGAAGGCAT+TGG 0.478762 7_2:+81183783 None:intergenic
TGAAAGAGGAAAACGATTGA+AGG 0.478931 7_2:-81185430 Msa1081390:CDS
AGAAGTCCAAGCACATTCCT+TGG 0.491643 7_2:+81183708 None:intergenic
AGTGCTCCAGAAGCGTTTAT+CGG 0.496763 7_2:+81185521 None:intergenic
ACGGTTTCGCTAAAGGAGTC+AGG 0.501339 7_2:-81184398 Msa1081390:CDS
GGTGTAGGTGAGGCTTCAGC+TGG 0.502604 7_2:-81183867 Msa1081390:intron
CTTACCAGATCATCTTCCTC+AGG 0.509130 7_2:+81184375 None:intergenic
AATATATCAGTTAATGTGGG+TGG 0.516844 7_2:+81184842 None:intergenic
AAACCAATGCCTTCACCAGC+TGG 0.518473 7_2:-81183786 Msa1081390:CDS
AGACTGTCACATTATAATAG+TGG 0.519320 7_2:+81183367 None:intergenic
CAGAAGCGTTTATCGGAAGA+TGG 0.528157 7_2:+81185528 None:intergenic
GTAGAAATGGTTACTAGAGA+TGG 0.530230 7_2:+81183590 None:intergenic
GATTCATTACAGAATGAAAG+AGG 0.535883 7_2:-81185444 Msa1081390:CDS
TTACAGAGGGGATGTTATGA+TGG 0.536525 7_2:+81183493 None:intergenic
GGTTACTAGAGATGGTTCCT+TGG 0.537693 7_2:+81183598 None:intergenic
GGAAGCACTTCTTGGTGAGA+AGG 0.546681 7_2:-81183846 Msa1081390:CDS
AGTCATCCAAGGAATGTGCT+TGG 0.547639 7_2:-81183714 Msa1081390:CDS
TTTGAATATATCAGTTAATG+TGG 0.556491 7_2:+81184838 None:intergenic
AAAACCTGTTTGATGTGAAG+AGG 0.562179 7_2:+81185675 None:intergenic
TTGAATATATCAGTTAATGT+GGG 0.565772 7_2:+81184839 None:intergenic
AGTCAAAGCAAGGAGTAAAG+AGG 0.574305 7_2:-81184751 Msa1081390:CDS
GAAGAGACAAGGGATGAAGA+TGG 0.575725 7_2:-81183659 Msa1081390:CDS
ATTCGTTGTTGCTCATAAGA+GGG 0.576596 7_2:-81185404 Msa1081390:CDS
ATTTGCAGCATCATTACAGA+GGG 0.577586 7_2:+81183480 None:intergenic
TGTTTGATGTGAAGAGGAGA+AGG 0.578043 7_2:+81185681 None:intergenic
CAATTGCCGGAGAAGAGACA+AGG 0.585854 7_2:-81183670 Msa1081390:CDS
AAACACCATGACAACCTCGT+TGG 0.586010 7_2:-81185715 Msa1081390:exon
CATAGGGTGCAAGAGAATTG+GGG 0.596960 7_2:-81184868 Msa1081390:intron
AGTGAGATAATCTTAACTAA+CGG 0.602190 7_2:+81185765 None:intergenic
GATACTCCACCAGCTGGTGA+AGG 0.606126 7_2:+81183777 None:intergenic
TCTCCGGCAATTGATCGTGG+TGG 0.606421 7_2:+81183680 None:intergenic
TCTTCTCCGGCAATTGATCG+TGG 0.606721 7_2:+81183677 None:intergenic
TCATATGAGCAAGTCATCCA+AGG 0.609790 7_2:-81183725 Msa1081390:CDS
AGAGTCACAAACAGAAAATG+GGG 0.611613 7_2:-81184696 Msa1081390:CDS
TTGCATGAAATGGTGATGGT+AGG 0.612666 7_2:+81183532 None:intergenic
CCAATGCCTTCACCAGCTGG+TGG 0.614590 7_2:-81183783 Msa1081390:CDS
TGGTTTGCATGAAATGGTGA+TGG 0.615131 7_2:+81183528 None:intergenic
TGTGTCCAACGAGGTTGTCA+TGG 0.617619 7_2:+81185710 None:intergenic
GCTCATAAGAGGGTTTGACT+CGG 0.617847 7_2:-81185394 Msa1081390:CDS
GAGAAAGAGGAGTCAAAGCA+AGG 0.618162 7_2:-81184761 Msa1081390:CDS
TGTGACAATGGTTCTAAATG+TGG 0.624512 7_2:-81183416 Msa1081390:three_prime_UTR
TCTTCCTACTAATGTGACAA+TGG 0.625282 7_2:-81183428 Msa1081390:three_prime_UTR
CGCTAAAGGAGTCAGGCCTG+AGG 0.629684 7_2:-81184391 Msa1081390:CDS
GTTGATGATACTCCACCAGC+TGG 0.633667 7_2:+81183771 None:intergenic
ACATTATAATAGTGGCGGAG+TGG 0.655847 7_2:+81183375 None:intergenic
CTGTCACATTATAATAGTGG+CGG 0.659217 7_2:+81183370 None:intergenic
TATTTGCAGCATCATTACAG+AGG 0.660089 7_2:+81183479 None:intergenic
AATTGCCGGAGAAGAGACAA+GGG 0.670922 7_2:-81183669 Msa1081390:CDS
TCGGAAGATGGAGTGAACTG+AGG 0.679491 7_2:+81185540 None:intergenic
GAGAACCGAAGATTGCGTGA+CGG 0.684297 7_2:-81184417 Msa1081390:CDS
AATACTACTACTTACCAGCA+AGG 0.696405 7_2:+81185329 None:intergenic
GAGAAGAACTATGAACACCA+AGG 0.704185 7_2:-81183615 Msa1081390:three_prime_UTR
GAGTCACAAACAGAAAATGG+GGG 0.707145 7_2:-81184695 Msa1081390:CDS
GAAGCGAGTCAATTCTACAA+CGG 0.721187 7_2:+81185496 None:intergenic
CTTGCTCATATGACTCAGAG+AGG 0.724039 7_2:+81183735 None:intergenic
AGGAGAAGCTGTGTCCAACG+AGG 0.737241 7_2:+81185701 None:intergenic
GACTCGCTTCTCGATAAACG+CGG 0.746002 7_2:-81185483 Msa1081390:CDS
TTTGCAGCATCATTACAGAG+GGG 0.746992 7_2:+81183481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAAACATTAATTAAT+TGG + chr7_2:81183730-81183749 None:intergenic 10.0%
!! GATTTATCTAGTTAAAAATT+TGG - chr7_2:81183996-81184015 Msa1081390:intron 15.0%
!!! TTTAGAATTTCATTGATTTT+AGG - chr7_2:81185060-81185079 Msa1081390:intron 15.0%
!!! ATAGTGATGTTTTTTTTTAG+AGG + chr7_2:81183356-81183375 None:intergenic 20.0%
!!! ATCTCTTTTGTCTAATAATT+TGG - chr7_2:81183640-81183659 Msa1081390:CDS 20.0%
!!! TTTTAACCATATCAAAAAAG+CGG + chr7_2:81183811-81183830 None:intergenic 20.0%
!!! TTTTTCTTCTATATTTGAGA+CGG + chr7_2:81183960-81183979 None:intergenic 20.0%
!!! ATTCAGATTATTTTTCCATA+GGG - chr7_2:81184114-81184133 Msa1081390:intron 20.0%
!! TTGAATATATCAGTTAATGT+GGG + chr7_2:81184162-81184181 None:intergenic 20.0%
!! TTTGAATATATCAGTTAATG+TGG + chr7_2:81184163-81184182 None:intergenic 20.0%
!! TACTAGTTAGTAGATTATAT+TGG - chr7_2:81184409-81184428 Msa1081390:CDS 20.0%
!! AATCTTAATCATATACCATA+TGG - chr7_2:81184656-81184675 Msa1081390:intron 20.0%
!!! TTCAAATTCTTTTAACCATA+TGG + chr7_2:81184674-81184693 None:intergenic 20.0%
!! ATTGTAATTAGACATTAGTT+AGG - chr7_2:81184774-81184793 Msa1081390:CDS 20.0%
!! ATTAGTTCCATAATAAATTC+AGG + chr7_2:81185088-81185107 None:intergenic 20.0%
!! CTAAAAAAATATATCTTGCA+TGG - chr7_2:81185666-81185685 Msa1081390:intron 20.0%
! AGTGAGATAATCTTAACTAA+CGG + chr7_2:81183236-81183255 None:intergenic 25.0%
!!! ATGTTTTTTTTTAGAGGAAG+AGG + chr7_2:81183350-81183369 None:intergenic 25.0%
!! TGTTTTCGTTTTATAACAAC+AGG - chr7_2:81183406-81183425 Msa1081390:three_prime_UTR 25.0%
!!! TGTAATGAATCTGAGATTTT+GGG + chr7_2:81183545-81183564 None:intergenic 25.0%
!!! TAATAACCGCTTTTTTGATA+TGG - chr7_2:81183802-81183821 Msa1081390:CDS 25.0%
!!! TTTTTGTTTATATTCGAGAC+CGG - chr7_2:81184052-81184071 Msa1081390:intron 25.0%
! ACTCAAAAATCTACTTTATC+CGG + chr7_2:81184074-81184093 None:intergenic 25.0%
!!! CATTCAGATTATTTTTCCAT+AGG - chr7_2:81184113-81184132 Msa1081390:intron 25.0%
! ATCAAGAAAGCAAAAAATGT+TGG - chr7_2:81184345-81184364 Msa1081390:intron 25.0%
! TTCTTAAAACAATTGCATTG+AGG + chr7_2:81184893-81184912 None:intergenic 25.0%
!!! GAATCATTGTTGATAACAAT+AGG - chr7_2:81184917-81184936 Msa1081390:intron 25.0%
! ATTATGGAACTAATCTTATG+TGG - chr7_2:81185094-81185113 Msa1081390:intron 25.0%
!!! AAAATTTGGTTTGCATGAAA+TGG + chr7_2:81185479-81185498 None:intergenic 25.0%
!! TATGATGGTGCTAAAAAATT+TGG + chr7_2:81185493-81185512 None:intergenic 25.0%
!! CTGTAATGAATCTGAGATTT+TGG + chr7_2:81183546-81183565 None:intergenic 30.0%
GATTCATTACAGAATGAAAG+AGG - chr7_2:81183554-81183573 Msa1081390:three_prime_UTR 30.0%
AATATATCAGTTAATGTGGG+TGG + chr7_2:81184159-81184178 None:intergenic 30.0%
!! CTAGTACAATAGTTGATAAC+AGG + chr7_2:81184389-81184408 None:intergenic 30.0%
! TATATTGGTACTGAAGTTTG+TGG - chr7_2:81184424-81184443 Msa1081390:CDS 30.0%
! TGTTTTATGCAAGAAAGATG+TGG - chr7_2:81184545-81184564 Msa1081390:intron 30.0%
!! CACAGTTTTTCTCTAGAAAT+TGG - chr7_2:81184824-81184843 Msa1081390:CDS 30.0%
!! TTTTTCTCTAGAAATTGGAG+TGG - chr7_2:81184829-81184848 Msa1081390:CDS 30.0%
TATTCTCTTTGAACAATTCC+AGG + chr7_2:81185013-81185032 None:intergenic 30.0%
TTAGGAGCCTGAATTTATTA+TGG - chr7_2:81185078-81185097 Msa1081390:intron 30.0%
AACTAATCTTATGTGGATGA+TGG - chr7_2:81185101-81185120 Msa1081390:intron 30.0%
! CATCAGATTTGCATTTTCAT+TGG + chr7_2:81185187-81185206 None:intergenic 30.0%
! TTATTTTCTGCGGTAATACA+AGG + chr7_2:81185547-81185566 None:intergenic 30.0%
! AGGAAGATCATTATTTTCTG+CGG + chr7_2:81185557-81185576 None:intergenic 30.0%
AGACTGTCACATTATAATAG+TGG + chr7_2:81185634-81185653 None:intergenic 30.0%
AAAACCTGTTTGATGTGAAG+AGG + chr7_2:81183326-81183345 None:intergenic 35.0%
TGAAAGAGGAAAACGATTGA+AGG - chr7_2:81183568-81183587 Msa1081390:three_prime_UTR 35.0%
ATTCGTTGTTGCTCATAAGA+GGG - chr7_2:81183594-81183613 Msa1081390:three_prime_UTR 35.0%
AATACTACTACTTACCAGCA+AGG + chr7_2:81183672-81183691 None:intergenic 35.0%
ACAGAGTCACAAACAGAAAA+TGG - chr7_2:81184300-81184319 Msa1081390:intron 35.0%
CAGAGTCACAAACAGAAAAT+GGG - chr7_2:81184301-81184320 Msa1081390:intron 35.0%
AGAGTCACAAACAGAAAATG+GGG - chr7_2:81184302-81184321 Msa1081390:intron 35.0%
TTTGCAGATTGCAGTTTCAA+TGG - chr7_2:81184469-81184488 Msa1081390:CDS 35.0%
AACATCACTAACTCTTTCAC+AGG + chr7_2:81184703-81184722 None:intergenic 35.0%
ATTGGAGTGGTCTAGTTATT+TGG - chr7_2:81184842-81184861 Msa1081390:CDS 35.0%
! TGTGTTGATCAATTTAGTCC+TGG - chr7_2:81184992-81185011 Msa1081390:intron 35.0%
GTAGAAATGGTTACTAGAGA+TGG + chr7_2:81185411-81185430 None:intergenic 35.0%
AACCATTTCTACAAGTTCTC+TGG - chr7_2:81185419-81185438 Msa1081390:CDS 35.0%
ATTTGCAGCATCATTACAGA+GGG + chr7_2:81185521-81185540 None:intergenic 35.0%
TATTTGCAGCATCATTACAG+AGG + chr7_2:81185522-81185541 None:intergenic 35.0%
TCTTCCTACTAATGTGACAA+TGG - chr7_2:81185570-81185589 Msa1081390:CDS 35.0%
AGAACCATTGTCACATTAGT+AGG + chr7_2:81185577-81185596 None:intergenic 35.0%
!! TGTGACAATGGTTCTAAATG+TGG - chr7_2:81185582-81185601 Msa1081390:intron 35.0%
CTGTCACATTATAATAGTGG+CGG + chr7_2:81185631-81185650 None:intergenic 35.0%
TGTTTGATGTGAAGAGGAGA+AGG + chr7_2:81183320-81183339 None:intergenic 40.0%
TTCTCCTCTTCACATCAAAC+AGG - chr7_2:81183319-81183338 Msa1081390:three_prime_UTR 40.0%
GAAGCGAGTCAATTCTACAA+CGG + chr7_2:81183505-81183524 None:intergenic 40.0%
GATTCGTTGTTGCTCATAAG+AGG - chr7_2:81183593-81183612 Msa1081390:three_prime_UTR 40.0%
TAATTTGGACAATGCCTTGC+TGG - chr7_2:81183655-81183674 Msa1081390:CDS 40.0%
AGAAGCAGAGAAAGAGAAAG+AGG - chr7_2:81184224-81184243 Msa1081390:intron 40.0%
AGTCAAAGCAAGGAGTAAAG+AGG - chr7_2:81184247-81184266 Msa1081390:intron 40.0%
GAGTCACAAACAGAAAATGG+GGG - chr7_2:81184303-81184322 Msa1081390:intron 40.0%
! TATGTGGATGATGGTTTGTG+TGG - chr7_2:81185110-81185129 Msa1081390:intron 40.0%
TCATATGAGCAAGTCATCCA+AGG - chr7_2:81185273-81185292 Msa1081390:intron 40.0%
GAGAAGAACTATGAACACCA+AGG - chr7_2:81185383-81185402 Msa1081390:CDS 40.0%
CACCAGAGAACTTGTAGAAA+TGG + chr7_2:81185424-81185443 None:intergenic 40.0%
! CTCTGGTGAACTTTTGATGA+TGG - chr7_2:81185436-81185455 Msa1081390:CDS 40.0%
!! TTGCATGAAATGGTGATGGT+AGG + chr7_2:81185469-81185488 None:intergenic 40.0%
! TGGTTTGCATGAAATGGTGA+TGG + chr7_2:81185473-81185492 None:intergenic 40.0%
TTACAGAGGGGATGTTATGA+TGG + chr7_2:81185508-81185527 None:intergenic 40.0%
TTTGCAGCATCATTACAGAG+GGG + chr7_2:81185520-81185539 None:intergenic 40.0%
! ACATTATAATAGTGGCGGAG+TGG + chr7_2:81185626-81185645 None:intergenic 40.0%
AAACACCATGACAACCTCGT+TGG - chr7_2:81183283-81183302 Msa1081390:three_prime_UTR 45.0%
!! CAGAAGCGTTTATCGGAAGA+TGG + chr7_2:81183473-81183492 None:intergenic 45.0%
CATCTTCCGATAAACGCTTC+TGG - chr7_2:81183471-81183490 Msa1081390:three_prime_UTR 45.0%
!! AGTGCTCCAGAAGCGTTTAT+CGG + chr7_2:81183480-81183499 None:intergenic 45.0%
GCTCATAAGAGGGTTTGACT+CGG - chr7_2:81183604-81183623 Msa1081390:three_prime_UTR 45.0%
TCCATAGGGTGCAAGAGAAT+TGG - chr7_2:81184128-81184147 Msa1081390:intron 45.0%
CCATAGGGTGCAAGAGAATT+GGG - chr7_2:81184129-81184148 Msa1081390:intron 45.0%
CATAGGGTGCAAGAGAATTG+GGG - chr7_2:81184130-81184149 Msa1081390:intron 45.0%
GAGAAAGAGGAGTCAAAGCA+AGG - chr7_2:81184237-81184256 Msa1081390:intron 45.0%
CTTACCAGATCATCTTCCTC+AGG + chr7_2:81184626-81184645 None:intergenic 45.0%
CTGAGGAAGATGATCTGGTA+AGG - chr7_2:81184624-81184643 Msa1081390:intron 45.0%
! GATGATGGTTTGTGTGGTGT+AGG - chr7_2:81185116-81185135 Msa1081390:intron 45.0%
CTTGCTCATATGACTCAGAG+AGG + chr7_2:81185266-81185285 None:intergenic 45.0%
AGTCATCCAAGGAATGTGCT+TGG - chr7_2:81185284-81185303 Msa1081390:intron 45.0%
AGAAGTCCAAGCACATTCCT+TGG + chr7_2:81185293-81185312 None:intergenic 45.0%
AATTGCCGGAGAAGAGACAA+GGG - chr7_2:81185329-81185348 Msa1081390:intron 45.0%
TTCATCCCTTGTCTCTTCTC+CGG + chr7_2:81185337-81185356 None:intergenic 45.0%
GAAGAGACAAGGGATGAAGA+TGG - chr7_2:81185339-81185358 Msa1081390:intron 45.0%
GGTTACTAGAGATGGTTCCT+TGG + chr7_2:81185403-81185422 None:intergenic 45.0%
TGTGTCCAACGAGGTTGTCA+TGG + chr7_2:81183291-81183310 None:intergenic 50.0%
TCGGAAGATGGAGTGAACTG+AGG + chr7_2:81183461-81183480 None:intergenic 50.0%
GACTCGCTTCTCGATAAACG+CGG - chr7_2:81183515-81183534 Msa1081390:three_prime_UTR 50.0%
CCCAATTCTCTTGCACCCTA+TGG + chr7_2:81184132-81184151 None:intergenic 50.0%
GAGAACCGAAGATTGCGTGA+CGG - chr7_2:81184581-81184600 Msa1081390:intron 50.0%
CGAAACCGTCACGCAATCTT+CGG + chr7_2:81184589-81184608 None:intergenic 50.0%
TTGCGTGACGGTTTCGCTAA+AGG - chr7_2:81184593-81184612 Msa1081390:intron 50.0%
ACGGTTTCGCTAAAGGAGTC+AGG - chr7_2:81184600-81184619 Msa1081390:intron 50.0%
! TGGTTTGTGTGGTGTAGGTG+AGG - chr7_2:81185121-81185140 Msa1081390:intron 50.0%
!! CTTCAGCTGGAAGCACTTCT+TGG - chr7_2:81185144-81185163 Msa1081390:intron 50.0%
!! GGAAGCACTTCTTGGTGAGA+AGG - chr7_2:81185152-81185171 Msa1081390:intron 50.0%
AAACCAATGCCTTCACCAGC+TGG - chr7_2:81185212-81185231 Msa1081390:intron 50.0%
!! GTTGATGATACTCCACCAGC+TGG + chr7_2:81185230-81185249 None:intergenic 50.0%
TCTCCACCACGATCAATTGC+CGG - chr7_2:81185315-81185334 Msa1081390:intron 50.0%
TCTTCTCCGGCAATTGATCG+TGG + chr7_2:81185324-81185343 None:intergenic 50.0%
CAATTGCCGGAGAAGAGACA+AGG - chr7_2:81185328-81185347 Msa1081390:intron 50.0%
AGGAGAAGCTGTGTCCAACG+AGG + chr7_2:81183300-81183319 None:intergenic 55.0%
CAGGCCTGAGGAAGATGATC+TGG - chr7_2:81184619-81184638 Msa1081390:intron 55.0%
GATACTCCACCAGCTGGTGA+AGG + chr7_2:81185224-81185243 None:intergenic 55.0%
TCTCCGGCAATTGATCGTGG+TGG + chr7_2:81185321-81185340 None:intergenic 55.0%
CGCTAAAGGAGTCAGGCCTG+AGG - chr7_2:81184607-81184626 Msa1081390:intron 60.0%
GGTGTAGGTGAGGCTTCAGC+TGG - chr7_2:81185131-81185150 Msa1081390:intron 60.0%
! CCACCAGCTGGTGAAGGCAT+TGG + chr7_2:81185218-81185237 None:intergenic 60.0%
CCAATGCCTTCACCAGCTGG+TGG - chr7_2:81185215-81185234 Msa1081390:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81183224 81185796 81183224 ID=Msa1081390;Name=Msa1081390
chr7_2 mRNA 81183224 81185796 81183224 ID=Msa1081390-mRNA-1;Parent=Msa1081390;Name=Msa1081390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=66|1|1|1|1|1|5|413|312
chr7_2 exon 81183224 81183882 81183224 ID=Msa1081390-mRNA-1:exon:20724;Parent=Msa1081390-mRNA-1
chr7_2 exon 81184380 81184544 81184380 ID=Msa1081390-mRNA-1:exon:20723;Parent=Msa1081390-mRNA-1
chr7_2 exon 81184658 81184885 81184658 ID=Msa1081390-mRNA-1:exon:20722;Parent=Msa1081390-mRNA-1
chr7_2 exon 81185344 81185592 81185344 ID=Msa1081390-mRNA-1:exon:20721;Parent=Msa1081390-mRNA-1
chr7_2 exon 81185680 81185796 81185680 ID=Msa1081390-mRNA-1:exon:20720;Parent=Msa1081390-mRNA-1
chr7_2 five_prime_UTR 81185731 81185796 81185731 ID=Msa1081390-mRNA-1:five_prime_utr;Parent=Msa1081390-mRNA-1
chr7_2 CDS 81185680 81185730 81185680 ID=Msa1081390-mRNA-1:cds;Parent=Msa1081390-mRNA-1
chr7_2 CDS 81185344 81185592 81185344 ID=Msa1081390-mRNA-1:cds;Parent=Msa1081390-mRNA-1
chr7_2 CDS 81184658 81184885 81184658 ID=Msa1081390-mRNA-1:cds;Parent=Msa1081390-mRNA-1
chr7_2 CDS 81184380 81184544 81184380 ID=Msa1081390-mRNA-1:cds;Parent=Msa1081390-mRNA-1
chr7_2 CDS 81183637 81183882 81183637 ID=Msa1081390-mRNA-1:cds;Parent=Msa1081390-mRNA-1
chr7_2 three_prime_UTR 81183224 81183636 81183224 ID=Msa1081390-mRNA-1:three_prime_utr;Parent=Msa1081390-mRNA-1
Gene Sequence

>Msa1081390

ATGACAACCTCGTTGGACACAGCTTCTCCTTCTCCTCTTCACATCAAACAGGATGATACAAACGTTGTTAATTCTTCTTCTCCTCAGTTCACTCCATCTTCCGATAAACGCTTCTGGAGCACTCTCCGTTGTAGAATTGACTCGCTTCTCGATAAACGCGGTCAACCCAAAATCTCAGATTCATTACAGAATGAAAGAGGAAAACGATTGAAGGAAGATTCGTTGTTGCTCATAAGAGGGTTTGACTCGGTTTCTAATACACTATCTCTTTTGTCTAATAATTTGGACAATGCCTTGCTGGGTGCAAGAGAATTGGGGAATCCACCCACATTAACTGATATATTCAAAAGCAAAATTGATCAGTCAGAAAACAATGAAGAAGAGAATTCAGAAGCAGAGAAAGAGAAAGAGGAGTCAAAGCAAGGAGTAAAGAGGAAAATTGATGAATTCTATGAAGAAAATGTTACAGAGTCACAAACAGAAAATGGGGGAAAAATGCATGAAAAACATATCAAGAAAGCAAAAAATATTGCAGTTTCAATGGCAAGCAAAGCAGCTACACTTGCAAGAGAATTGAAGTCTCTTAAATCAGATTTATGTTTTATGCAAGAAAGATGTGGTCTGCTTGAAGAAGAGAACCGAAGATTGCGTGACGGTTTCGCTAAAGGAGTCAGGCCTGAGGAAGATGATCTGGTGAGGCTTCAGCTGGAAGCACTTCTTGGTGAGAAGGCAAGACTAGCCAATGAAAATGCAAATCTGATGAGAGAAAACCAATGCCTTCACCAGCTGGTGGAGTATCATCAACATACTTCACAAGACCTCTCTGAGTCATATGAGCAAGTCATCCAAGGAATGTGCTTGGACTTCTCATCTCCACCACGATCAATTGCCGGAGAAGAGACAAGGGATGAAGATGGTGCTGATGATGATGAGAAATAG

Protein sequence

>Msa1081390

MTTSLDTASPSPLHIKQDDTNVVNSSSPQFTPSSDKRFWSTLRCRIDSLLDKRGQPKISDSLQNERGKRLKEDSLLLIRGFDSVSNTLSLLSNNLDNALLGARELGNPPTLTDIFKSKIDQSENNEEENSEAEKEKEESKQGVKRKIDEFYEENVTESQTENGGKMHEKHIKKAKNIAVSMASKAATLARELKSLKSDLCFMQERCGLLEEENRRLRDGFAKGVRPEEDDLVRLQLEALLGEKARLANENANLMRENQCLHQLVEYHQHTSQDLSESYEQVIQGMCLDFSSPPRSIAGEETRDEDGADDDEK*