Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758300 | sp|C0SVM5|BBX19_ARATH | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.56e-56 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758300 | A0A072UCQ4 | 89.730 | 185 | 1 | 1 | 1 | 167 | 1 | 185 | 1.09e-115 | 337 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0758300 | TF | DBB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0074140 | Msa0758300 | 0.813127 | 2.995739e-51 | -8.615850e-47 |
| Msa0074180 | Msa0758300 | 0.808798 | 2.594454e-50 | -8.615850e-47 |
| Msa0116590 | Msa0758300 | 0.806147 | 9.474662e-50 | -8.615850e-47 |
| Msa0604010 | Msa0758300 | -0.824588 | 7.443102e-54 | -8.615850e-47 |
| Msa0605630 | Msa0758300 | -0.818131 | 2.300755e-52 | -8.615850e-47 |
| Msa0609660 | Msa0758300 | 0.805930 | 1.052173e-49 | -8.615850e-47 |
| Msa0646580 | Msa0758300 | -0.810167 | 1.318682e-50 | -8.615850e-47 |
| Msa0650500 | Msa0758300 | 0.826549 | 2.552644e-54 | -8.615850e-47 |
| Msa0692240 | Msa0758300 | 0.821905 | 3.148419e-53 | -8.615850e-47 |
| Msa0758300 | Msa0792480 | 0.854219 | 1.423511e-61 | -8.615850e-47 |
| Msa0758300 | Msa0799680 | 0.803076 | 4.141859e-49 | -8.615850e-47 |
| Msa0758300 | Msa0837930 | 0.892638 | 1.320341e-74 | -8.615850e-47 |
| Msa0758300 | Msa0867730 | -0.837954 | 3.830561e-57 | -8.615850e-47 |
| Msa0758300 | Msa1120130 | -0.803019 | 4.255648e-49 | -8.615850e-47 |
| Msa0758300 | Msa1130820 | 0.868681 | 5.447878e-66 | -8.615850e-47 |
| Msa0758300 | Msa1139800 | 0.802761 | 4.811197e-49 | -8.615850e-47 |
| Msa0758300 | Msa1172610 | 0.821180 | 4.631079e-53 | -8.615850e-47 |
| Msa0758300 | Msa1212190 | -0.823195 | 1.578578e-53 | -8.615850e-47 |
| Msa0758300 | Msa1212270 | -0.831431 | 1.676361e-55 | -8.615850e-47 |
| Msa0758300 | Msa1259910 | -0.826167 | 3.146861e-54 | -8.615850e-47 |
| Msa0758300 | Msa1384360 | 0.824357 | 8.431708e-54 | -8.615850e-47 |
| Msa0758300 | Msa1406670 | 0.864810 | 9.301446e-65 | -8.615850e-47 |
| Msa0758300 | Msa1448870 | 0.864389 | 1.259341e-64 | -8.615850e-47 |
| Msa0372290 | Msa0758300 | 0.804690 | 1.914172e-49 | -8.615850e-47 |
| Msa0381500 | Msa0758300 | -0.803784 | 2.954706e-49 | -8.615850e-47 |
| Msa0387830 | Msa0758300 | -0.801611 | 8.298064e-49 | -8.615850e-47 |
| Msa0402210 | Msa0758300 | -0.824940 | 6.148105e-54 | -8.615850e-47 |
| Msa0435980 | Msa0758300 | 0.829739 | 4.349015e-55 | -8.615850e-47 |
| Msa0444170 | Msa0758300 | 0.803003 | 4.288439e-49 | -8.615850e-47 |
| Msa0350070 | Msa0758300 | 0.808288 | 3.333842e-50 | -8.615850e-47 |
| Msa0355140 | Msa0758300 | -0.817622 | 2.996726e-52 | -8.615850e-47 |
| Msa0483770 | Msa0758300 | -0.820985 | 5.135475e-53 | -8.615850e-47 |
| Msa0491730 | Msa0758300 | 0.819298 | 1.249835e-52 | -8.615850e-47 |
| Msa0497160 | Msa0758300 | 0.843221 | 1.600859e-58 | -8.615850e-47 |
| Msa0527690 | Msa0758300 | 0.825014 | 5.906027e-54 | -8.615850e-47 |
| Msa0550150 | Msa0758300 | -0.847509 | 1.105795e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758300 | MtrunA17_Chr5g0405151 | 90.217 | 184 | 0 | 1 | 1 | 166 | 1 | 184 | 1.06e-118 | 335 |
| Msa0758300 | MtrunA17_Chr2g0314671 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 1.09e-24 | 99.0 |
| Msa0758300 | MtrunA17_Chr2g0329511 | 49.462 | 93 | 46 | 1 | 1 | 92 | 1 | 93 | 1.52e-23 | 94.7 |
| Msa0758300 | MtrunA17_Chr4g0033641 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 1.40e-21 | 89.4 |
| Msa0758300 | MtrunA17_Chr3g0145061 | 44.186 | 86 | 46 | 1 | 1 | 84 | 1 | 86 | 2.40e-21 | 88.6 |
| Msa0758300 | MtrunA17_Chr3g0142221 | 47.126 | 87 | 43 | 1 | 1 | 84 | 1 | 87 | 1.62e-20 | 86.3 |
| Msa0758300 | MtrunA17_Chr4g0035651 | 44.186 | 86 | 46 | 1 | 1 | 84 | 1 | 86 | 3.57e-20 | 85.5 |
| Msa0758300 | MtrunA17_Chr3g0136701 | 51.852 | 81 | 31 | 1 | 4 | 84 | 5 | 77 | 3.98e-20 | 86.7 |
| Msa0758300 | MtrunA17_Chr1g0155811 | 47.674 | 86 | 43 | 1 | 1 | 84 | 1 | 86 | 3.24e-19 | 83.6 |
| Msa0758300 | MtrunA17_Chr1g0150471 | 46.914 | 81 | 35 | 1 | 4 | 84 | 5 | 77 | 3.78e-18 | 81.3 |
| Msa0758300 | MtrunA17_Chr7g0220721 | 48.750 | 80 | 33 | 1 | 5 | 84 | 26 | 97 | 1.33e-17 | 80.5 |
| Msa0758300 | MtrunA17_Chr4g0072871 | 43.210 | 81 | 38 | 1 | 4 | 84 | 21 | 93 | 8.35e-16 | 75.5 |
| Msa0758300 | MtrunA17_Chr7g0268691 | 38.750 | 80 | 41 | 1 | 5 | 84 | 20 | 91 | 6.27e-13 | 67.0 |
| Msa0758300 | MtrunA17_Chr5g0429341 | 36.559 | 93 | 49 | 2 | 1 | 93 | 1 | 83 | 8.74e-12 | 63.9 |
| Msa0758300 | MtrunA17_Chr3g0120711 | 38.095 | 84 | 44 | 1 | 1 | 84 | 1 | 76 | 2.12e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0758300 | AT4G38960.1 | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.59e-57 | 181 |
| Msa0758300 | AT4G38960.6 | 57.831 | 166 | 58 | 4 | 1 | 165 | 1 | 155 | 1.59e-57 | 181 |
| Msa0758300 | AT2G21320.1 | 52.717 | 184 | 42 | 4 | 1 | 166 | 1 | 157 | 5.13e-54 | 171 |
| Msa0758300 | AT4G38960.3 | 45.933 | 209 | 58 | 5 | 1 | 165 | 1 | 198 | 1.38e-49 | 162 |
| Msa0758300 | AT4G38960.4 | 47.857 | 140 | 61 | 4 | 34 | 172 | 1 | 129 | 4.64e-36 | 125 |
| Msa0758300 | AT4G38960.5 | 50.376 | 133 | 54 | 4 | 34 | 165 | 1 | 122 | 2.88e-34 | 120 |
| Msa0758300 | AT4G38960.2 | 50.376 | 133 | 54 | 4 | 34 | 165 | 1 | 122 | 2.88e-34 | 120 |
| Msa0758300 | AT1G78600.1 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 5.11e-26 | 102 |
| Msa0758300 | AT1G78600.2 | 55.294 | 85 | 37 | 1 | 1 | 84 | 1 | 85 | 7.27e-26 | 102 |
| Msa0758300 | AT1G06040.2 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 1.32e-21 | 88.2 |
| Msa0758300 | AT4G39070.1 | 47.674 | 86 | 43 | 1 | 1 | 84 | 1 | 86 | 3.50e-21 | 89.0 |
| Msa0758300 | AT1G75540.1 | 46.591 | 88 | 43 | 1 | 1 | 84 | 1 | 88 | 4.63e-21 | 90.1 |
| Msa0758300 | AT1G06040.1 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 5.44e-21 | 88.6 |
| Msa0758300 | AT2G24790.1 | 50.617 | 81 | 32 | 1 | 4 | 84 | 7 | 79 | 4.03e-20 | 87.0 |
| Msa0758300 | AT2G24790.2 | 50.617 | 81 | 32 | 1 | 4 | 84 | 7 | 79 | 5.56e-20 | 85.1 |
| Msa0758300 | AT2G31380.1 | 48.387 | 93 | 47 | 1 | 1 | 92 | 1 | 93 | 9.86e-20 | 84.7 |
| Msa0758300 | AT5G24930.1 | 48.148 | 81 | 34 | 1 | 4 | 84 | 5 | 77 | 5.59e-19 | 84.7 |
| Msa0758300 | AT5G15850.1 | 50.000 | 80 | 32 | 1 | 5 | 84 | 12 | 83 | 6.76e-19 | 84.3 |
| Msa0758300 | AT3G02380.1 | 48.750 | 80 | 33 | 1 | 5 | 84 | 16 | 87 | 5.20e-18 | 81.6 |
| Msa0758300 | AT5G15840.1 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 1.46e-17 | 80.9 |
| Msa0758300 | AT5G15840.2 | 50.000 | 80 | 32 | 1 | 5 | 84 | 20 | 91 | 2.03e-17 | 79.3 |
| Msa0758300 | AT4G10240.1 | 43.956 | 91 | 44 | 1 | 1 | 84 | 1 | 91 | 4.02e-17 | 76.3 |
| Msa0758300 | AT2G47890.1 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 6.71e-16 | 75.9 |
| Msa0758300 | AT2G47890.3 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 7.36e-16 | 75.1 |
| Msa0758300 | AT2G47890.2 | 44.444 | 81 | 37 | 1 | 4 | 84 | 12 | 84 | 1.78e-15 | 73.2 |
| Msa0758300 | AT5G57660.1 | 42.500 | 80 | 34 | 2 | 5 | 84 | 22 | 89 | 3.48e-13 | 68.2 |
| Msa0758300 | AT1G28050.1 | 42.169 | 83 | 40 | 1 | 2 | 84 | 6 | 80 | 9.07e-13 | 67.0 |
| Msa0758300 | AT2G33500.1 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 3.39e-11 | 62.4 |
| Msa0758300 | AT2G33500.2 | 40.000 | 80 | 40 | 1 | 5 | 84 | 12 | 83 | 3.45e-11 | 62.4 |
| Msa0758300 | AT1G68190.1 | 37.931 | 87 | 46 | 1 | 1 | 87 | 10 | 88 | 8.50e-11 | 61.2 |
| Msa0758300 | AT1G68190.3 | 37.931 | 87 | 46 | 1 | 1 | 87 | 10 | 88 | 8.50e-11 | 61.2 |
| Msa0758300 | AT1G68190.2 | 37.931 | 87 | 46 | 1 | 1 | 87 | 39 | 117 | 9.61e-11 | 61.2 |
Find 63 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATGATGGAAAGTTAT+AGG | 0.287871 | 5_2:+13494883 | None:intergenic |
| TGTTCATGTATTCTGTTGTT+AGG | 0.314824 | 5_2:+13493194 | None:intergenic |
| CTCTTTGTTTCATAGTTTCC+AGG | 0.319859 | 5_2:-13493416 | Msa0758300:intron |
| TTCTGCCATCAATTGTAGTT+TGG | 0.326157 | 5_2:+13492052 | None:intergenic |
| AGTTAGCTAGTAGACATGTT+AGG | 0.334611 | 5_2:-13494011 | Msa0758300:CDS |
| TTGCTTTGTAGCACGATCTA+TGG | 0.342553 | 5_2:+13492304 | None:intergenic |
| TTTAGCCAAACTACAATTGA+TGG | 0.356401 | 5_2:-13492057 | Msa0758300:three_prime_UTR |
| TTAGAATTCCCATCAGCATT+AGG | 0.367971 | 5_2:+13493251 | None:intergenic |
| TTTGAGAAGTGAGAAAGCTT+TGG | 0.415379 | 5_2:+13494968 | None:intergenic |
| TGAACATGCATCAAATAATC+AGG | 0.417562 | 5_2:-13493177 | Msa0758300:intron |
| AGTGAAATTGATAAACGTAT+TGG | 0.423281 | 5_2:-13493053 | Msa0758300:CDS |
| CAACACACTATTCATTGAAA+GGG | 0.434646 | 5_2:+13492180 | None:intergenic |
| CTTACAAACCCACATGGATT+CGG | 0.449289 | 5_2:-13494795 | Msa0758300:intron |
| GCCGGGTTGTCTGCATTACT+AGG | 0.455216 | 5_2:+13493386 | None:intergenic |
| AAGATGGAGGTTGTTGATGA+TGG | 0.460545 | 5_2:+13494872 | None:intergenic |
| GAGAGAAGCAACAAAATCAT+AGG | 0.461871 | 5_2:-13493298 | Msa0758300:CDS |
| GGATCTAGAGGTTGTGAAGC+CGG | 0.462473 | 5_2:+13493368 | None:intergenic |
| AACGTATTGGCTGTTGCTAC+TGG | 0.479764 | 5_2:-13493040 | Msa0758300:intron |
| TCAGCATTAGGTTCTGAAGT+TGG | 0.480629 | 5_2:+13493263 | None:intergenic |
| CAGCCATAGGTTGTGCTACA+AGG | 0.481804 | 5_2:-13492364 | Msa0758300:CDS |
| GTGATGAAGTTTGATGAAGA+TGG | 0.483306 | 5_2:+13494856 | None:intergenic |
| TCAACACACTATTCATTGAA+AGG | 0.483387 | 5_2:+13492179 | None:intergenic |
| CAAGGCAGTCTGATTCCAAC+AGG | 0.483954 | 5_2:-13492346 | Msa0758300:CDS |
| TCGCACCGCGGCACGTCACT+CGG | 0.487301 | 5_2:+13493973 | None:intergenic |
| CATATCACATTGCAAACAAA+GGG | 0.494623 | 5_2:+13493811 | None:intergenic |
| CTGCCTTGTAGCACAACCTA+TGG | 0.498589 | 5_2:+13492361 | None:intergenic |
| ACCCTTCAACCCAAACCAAA+AGG | 0.499384 | 5_2:-13494928 | Msa0758300:five_prime_UTR |
| GTTAGCTAGTAGACATGTTA+GGG | 0.499857 | 5_2:-13494010 | Msa0758300:CDS |
| TTAGGTTCTGAAGTTGGAAC+CGG | 0.500416 | 5_2:+13493269 | None:intergenic |
| GCATTACTAGGTTTATCGCC+TGG | 0.511209 | 5_2:+13493398 | None:intergenic |
| TAGAATTTGTTCTCTCATGT+AGG | 0.518227 | 5_2:-13492271 | Msa0758300:CDS |
| TGCTGATGGGAATTCTAAGA+TGG | 0.518367 | 5_2:-13493246 | Msa0758300:CDS |
| AGTATTATCCTCTATGTCAT+GGG | 0.522240 | 5_2:+13492113 | None:intergenic |
| AAGTATTATCCTCTATGTCA+TGG | 0.531186 | 5_2:+13492112 | None:intergenic |
| GATCCAGGTGATATTAAAAG+AGG | 0.532561 | 5_2:-13493350 | Msa0758300:CDS |
| GATCTAGAGGTTGTGAAGCC+GGG | 0.534120 | 5_2:+13493369 | None:intergenic |
| TCATATCACATTGCAAACAA+AGG | 0.534969 | 5_2:+13493810 | None:intergenic |
| TTAATATCACCTGGATCTAG+AGG | 0.539036 | 5_2:+13493356 | None:intergenic |
| GCTTCACAACCTCTAGATCC+AGG | 0.543997 | 5_2:-13493365 | Msa0758300:CDS |
| TTCTTCTATTGCGAAACAGA+TGG | 0.548785 | 5_2:-13493839 | Msa0758300:CDS |
| ACTTCAGAACCTAATGCTGA+TGG | 0.548946 | 5_2:-13493260 | Msa0758300:CDS |
| GCTAGTAGACATGTTAGGGT+TGG | 0.553453 | 5_2:-13494006 | Msa0758300:CDS |
| ACCTAGTAATGCAGACAACC+CGG | 0.558690 | 5_2:-13493387 | Msa0758300:CDS |
| AACTTTCTTACAAACCCACA+TGG | 0.572929 | 5_2:-13494801 | Msa0758300:five_prime_UTR |
| AACACACTATTCATTGAAAG+GGG | 0.575642 | 5_2:+13492181 | None:intergenic |
| ACAAAATCATAGGATGCCTC+CGG | 0.578363 | 5_2:-13493288 | Msa0758300:CDS |
| CACAAACAACGACAGAAACA+AGG | 0.582378 | 5_2:+13492014 | None:intergenic |
| CAAGTCCGAGTGACGTGCCG+CGG | 0.583612 | 5_2:-13493978 | Msa0758300:CDS |
| CTTCAGAACCTAATGCTGAT+GGG | 0.588602 | 5_2:-13493259 | Msa0758300:CDS |
| CTGTCGTGCTTGTGATGAGA+AGG | 0.598560 | 5_2:-13494530 | Msa0758300:intron |
| TTTCTGATGTAAGATCCTGT+TGG | 0.611981 | 5_2:+13492331 | None:intergenic |
| GGTTCTGAAGTTGGAACCGG+AGG | 0.621508 | 5_2:+13493272 | None:intergenic |
| ATGAAGTTTGATGAAGATGG+AGG | 0.626151 | 5_2:+13494859 | None:intergenic |
| GTATTATCCTCTATGTCATG+GGG | 0.628959 | 5_2:+13492114 | None:intergenic |
| CAACGACAGAAACAAGGCAG+CGG | 0.644302 | 5_2:+13492020 | None:intergenic |
| GACATATGTGAGAATGCCCC+TGG | 0.645262 | 5_2:-13493952 | Msa0758300:intron |
| AGATATTCACCGAATCCATG+TGG | 0.651589 | 5_2:+13494786 | None:intergenic |
| GATATTCACCGAATCCATGT+GGG | 0.655668 | 5_2:+13494787 | None:intergenic |
| CAATTGATGGCAGAAATCAA+AGG | 0.686059 | 5_2:-13492044 | Msa0758300:three_prime_UTR |
| ACACACTATTCATTGAAAGG+GGG | 0.688107 | 5_2:+13492182 | None:intergenic |
| AGCAGCACAGAAAACTATAG+CGG | 0.689026 | 5_2:+13494567 | None:intergenic |
| TATTATCCTCTATGTCATGG+GGG | 0.730917 | 5_2:+13492115 | None:intergenic |
| TTCTCACATATGTCGCACCG+CGG | 0.743597 | 5_2:+13493961 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAAAAAAAACTATGTT+GGG | + | chr5_2:13492249-13492268 | None:intergenic | 15.0% |
| !! | TTTATCAAAAAAAACTATGT+TGG | + | chr5_2:13492250-13492269 | None:intergenic | 15.0% |
| !!! | TATTTTAAAGTAGATAATTC+AGG | - | chr5_2:13492352-13492371 | Msa0758300:CDS | 15.0% |
| !!! | ATTTGATTTGATATTTTTTG+TGG | - | chr5_2:13492812-13492831 | Msa0758300:intron | 15.0% |
| !!! | TAATAATTTTGATACATTGA+GGG | + | chr5_2:13493442-13493461 | None:intergenic | 15.0% |
| !!! | ATAATAATTTTGATACATTG+AGG | + | chr5_2:13493443-13493462 | None:intergenic | 15.0% |
| !!! | TTTTACATAGAAACTTTTTA+AGG | + | chr5_2:13494480-13494499 | None:intergenic | 15.0% |
| !! | GGAAAAATAACAAAATAATA+AGG | + | chr5_2:13494530-13494549 | None:intergenic | 15.0% |
| !!! | GACCATCAATTTTTTATAAT+TGG | - | chr5_2:13492636-13492655 | Msa0758300:intron | 20.0% |
| !! | GTCCAATTATAAAAAATTGA+TGG | + | chr5_2:13492641-13492660 | None:intergenic | 20.0% |
| !! | AAACATTACACTTACAAAAA+AGG | + | chr5_2:13492663-13492682 | None:intergenic | 20.0% |
| !! | TTGTGTAAATTCAAAATCTA+AGG | - | chr5_2:13492837-13492856 | Msa0758300:intron | 20.0% |
| !! | GATTATACTTAAAACTAACT+TGG | + | chr5_2:13492950-13492969 | None:intergenic | 20.0% |
| !!! | AGTTAGTTTTAAGTATAATC+TGG | - | chr5_2:13492950-13492969 | Msa0758300:intron | 20.0% |
| !!! | TTTTAAGTATAATCTGGTAT+TGG | - | chr5_2:13492956-13492975 | Msa0758300:intron | 20.0% |
| !!! | AATTCAAGACTAATTCATTT+TGG | + | chr5_2:13493372-13493391 | None:intergenic | 20.0% |
| !!! | AAATATATCTTGAACTTTTG+CGG | - | chr5_2:13494497-13494516 | Msa0758300:intron | 20.0% |
| !!! | TAATGTTGTTTTGTTTATCT+TGG | - | chr5_2:13494690-13494709 | Msa0758300:intron | 20.0% |
| ! | TTAACCTAATCCAACATAAA+TGG | + | chr5_2:13492739-13492758 | None:intergenic | 25.0% |
| ! | TTATGAAACTAAATTGCAAG+TGG | + | chr5_2:13492775-13492794 | None:intergenic | 25.0% |
| !!! | AATGACGATTTTAGCTTATA+AGG | + | chr5_2:13492888-13492907 | None:intergenic | 25.0% |
| ! | TTCTTTAAACAAAATCGAGA+AGG | + | chr5_2:13492925-13492944 | None:intergenic | 25.0% |
| !! | GACTAATTCATTTTGGATAA+AGG | + | chr5_2:13493365-13493384 | None:intergenic | 25.0% |
| !!! | TATCTTTTGTTAGTCACTTT+CGG | - | chr5_2:13493512-13493531 | Msa0758300:intron | 25.0% |
| !!! | TTTGAAATTTTGATACGTTC+AGG | - | chr5_2:13493542-13493561 | Msa0758300:intron | 25.0% |
| !!! | TTGAAATTTTGATACGTTCA+GGG | - | chr5_2:13493543-13493562 | Msa0758300:intron | 25.0% |
| ! | GGTATTATACATACATTTGA+AGG | + | chr5_2:13493642-13493661 | None:intergenic | 25.0% |
| ! | AGTGAAATTGATAAACGTAT+TGG | - | chr5_2:13494024-13494043 | Msa0758300:CDS | 25.0% |
| ! | CGCTAAATATGAATAATTTC+TGG | - | chr5_2:13494073-13494092 | Msa0758300:intron | 25.0% |
| ! | ATAGCTAATGTAGTTATGAT+TGG | - | chr5_2:13494148-13494167 | Msa0758300:intron | 25.0% |
| ! | TAGCTAATGTAGTTATGATT+GGG | - | chr5_2:13494149-13494168 | Msa0758300:intron | 25.0% |
| !!! | AGTGTGTTGAAATTTGTTTT+TGG | - | chr5_2:13494911-13494930 | Msa0758300:five_prime_UTR | 25.0% |
| !! | ATAGGATTTTGAAGGAGTTT+GGG | + | chr5_2:13492179-13492198 | None:intergenic | 30.0% |
| !! | TATAGGATTTTGAAGGAGTT+TGG | + | chr5_2:13492180-13492199 | None:intergenic | 30.0% |
| ! | GGAAAGTTATAGGATTTTGA+AGG | + | chr5_2:13492187-13492206 | None:intergenic | 30.0% |
| !! | TGTTGATGATGGAAAGTTAT+AGG | + | chr5_2:13492197-13492216 | None:intergenic | 30.0% |
| TTGAATGAGTCCATTTATGT+TGG | - | chr5_2:13492726-13492745 | Msa0758300:intron | 30.0% | |
| ! | TGTTGGATTAGGTTAAAGAT+TGG | - | chr5_2:13492743-13492762 | Msa0758300:intron | 30.0% |
| GATTAGGTTAAAGATTGGAT+TGG | - | chr5_2:13492748-13492767 | Msa0758300:intron | 30.0% | |
| CTTATAAGGTCAAACTCTTA+CGG | + | chr5_2:13492874-13492893 | None:intergenic | 30.0% | |
| !! | TGGAATTTGATTGATTTTCC+TGG | - | chr5_2:13492976-13492995 | Msa0758300:intron | 30.0% |
| AAAGAAGAAACTTCTTACCA+GGG | + | chr5_2:13493145-13493164 | None:intergenic | 30.0% | |
| AAAAGAAGAAACTTCTTACC+AGG | + | chr5_2:13493146-13493165 | None:intergenic | 30.0% | |
| CATATCACATTGCAAACAAA+GGG | + | chr5_2:13493269-13493288 | None:intergenic | 30.0% | |
| TCATATCACATTGCAAACAA+AGG | + | chr5_2:13493270-13493289 | None:intergenic | 30.0% | |
| TGTGATATGATAGTTCATGT+TGG | - | chr5_2:13493280-13493299 | Msa0758300:CDS | 30.0% | |
| ATGGAAGATATCTTCTCTTT+AGG | - | chr5_2:13493317-13493336 | Msa0758300:CDS | 30.0% | |
| ! | TTTTAATCCTTGAATGTGTG+AGG | - | chr5_2:13493403-13493422 | Msa0758300:CDS | 30.0% |
| GACTAATAAAAGACACATTC+AGG | + | chr5_2:13493475-13493494 | None:intergenic | 30.0% | |
| ! | GTGTCTTTTATTAGTCAGTT+AGG | - | chr5_2:13493479-13493498 | Msa0758300:intron | 30.0% |
| ACTAACAAAAGATACATCTG+AGG | + | chr5_2:13493506-13493525 | None:intergenic | 30.0% | |
| !! | ATCTTTTGTTAGTCACTTTC+GGG | - | chr5_2:13493513-13493532 | Msa0758300:intron | 30.0% |
| TCCACTTCCTAAACAAAAAA+TGG | - | chr5_2:13493756-13493775 | Msa0758300:intron | 30.0% | |
| CCACTTCCTAAACAAAAAAT+GGG | - | chr5_2:13493757-13493776 | Msa0758300:intron | 30.0% | |
| !!! | TTCTCTCCCATTTTTTGTTT+AGG | + | chr5_2:13493766-13493785 | None:intergenic | 30.0% |
| TGTTCATGTATTCTGTTGTT+AGG | + | chr5_2:13493886-13493905 | None:intergenic | 30.0% | |
| TGAACATGCATCAAATAATC+AGG | - | chr5_2:13493900-13493919 | Msa0758300:intron | 30.0% | |
| AATAATCAGGTTAGAGTTCA+TGG | - | chr5_2:13493913-13493932 | Msa0758300:intron | 30.0% | |
| ATAATCAGGTTAGAGTTCAT+GGG | - | chr5_2:13493914-13493933 | Msa0758300:intron | 30.0% | |
| TGTAGTTATGATTGGGATAT+AGG | - | chr5_2:13494156-13494175 | Msa0758300:intron | 30.0% | |
| !! | TGATGTCTTTTAAGTAAAGC+TGG | + | chr5_2:13494356-13494375 | None:intergenic | 30.0% |
| CTACAGAAATTAACATTGCA+AGG | - | chr5_2:13494415-13494434 | Msa0758300:intron | 30.0% | |
| TATCCATGTGTTTATGATTG+TGG | - | chr5_2:13494442-13494461 | Msa0758300:intron | 30.0% | |
| AAACCACAATCATAAACACA+TGG | + | chr5_2:13494448-13494467 | None:intergenic | 30.0% | |
| ! | AAGATGAATGATTTGTCGTT+CGG | + | chr5_2:13494551-13494570 | None:intergenic | 30.0% |
| ! | TAGAATTTGTTCTCTCATGT+AGG | - | chr5_2:13494806-13494825 | Msa0758300:five_prime_UTR | 30.0% |
| AACACACTATTCATTGAAAG+GGG | + | chr5_2:13494899-13494918 | None:intergenic | 30.0% | |
| CAACACACTATTCATTGAAA+GGG | + | chr5_2:13494900-13494919 | None:intergenic | 30.0% | |
| TCAACACACTATTCATTGAA+AGG | + | chr5_2:13494901-13494920 | None:intergenic | 30.0% | |
| AGTATTATCCTCTATGTCAT+GGG | + | chr5_2:13494967-13494986 | None:intergenic | 30.0% | |
| AAGTATTATCCTCTATGTCA+TGG | + | chr5_2:13494968-13494987 | None:intergenic | 30.0% | |
| TTTAGCCAAACTACAATTGA+TGG | - | chr5_2:13495020-13495039 | Msa0758300:five_prime_UTR | 30.0% | |
| TTTGAGAAGTGAGAAAGCTT+TGG | + | chr5_2:13492112-13492131 | None:intergenic | 35.0% | |
| !! | TAGGATTTTGAAGGAGTTTG+GGG | + | chr5_2:13492178-13492197 | None:intergenic | 35.0% |
| ATGAAGTTTGATGAAGATGG+AGG | + | chr5_2:13492221-13492240 | None:intergenic | 35.0% | |
| GTGATGAAGTTTGATGAAGA+TGG | + | chr5_2:13492224-13492243 | None:intergenic | 35.0% | |
| AACTTTCTTACAAACCCACA+TGG | - | chr5_2:13492276-13492295 | Msa0758300:CDS | 35.0% | |
| GAGTCCATTTATGTTGGATT+AGG | - | chr5_2:13492732-13492751 | Msa0758300:intron | 35.0% | |
| TTAGTTGAAAGACATTGACC+AGG | + | chr5_2:13492997-13493016 | None:intergenic | 35.0% | |
| GGTCAATGTCTTTCAACTAA+TGG | - | chr5_2:13492997-13493016 | Msa0758300:intron | 35.0% | |
| ! | GGTTCAAAGTTTGCAACTTT+TGG | - | chr5_2:13493018-13493037 | Msa0758300:intron | 35.0% |
| !! | TTGCAACTTTTGGAAATTGC+AGG | - | chr5_2:13493028-13493047 | Msa0758300:intron | 35.0% |
| AGTTAGCTAGTAGACATGTT+AGG | - | chr5_2:13493066-13493085 | Msa0758300:CDS | 35.0% | |
| GTTAGCTAGTAGACATGTTA+GGG | - | chr5_2:13493067-13493086 | Msa0758300:CDS | 35.0% | |
| AAGAAGAAACTTCTTACCAG+GGG | + | chr5_2:13493144-13493163 | None:intergenic | 35.0% | |
| ATCAGAAGAACAACACTACA+AGG | + | chr5_2:13493172-13493191 | None:intergenic | 35.0% | |
| TTCTTCTATTGCGAAACAGA+TGG | - | chr5_2:13493238-13493257 | Msa0758300:CDS | 35.0% | |
| GATATGATAGTTCATGTTGG+TGG | - | chr5_2:13493283-13493302 | Msa0758300:CDS | 35.0% | |
| !! | TCTTTTGTTAGTCACTTTCG+GGG | - | chr5_2:13493514-13493533 | Msa0758300:intron | 35.0% |
| TGACATCGTTTCACACATTT+AGG | - | chr5_2:13493573-13493592 | Msa0758300:intron | 35.0% | |
| GACATCGTTTCACACATTTA+GGG | - | chr5_2:13493574-13493593 | Msa0758300:intron | 35.0% | |
| CTGGAAACTATGAAACAAAG+AGG | + | chr5_2:13493663-13493682 | None:intergenic | 35.0% | |
| ! | CTCTTTGTTTCATAGTTTCC+AGG | - | chr5_2:13493661-13493680 | Msa0758300:intron | 35.0% |
| TTAATATCACCTGGATCTAG+AGG | + | chr5_2:13493724-13493743 | None:intergenic | 35.0% | |
| GATCCAGGTGATATTAAAAG+AGG | - | chr5_2:13493727-13493746 | Msa0758300:intron | 35.0% | |
| ! | TGTCCTCTTTTAATATCACC+TGG | + | chr5_2:13493733-13493752 | None:intergenic | 35.0% |
| !!! | CCCATTTTTTGTTTAGGAAG+TGG | + | chr5_2:13493760-13493779 | None:intergenic | 35.0% |
| GAGAGAAGCAACAAAATCAT+AGG | - | chr5_2:13493779-13493798 | Msa0758300:intron | 35.0% | |
| TTAGAATTCCCATCAGCATT+AGG | + | chr5_2:13493829-13493848 | None:intergenic | 35.0% | |
| !!! | CATTGGACTAGCTCAAATTT+TGG | + | chr5_2:13494266-13494285 | None:intergenic | 35.0% |
| ! | ATGAGATGAAATAGTGGAAC+TGG | + | chr5_2:13494316-13494335 | None:intergenic | 35.0% |
| CACAAGATGAGATGAAATAG+TGG | + | chr5_2:13494322-13494341 | None:intergenic | 35.0% | |
| ! | TATCTTGAACTTTTGCGGAT+TGG | - | chr5_2:13494502-13494521 | Msa0758300:intron | 35.0% |
| GTTCTACTTTATCCTGTCAT+TGG | + | chr5_2:13494594-13494613 | None:intergenic | 35.0% | |
| AAATCAAACACGCGCTTAAA+AGG | + | chr5_2:13494616-13494635 | None:intergenic | 35.0% | |
| TTTCTGATGTAAGATCCTGT+TGG | + | chr5_2:13494749-13494768 | None:intergenic | 35.0% | |
| ACACACTATTCATTGAAAGG+GGG | + | chr5_2:13494898-13494917 | None:intergenic | 35.0% | |
| TATTATCCTCTATGTCATGG+GGG | + | chr5_2:13494965-13494984 | None:intergenic | 35.0% | |
| GTATTATCCTCTATGTCATG+GGG | + | chr5_2:13494966-13494985 | None:intergenic | 35.0% | |
| TTCTGCCATCAATTGTAGTT+TGG | + | chr5_2:13495028-13495047 | None:intergenic | 35.0% | |
| ! | CAATTGATGGCAGAAATCAA+AGG | - | chr5_2:13495033-13495052 | Msa0758300:five_prime_UTR | 35.0% |
| !!! | ACCTTTTGGTTTGGGTTGAA+GGG | + | chr5_2:13492153-13492172 | None:intergenic | 40.0% |
| !! | AGGATTTTGAAGGAGTTTGG+GGG | + | chr5_2:13492177-13492196 | None:intergenic | 40.0% |
| ! | AAGATGGAGGTTGTTGATGA+TGG | + | chr5_2:13492208-13492227 | None:intergenic | 40.0% |
| CTTACAAACCCACATGGATT+CGG | - | chr5_2:13492282-13492301 | Msa0758300:CDS | 40.0% | |
| GATATTCACCGAATCCATGT+GGG | + | chr5_2:13492293-13492312 | None:intergenic | 40.0% | |
| AGATATTCACCGAATCCATG+TGG | + | chr5_2:13492294-13492313 | None:intergenic | 40.0% | |
| AGCAGCACAGAAAACTATAG+CGG | + | chr5_2:13492513-13492532 | None:intergenic | 40.0% | |
| TCTCTTTAGGCAAAGAGTTG+AGG | - | chr5_2:13493330-13493349 | Msa0758300:CDS | 40.0% | |
| ACAAAATCATAGGATGCCTC+CGG | - | chr5_2:13493789-13493808 | Msa0758300:intron | 40.0% | |
| !! | TTAGGTTCTGAAGTTGGAAC+CGG | + | chr5_2:13493811-13493830 | None:intergenic | 40.0% |
| !! | TCAGCATTAGGTTCTGAAGT+TGG | + | chr5_2:13493817-13493836 | None:intergenic | 40.0% |
| ACTTCAGAACCTAATGCTGA+TGG | - | chr5_2:13493817-13493836 | Msa0758300:CDS | 40.0% | |
| CTTCAGAACCTAATGCTGAT+GGG | - | chr5_2:13493818-13493837 | Msa0758300:CDS | 40.0% | |
| ! | TGCTGATGGGAATTCTAAGA+TGG | - | chr5_2:13493831-13493850 | Msa0758300:CDS | 40.0% |
| GGAAGTAAACTTTGTTCTGC+TGG | - | chr5_2:13493935-13493954 | Msa0758300:intron | 40.0% | |
| GTGGATGATTGCTCATTCAT+TGG | + | chr5_2:13494283-13494302 | None:intergenic | 40.0% | |
| TGTAGAATGCATCAGTAGAG+AGG | + | chr5_2:13494400-13494419 | None:intergenic | 40.0% | |
| CAATGCAATCATCCAATGAC+AGG | - | chr5_2:13494579-13494598 | Msa0758300:CDS | 40.0% | |
| TATGTCAATCACACGTGCTT+TGG | + | chr5_2:13494652-13494671 | None:intergenic | 40.0% | |
| TTGTTTATCTTGGCAGCCAT+AGG | - | chr5_2:13494700-13494719 | Msa0758300:intron | 40.0% | |
| TTGCTTTGTAGCACGATCTA+TGG | + | chr5_2:13494776-13494795 | None:intergenic | 40.0% | |
| CACAAACAACGACAGAAACA+AGG | + | chr5_2:13495066-13495085 | None:intergenic | 40.0% | |
| ACCCTTCAACCCAAACCAAA+AGG | - | chr5_2:13492149-13492168 | Msa0758300:three_prime_UTR | 45.0% | |
| !!! | GACCTTTTGGTTTGGGTTGA+AGG | + | chr5_2:13492154-13492173 | None:intergenic | 45.0% |
| !! | GGATTTTGAAGGAGTTTGGG+GGG | + | chr5_2:13492176-13492195 | None:intergenic | 45.0% |
| !! | AGTTTTCTGTGCTGCTGATG+AGG | - | chr5_2:13492517-13492536 | Msa0758300:intron | 45.0% |
| GCTAGTAGACATGTTAGGGT+TGG | - | chr5_2:13493071-13493090 | Msa0758300:CDS | 45.0% | |
| !! | GTTGGTGGTAAAAGAACGCA+TGG | - | chr5_2:13493298-13493317 | Msa0758300:CDS | 45.0% |
| GCATTACTAGGTTTATCGCC+TGG | + | chr5_2:13493682-13493701 | None:intergenic | 45.0% | |
| ACCTAGTAATGCAGACAACC+CGG | - | chr5_2:13493690-13493709 | Msa0758300:intron | 45.0% | |
| !! | AACGTATTGGCTGTTGCTAC+TGG | - | chr5_2:13494037-13494056 | Msa0758300:intron | 45.0% |
| TGAGCAATCATCCACCTTGA+TGG | - | chr5_2:13494288-13494307 | Msa0758300:intron | 45.0% | |
| TAGTGGAACTGGATCCATCA+AGG | + | chr5_2:13494305-13494324 | None:intergenic | 45.0% | |
| !! | ACGTGCTTTGGAACGTGTAA+TGG | + | chr5_2:13494640-13494659 | None:intergenic | 45.0% |
| ATTCATTGAAAGGGGGTCAG+AGG | + | chr5_2:13494891-13494910 | None:intergenic | 45.0% | |
| !!! | TTGGGGGGACCTTTTGGTTT+GGG | + | chr5_2:13492161-13492180 | None:intergenic | 50.0% |
| !! | TTTGGGGGGACCTTTTGGTT+TGG | + | chr5_2:13492162-13492181 | None:intergenic | 50.0% |
| CTGTCGTGCTTGTGATGAGA+AGG | - | chr5_2:13492547-13492566 | Msa0758300:intron | 50.0% | |
| TTCTCACATATGTCGCACCG+CGG | + | chr5_2:13493119-13493138 | None:intergenic | 50.0% | |
| GACATATGTGAGAATGCCCC+TGG | - | chr5_2:13493125-13493144 | Msa0758300:intron | 50.0% | |
| GTGACTGCCTCACACATTCA+AGG | + | chr5_2:13493413-13493432 | None:intergenic | 50.0% | |
| GATCTAGAGGTTGTGAAGCC+GGG | + | chr5_2:13493711-13493730 | None:intergenic | 50.0% | |
| GGATCTAGAGGTTGTGAAGC+CGG | + | chr5_2:13493712-13493731 | None:intergenic | 50.0% | |
| GCTTCACAACCTCTAGATCC+AGG | - | chr5_2:13493712-13493731 | Msa0758300:intron | 50.0% | |
| TGGAACTGGATCCATCAAGG+TGG | + | chr5_2:13494302-13494321 | None:intergenic | 50.0% | |
| CAGCCATAGGTTGTGCTACA+AGG | - | chr5_2:13494713-13494732 | Msa0758300:intron | 50.0% | |
| CTGCCTTGTAGCACAACCTA+TGG | + | chr5_2:13494719-13494738 | None:intergenic | 50.0% | |
| CAAGGCAGTCTGATTCCAAC+AGG | - | chr5_2:13494731-13494750 | Msa0758300:intron | 50.0% | |
| CAACGACAGAAACAAGGCAG+CGG | + | chr5_2:13495060-13495079 | None:intergenic | 50.0% | |
| ! | AGGAGTTTGGGGGGACCTTT+TGG | + | chr5_2:13492167-13492186 | None:intergenic | 55.0% |
| GCCGGGTTGTCTGCATTACT+AGG | + | chr5_2:13493694-13493713 | None:intergenic | 55.0% | |
| !! | GGTTCTGAAGTTGGAACCGG+AGG | + | chr5_2:13493808-13493827 | None:intergenic | 55.0% |
| TGTGCTCCCCCATGACATAG+AGG | - | chr5_2:13494956-13494975 | Msa0758300:five_prime_UTR | 55.0% | |
| CAAGTCCGAGTGACGTGCCG+CGG | - | chr5_2:13493099-13493118 | Msa0758300:intron | 65.0% | |
| TCGCACCGCGGCACGTCACT+CGG | + | chr5_2:13493107-13493126 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 13492006 | 13495093 | 13492006 | ID=Msa0758300;Name=Msa0758300 |
| chr5_2 | mRNA | 13492006 | 13495093 | 13492006 | ID=Msa0758300-mRNA-1;Parent=Msa0758300;Name=Msa0758300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=322|0.5|0.71|0.85|0.66|0.42|7|250|226 |
| chr5_2 | exon | 13492006 | 13492383 | 13492006 | ID=Msa0758300-mRNA-1:exon:6081;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13493041 | 13493095 | 13493041 | ID=Msa0758300-mRNA-1:exon:6080;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13493178 | 13493423 | 13493178 | ID=Msa0758300-mRNA-1:exon:6079;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13493802 | 13493863 | 13493802 | ID=Msa0758300-mRNA-1:exon:6078;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13493953 | 13494049 | 13493953 | ID=Msa0758300-mRNA-1:exon:6077;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13494531 | 13494647 | 13494531 | ID=Msa0758300-mRNA-1:exon:6076;Parent=Msa0758300-mRNA-1 |
| chr5_2 | exon | 13494796 | 13495093 | 13494796 | ID=Msa0758300-mRNA-1:exon:6075;Parent=Msa0758300-mRNA-1 |
| chr5_2 | five_prime_UTR | 13494796 | 13495093 | 13494796 | ID=Msa0758300-mRNA-1:five_prime_utr;Parent=Msa0758300-mRNA-1 |
| chr5_2 | five_prime_UTR | 13494624 | 13494647 | 13494624 | ID=Msa0758300-mRNA-1:five_prime_utr;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13494531 | 13494623 | 13494531 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13493953 | 13494049 | 13493953 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13493802 | 13493863 | 13493802 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13493178 | 13493423 | 13493178 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13493041 | 13493095 | 13493041 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | CDS | 13492256 | 13492383 | 13492256 | ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1 |
| chr5_2 | three_prime_UTR | 13492006 | 13492255 | 13492006 | ID=Msa0758300-mRNA-1:three_prime_utr;Parent=Msa0758300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
