Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120130 | XP_003624458.1 | 97.692 | 390 | 9 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120130 | sp|O22800|COL14_ARATH | 35.142 | 424 | 198 | 11 | 5 | 385 | 12 | 401 | 5.57e-63 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120130 | G7KW76 | 97.692 | 390 | 9 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1120130 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa1120130 | 0.822602 | 2.169941e-53 | -8.615850e-47 |
| Msa0605630 | Msa1120130 | 0.808312 | 3.295300e-50 | -8.615850e-47 |
| Msa0686210 | Msa1120130 | 0.802762 | 4.808885e-49 | -8.615850e-47 |
| Msa0717230 | Msa1120130 | -0.804126 | 2.508181e-49 | -8.615850e-47 |
| Msa0758300 | Msa1120130 | -0.803019 | 4.255648e-49 | -8.615850e-47 |
| Msa0140630 | Msa1120130 | 0.804501 | 2.096266e-49 | -8.615850e-47 |
| Msa0156370 | Msa1120130 | 0.832266 | 1.042598e-55 | -8.615850e-47 |
| Msa0381500 | Msa1120130 | 0.802514 | 5.410377e-49 | -8.615850e-47 |
| Msa0402210 | Msa1120130 | 0.806977 | 6.330357e-50 | -8.615850e-47 |
| Msa0355140 | Msa1120130 | 0.807123 | 5.894072e-50 | -8.615850e-47 |
| Msa0483770 | Msa1120130 | 0.803979 | 2.691758e-49 | -8.615850e-47 |
| Msa0519950 | Msa1120130 | 0.803323 | 3.682637e-49 | -8.615850e-47 |
| Msa0550120 | Msa1120130 | 0.803838 | 2.879507e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120130 | MtrunA17_Chr7g0251781 | 97.692 | 390 | 9 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Msa1120130 | MtrunA17_Chr7g0268691 | 47.445 | 137 | 54 | 4 | 4 | 129 | 19 | 148 | 7.84e-31 | 121 |
| Msa1120130 | MtrunA17_Chr7g0268691 | 55.556 | 63 | 26 | 1 | 322 | 382 | 307 | 369 | 7.51e-14 | 72.4 |
| Msa1120130 | MtrunA17_Chr5g0429341 | 42.727 | 110 | 57 | 2 | 1 | 110 | 1 | 104 | 1.40e-23 | 101 |
| Msa1120130 | MtrunA17_Chr3g0120711 | 39.568 | 139 | 76 | 3 | 1 | 138 | 1 | 132 | 2.63e-23 | 100 |
| Msa1120130 | MtrunA17_Chr3g0120711 | 56.061 | 66 | 29 | 0 | 318 | 383 | 331 | 396 | 1.05e-14 | 75.1 |
| Msa1120130 | MtrunA17_Chr2g0322941 | 43.810 | 105 | 49 | 2 | 5 | 108 | 44 | 139 | 6.28e-20 | 88.2 |
| Msa1120130 | MtrunA17_Chr1g0209071 | 34.513 | 113 | 65 | 2 | 5 | 117 | 5 | 108 | 2.23e-17 | 82.8 |
| Msa1120130 | MtrunA17_Chr1g0150471 | 37.113 | 97 | 55 | 1 | 5 | 95 | 6 | 102 | 5.29e-15 | 75.1 |
| Msa1120130 | MtrunA17_Chr2g0322951 | 73.333 | 45 | 12 | 0 | 341 | 385 | 92 | 136 | 2.22e-14 | 70.1 |
| Msa1120130 | MtrunA17_Chr3g0136701 | 42.667 | 75 | 43 | 0 | 5 | 79 | 6 | 80 | 2.37e-13 | 70.1 |
| Msa1120130 | MtrunA17_Chr4g0072871 | 37.634 | 93 | 52 | 2 | 5 | 97 | 22 | 108 | 4.19e-12 | 67.0 |
| Msa1120130 | MtrunA17_Chr4g0072871 | 36.559 | 93 | 54 | 1 | 293 | 385 | 255 | 342 | 1.00e-11 | 65.9 |
| Msa1120130 | MtrunA17_Chr7g0220721 | 32.990 | 97 | 59 | 2 | 5 | 101 | 26 | 116 | 5.34e-11 | 63.9 |
| Msa1120130 | MtrunA17_Chr7g0220721 | 68.293 | 41 | 13 | 0 | 345 | 385 | 331 | 371 | 6.57e-11 | 63.5 |
| Msa1120130 | MtrunA17_Chr3g0142221 | 32.520 | 123 | 61 | 3 | 1 | 107 | 1 | 117 | 9.66e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1120130 | AT2G33500.2 | 35.225 | 423 | 198 | 11 | 5 | 385 | 12 | 400 | 4.60e-64 | 210 |
| Msa1120130 | AT2G33500.1 | 35.142 | 424 | 198 | 11 | 5 | 385 | 12 | 401 | 5.66e-64 | 210 |
| Msa1120130 | AT1G28050.1 | 53.509 | 114 | 47 | 1 | 4 | 117 | 8 | 115 | 1.20e-36 | 138 |
| Msa1120130 | AT1G28050.1 | 39.785 | 186 | 87 | 6 | 215 | 385 | 254 | 429 | 5.24e-22 | 97.4 |
| Msa1120130 | AT2G47890.3 | 48.361 | 122 | 55 | 2 | 5 | 126 | 13 | 126 | 8.84e-29 | 114 |
| Msa1120130 | AT2G47890.2 | 48.361 | 122 | 55 | 2 | 5 | 126 | 13 | 126 | 1.14e-28 | 112 |
| Msa1120130 | AT2G47890.1 | 48.361 | 122 | 55 | 2 | 5 | 126 | 13 | 126 | 1.15e-28 | 114 |
| Msa1120130 | AT2G47890.1 | 62.745 | 51 | 19 | 0 | 335 | 385 | 281 | 331 | 1.92e-13 | 71.2 |
| Msa1120130 | AT5G48250.1 | 41.322 | 121 | 67 | 1 | 1 | 121 | 1 | 117 | 2.19e-25 | 106 |
| Msa1120130 | AT5G48250.1 | 61.224 | 49 | 19 | 0 | 337 | 385 | 312 | 360 | 6.71e-13 | 70.1 |
| Msa1120130 | AT3G07650.3 | 39.669 | 121 | 68 | 2 | 1 | 116 | 1 | 121 | 3.61e-22 | 97.4 |
| Msa1120130 | AT3G07650.3 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 2.95e-14 | 73.9 |
| Msa1120130 | AT3G07650.2 | 39.669 | 121 | 68 | 2 | 1 | 116 | 1 | 121 | 3.61e-22 | 97.4 |
| Msa1120130 | AT3G07650.2 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 2.95e-14 | 73.9 |
| Msa1120130 | AT3G07650.4 | 39.669 | 121 | 68 | 2 | 1 | 116 | 1 | 121 | 3.61e-22 | 97.4 |
| Msa1120130 | AT3G07650.4 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 2.95e-14 | 73.9 |
| Msa1120130 | AT3G07650.1 | 39.669 | 121 | 68 | 2 | 1 | 116 | 1 | 121 | 3.61e-22 | 97.4 |
| Msa1120130 | AT3G07650.1 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 2.95e-14 | 73.9 |
| Msa1120130 | AT1G68190.1 | 35.135 | 148 | 86 | 3 | 5 | 150 | 14 | 153 | 1.37e-21 | 95.5 |
| Msa1120130 | AT1G68190.3 | 35.135 | 148 | 86 | 3 | 5 | 150 | 14 | 153 | 1.37e-21 | 95.5 |
| Msa1120130 | AT1G68190.2 | 35.135 | 148 | 86 | 3 | 5 | 150 | 43 | 182 | 1.43e-21 | 95.9 |
| Msa1120130 | AT3G21880.1 | 36.800 | 125 | 71 | 1 | 5 | 129 | 5 | 121 | 3.87e-20 | 91.3 |
| Msa1120130 | AT3G21880.1 | 75.556 | 45 | 11 | 0 | 341 | 385 | 307 | 351 | 2.16e-13 | 71.2 |
| Msa1120130 | AT3G21880.3 | 36.800 | 125 | 71 | 1 | 5 | 129 | 9 | 125 | 4.15e-20 | 91.3 |
| Msa1120130 | AT3G21880.3 | 75.556 | 45 | 11 | 0 | 341 | 385 | 311 | 355 | 2.21e-13 | 71.2 |
| Msa1120130 | AT3G21880.2 | 36.800 | 125 | 71 | 1 | 5 | 129 | 9 | 125 | 4.15e-20 | 91.3 |
| Msa1120130 | AT3G21880.2 | 75.556 | 45 | 11 | 0 | 341 | 385 | 311 | 355 | 2.21e-13 | 71.2 |
| Msa1120130 | AT4G15250.1 | 34.146 | 123 | 73 | 1 | 5 | 127 | 5 | 119 | 1.03e-18 | 86.7 |
| Msa1120130 | AT5G24930.1 | 44.444 | 72 | 40 | 0 | 5 | 76 | 6 | 77 | 2.75e-14 | 73.9 |
| Msa1120130 | AT5G15840.1 | 35.714 | 98 | 57 | 2 | 4 | 101 | 19 | 110 | 9.75e-13 | 69.3 |
| Msa1120130 | AT5G15840.2 | 35.714 | 98 | 57 | 2 | 4 | 101 | 19 | 110 | 3.21e-12 | 67.0 |
| Msa1120130 | AT3G02380.1 | 37.333 | 75 | 47 | 0 | 5 | 79 | 16 | 90 | 1.10e-11 | 65.9 |
| Msa1120130 | AT5G15850.1 | 38.667 | 75 | 46 | 0 | 5 | 79 | 12 | 86 | 1.67e-11 | 65.5 |
| Msa1120130 | AT2G24790.1 | 38.272 | 81 | 47 | 1 | 5 | 85 | 8 | 85 | 4.81e-11 | 63.5 |
| Msa1120130 | AT2G24790.2 | 38.272 | 81 | 47 | 1 | 5 | 85 | 8 | 85 | 8.57e-11 | 62.0 |
Find 100 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATCTTGCAATGATTT+TGG | 0.160937 | 7_3:-69318591 | None:intergenic |
| TGCGAAGAGGAAGAGGAATT+TGG | 0.187240 | 7_3:+69316806 | Msa1120130:CDS |
| TGTTATGGATTCAATCAATT+TGG | 0.190330 | 7_3:-69319808 | None:intergenic |
| ATGAATCTGGTCTTCTTCTT+TGG | 0.202244 | 7_3:+69316976 | Msa1120130:CDS |
| TTATTGATTTGATTCTTTCT+TGG | 0.276885 | 7_3:+69320468 | Msa1120130:three_prime_UTR |
| AAGAGAAATAGTAATGATTA+TGG | 0.284505 | 7_3:+69316951 | Msa1120130:CDS |
| TGAATCTGGTCTTCTTCTTT+GGG | 0.293542 | 7_3:+69316977 | Msa1120130:CDS |
| CACGAGATCGTTTCTACTTT+GGG | 0.309004 | 7_3:+69316678 | Msa1120130:CDS |
| TGCCATGGGATGAGGTTTCT+TGG | 0.322653 | 7_3:-69320310 | None:intergenic |
| ATTTGAAGGTCCGGTGGTTC+CGG | 0.352451 | 7_3:+69316740 | Msa1120130:CDS |
| CTCAAAAGATGTTCCATAAC+TGG | 0.354580 | 7_3:-69319852 | None:intergenic |
| TTCAAATTCCGCTACGAAAA+CGG | 0.368362 | 7_3:-69316724 | None:intergenic |
| CTTCTATACGGCGGCGGTTG+TGG | 0.371891 | 7_3:-69316632 | None:intergenic |
| TATATCAGAGAAATATTAAC+AGG | 0.383723 | 7_3:+69320410 | Msa1120130:intron |
| GCAAAATTTGCAGAATCAAT+CGG | 0.389145 | 7_3:+69319710 | Msa1120130:intron |
| GTGCTCTTCCAAGCCAATCT+TGG | 0.393330 | 7_3:-69319904 | None:intergenic |
| CGCCGACAGTGTACCAGTTA+TGG | 0.397943 | 7_3:+69319839 | Msa1120130:CDS |
| AAACAGAGTTTCGCGGAGTC+TGG | 0.399009 | 7_3:-69316417 | None:intergenic |
| AATGATTATGGAAATGAATC+TGG | 0.399310 | 7_3:+69316963 | Msa1120130:CDS |
| AATATGAATTGCTCAACATT+TGG | 0.400714 | 7_3:+69318615 | Msa1120130:CDS |
| AGCAACATAAATGCCAAGAT+TGG | 0.407616 | 7_3:+69319891 | Msa1120130:CDS |
| AGTGAGAGGGCGATTTGTTA+AGG | 0.417847 | 7_3:+69320254 | Msa1120130:CDS |
| TACGGCGGCGGTTGTGGTGG+TGG | 0.418409 | 7_3:-69316626 | None:intergenic |
| TGGTTCCGGTTGTGAAGAAT+AGG | 0.424178 | 7_3:+69316754 | Msa1120130:CDS |
| TCACGAGATCGTTTCTACTT+TGG | 0.428133 | 7_3:+69316677 | Msa1120130:CDS |
| CTCGTGAACGGAAGGACAAC+CGG | 0.438426 | 7_3:-69316661 | None:intergenic |
| CACAACCGCCGCCGTATAGA+AGG | 0.439408 | 7_3:+69316633 | Msa1120130:CDS |
| GCTACGAAAACGGAGTCATT+CGG | 0.440696 | 7_3:-69316714 | None:intergenic |
| TAGGGATGAGGTGTATGAAC+AGG | 0.447620 | 7_3:+69316773 | Msa1120130:CDS |
| GTCGGCGCCACTGTATGTTA+TGG | 0.448248 | 7_3:-69319823 | None:intergenic |
| TTCAATGTCACCGCTGCGAT+TGG | 0.452188 | 7_3:+69316559 | Msa1120130:CDS |
| CGTAGCGGAATTTGAAGGTC+CGG | 0.462252 | 7_3:+69316731 | Msa1120130:CDS |
| TGGAAGTTGCGAAGAGGAAG+AGG | 0.466657 | 7_3:+69316799 | Msa1120130:CDS |
| AACCGGTGAGACCTTCTATA+CGG | 0.471948 | 7_3:-69316644 | None:intergenic |
| TACTTTGGTTGTAAGAAAGA+AGG | 0.473670 | 7_3:-69316327 | None:intergenic |
| CTTGAGTGCGAGTGCGTTTG+CGG | 0.474133 | 7_3:-69316463 | None:intergenic |
| TCATCCCTATTCTTCACAAC+CGG | 0.475665 | 7_3:-69316759 | None:intergenic |
| GAAGAGCACACAAGGAATAG+AGG | 0.476262 | 7_3:+69319918 | Msa1120130:CDS |
| ACCTGGGGAGGCTGATACGT+GGG | 0.477722 | 7_3:-69317008 | None:intergenic |
| CGCAGCGGTGACATTGAACT+AGG | 0.479363 | 7_3:-69316554 | None:intergenic |
| CTTCTCCTTGTACCGTAACA+TGG | 0.495549 | 7_3:-69319946 | None:intergenic |
| GGATGCCATGTTACGGTACA+AGG | 0.500503 | 7_3:+69319941 | Msa1120130:CDS |
| AAATTAAGCAAAGAAGTAAA+CGG | 0.500811 | 7_3:-69316903 | None:intergenic |
| TTCTTCACAACCGGAACCAC+CGG | 0.501470 | 7_3:-69316750 | None:intergenic |
| AAGGGAAATGCCATGGGATG+AGG | 0.502225 | 7_3:-69320318 | None:intergenic |
| TGAGGTGTATGAACAGGTGG+TGG | 0.504109 | 7_3:+69316779 | Msa1120130:CDS |
| AGCAACAAGAAAACTAGAGA+TGG | 0.509293 | 7_3:+69319771 | Msa1120130:CDS |
| TCAAGAGATATGACATATGA+TGG | 0.511657 | 7_3:+69318543 | Msa1120130:CDS |
| AGCACATTCGCTATGAATCA+AGG | 0.520514 | 7_3:+69320205 | Msa1120130:CDS |
| GAAGAGGAAGAGGAATTTGG+AGG | 0.524479 | 7_3:+69316809 | Msa1120130:CDS |
| TTTCTACTTTCTTCTTCACA+TGG | 0.524678 | 7_3:-69319749 | None:intergenic |
| GGTTCCGGTTGTGAAGAATA+GGG | 0.535707 | 7_3:+69316755 | Msa1120130:CDS |
| CATAAATGCCAAGATTGGCT+TGG | 0.540383 | 7_3:+69319896 | Msa1120130:CDS |
| CTATACGGCGGCGGTTGTGG+TGG | 0.541136 | 7_3:-69316629 | None:intergenic |
| GCTATGAATCAAGGAAGGCT+AGG | 0.543852 | 7_3:+69320214 | Msa1120130:CDS |
| TTTATAGTCAGTTGATAATG+TGG | 0.544615 | 7_3:-69320530 | None:intergenic |
| ATGGGATGAGGTTTCTTGGA+AGG | 0.548582 | 7_3:-69320306 | None:intergenic |
| CACATACAAGGGAAATGCCA+TGG | 0.553658 | 7_3:-69320325 | None:intergenic |
| ATAGAGGGGATGCCATGTTA+CGG | 0.554868 | 7_3:+69319934 | Msa1120130:CDS |
| TGGTGGAAAGATGAAGAGGT+GGG | 0.564898 | 7_3:-69316609 | None:intergenic |
| GAAACGATCTCGTGAACGGA+AGG | 0.565871 | 7_3:-69316669 | None:intergenic |
| GATACGAGAAAGAGAGTGAG+AGG | 0.573604 | 7_3:+69320240 | Msa1120130:CDS |
| CTATGAATCAAGGAAGGCTA+GGG | 0.574333 | 7_3:+69320215 | Msa1120130:CDS |
| AAGAGCACACAAGGAATAGA+GGG | 0.577298 | 7_3:+69319919 | Msa1120130:CDS |
| GCAACAAGAAAACTAGAGAT+GGG | 0.580033 | 7_3:+69319772 | Msa1120130:CDS |
| GCAACTGATGATATTCAAGA+AGG | 0.580530 | 7_3:+69320276 | Msa1120130:CDS |
| ATTATATGCATACACATACA+AGG | 0.581435 | 7_3:-69320337 | None:intergenic |
| AGTAGAAACGATCTCGTGAA+CGG | 0.584234 | 7_3:-69316673 | None:intergenic |
| CGTTTGCGGAGTGCACGTGC+TGG | 0.587965 | 7_3:-69316449 | None:intergenic |
| TTCCAAGAAACCTCATCCCA+TGG | 0.592114 | 7_3:+69320308 | Msa1120130:three_prime_UTR |
| TTGGCTTGGAAGAGCACACA+AGG | 0.593037 | 7_3:+69319910 | Msa1120130:CDS |
| GGATGAGGTGTATGAACAGG+TGG | 0.594648 | 7_3:+69316776 | Msa1120130:CDS |
| GTGGTGGAAAGATGAAGAGG+TGG | 0.596821 | 7_3:-69316610 | None:intergenic |
| TTCCATAACTGGTACACTGT+CGG | 0.600741 | 7_3:-69319841 | None:intergenic |
| GTGGTGGTGGAAAGATGAAG+AGG | 0.606309 | 7_3:-69316613 | None:intergenic |
| GGTTGTGAAGAATAGGGATG+AGG | 0.611431 | 7_3:+69316761 | Msa1120130:CDS |
| ACAAATTAACAAACCTGGGG+AGG | 0.611687 | 7_3:-69317020 | None:intergenic |
| TCCCACGTATCAGCCTCCCC+AGG | 0.613709 | 7_3:+69317007 | Msa1120130:CDS |
| AGCGGAATTTGAAGGTCCGG+TGG | 0.616808 | 7_3:+69316734 | Msa1120130:CDS |
| CGCCGTATAGAAGGTCTCAC+CGG | 0.625403 | 7_3:+69316642 | Msa1120130:CDS |
| CTTGTGTCGCAATAGTCACA+CGG | 0.626589 | 7_3:-69316372 | None:intergenic |
| TGAGACCTTCTATACGGCGG+CGG | 0.629918 | 7_3:-69316638 | None:intergenic |
| CGCTGCGATTGGAACTCTCA+CGG | 0.637906 | 7_3:+69316570 | Msa1120130:CDS |
| ACATACAAGGGAAATGCCAT+GGG | 0.639407 | 7_3:-69320324 | None:intergenic |
| ATTGAATCCATAACATACAG+TGG | 0.640281 | 7_3:+69319816 | Msa1120130:CDS |
| GCAAACTAAACAGAGTTTCG+CGG | 0.640738 | 7_3:-69316424 | None:intergenic |
| TTATATGCATACACATACAA+GGG | 0.644276 | 7_3:-69320336 | None:intergenic |
| AACCTGGGGAGGCTGATACG+TGG | 0.646766 | 7_3:-69317009 | None:intergenic |
| CATTCGCTATGAATCAAGGA+AGG | 0.651760 | 7_3:+69320209 | Msa1120130:CDS |
| AGATATGACATATGATGGTG+TGG | 0.652581 | 7_3:+69318548 | Msa1120130:CDS |
| GGTGAAGCAACGAACTGAAG+CGG | 0.659811 | 7_3:-69316526 | None:intergenic |
| ATACGAGAAAGAGAGTGAGA+GGG | 0.660678 | 7_3:+69320241 | Msa1120130:CDS |
| GGTGGAAAGATGAAGAGGTG+GGG | 0.660716 | 7_3:-69316608 | None:intergenic |
| AGGTGGTGGAAGTTGCGAAG+AGG | 0.669173 | 7_3:+69316793 | Msa1120130:CDS |
| AGGAGAAGAAGAAAACTCGA+AGG | 0.686541 | 7_3:+69319961 | Msa1120130:CDS |
| AGAGCACACAAGGAATAGAG+GGG | 0.718530 | 7_3:+69319920 | Msa1120130:CDS |
| CGGTGAGACCTTCTATACGG+CGG | 0.729242 | 7_3:-69316641 | None:intergenic |
| CGTGAGAGTTCCAATCGCAG+CGG | 0.733388 | 7_3:-69316569 | None:intergenic |
| CTATTGCGACACAAGAAACG+CGG | 0.741192 | 7_3:+69316380 | Msa1120130:CDS |
| TGCGATTGGAACTCTCACGG+CGG | 0.780073 | 7_3:+69316573 | Msa1120130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAGATTGTTAATTTTAAT+TGG | + | chr7_3:69318102-69318121 | Msa1120130:intron | 10.0% |
| !!! | TATTTTTTATTTTTTGTAGT+TGG | - | chr7_3:69320086-69320105 | None:intergenic | 10.0% |
| !!! | TTAAGTTGATTAATCTAAAA+AGG | - | chr7_3:69317089-69317108 | None:intergenic | 15.0% |
| !!! | TGTTAATTTTAATTGGTTAA+AGG | + | chr7_3:69318109-69318128 | Msa1120130:intron | 15.0% |
| !!! | GTTAATTTTAATTGGTTAAA+GGG | + | chr7_3:69318110-69318129 | Msa1120130:intron | 15.0% |
| !!! | ACTTTTTCTACATTATAAAT+TGG | - | chr7_3:69318702-69318721 | None:intergenic | 15.0% |
| !!! | GAAAAAATAATCTCAAATTT+TGG | + | chr7_3:69318748-69318767 | Msa1120130:intron | 15.0% |
| !!! | CATTAATTCAACTTTTAATA+TGG | + | chr7_3:69318807-69318826 | Msa1120130:intron | 15.0% |
| !!! | TGTATTATTATTTTCAACTT+GGG | - | chr7_3:69320125-69320144 | None:intergenic | 15.0% |
| !! | AAATTAAGCAAAGAAGTAAA+CGG | - | chr7_3:69316906-69316925 | None:intergenic | 20.0% |
| !! | AAGAGAAATAGTAATGATTA+TGG | + | chr7_3:69316951-69316970 | Msa1120130:CDS | 20.0% |
| !!! | GATAATAGTAGTTTTTTTAG+AGG | + | chr7_3:69317182-69317201 | Msa1120130:intron | 20.0% |
| !!! | ATTTTCGTCTATCTAAAAAA+AGG | + | chr7_3:69317521-69317540 | Msa1120130:intron | 20.0% |
| !!! | AAATATTTTACACATTCACA+AGG | + | chr7_3:69317654-69317673 | Msa1120130:intron | 20.0% |
| !!! | ATTACATTTTTATTGACTGA+TGG | + | chr7_3:69317807-69317826 | Msa1120130:intron | 20.0% |
| !!! | TTACATTTTTATTGACTGAT+GGG | + | chr7_3:69317808-69317827 | Msa1120130:intron | 20.0% |
| !! | ATAATGAATTTGAGTAAACT+AGG | + | chr7_3:69317834-69317853 | Msa1120130:intron | 20.0% |
| !!! | TAATAGGCTTTTAATTTTAC+TGG | + | chr7_3:69317969-69317988 | Msa1120130:intron | 20.0% |
| !!! | TGAATTTTTCTCATTAGTTT+CGG | + | chr7_3:69317994-69318013 | Msa1120130:intron | 20.0% |
| !!! | AAATATTTCAAAAGGTACAA+GGG | - | chr7_3:69318367-69318386 | None:intergenic | 20.0% |
| !!! | AAAATATTTCAAAAGGTACA+AGG | - | chr7_3:69318368-69318387 | None:intergenic | 20.0% |
| !! | AAAAATTCAATGACCTTAAA+TGG | - | chr7_3:69318411-69318430 | None:intergenic | 20.0% |
| !! | TGCATTAATTGAGTTTATTA+CGG | + | chr7_3:69318436-69318455 | Msa1120130:intron | 20.0% |
| !! | AAACTAAAATCTACAAAGAA+TGG | - | chr7_3:69318668-69318687 | None:intergenic | 20.0% |
| !! | TTAAGGAAATGTGATTTAAA+TGG | + | chr7_3:69318972-69318991 | Msa1120130:intron | 20.0% |
| !! | TATGACAATGTAGTAAATAA+AGG | - | chr7_3:69319630-69319649 | None:intergenic | 20.0% |
| !! | TTATCCAAAATTGAATGATT+GGG | + | chr7_3:69320056-69320075 | Msa1120130:intron | 20.0% |
| !!! | GTATTATTATTTTCAACTTG+GGG | - | chr7_3:69320124-69320143 | None:intergenic | 20.0% |
| !!! | GTGTATTATTATTTTCAACT+TGG | - | chr7_3:69320126-69320145 | None:intergenic | 20.0% |
| !! | GTTGAAAATAATAATACACT+TGG | + | chr7_3:69320127-69320146 | Msa1120130:intron | 20.0% |
| !! | TATATCAGAGAAATATTAAC+AGG | + | chr7_3:69320410-69320429 | Msa1120130:intron | 20.0% |
| !!! | TTATTGATTTGATTCTTTCT+TGG | + | chr7_3:69320468-69320487 | Msa1120130:three_prime_UTR | 20.0% |
| !!! | ATCGTTTTAAGAGAATACTT+TGG | - | chr7_3:69316345-69316364 | None:intergenic | 25.0% |
| ! | AATGATTATGGAAATGAATC+TGG | + | chr7_3:69316963-69316982 | Msa1120130:CDS | 25.0% |
| ! | AAACACAAATTAACAAACCT+GGG | - | chr7_3:69317027-69317046 | None:intergenic | 25.0% |
| ! | AAAACACAAATTAACAAACC+TGG | - | chr7_3:69317028-69317047 | None:intergenic | 25.0% |
| ! | TAAACTTTAACCACAATGAA+AGG | - | chr7_3:69317363-69317382 | None:intergenic | 25.0% |
| ! | GAATGTGTAAAATATTTGAC+TGG | - | chr7_3:69317651-69317670 | None:intergenic | 25.0% |
| ! | TATTCATATTTATTGTCCGA+CGG | + | chr7_3:69317732-69317751 | Msa1120130:intron | 25.0% |
| ! | GTAGAATTGACATGAAAATT+TGG | + | chr7_3:69317885-69317904 | Msa1120130:intron | 25.0% |
| !! | GAACTTTTACTCTTGTTAAT+AGG | + | chr7_3:69317953-69317972 | Msa1120130:intron | 25.0% |
| ! | ACAGGCAAAAATATTTCAAA+AGG | - | chr7_3:69318375-69318394 | None:intergenic | 25.0% |
| ! | AATATGAATTGCTCAACATT+TGG | + | chr7_3:69318615-69318634 | Msa1120130:CDS | 25.0% |
| !! | AACACACTTAACAATTTTTC+TGG | + | chr7_3:69318784-69318803 | Msa1120130:intron | 25.0% |
| !! | TCAACTTTTAATATGGTACA+AGG | + | chr7_3:69318814-69318833 | Msa1120130:intron | 25.0% |
| ! | ATTGAATTGCAAACTGTTTA+AGG | + | chr7_3:69318955-69318974 | Msa1120130:intron | 25.0% |
| ! | TCTATTAATATGCTAGTATG+AGG | + | chr7_3:69319089-69319108 | Msa1120130:intron | 25.0% |
| !!! | GCAACTTTCTTTTTCAAAAT+TGG | - | chr7_3:69319168-69319187 | None:intergenic | 25.0% |
| ! | TAAATAAAGGCCAAATCATA+TGG | - | chr7_3:69319617-69319636 | None:intergenic | 25.0% |
| !! | ATTTTGCAAAGACAAACAAT+TGG | - | chr7_3:69319697-69319716 | None:intergenic | 25.0% |
| ! | TGTTATGGATTCAATCAATT+TGG | - | chr7_3:69319811-69319830 | None:intergenic | 25.0% |
| ! | TTCATTTGTATTTGCTTATG+AGG | - | chr7_3:69320011-69320030 | None:intergenic | 25.0% |
| !! | TTTTGGATAAGTAATCGTAT+AGG | - | chr7_3:69320046-69320065 | None:intergenic | 25.0% |
| ! | CTTATCCAAAATTGAATGAT+TGG | + | chr7_3:69320055-69320074 | Msa1120130:intron | 25.0% |
| ! | TATCCAAAATTGAATGATTG+GGG | + | chr7_3:69320057-69320076 | Msa1120130:intron | 25.0% |
| !!! | TTACTTATGTGCTTATTTTG+TGG | + | chr7_3:69320157-69320176 | Msa1120130:intron | 25.0% |
| ! | TTATATGCATACACATACAA+GGG | - | chr7_3:69320339-69320358 | None:intergenic | 25.0% |
| ! | ATTATATGCATACACATACA+AGG | - | chr7_3:69320340-69320359 | None:intergenic | 25.0% |
| !!! | TTTATAGTCAGTTGATAATG+TGG | - | chr7_3:69320533-69320552 | None:intergenic | 25.0% |
| TACTTTGGTTGTAAGAAAGA+AGG | - | chr7_3:69316330-69316349 | None:intergenic | 30.0% | |
| ! | TTTTCGTCTGAATTTGATGT+TGG | + | chr7_3:69316924-69316943 | Msa1120130:CDS | 30.0% |
| AACACAAATTAACAAACCTG+GGG | - | chr7_3:69317026-69317045 | None:intergenic | 30.0% | |
| AGGAAGATAAGTAGTTGAAA+AGG | + | chr7_3:69317202-69317221 | Msa1120130:intron | 30.0% | |
| GGAAGATAAGTAGTTGAAAA+GGG | + | chr7_3:69317203-69317222 | Msa1120130:intron | 30.0% | |
| !!! | AAGTTTTGTTCCTTTCATTG+TGG | + | chr7_3:69317350-69317369 | Msa1120130:intron | 30.0% |
| ATTGGCAAAAAATGCCTAAA+TGG | + | chr7_3:69317412-69317431 | Msa1120130:intron | 30.0% | |
| AAGGTTTAGTTACATTACCA+AGG | + | chr7_3:69317540-69317559 | Msa1120130:intron | 30.0% | |
| ! | ATTTTACACATTCACAAGGT+CGG | + | chr7_3:69317658-69317677 | Msa1120130:intron | 30.0% |
| ATGCAAGATAACTACACATT+AGG | - | chr7_3:69318208-69318227 | None:intergenic | 30.0% | |
| TCAAGAGATATGACATATGA+TGG | + | chr7_3:69318543-69318562 | Msa1120130:CDS | 30.0% | |
| !!! | CAATGATTTTGGAATCGATA+AGG | - | chr7_3:69318583-69318602 | None:intergenic | 30.0% |
| ATCTCTGAGCTTAATGTATT+AGG | + | chr7_3:69318864-69318883 | Msa1120130:intron | 30.0% | |
| ! | TTAATTCCTTGGTAGACTTT+TGG | - | chr7_3:69318895-69318914 | None:intergenic | 30.0% |
| ATGTGATTTAAATGGTTGAG+TGG | + | chr7_3:69318980-69318999 | Msa1120130:intron | 30.0% | |
| GATTCAAGCTCTTTAATGTA+AGG | + | chr7_3:69319038-69319057 | Msa1120130:intron | 30.0% | |
| CTTTAATGTAAGGACTTTGA+TGG | + | chr7_3:69319048-69319067 | Msa1120130:intron | 30.0% | |
| !! | TTTTGAAAAAGAAAGTTGCG+TGG | + | chr7_3:69319169-69319188 | Msa1120130:intron | 30.0% |
| TTTGAAAAAGAAAGTTGCGT+GGG | + | chr7_3:69319170-69319189 | Msa1120130:intron | 30.0% | |
| !! | ACAGTTTTGTCTGTATGTAT+AGG | - | chr7_3:69319218-69319237 | None:intergenic | 30.0% |
| TATACATACAGACAAAACTG+TGG | + | chr7_3:69319217-69319236 | Msa1120130:intron | 30.0% | |
| ATACATACAGACAAAACTGT+GGG | + | chr7_3:69319218-69319237 | Msa1120130:intron | 30.0% | |
| ACATTGAATCAAAGCAATGT+AGG | - | chr7_3:69319244-69319263 | None:intergenic | 30.0% | |
| !! | TGTAGCTTTAATGTTGAACT+AGG | - | chr7_3:69319540-69319559 | None:intergenic | 30.0% |
| AGCACTATTTCCATATGATT+TGG | + | chr7_3:69319604-69319623 | Msa1120130:intron | 30.0% | |
| TCATGCTTGGTTTATCTATA+GGG | + | chr7_3:69319658-69319677 | Msa1120130:intron | 30.0% | |
| GCAAAATTTGCAGAATCAAT+CGG | + | chr7_3:69319710-69319729 | Msa1120130:intron | 30.0% | |
| TTTCTACTTTCTTCTTCACA+TGG | - | chr7_3:69319752-69319771 | None:intergenic | 30.0% | |
| ATTGAATCCATAACATACAG+TGG | + | chr7_3:69319816-69319835 | Msa1120130:CDS | 30.0% | |
| ATCCAAAATTGAATGATTGG+GGG | + | chr7_3:69320058-69320077 | Msa1120130:intron | 30.0% | |
| !!! | AACAGGTTCTAGTTTTAATG+AGG | + | chr7_3:69320427-69320446 | Msa1120130:three_prime_UTR | 30.0% |
| ! | TTTTAATGAGGAATTCTGTC+AGG | + | chr7_3:69320439-69320458 | Msa1120130:three_prime_UTR | 30.0% |
| !! | TTTTGCAGTTTTGGCAGATT+TGG | - | chr7_3:69316500-69316519 | None:intergenic | 35.0% |
| ! | GTGACATTGAACTAGGTTTT+CGG | - | chr7_3:69316550-69316569 | None:intergenic | 35.0% |
| TTCAAATTCCGCTACGAAAA+CGG | - | chr7_3:69316727-69316746 | None:intergenic | 35.0% | |
| ! | ATGAATCTGGTCTTCTTCTT+TGG | + | chr7_3:69316976-69316995 | Msa1120130:CDS | 35.0% |
| ! | TGAATCTGGTCTTCTTCTTT+GGG | + | chr7_3:69316977-69316996 | Msa1120130:CDS | 35.0% |
| !!! | CATTTTTTGCCAATTGAGCT+AGG | - | chr7_3:69317406-69317425 | None:intergenic | 35.0% |
| CAAAAAATGCCTAAATGGCT+AGG | + | chr7_3:69317417-69317436 | Msa1120130:intron | 35.0% | |
| TTCGATGGAGTTAGATATAG+AGG | + | chr7_3:69317563-69317582 | Msa1120130:intron | 35.0% | |
| ATGGAGTTAGATATAGAGGA+AGG | + | chr7_3:69317567-69317586 | Msa1120130:intron | 35.0% | |
| TGGAGTTAGATATAGAGGAA+GGG | + | chr7_3:69317568-69317587 | Msa1120130:intron | 35.0% | |
| AAATATTTGACTGGCAATCC+AGG | - | chr7_3:69317642-69317661 | None:intergenic | 35.0% | |
| ACCAGAGGTAATAACATTCA+AGG | - | chr7_3:69317760-69317779 | None:intergenic | 35.0% | |
| TTGAATGTTATTACCTCTGG+TGG | + | chr7_3:69317759-69317778 | Msa1120130:intron | 35.0% | |
| ! | TCTCATTAGTTTCGGTTACT+AGG | + | chr7_3:69318002-69318021 | Msa1120130:intron | 35.0% |
| GAAACTAGCAAAGAATGGTA+AGG | - | chr7_3:69318040-69318059 | None:intergenic | 35.0% | |
| AATTGGTTAAAGGGTGATGT+AGG | + | chr7_3:69318119-69318138 | Msa1120130:intron | 35.0% | |
| ATTGGTTAAAGGGTGATGTA+GGG | + | chr7_3:69318120-69318139 | Msa1120130:intron | 35.0% | |
| CTCCTACTTGACAATGAAAT+TGG | + | chr7_3:69318171-69318190 | Msa1120130:intron | 35.0% | |
| GACCAATTTCATTGTCAAGT+AGG | - | chr7_3:69318176-69318195 | None:intergenic | 35.0% | |
| ACAGAAAGCTGCAAATAAGA+TGG | - | chr7_3:69318245-69318264 | None:intergenic | 35.0% | |
| TAAAATCGCAGTTGAGATCT+TGG | + | chr7_3:69318318-69318337 | Msa1120130:intron | 35.0% | |
| ! | TTTTTGCCTGTCCTTAAGTT+AGG | + | chr7_3:69318384-69318403 | Msa1120130:intron | 35.0% |
| ! | TTTTGCCTGTCCTTAAGTTA+GGG | + | chr7_3:69318385-69318404 | Msa1120130:intron | 35.0% |
| ! | AGATATGACATATGATGGTG+TGG | + | chr7_3:69318548-69318567 | Msa1120130:CDS | 35.0% |
| ! | TGCACATCTTGCAATGATTT+TGG | - | chr7_3:69318594-69318613 | None:intergenic | 35.0% |
| GTAGGGTAGTATTAATTCCT+TGG | - | chr7_3:69318906-69318925 | None:intergenic | 35.0% | |
| ACAGCAATTGACAAGTAGTA+GGG | - | chr7_3:69318923-69318942 | None:intergenic | 35.0% | |
| TACAGCAATTGACAAGTAGT+AGG | - | chr7_3:69318924-69318943 | None:intergenic | 35.0% | |
| TGGGTTTAATAGCTTGGAAA+AGG | + | chr7_3:69319189-69319208 | Msa1120130:intron | 35.0% | |
| TTCAATGTACAGAGTTCACA+TGG | + | chr7_3:69319256-69319275 | Msa1120130:intron | 35.0% | |
| TCAATGTACAGAGTTCACAT+GGG | + | chr7_3:69319257-69319276 | Msa1120130:intron | 35.0% | |
| TGTCACTGTGACATTAAATC+TGG | + | chr7_3:69319309-69319328 | Msa1120130:intron | 35.0% | |
| GTCACTGTGACATTAAATCT+GGG | + | chr7_3:69319310-69319329 | Msa1120130:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | chr7_3:69319370-69319389 | Msa1120130:intron | 35.0% | |
| ! | TATGTCACCCAAGTATTTTC+CGG | + | chr7_3:69319444-69319463 | Msa1120130:intron | 35.0% |
| !! | GGAAGATTTGCTATGAATCT+TGG | - | chr7_3:69319504-69319523 | None:intergenic | 35.0% |
| GAACTAGGTACAACTAAAGT+TGG | - | chr7_3:69319525-69319544 | None:intergenic | 35.0% | |
| TCATATATTGCTGTCATGCT+TGG | + | chr7_3:69319645-69319664 | Msa1120130:intron | 35.0% | |
| GTCATGCTTGGTTTATCTAT+AGG | + | chr7_3:69319657-69319676 | Msa1120130:intron | 35.0% | |
| ACAAACAATTGGTCAAGCAT+TGG | - | chr7_3:69319686-69319705 | None:intergenic | 35.0% | |
| AGCAACAAGAAAACTAGAGA+TGG | + | chr7_3:69319771-69319790 | Msa1120130:CDS | 35.0% | |
| GCAACAAGAAAACTAGAGAT+GGG | + | chr7_3:69319772-69319791 | Msa1120130:CDS | 35.0% | |
| CTCAAAAGATGTTCCATAAC+TGG | - | chr7_3:69319855-69319874 | None:intergenic | 35.0% | |
| ! | GTTATGGAACATCTTTTGAG+TGG | + | chr7_3:69319855-69319874 | Msa1120130:CDS | 35.0% |
| AGCAACATAAATGCCAAGAT+TGG | + | chr7_3:69319891-69319910 | Msa1120130:CDS | 35.0% | |
| TCCAAAATTGAATGATTGGG+GGG | + | chr7_3:69320059-69320078 | Msa1120130:intron | 35.0% | |
| GCAACTGATGATATTCAAGA+AGG | + | chr7_3:69320276-69320295 | Msa1120130:CDS | 35.0% | |
| GCAAACTAAACAGAGTTTCG+CGG | - | chr7_3:69316427-69316446 | None:intergenic | 40.0% | |
| AGTAGAAACGATCTCGTGAA+CGG | - | chr7_3:69316676-69316695 | None:intergenic | 40.0% | |
| TCACGAGATCGTTTCTACTT+TGG | + | chr7_3:69316677-69316696 | Msa1120130:CDS | 40.0% | |
| CACGAGATCGTTTCTACTTT+GGG | + | chr7_3:69316678-69316697 | Msa1120130:CDS | 40.0% | |
| !! | GTTTTCGTAGCGGAATTTGA+AGG | + | chr7_3:69316726-69316745 | Msa1120130:CDS | 40.0% |
| TCATCCCTATTCTTCACAAC+CGG | - | chr7_3:69316762-69316781 | None:intergenic | 40.0% | |
| ACAAATTAACAAACCTGGGG+AGG | - | chr7_3:69317023-69317042 | None:intergenic | 40.0% | |
| ACGTAAAGTCCTAGCTCAAT+TGG | + | chr7_3:69317394-69317413 | Msa1120130:intron | 40.0% | |
| ATAGTCTAGCCTAGCCATTT+AGG | - | chr7_3:69317429-69317448 | None:intergenic | 40.0% | |
| TAGGCTAGACTATGTGATGA+GGG | + | chr7_3:69317436-69317455 | Msa1120130:intron | 40.0% | |
| GACGAAATGACAATCACGTT+TGG | - | chr7_3:69317500-69317519 | None:intergenic | 40.0% | |
| GTTACATTACCAAGGTTCGA+TGG | + | chr7_3:69317548-69317567 | Msa1120130:intron | 40.0% | |
| TATCTAACTCCATCGAACCT+TGG | - | chr7_3:69317560-69317579 | None:intergenic | 40.0% | |
| GGAGTTAGATATAGAGGAAG+GGG | + | chr7_3:69317569-69317588 | Msa1120130:intron | 40.0% | |
| ACAAAGGTTCAATCCTTGTC+AGG | + | chr7_3:69317608-69317627 | Msa1120130:intron | 40.0% | |
| !! | AATAACATTCAAGGCACCGT+CGG | - | chr7_3:69317751-69317770 | None:intergenic | 40.0% |
| GCCTTGAATGTTATTACCTC+TGG | + | chr7_3:69317756-69317775 | Msa1120130:intron | 40.0% | |
| AATGTTATTACCTCTGGTGG+AGG | + | chr7_3:69317762-69317781 | Msa1120130:intron | 40.0% | |
| ATGTTATTACCTCTGGTGGA+GGG | + | chr7_3:69317763-69317782 | Msa1120130:intron | 40.0% | |
| AGTAAACTAGGCTGCATTGT+TGG | + | chr7_3:69317846-69317865 | Msa1120130:intron | 40.0% | |
| ! | TGTTGGTTACTAGGTGAATG+AGG | + | chr7_3:69317863-69317882 | Msa1120130:intron | 40.0% |
| ACTAGCAAAGAATGGTAAGG+AGG | - | chr7_3:69318037-69318056 | None:intergenic | 40.0% | |
| GAAGGGAAACTAGCAAAGAA+TGG | - | chr7_3:69318045-69318064 | None:intergenic | 40.0% | |
| AAGTACCAGATAGAGAGGAA+GGG | - | chr7_3:69318062-69318081 | None:intergenic | 40.0% | |
| TGAAGCAAACCAACATATGC+AGG | + | chr7_3:69318276-69318295 | Msa1120130:intron | 40.0% | |
| AATGCTCTTCCTGCATATGT+TGG | - | chr7_3:69318288-69318307 | None:intergenic | 40.0% | |
| CCTTAAATGGCCCTAACTTA+AGG | - | chr7_3:69318398-69318417 | None:intergenic | 40.0% | |
| CCTTAAGTTAGGGCCATTTA+AGG | + | chr7_3:69318395-69318414 | Msa1120130:intron | 40.0% | |
| TTGTCTTTGTACGTTTGTGC+AGG | + | chr7_3:69318497-69318516 | Msa1120130:intron | 40.0% | |
| GAATCACCAAAAGTCTACCA+AGG | + | chr7_3:69318886-69318905 | Msa1120130:intron | 40.0% | |
| CAATGTACAGAGTTCACATG+GGG | + | chr7_3:69319258-69319277 | Msa1120130:intron | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | chr7_3:69319369-69319388 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | + | chr7_3:69319369-69319388 | Msa1120130:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr7_3:69319321-69319340 | None:intergenic | 40.0% | |
| GTCACCGTGACATTAAATCT+GGG | - | chr7_3:69319422-69319441 | None:intergenic | 40.0% | |
| TGTCACCGTGACATTAAATC+TGG | - | chr7_3:69319423-69319442 | None:intergenic | 40.0% | |
| ! | ATGTCACCCAAGTATTTTCC+GGG | + | chr7_3:69319445-69319464 | Msa1120130:intron | 40.0% |
| ! | AGAGGTCGGCAAGATTTTAT+TGG | + | chr7_3:69319478-69319497 | Msa1120130:intron | 40.0% |
| TTCCATAACTGGTACACTGT+CGG | - | chr7_3:69319844-69319863 | None:intergenic | 40.0% | |
| ! | CATAAATGCCAAGATTGGCT+TGG | + | chr7_3:69319896-69319915 | Msa1120130:CDS | 40.0% |
| ! | AAGAGCACACAAGGAATAGA+GGG | + | chr7_3:69319919-69319938 | Msa1120130:CDS | 40.0% |
| AGGAGAAGAAGAAAACTCGA+AGG | + | chr7_3:69319961-69319980 | Msa1120130:CDS | 40.0% | |
| CCAAAATTGAATGATTGGGG+GGG | + | chr7_3:69320060-69320079 | Msa1120130:intron | 40.0% | |
| AGCACATTCGCTATGAATCA+AGG | + | chr7_3:69320205-69320224 | Msa1120130:CDS | 40.0% | |
| CATTCGCTATGAATCAAGGA+AGG | + | chr7_3:69320209-69320228 | Msa1120130:CDS | 40.0% | |
| CTATGAATCAAGGAAGGCTA+GGG | + | chr7_3:69320215-69320234 | Msa1120130:CDS | 40.0% | |
| ATACGAGAAAGAGAGTGAGA+GGG | + | chr7_3:69320241-69320260 | Msa1120130:CDS | 40.0% | |
| ACATACAAGGGAAATGCCAT+GGG | - | chr7_3:69320327-69320346 | None:intergenic | 40.0% | |
| CTTGTGTCGCAATAGTCACA+CGG | - | chr7_3:69316375-69316394 | None:intergenic | 45.0% | |
| CTATTGCGACACAAGAAACG+CGG | + | chr7_3:69316380-69316399 | Msa1120130:CDS | 45.0% | |
| TGGTGGAAAGATGAAGAGGT+GGG | - | chr7_3:69316612-69316631 | None:intergenic | 45.0% | |
| AACCGGTGAGACCTTCTATA+CGG | - | chr7_3:69316647-69316666 | None:intergenic | 45.0% | |
| GCTACGAAAACGGAGTCATT+CGG | - | chr7_3:69316717-69316736 | None:intergenic | 45.0% | |
| ! | GAATGACTCCGTTTTCGTAG+CGG | + | chr7_3:69316716-69316735 | Msa1120130:CDS | 45.0% |
| TGGTTCCGGTTGTGAAGAAT+AGG | + | chr7_3:69316754-69316773 | Msa1120130:CDS | 45.0% | |
| GGTTCCGGTTGTGAAGAATA+GGG | + | chr7_3:69316755-69316774 | Msa1120130:CDS | 45.0% | |
| GGTTGTGAAGAATAGGGATG+AGG | + | chr7_3:69316761-69316780 | Msa1120130:CDS | 45.0% | |
| TAGGGATGAGGTGTATGAAC+AGG | + | chr7_3:69316773-69316792 | Msa1120130:CDS | 45.0% | |
| TGCGAAGAGGAAGAGGAATT+TGG | + | chr7_3:69316806-69316825 | Msa1120130:CDS | 45.0% | |
| GAAGAGGAAGAGGAATTTGG+AGG | + | chr7_3:69316809-69316828 | Msa1120130:CDS | 45.0% | |
| CTAGGCTAGACTATGTGATG+AGG | + | chr7_3:69317435-69317454 | Msa1120130:intron | 45.0% | |
| GAAACTCACACACACAAGTG+GGG | - | chr7_3:69317478-69317497 | None:intergenic | 45.0% | |
| GGAAACTCACACACACAAGT+GGG | - | chr7_3:69317479-69317498 | None:intergenic | 45.0% | |
| TGGAAACTCACACACACAAG+TGG | - | chr7_3:69317480-69317499 | None:intergenic | 45.0% | |
| TTAGACTGCGTGGCAAACAA+AGG | + | chr7_3:69317592-69317611 | Msa1120130:intron | 45.0% | |
| ! | AGGCTGCATTGTTGGTTACT+AGG | + | chr7_3:69317854-69317873 | Msa1120130:intron | 45.0% |
| ! | AGAATGGTAAGGAGGTGCAA+TGG | - | chr7_3:69318029-69318048 | None:intergenic | 45.0% |
| AGTTTCCCTTCCTCTCTATC+TGG | + | chr7_3:69318054-69318073 | Msa1120130:intron | 45.0% | |
| CAAGTACCAGATAGAGAGGA+AGG | - | chr7_3:69318063-69318082 | None:intergenic | 45.0% | |
| AACGCAAGTACCAGATAGAG+AGG | - | chr7_3:69318067-69318086 | None:intergenic | 45.0% | |
| AATGGCCCTAACTTAAGGAC+AGG | - | chr7_3:69318393-69318412 | None:intergenic | 45.0% | |
| TTTGTACGTTTGTGCAGGTC+TGG | + | chr7_3:69318502-69318521 | Msa1120130:intron | 45.0% | |
| TTGTACGTTTGTGCAGGTCT+GGG | + | chr7_3:69318503-69318522 | Msa1120130:intron | 45.0% | |
| TGGTTGAGTGGATGATGCAA+AGG | + | chr7_3:69318992-69319011 | Msa1120130:intron | 45.0% | |
| GTTGCGTGGGTTTAATAGCT+TGG | + | chr7_3:69319183-69319202 | Msa1120130:intron | 45.0% | |
| ACACATTGCCACACAACATC+TGG | + | chr7_3:69319342-69319361 | Msa1120130:intron | 45.0% | |
| CACATTGCCACACAACATCT+GGG | + | chr7_3:69319343-69319362 | Msa1120130:intron | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr7_3:69319396-69319415 | None:intergenic | 45.0% |
| CACAACACAACACCTTTGTG+TGG | + | chr7_3:69319396-69319415 | Msa1120130:intron | 45.0% | |
| GTGGCCCAGATTTAATGTCA+CGG | + | chr7_3:69319415-69319434 | Msa1120130:intron | 45.0% | |
| ! | TGTCACCCAAGTATTTTCCG+GGG | + | chr7_3:69319446-69319465 | Msa1120130:intron | 45.0% |
| ! | GAAGAGCACACAAGGAATAG+AGG | + | chr7_3:69319918-69319937 | Msa1120130:CDS | 45.0% |
| AGAGCACACAAGGAATAGAG+GGG | + | chr7_3:69319920-69319939 | Msa1120130:CDS | 45.0% | |
| ATAGAGGGGATGCCATGTTA+CGG | + | chr7_3:69319934-69319953 | Msa1120130:CDS | 45.0% | |
| CTTCTCCTTGTACCGTAACA+TGG | - | chr7_3:69319949-69319968 | None:intergenic | 45.0% | |
| ! | CCCCCCCAATCATTCAATTT+TGG | - | chr7_3:69320063-69320082 | None:intergenic | 45.0% |
| TGTGGCATCAAACTTTGCAC+AGG | + | chr7_3:69320175-69320194 | Msa1120130:intron | 45.0% | |
| GCTATGAATCAAGGAAGGCT+AGG | + | chr7_3:69320214-69320233 | Msa1120130:CDS | 45.0% | |
| GATACGAGAAAGAGAGTGAG+AGG | + | chr7_3:69320240-69320259 | Msa1120130:CDS | 45.0% | |
| !! | AGTGAGAGGGCGATTTGTTA+AGG | + | chr7_3:69320254-69320273 | Msa1120130:CDS | 45.0% |
| ATGGGATGAGGTTTCTTGGA+AGG | - | chr7_3:69320309-69320328 | None:intergenic | 45.0% | |
| TTCCAAGAAACCTCATCCCA+TGG | + | chr7_3:69320308-69320327 | Msa1120130:three_prime_UTR | 45.0% | |
| CACATACAAGGGAAATGCCA+TGG | - | chr7_3:69320328-69320347 | None:intergenic | 45.0% | |
| !!! | AAAAAAACATTTTTTTTTTA+GGG | - | chr7_3:69317158-69317177 | None:intergenic | 5.0% |
| !!! | AAAAAAAACATTTTTTTTTT+AGG | - | chr7_3:69317159-69317178 | None:intergenic | 5.0% |
| AAACAGAGTTTCGCGGAGTC+TGG | - | chr7_3:69316420-69316439 | None:intergenic | 50.0% | |
| !!! | CGGCGTCGTTTTTGCAGTTT+TGG | - | chr7_3:69316509-69316528 | None:intergenic | 50.0% |
| GGTGAAGCAACGAACTGAAG+CGG | - | chr7_3:69316529-69316548 | None:intergenic | 50.0% | |
| TTCAATGTCACCGCTGCGAT+TGG | + | chr7_3:69316559-69316578 | Msa1120130:CDS | 50.0% | |
| GGTGGAAAGATGAAGAGGTG+GGG | - | chr7_3:69316611-69316630 | None:intergenic | 50.0% | |
| ! | GTGGTGGAAAGATGAAGAGG+TGG | - | chr7_3:69316613-69316632 | None:intergenic | 50.0% |
| !! | GTGGTGGTGGAAAGATGAAG+AGG | - | chr7_3:69316616-69316635 | None:intergenic | 50.0% |
| GAAACGATCTCGTGAACGGA+AGG | - | chr7_3:69316672-69316691 | None:intergenic | 50.0% | |
| ! | CGTAGCGGAATTTGAAGGTC+CGG | + | chr7_3:69316731-69316750 | Msa1120130:CDS | 50.0% |
| ATTTGAAGGTCCGGTGGTTC+CGG | + | chr7_3:69316740-69316759 | Msa1120130:CDS | 50.0% | |
| TTCTTCACAACCGGAACCAC+CGG | - | chr7_3:69316753-69316772 | None:intergenic | 50.0% | |
| GGATGAGGTGTATGAACAGG+TGG | + | chr7_3:69316776-69316795 | Msa1120130:CDS | 50.0% | |
| TGAGGTGTATGAACAGGTGG+TGG | + | chr7_3:69316779-69316798 | Msa1120130:CDS | 50.0% | |
| TGGAAGTTGCGAAGAGGAAG+AGG | + | chr7_3:69316799-69316818 | Msa1120130:CDS | 50.0% | |
| TGATGAGGGTTTGAATCCCC+TGG | + | chr7_3:69317450-69317469 | Msa1120130:intron | 50.0% | |
| GGTTCAATCCTTGTCAGGAG+AGG | + | chr7_3:69317613-69317632 | Msa1120130:intron | 50.0% | |
| TCACAAGGTCGGCATATCTG+TGG | + | chr7_3:69317669-69317688 | Msa1120130:intron | 50.0% | |
| TGTACAGAGTTCACATGGGG+AGG | + | chr7_3:69319261-69319280 | Msa1120130:intron | 50.0% | |
| GTACAGAGTTCACATGGGGA+GGG | + | chr7_3:69319262-69319281 | Msa1120130:intron | 50.0% | |
| GTGTGGCAATGTGTGTTGTG+TGG | - | chr7_3:69319336-69319355 | None:intergenic | 50.0% | |
| ! | ACCCAAGTATTTTCCGGGGA+GGG | + | chr7_3:69319450-69319469 | Msa1120130:intron | 50.0% |
| TCCCTCCCCGGAAAATACTT+GGG | - | chr7_3:69319454-69319473 | None:intergenic | 50.0% | |
| GTGCTCTTCCAAGCCAATCT+TGG | - | chr7_3:69319907-69319926 | None:intergenic | 50.0% | |
| !! | TTGGCTTGGAAGAGCACACA+AGG | + | chr7_3:69319910-69319929 | Msa1120130:CDS | 50.0% |
| GGATGCCATGTTACGGTACA+AGG | + | chr7_3:69319941-69319960 | Msa1120130:CDS | 50.0% | |
| TGCCATGGGATGAGGTTTCT+TGG | - | chr7_3:69320313-69320332 | None:intergenic | 50.0% | |
| AAGGGAAATGCCATGGGATG+AGG | - | chr7_3:69320321-69320340 | None:intergenic | 50.0% | |
| CTTGAGTGCGAGTGCGTTTG+CGG | - | chr7_3:69316466-69316485 | None:intergenic | 55.0% | |
| CGCAGCGGTGACATTGAACT+AGG | - | chr7_3:69316557-69316576 | None:intergenic | 55.0% | |
| CGTGAGAGTTCCAATCGCAG+CGG | - | chr7_3:69316572-69316591 | None:intergenic | 55.0% | |
| CGCTGCGATTGGAACTCTCA+CGG | + | chr7_3:69316570-69316589 | Msa1120130:CDS | 55.0% | |
| TGCGATTGGAACTCTCACGG+CGG | + | chr7_3:69316573-69316592 | Msa1120130:CDS | 55.0% | |
| TGAGACCTTCTATACGGCGG+CGG | - | chr7_3:69316641-69316660 | None:intergenic | 55.0% | |
| CGGTGAGACCTTCTATACGG+CGG | - | chr7_3:69316644-69316663 | None:intergenic | 55.0% | |
| CGCCGTATAGAAGGTCTCAC+CGG | + | chr7_3:69316642-69316661 | Msa1120130:CDS | 55.0% | |
| CTCGTGAACGGAAGGACAAC+CGG | - | chr7_3:69316664-69316683 | None:intergenic | 55.0% | |
| AGCGGAATTTGAAGGTCCGG+TGG | + | chr7_3:69316734-69316753 | Msa1120130:CDS | 55.0% | |
| !! | AGGTGGTGGAAGTTGCGAAG+AGG | + | chr7_3:69316793-69316812 | Msa1120130:CDS | 55.0% |
| ACACACAAGTGGGGAACCAG+GGG | - | chr7_3:69317469-69317488 | None:intergenic | 55.0% | |
| CACACACAAGTGGGGAACCA+GGG | - | chr7_3:69317470-69317489 | None:intergenic | 55.0% | |
| ACACACACAAGTGGGGAACC+AGG | - | chr7_3:69317471-69317490 | None:intergenic | 55.0% | |
| CTAGAGATTCCCTCCACCAG+AGG | - | chr7_3:69317775-69317794 | None:intergenic | 55.0% | |
| CTCTGGTGGAGGGAATCTCT+AGG | + | chr7_3:69317773-69317792 | Msa1120130:intron | 55.0% | |
| AGAGTTCACATGGGGAGGGA+CGG | + | chr7_3:69319266-69319285 | Msa1120130:intron | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | - | chr7_3:69319353-69319372 | None:intergenic | 55.0% | |
| ! | CACCCAAGTATTTTCCGGGG+AGG | + | chr7_3:69319449-69319468 | Msa1120130:intron | 55.0% |
| GTCCCTCCCCGGAAAATACT+TGG | - | chr7_3:69319455-69319474 | None:intergenic | 55.0% | |
| TTTCCGGGGAGGGACAATAG+AGG | + | chr7_3:69319460-69319479 | Msa1120130:intron | 55.0% | |
| GTCGGCGCCACTGTATGTTA+TGG | - | chr7_3:69319826-69319845 | None:intergenic | 55.0% | |
| CGCCGACAGTGTACCAGTTA+TGG | + | chr7_3:69319839-69319858 | Msa1120130:CDS | 55.0% | |
| CTTCTATACGGCGGCGGTTG+TGG | - | chr7_3:69316635-69316654 | None:intergenic | 60.0% | |
| CACAACCGCCGCCGTATAGA+AGG | + | chr7_3:69316633-69316652 | Msa1120130:CDS | 60.0% | |
| ACCTGGGGAGGCTGATACGT+GGG | - | chr7_3:69317011-69317030 | None:intergenic | 60.0% | |
| AACCTGGGGAGGCTGATACG+TGG | - | chr7_3:69317012-69317031 | None:intergenic | 60.0% | |
| GAGGAAGGGGTTAGACTGCG+TGG | + | chr7_3:69317582-69317601 | Msa1120130:intron | 60.0% | |
| CCAGGTCTCCTCTCCTGACA+AGG | - | chr7_3:69317624-69317643 | None:intergenic | 60.0% | |
| CCTTGTCAGGAGAGGAGACC+TGG | + | chr7_3:69317621-69317640 | Msa1120130:intron | 60.0% | |
| GAGTTCACATGGGGAGGGAC+GGG | + | chr7_3:69319267-69319286 | Msa1120130:intron | 60.0% | |
| CGACCTCTATTGTCCCTCCC+CGG | - | chr7_3:69319466-69319485 | None:intergenic | 60.0% | |
| CGGGGAGGGACAATAGAGGT+CGG | + | chr7_3:69319464-69319483 | Msa1120130:intron | 60.0% | |
| CGTTTGCGGAGTGCACGTGC+TGG | - | chr7_3:69316452-69316471 | None:intergenic | 65.0% | |
| CTATACGGCGGCGGTTGTGG+TGG | - | chr7_3:69316632-69316651 | None:intergenic | 65.0% | |
| TCCCACGTATCAGCCTCCCC+AGG | + | chr7_3:69317007-69317026 | Msa1120130:CDS | 65.0% | |
| !! | GGGAGGGACGGGAAGCACTT+GGG | + | chr7_3:69319278-69319297 | Msa1120130:intron | 65.0% |
| TACGGCGGCGGTTGTGGTGG+TGG | - | chr7_3:69316629-69316648 | None:intergenic | 70.0% | |
| !! | GGGGAGGGACGGGAAGCACT+TGG | + | chr7_3:69319277-69319296 | Msa1120130:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69316320 | 69320556 | 69316320 | ID=Msa1120130;Name=Msa1120130 |
| chr7_3 | mRNA | 69316320 | 69320556 | 69316320 | ID=Msa1120130-mRNA-1;Parent=Msa1120130;Name=Msa1120130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=43|1|1|1|0.75|0.6|5|214|390 |
| chr7_3 | exon | 69316320 | 69317028 | 69316320 | ID=Msa1120130-mRNA-1:exon:17548;Parent=Msa1120130-mRNA-1 |
| chr7_3 | exon | 69318519 | 69318659 | 69318519 | ID=Msa1120130-mRNA-1:exon:17549;Parent=Msa1120130-mRNA-1 |
| chr7_3 | exon | 69319723 | 69319982 | 69319723 | ID=Msa1120130-mRNA-1:exon:17550;Parent=Msa1120130-mRNA-1 |
| chr7_3 | exon | 69320197 | 69320372 | 69320197 | ID=Msa1120130-mRNA-1:exon:17551;Parent=Msa1120130-mRNA-1 |
| chr7_3 | exon | 69320413 | 69320556 | 69320413 | ID=Msa1120130-mRNA-1:exon:17552;Parent=Msa1120130-mRNA-1 |
| chr7_3 | five_prime_UTR | 69316320 | 69316362 | 69316320 | ID=Msa1120130-mRNA-1:five_prime_utr;Parent=Msa1120130-mRNA-1 |
| chr7_3 | CDS | 69316363 | 69317028 | 69316363 | ID=Msa1120130-mRNA-1:cds;Parent=Msa1120130-mRNA-1 |
| chr7_3 | CDS | 69318519 | 69318659 | 69318519 | ID=Msa1120130-mRNA-1:cds;Parent=Msa1120130-mRNA-1 |
| chr7_3 | CDS | 69319723 | 69319982 | 69319723 | ID=Msa1120130-mRNA-1:cds;Parent=Msa1120130-mRNA-1 |
| chr7_3 | CDS | 69320197 | 69320302 | 69320197 | ID=Msa1120130-mRNA-1:cds;Parent=Msa1120130-mRNA-1 |
| chr7_3 | three_prime_UTR | 69320303 | 69320372 | 69320303 | ID=Msa1120130-mRNA-1:three_prime_utr;Parent=Msa1120130-mRNA-1 |
| chr7_3 | three_prime_UTR | 69320413 | 69320556 | 69320413 | ID=Msa1120130-mRNA-1:three_prime_utr;Parent=Msa1120130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
