AlfalfaGEDB | Msa0758300

M. sativa cultivar zhongmu-4 / Msa0758300

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758300	sp\|C0SVM5\|BBX19_ARATH	57.831	166	58	4	1	165	1	155	1.56e-56	181

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758300	A0A072UCQ4	89.730	185	1	1	1	167	1	185	1.09e-115	337

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0758300	TF	DBB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0074140	Msa0758300	0.813127	2.995739e-51	-8.615850e-47
Msa0074180	Msa0758300	0.808798	2.594454e-50	-8.615850e-47
Msa0116590	Msa0758300	0.806147	9.474662e-50	-8.615850e-47
Msa0350070	Msa0758300	0.808288	3.333842e-50	-8.615850e-47
Msa0355140	Msa0758300	-0.817622	2.996726e-52	-8.615850e-47
Msa0372290	Msa0758300	0.804690	1.914172e-49	-8.615850e-47
Msa0381500	Msa0758300	-0.803784	2.954706e-49	-8.615850e-47
Msa0387830	Msa0758300	-0.801611	8.298064e-49	-8.615850e-47
Msa0402210	Msa0758300	-0.824940	6.148105e-54	-8.615850e-47
Msa0435980	Msa0758300	0.829739	4.349015e-55	-8.615850e-47

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758300	MtrunA17_Chr5g0405151	90.217	184	0	1	1	166	1	184	1.06e-118	335
Msa0758300	MtrunA17_Chr2g0314671	55.294	85	37	1	1	84	1	85	1.09e-24	99.0
Msa0758300	MtrunA17_Chr2g0329511	49.462	93	46	1	1	92	1	93	1.52e-23	94.7
Msa0758300	MtrunA17_Chr4g0033641	48.387	93	47	1	1	92	1	93	1.40e-21	89.4
Msa0758300	MtrunA17_Chr3g0145061	44.186	86	46	1	1	84	1	86	2.40e-21	88.6
Msa0758300	MtrunA17_Chr3g0142221	47.126	87	43	1	1	84	1	87	1.62e-20	86.3
Msa0758300	MtrunA17_Chr4g0035651	44.186	86	46	1	1	84	1	86	3.57e-20	85.5
Msa0758300	MtrunA17_Chr3g0136701	51.852	81	31	1	4	84	5	77	3.98e-20	86.7
Msa0758300	MtrunA17_Chr1g0155811	47.674	86	43	1	1	84	1	86	3.24e-19	83.6
Msa0758300	MtrunA17_Chr1g0150471	46.914	81	35	1	4	84	5	77	3.78e-18	81.3

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0758300	AT4G38960.1	57.831	166	58	4	1	165	1	155	1.59e-57	181
Msa0758300	AT4G38960.6	57.831	166	58	4	1	165	1	155	1.59e-57	181
Msa0758300	AT2G21320.1	52.717	184	42	4	1	166	1	157	5.13e-54	171
Msa0758300	AT4G38960.3	45.933	209	58	5	1	165	1	198	1.38e-49	162
Msa0758300	AT4G38960.4	47.857	140	61	4	34	172	1	129	4.64e-36	125
Msa0758300	AT4G38960.5	50.376	133	54	4	34	165	1	122	2.88e-34	120
Msa0758300	AT4G38960.2	50.376	133	54	4	34	165	1	122	2.88e-34	120
Msa0758300	AT1G78600.1	55.294	85	37	1	1	84	1	85	5.11e-26	102
Msa0758300	AT1G78600.2	55.294	85	37	1	1	84	1	85	7.27e-26	102
Msa0758300	AT1G06040.2	48.387	93	47	1	1	92	1	93	1.32e-21	88.2

Showing 1 to 10 of 32 entries

Previous1 2 3 4Next

Find 63 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACACTATTCATTGAAAG+GGG	0.575642	5_2:+13492181	None:intergenic
AACGTATTGGCTGTTGCTAC+TGG	0.479764	5_2:-13493040	Msa0758300:intron
AACTTTCTTACAAACCCACA+TGG	0.572929	5_2:-13494801	Msa0758300:five_prime_UTR
AAGATGGAGGTTGTTGATGA+TGG	0.460545	5_2:+13494872	None:intergenic
AAGTATTATCCTCTATGTCA+TGG	0.531186	5_2:+13492112	None:intergenic
ACAAAATCATAGGATGCCTC+CGG	0.578363	5_2:-13493288	Msa0758300:CDS
ACACACTATTCATTGAAAGG+GGG	0.688107	5_2:+13492182	None:intergenic
ACCCTTCAACCCAAACCAAA+AGG	0.499384	5_2:-13494928	Msa0758300:five_prime_UTR
ACCTAGTAATGCAGACAACC+CGG	0.558690	5_2:-13493387	Msa0758300:CDS
ACTTCAGAACCTAATGCTGA+TGG	0.548946	5_2:-13493260	Msa0758300:CDS

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATGAGTCCATTTATGT+TGG	-	chr5_2:13492726-13492745	Msa0758300:intron	30.0%
GATTAGGTTAAAGATTGGAT+TGG	-	chr5_2:13492748-13492767	Msa0758300:intron	30.0%
CTTATAAGGTCAAACTCTTA+CGG	+	chr5_2:13492874-13492893	None:intergenic	30.0%
AAAGAAGAAACTTCTTACCA+GGG	+	chr5_2:13493145-13493164	None:intergenic	30.0%
AAAAGAAGAAACTTCTTACC+AGG	+	chr5_2:13493146-13493165	None:intergenic	30.0%
CATATCACATTGCAAACAAA+GGG	+	chr5_2:13493269-13493288	None:intergenic	30.0%
TCATATCACATTGCAAACAA+AGG	+	chr5_2:13493270-13493289	None:intergenic	30.0%
TGTGATATGATAGTTCATGT+TGG	-	chr5_2:13493280-13493299	Msa0758300:CDS	30.0%
ATGGAAGATATCTTCTCTTT+AGG	-	chr5_2:13493317-13493336	Msa0758300:CDS	30.0%
GACTAATAAAAGACACATTC+AGG	+	chr5_2:13493475-13493494	None:intergenic	30.0%

Showing 1 to 10 of 166 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	13492006	13495093	13492006	ID=Msa0758300;Name=Msa0758300
chr5_2	mRNA	13492006	13495093	13492006	ID=Msa0758300-mRNA-1;Parent=Msa0758300;Name=Msa0758300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=322\|0.5\|0.71\|0.85\|0.66\|0.42\|7\|250\|226
chr5_2	exon	13492006	13492383	13492006	ID=Msa0758300-mRNA-1:exon:6081;Parent=Msa0758300-mRNA-1
chr5_2	exon	13493041	13493095	13493041	ID=Msa0758300-mRNA-1:exon:6080;Parent=Msa0758300-mRNA-1
chr5_2	exon	13493178	13493423	13493178	ID=Msa0758300-mRNA-1:exon:6079;Parent=Msa0758300-mRNA-1
chr5_2	exon	13493802	13493863	13493802	ID=Msa0758300-mRNA-1:exon:6078;Parent=Msa0758300-mRNA-1
chr5_2	exon	13493953	13494049	13493953	ID=Msa0758300-mRNA-1:exon:6077;Parent=Msa0758300-mRNA-1
chr5_2	exon	13494531	13494647	13494531	ID=Msa0758300-mRNA-1:exon:6076;Parent=Msa0758300-mRNA-1
chr5_2	exon	13494796	13495093	13494796	ID=Msa0758300-mRNA-1:exon:6075;Parent=Msa0758300-mRNA-1
chr5_2	five_prime_UTR	13494796	13495093	13494796	ID=Msa0758300-mRNA-1:five_prime_utr;Parent=Msa0758300-mRNA-1
chr5_2	five_prime_UTR	13494624	13494647	13494624	ID=Msa0758300-mRNA-1:five_prime_utr;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13494531	13494623	13494531	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13493953	13494049	13493953	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13493802	13493863	13493802	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13493178	13493423	13493178	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13493041	13493095	13493041	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	CDS	13492256	13492383	13492256	ID=Msa0758300-mRNA-1:cds;Parent=Msa0758300-mRNA-1
chr5_2	three_prime_UTR	13492006	13492255	13492006	ID=Msa0758300-mRNA-1:three_prime_utr;Parent=Msa0758300-mRNA-1

Gene Sequence

>Msa0758300

ATGCGAACGCTTTGTGATGCTTGTGAGAGCGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGTGACGTGCCGCGGTGCGACATATGTGAGAATGCCCCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATTTTCCAGGCGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGATACTGCAAAATATACTTAGAGTGAAATTGATAAACGTATTGGCTGTTGCTACTGCCATAGGTTGTGCTACAAGGCAGTCTGATTCCAACAGGATCTTACATCAGAAATCTACCATAGATCGTGCTACAAAGCAATGCGAGTCTATAGAATTTGTTCTCTCATGTAGGAATTTAGTTTTTTAG

Protein sequence

>Msa0758300

MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQILQNILRVKLINVLAVATAIGCATRQSDSNRILHQKSTIDRATKQCESIEFVLSCRNLVF*