AlfalfaGEDB | Msa0717230

M. sativa cultivar zhongmu-4 / Msa0717230

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717230	XP_013453547.1	90.526	190	0	1	1	172	1	190	2.79e-119	345

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717230	sp\|C0SVM5\|BBX19_ARATH	57.831	166	58	4	1	165	1	155	3.85e-57	180

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717230	A0A072UCQ4	90.526	190	0	1	1	172	1	190	1.33e-119	345

TFs/TRs:

Gene ID	Type	Classification
Msa0717230	TF	DBB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa0717230	-0.829845	4.097939e-55	-8.615850e-47
Msa0015930	Msa0717230	-0.859652	3.566935e-63	-8.615850e-47
Msa0026680	Msa0717230	-0.804835	1.784725e-49	-8.615850e-47
Msa0026710	Msa0717230	-0.807406	5.134825e-50	-8.615850e-47
Msa0032090	Msa0717230	-0.810596	1.065675e-50	-8.615850e-47
Msa0032580	Msa0717230	-0.821189	4.609417e-53	-8.615850e-47
Msa0033110	Msa0717230	-0.810118	1.351221e-50	-8.615850e-47
Msa0033260	Msa0717230	-0.819842	9.390623e-53	-8.615850e-47
Msa0044000	Msa0717230	-0.807667	4.518682e-50	-8.615850e-47
Msa0048430	Msa0717230	-0.801183	1.015219e-48	-8.615850e-47
Msa0052640	Msa0717230	-0.810265	1.255910e-50	-8.615850e-47
Msa0052770	Msa0717230	-0.819982	8.725894e-53	-8.615850e-47
Msa0055180	Msa0717230	-0.816498	5.360503e-52	-8.615850e-47
Msa0058300	Msa0717230	-0.849741	2.662003e-60	-8.615850e-47
Msa0059110	Msa0717230	-0.800382	1.479302e-48	-8.615850e-47
Msa0075960	Msa0717230	-0.838750	2.388107e-57	-8.615850e-47
Msa0090570	Msa0717230	-0.809905	1.501634e-50	-8.615850e-47
Msa0091410	Msa0717230	-0.814483	1.505522e-51	-8.615850e-47
Msa0100740	Msa0717230	-0.808729	2.684442e-50	-8.615850e-47
Msa0605630	Msa0717230	-0.819616	1.057981e-52	-8.615850e-47
Msa0605650	Msa0717230	-0.862219	5.918014e-64	-8.615850e-47
Msa0609660	Msa0717230	0.828458	8.889759e-55	-8.615850e-47
Msa0641670	Msa0717230	-0.811062	8.449360e-51	-8.615850e-47
Msa0643560	Msa0717230	-0.810962	8.877474e-51	-8.615850e-47
Msa0646580	Msa0717230	-0.823619	1.256201e-53	-8.615850e-47
Msa0650500	Msa0717230	0.853005	3.179868e-61	-8.615850e-47
Msa0666560	Msa0717230	0.806176	9.341436e-50	-8.615850e-47
Msa0686210	Msa0717230	-0.817660	2.939367e-52	-8.615850e-47
Msa0692240	Msa0717230	0.852411	4.700234e-61	-8.615850e-47
Msa0692830	Msa0717230	-0.805763	1.141037e-49	-8.615850e-47
Msa0692950	Msa0717230	-0.821615	3.674016e-53	-8.615850e-47
Msa0698540	Msa0717230	-0.802823	4.672089e-49	-8.615850e-47
Msa0717230	Msa0727550	-0.820021	8.546564e-53	-8.615850e-47
Msa0717230	Msa0734740	-0.809052	2.289831e-50	-8.615850e-47
Msa0717230	Msa0737600	-0.826366	2.821707e-54	-8.615850e-47
Msa0717230	Msa0738380	-0.805690	1.181815e-49	-8.615850e-47
Msa0717230	Msa0764680	0.816609	5.062663e-52	-8.615850e-47
Msa0717230	Msa0765080	-0.813223	2.854287e-51	-8.615850e-47
Msa0717230	Msa0799680	0.984992	3.345383e-162	-8.615850e-47
Msa0717230	Msa0817730	-0.822214	2.670504e-53	-8.615850e-47
Msa0717230	Msa0858180	-0.827287	1.700670e-54	-8.615850e-47
Msa0717230	Msa0867730	-0.840858	6.751534e-58	-8.615850e-47
Msa0717230	Msa0892120	-0.804204	2.416530e-49	-8.615850e-47
Msa0717230	Msa0927260	-0.821388	4.146315e-53	-8.615850e-47
Msa0717230	Msa0968610	-0.825380	4.837166e-54	-8.615850e-47
Msa0717230	Msa0982130	-0.812616	3.875936e-51	-8.615850e-47
Msa0717230	Msa1029050	-0.827764	1.306297e-54	-8.615850e-47
Msa0717230	Msa1030620	-0.841193	5.511633e-58	-8.615850e-47
Msa0717230	Msa1037420	-0.866762	2.249123e-65	-8.615850e-47
Msa0717230	Msa1051200	-0.824234	9.015979e-54	-8.615850e-47
Msa0717230	Msa1120130	-0.804126	2.508181e-49	-8.615850e-47
Msa0717230	Msa1123810	-0.853581	2.174589e-61	-8.615850e-47
Msa0717230	Msa1137700	-0.802792	4.742489e-49	-8.615850e-47
Msa0717230	Msa1162270	-0.807955	3.925724e-50	-8.615850e-47
Msa0717230	Msa1172610	0.854870	9.225883e-62	-8.615850e-47
Msa0717230	Msa1173140	-0.819519	1.113288e-52	-8.615850e-47
Msa0717230	Msa1180500	-0.813773	2.160108e-51	-8.615850e-47
Msa0717230	Msa1181250	-0.804539	2.057841e-49	-8.615850e-47
Msa0717230	Msa1231840	-0.841227	5.401224e-58	-8.615850e-47
Msa0717230	Msa1238840	-0.803951	2.727946e-49	-8.615850e-47
Msa0717230	Msa1254730	-0.806956	6.394960e-50	-8.615850e-47
Msa0717230	Msa1274560	-0.828024	1.131455e-54	-8.615850e-47
Msa0717230	Msa1280320	-0.804614	1.985195e-49	-8.615850e-47
Msa0717230	Msa1280340	-0.820109	8.159496e-53	-8.615850e-47
Msa0717230	Msa1312520	-0.818627	1.776086e-52	-8.615850e-47
Msa0717230	Msa1353750	-0.804481	2.116113e-49	-8.615850e-47
Msa0717230	Msa1361520	-0.807293	5.425229e-50	-8.615850e-47
Msa0717230	Msa1384360	0.867593	1.220444e-65	-8.615850e-47
Msa0717230	Msa1385770	-0.861190	1.220795e-63	-8.615850e-47
Msa0717230	Msa1409240	-0.860307	2.262381e-63	-8.615850e-47
Msa0717230	Msa1432420	-0.803089	4.117831e-49	-8.615850e-47
Msa0717230	Msa1434140	-0.857845	1.236415e-62	-8.615850e-47
Msa0127800	Msa0717230	-0.806270	8.924803e-50	-8.615850e-47
Msa0138630	Msa0717230	-0.817002	4.132039e-52	-8.615850e-47
Msa0140630	Msa0717230	-0.830323	3.132316e-55	-8.615850e-47
Msa0145080	Msa0717230	-0.807742	4.356522e-50	-8.615850e-47
Msa0145440	Msa0717230	-0.808391	3.169851e-50	-8.615850e-47
Msa0145730	Msa0717230	-0.820099	8.200856e-53	-8.615850e-47
Msa0156370	Msa0717230	-0.861918	7.319987e-64	-8.615850e-47
Msa0159170	Msa0717230	-0.821474	3.960092e-53	-8.615850e-47
Msa0159340	Msa0717230	-0.840057	1.093736e-57	-8.615850e-47
Msa0162130	Msa0717230	-0.823056	1.700966e-53	-8.615850e-47
Msa0165660	Msa0717230	-0.800302	1.535807e-48	-8.615850e-47
Msa0172970	Msa0717230	-0.821274	4.406027e-53	-8.615850e-47
Msa0220720	Msa0717230	-0.804611	1.987565e-49	-8.615850e-47
Msa0233630	Msa0717230	0.811275	7.593634e-51	-8.615850e-47
Msa0375310	Msa0717230	-0.806383	8.449752e-50	-8.615850e-47
Msa0381500	Msa0717230	-0.830563	2.737453e-55	-8.615850e-47
Msa0387820	Msa0717230	-0.822983	1.768574e-53	-8.615850e-47
Msa0402210	Msa0717230	-0.812762	3.601889e-51	-8.615850e-47
Msa0402790	Msa0717230	-0.821406	4.105746e-53	-8.615850e-47
Msa0421500	Msa0717230	-0.814842	1.253561e-51	-8.615850e-47
Msa0423450	Msa0717230	0.831182	1.929242e-55	-8.615850e-47
Msa0435980	Msa0717230	0.869067	4.087092e-66	-8.615850e-47
Msa0467380	Msa0717230	-0.808305	3.305900e-50	-8.615850e-47
Msa0265430	Msa0717230	-0.822032	2.942480e-53	-8.615850e-47
Msa0299870	Msa0717230	-0.805740	1.153367e-49	-8.615850e-47
Msa0340380	Msa0717230	-0.844964	5.454240e-59	-8.615850e-47
Msa0350880	Msa0717230	-0.814995	1.159856e-51	-8.615850e-47
Msa0355140	Msa0717230	-0.803315	3.697167e-49	-8.615850e-47
Msa0492890	Msa0717230	-0.848169	7.275220e-60	-8.615850e-47
Msa0497210	Msa0717230	-0.822700	2.058238e-53	-8.615850e-47
Msa0513990	Msa0717230	-0.826596	2.487921e-54	-8.615850e-47
Msa0519950	Msa0717230	-0.838812	2.301956e-57	-8.615850e-47
Msa0527690	Msa0717230	0.863936	1.743758e-64	-8.615850e-47
Msa0550120	Msa0717230	-0.847856	8.871763e-60	-8.615850e-47
Msa0550150	Msa0717230	-0.828860	7.108439e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717230	MtrunA17_Chr5g0405151	90.217	184	0	1	1	166	1	184	3.43e-118	332
Msa0717230	MtrunA17_Chr2g0314671	55.294	85	37	1	1	84	1	85	2.41e-25	98.6
Msa0717230	MtrunA17_Chr2g0329511	49.462	93	46	1	1	92	1	93	2.68e-24	95.1
Msa0717230	MtrunA17_Chr4g0033641	48.387	93	47	1	1	92	1	93	2.27e-22	89.7
Msa0717230	MtrunA17_Chr3g0145061	44.186	86	46	1	1	84	1	86	9.36e-22	87.8
Msa0717230	MtrunA17_Chr3g0142221	47.126	87	43	1	1	84	1	87	4.25e-21	86.3
Msa0717230	MtrunA17_Chr3g0136701	51.852	81	31	1	4	84	5	77	1.73e-20	85.9
Msa0717230	MtrunA17_Chr4g0035651	44.186	86	46	1	1	84	1	86	2.52e-20	84.0
Msa0717230	MtrunA17_Chr1g0155811	47.674	86	43	1	1	84	1	86	1.37e-19	83.2
Msa0717230	MtrunA17_Chr1g0150471	46.914	81	35	1	4	84	5	77	9.44e-19	81.3
Msa0717230	MtrunA17_Chr7g0220721	48.750	80	33	1	5	84	26	97	4.83e-18	80.1
Msa0717230	MtrunA17_Chr4g0072871	43.210	81	38	1	4	84	21	93	2.18e-16	75.5
Msa0717230	MtrunA17_Chr7g0268691	38.750	80	41	1	5	84	20	91	2.04e-13	67.0
Msa0717230	MtrunA17_Chr5g0429341	36.559	93	49	2	1	93	1	83	3.42e-12	63.5
Msa0717230	MtrunA17_Chr3g0120711	38.095	84	44	1	1	84	1	76	5.91e-12	62.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0717230	AT4G38960.1	57.831	166	58	4	1	165	1	155	3.91e-58	180
Msa0717230	AT4G38960.6	57.831	166	58	4	1	165	1	155	3.91e-58	180
Msa0717230	AT2G21320.1	57.485	167	60	5	1	166	1	157	3.04e-54	170
Msa0717230	AT4G38960.3	46.667	210	55	6	1	165	1	198	5.42e-50	160
Msa0717230	AT4G38960.4	50.370	135	55	4	34	167	1	124	4.77e-36	123
Msa0717230	AT4G38960.5	50.376	133	54	4	34	165	1	122	6.37e-35	120
Msa0717230	AT4G38960.2	50.376	133	54	4	34	165	1	122	6.37e-35	120
Msa0717230	AT1G78600.1	55.294	85	37	1	1	84	1	85	1.03e-26	102
Msa0717230	AT1G78600.2	55.294	85	37	1	1	84	1	85	1.49e-26	102
Msa0717230	AT1G06040.2	48.387	93	47	1	1	92	1	93	3.53e-22	88.2
Msa0717230	AT1G06040.1	48.387	93	47	1	1	92	1	93	8.59e-22	89.0
Msa0717230	AT4G39070.1	47.674	86	43	1	1	84	1	86	1.10e-21	88.6
Msa0717230	AT1G75540.1	46.591	88	43	1	1	84	1	88	1.43e-21	89.7
Msa0717230	AT2G24790.1	50.617	81	32	1	4	84	7	79	1.74e-20	86.3
Msa0717230	AT2G31380.1	48.387	93	47	1	1	92	1	93	1.76e-20	85.1
Msa0717230	AT2G24790.2	50.617	81	32	1	4	84	7	79	2.56e-20	84.3
Msa0717230	AT5G15850.1	50.000	80	32	1	5	84	12	83	2.18e-19	84.0
Msa0717230	AT5G24930.1	48.148	81	34	1	4	84	5	77	2.19e-19	84.0
Msa0717230	AT3G02380.1	48.750	80	33	1	5	84	16	87	1.74e-18	81.3
Msa0717230	AT5G15840.1	50.000	80	32	1	5	84	20	91	5.47e-18	80.1
Msa0717230	AT5G15840.2	50.000	80	32	1	5	84	20	91	6.60e-18	79.0
Msa0717230	AT4G10240.1	43.956	91	44	1	1	84	1	91	1.85e-17	75.5
Msa0717230	AT2G47890.1	44.444	81	37	1	4	84	12	84	2.01e-16	75.5
Msa0717230	AT2G47890.3	44.444	81	37	1	4	84	12	84	2.39e-16	75.1
Msa0717230	AT2G47890.2	44.444	81	37	1	4	84	12	84	7.23e-16	72.8
Msa0717230	AT5G57660.1	42.500	80	34	2	5	84	22	89	8.87e-14	68.2
Msa0717230	AT1G28050.1	42.169	83	40	1	2	84	6	80	3.29e-13	67.0
Msa0717230	AT2G33500.1	40.000	80	40	1	5	84	12	83	1.21e-11	62.4
Msa0717230	AT2G33500.2	40.000	80	40	1	5	84	12	83	1.29e-11	62.4
Msa0717230	AT1G68190.1	37.931	87	46	1	1	87	10	88	4.14e-11	60.8
Msa0717230	AT1G68190.3	37.931	87	46	1	1	87	10	88	4.14e-11	60.8
Msa0717230	AT1G68190.2	37.931	87	46	1	1	87	39	117	6.04e-11	60.5

Find 44 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTGATGATGGAAAGTTAT+AGG	0.287871	5_1:+10932055	None:intergenic
CTTACAAACCCACATGGATT+TGG	0.305253	5_1:-10931967	Msa0717230:intron
TGTTCATGTATTCTGTTGTT+AGG	0.314824	5_1:+10930368	None:intergenic
CTCTTTGTTTCATAGTTTCC+AGG	0.319859	5_1:-10930590	Msa0717230:intron
AATAATCAGGTTAGAGTTCA+TGG	0.327088	5_1:-10930338	Msa0717230:CDS
AGTTAGCTAGTAGACATGTT+AGG	0.334611	5_1:-10931185	Msa0717230:CDS
TTAGAATTCCCATCAGCATT+AGG	0.367971	5_1:+10930425	None:intergenic
TTTGAGAAGTGAGAAAGCTT+TGG	0.415379	5_1:+10932140	None:intergenic
TGAACATGCATCAAATAATC+AGG	0.417562	5_1:-10930351	Msa0717230:CDS
GCCGGGTTGTCTGCATTACT+AGG	0.455216	5_1:+10930560	None:intergenic
AAGATGGAGGTTGTTGATGA+TGG	0.460545	5_1:+10932044	None:intergenic
GAGAGAAGCAACAAAATCAT+AGG	0.461871	5_1:-10930472	Msa0717230:CDS
GGATCTAGAGGTTGTGAAGC+CGG	0.462473	5_1:+10930542	None:intergenic
TCAGCATTAGGTTCTGAAGT+TGG	0.480629	5_1:+10930437	None:intergenic
GTGATGAAGTTTGATGAAGA+TGG	0.483306	5_1:+10932028	None:intergenic
TCGCACCGCGGCACGTCACT+CGG	0.487301	5_1:+10931147	None:intergenic
CATATCACATTGCAAACAAA+GGG	0.494623	5_1:+10930985	None:intergenic
ACCCTTCAACCCAAACCAAA+AGG	0.499384	5_1:-10932100	Msa0717230:five_prime_UTR
GTTAGCTAGTAGACATGTTA+GGG	0.499857	5_1:-10931184	Msa0717230:CDS
TTAGGTTCTGAAGTTGGAAC+CGG	0.500416	5_1:+10930443	None:intergenic
GCATTACTAGGTTTATCGCC+TGG	0.511209	5_1:+10930572	None:intergenic
TGCTGATGGGAATTCTAAGA+TGG	0.518367	5_1:-10930420	Msa0717230:CDS
GATCCAGGTGATATTAAAAG+AGG	0.532561	5_1:-10930524	Msa0717230:CDS
GATCTAGAGGTTGTGAAGCC+GGG	0.534120	5_1:+10930543	None:intergenic
TCATATCACATTGCAAACAA+AGG	0.534969	5_1:+10930984	None:intergenic
TTAATATCACCTGGATCTAG+AGG	0.539036	5_1:+10930530	None:intergenic
GCTTCACAACCTCTAGATCC+AGG	0.543997	5_1:-10930539	Msa0717230:CDS
TTCTTCTATTGCGAAACAGA+TGG	0.548785	5_1:-10931013	Msa0717230:CDS
ACTTCAGAACCTAATGCTGA+TGG	0.548946	5_1:-10930434	Msa0717230:CDS
GCTAGTAGACATGTTAGGGT+TGG	0.553453	5_1:-10931180	Msa0717230:CDS
ACCTAGTAATGCAGACAACC+CGG	0.558690	5_1:-10930561	Msa0717230:CDS
AACTTTCTTACAAACCCACA+TGG	0.572929	5_1:-10931973	Msa0717230:five_prime_UTR
ACAAAATCATAGGATGCCTC+CGG	0.578363	5_1:-10930462	Msa0717230:CDS
ATAATCAGGTTAGAGTTCAT+GGG	0.583574	5_1:-10930337	Msa0717230:CDS
CAAGTCCGAGTGACGTGCCG+CGG	0.583612	5_1:-10931152	Msa0717230:CDS
CTTCAGAACCTAATGCTGAT+GGG	0.588602	5_1:-10930433	Msa0717230:CDS
CTGTCGTGCTTGTGATGAGA+AGG	0.598560	5_1:-10931706	Msa0717230:intron
GGTTCTGAAGTTGGAACCGG+AGG	0.621508	5_1:+10930446	None:intergenic
ATGAAGTTTGATGAAGATGG+AGG	0.626151	5_1:+10932031	None:intergenic
GATATTCACCAAATCCATGT+GGG	0.642038	5_1:+10931959	None:intergenic
GACATATGTGAGAATGCCCC+TGG	0.645262	5_1:-10931126	Msa0717230:intron
AGATATTCACCAAATCCATG+TGG	0.682468	5_1:+10931958	None:intergenic
AGCAGCACAGAAAACTATAG+CGG	0.689026	5_1:+10931743	None:intergenic
TTCTCACATATGTCGCACCG+CGG	0.743597	5_1:+10931135	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTTAGTGTTATATTGTATT+GGG	+	chr5_1:10930510-10930529	None:intergenic	15.0%
!!	TATTTAGTGTTATATTGTAT+TGG	+	chr5_1:10930511-10930530	None:intergenic	15.0%
!!!	AAGAAAAGTGTATAAATAAA+GGG	+	chr5_1:10930575-10930594	None:intergenic	15.0%
!!!	TAAGAAAAGTGTATAAATAA+AGG	+	chr5_1:10930576-10930595	None:intergenic	15.0%
!!	TTATCAAAAAAAACTATGTT+GGG	+	chr5_1:10930803-10930822	None:intergenic	15.0%
!!	TTTATCAAAAAAAACTATGT+TGG	+	chr5_1:10930804-10930823	None:intergenic	15.0%
!!!	TATTTTAAAGTAGATAATTC+AGG	-	chr5_1:10930905-10930924	Msa0717230:intron	15.0%
!!	ATCCAATTATAAAAAATTGA+TGG	+	chr5_1:10931192-10931211	None:intergenic	15.0%
!!!	ATTTGATTTGATATTTTTTG+TGG	-	chr5_1:10931363-10931382	Msa0717230:intron	15.0%
!!!	TAATAATTTTGATACATTGA+GGG	+	chr5_1:10931994-10932013	None:intergenic	15.0%
!!!	ATAATAATTTTGATACATTG+AGG	+	chr5_1:10931995-10932014	None:intergenic	15.0%
!!	ATTTAGTGTTATATTGTATT+GGG	+	chr5_1:10930510-10930529	None:intergenic	15.0%
!!	TATTTAGTGTTATATTGTAT+TGG	+	chr5_1:10930511-10930530	None:intergenic	15.0%
!!!	AAGAAAAGTGTATAAATAAA+GGG	+	chr5_1:10930575-10930594	None:intergenic	15.0%
!!!	TAAGAAAAGTGTATAAATAA+AGG	+	chr5_1:10930576-10930595	None:intergenic	15.0%
!!	TTATCAAAAAAAACTATGTT+GGG	+	chr5_1:10930803-10930822	None:intergenic	15.0%
!!	TTTATCAAAAAAAACTATGT+TGG	+	chr5_1:10930804-10930823	None:intergenic	15.0%
!!!	TATTTTAAAGTAGATAATTC+AGG	-	chr5_1:10930905-10930924	Msa0717230:intron	15.0%
!!	ATCCAATTATAAAAAATTGA+TGG	+	chr5_1:10931192-10931211	None:intergenic	15.0%
!!!	ATTTGATTTGATATTTTTTG+TGG	-	chr5_1:10931363-10931382	Msa0717230:intron	15.0%
!!!	TAATAATTTTGATACATTGA+GGG	+	chr5_1:10931994-10932013	None:intergenic	15.0%
!!!	ATAATAATTTTGATACATTG+AGG	+	chr5_1:10931995-10932014	None:intergenic	15.0%
!!!	GACACTTTTTTTTAGAAAAT+GGG	+	chr5_1:10930441-10930460	None:intergenic	20.0%
!!	AAAGTGGAATATATTGTATT+GGG	+	chr5_1:10930551-10930570	None:intergenic	20.0%
!!!	AGAAAAGTGTATAAATAAAG+GGG	+	chr5_1:10930574-10930593	None:intergenic	20.0%
!!!	GACCATCAATTTTTTATAAT+TGG	-	chr5_1:10931187-10931206	Msa0717230:CDS	20.0%
!!	TTGTGTAAATTCAAAATCTA+AGG	-	chr5_1:10931389-10931408	Msa0717230:intron	20.0%
!!	GATTATACTTAAAACTAACT+TGG	+	chr5_1:10931502-10931521	None:intergenic	20.0%
!!!	AGTTAGTTTTAAGTATAATC+TGG	-	chr5_1:10931502-10931521	Msa0717230:intron	20.0%
!!!	TTTTAAGTATAATCTGGTAT+TGG	-	chr5_1:10931508-10931527	Msa0717230:intron	20.0%
!!!	AATTCAAGACTAATTCATTT+TGG	+	chr5_1:10931924-10931943	None:intergenic	20.0%
!!!	GACACTTTTTTTTAGAAAAT+GGG	+	chr5_1:10930441-10930460	None:intergenic	20.0%
!!	AAAGTGGAATATATTGTATT+GGG	+	chr5_1:10930551-10930570	None:intergenic	20.0%
!!!	AGAAAAGTGTATAAATAAAG+GGG	+	chr5_1:10930574-10930593	None:intergenic	20.0%
!!!	GACCATCAATTTTTTATAAT+TGG	-	chr5_1:10931187-10931206	Msa0717230:CDS	20.0%
!!	TTGTGTAAATTCAAAATCTA+AGG	-	chr5_1:10931389-10931408	Msa0717230:intron	20.0%
!!	GATTATACTTAAAACTAACT+TGG	+	chr5_1:10931502-10931521	None:intergenic	20.0%
!!!	AGTTAGTTTTAAGTATAATC+TGG	-	chr5_1:10931502-10931521	Msa0717230:intron	20.0%
!!!	TTTTAAGTATAATCTGGTAT+TGG	-	chr5_1:10931508-10931527	Msa0717230:intron	20.0%
!!!	AATTCAAGACTAATTCATTT+TGG	+	chr5_1:10931924-10931943	None:intergenic	20.0%
!!!	GGACACTTTTTTTTAGAAAA+TGG	+	chr5_1:10930442-10930461	None:intergenic	25.0%
!!!	TGAAATGAGTCAGTTATTTT+GGG	+	chr5_1:10930463-10930482	None:intergenic	25.0%
!!	TTGAAATGAGTCAGTTATTT+TGG	+	chr5_1:10930464-10930483	None:intergenic	25.0%
!	GAAAGTGGAATATATTGTAT+TGG	+	chr5_1:10930552-10930571	None:intergenic	25.0%
!!	TTTAAAGTAGATAATTCAGG+TGG	-	chr5_1:10930908-10930927	Msa0717230:intron	25.0%
!	TTAACCTAATCCAACATAAA+TGG	+	chr5_1:10931290-10931309	None:intergenic	25.0%
!	TTATGAAACTAAATTGCAAG+TGG	+	chr5_1:10931326-10931345	None:intergenic	25.0%
!!!	AATGACGATTTTAGCTTATA+AGG	+	chr5_1:10931440-10931459	None:intergenic	25.0%
!!	GACTAATTCATTTTGGATAA+AGG	+	chr5_1:10931917-10931936	None:intergenic	25.0%
!!!	TATCTTTTGTTAGTCACTTT+CGG	-	chr5_1:10932064-10932083	Msa0717230:five_prime_UTR	25.0%
!!!	TTTGAAATTTTGATACGTTC+AGG	-	chr5_1:10932094-10932113	Msa0717230:five_prime_UTR	25.0%
!!!	TTGAAATTTTGATACGTTCA+GGG	-	chr5_1:10932095-10932114	Msa0717230:five_prime_UTR	25.0%
!	GGTATTATACATACATTTGA+AGG	+	chr5_1:10932194-10932213	None:intergenic	25.0%
!!!	GGACACTTTTTTTTAGAAAA+TGG	+	chr5_1:10930442-10930461	None:intergenic	25.0%
!!!	TGAAATGAGTCAGTTATTTT+GGG	+	chr5_1:10930463-10930482	None:intergenic	25.0%
!!	TTGAAATGAGTCAGTTATTT+TGG	+	chr5_1:10930464-10930483	None:intergenic	25.0%
!	GAAAGTGGAATATATTGTAT+TGG	+	chr5_1:10930552-10930571	None:intergenic	25.0%
!!	TTTAAAGTAGATAATTCAGG+TGG	-	chr5_1:10930908-10930927	Msa0717230:intron	25.0%
!	TTAACCTAATCCAACATAAA+TGG	+	chr5_1:10931290-10931309	None:intergenic	25.0%
!	TTATGAAACTAAATTGCAAG+TGG	+	chr5_1:10931326-10931345	None:intergenic	25.0%
!!!	AATGACGATTTTAGCTTATA+AGG	+	chr5_1:10931440-10931459	None:intergenic	25.0%
!!	GACTAATTCATTTTGGATAA+AGG	+	chr5_1:10931917-10931936	None:intergenic	25.0%
!!!	TATCTTTTGTTAGTCACTTT+CGG	-	chr5_1:10932064-10932083	Msa0717230:five_prime_UTR	25.0%
!!!	TTTGAAATTTTGATACGTTC+AGG	-	chr5_1:10932094-10932113	Msa0717230:five_prime_UTR	25.0%
!!!	TTGAAATTTTGATACGTTCA+GGG	-	chr5_1:10932095-10932114	Msa0717230:five_prime_UTR	25.0%
!	GGTATTATACATACATTTGA+AGG	+	chr5_1:10932194-10932213	None:intergenic	25.0%
	TGTATAAATAAAGGGGAAAG+TGG	+	chr5_1:10930567-10930586	None:intergenic	30.0%
!!	ATAGGATTTTGAAGGAGTTT+GGG	+	chr5_1:10930733-10930752	None:intergenic	30.0%
!!	TATAGGATTTTGAAGGAGTT+TGG	+	chr5_1:10930734-10930753	None:intergenic	30.0%
!	GGAAAGTTATAGGATTTTGA+AGG	+	chr5_1:10930741-10930760	None:intergenic	30.0%
!!	TGTTGATGATGGAAAGTTAT+AGG	+	chr5_1:10930751-10930770	None:intergenic	30.0%
	TTGAATGAGTCCATTTATGT+TGG	-	chr5_1:10931277-10931296	Msa0717230:intron	30.0%
!	TGTTGGATTAGGTTAAAGAT+TGG	-	chr5_1:10931294-10931313	Msa0717230:intron	30.0%
	GATTAGGTTAAAGATTGGAT+TGG	-	chr5_1:10931299-10931318	Msa0717230:intron	30.0%
	CTTATAAGGTCAAACTCTTA+CGG	+	chr5_1:10931426-10931445	None:intergenic	30.0%
	TTCTTCAAACAAAATCGAGA+AGG	+	chr5_1:10931477-10931496	None:intergenic	30.0%
!!	TGGAATTTGATTGATTTTCC+TGG	-	chr5_1:10931528-10931547	Msa0717230:intron	30.0%
	AAAGAAGAAACTTCTTACCA+GGG	+	chr5_1:10931697-10931716	None:intergenic	30.0%
	AAAAGAAGAAACTTCTTACC+AGG	+	chr5_1:10931698-10931717	None:intergenic	30.0%
	CATATCACATTGCAAACAAA+GGG	+	chr5_1:10931821-10931840	None:intergenic	30.0%
	TCATATCACATTGCAAACAA+AGG	+	chr5_1:10931822-10931841	None:intergenic	30.0%
	TGTGATATGATAGTTCATGT+TGG	-	chr5_1:10931832-10931851	Msa0717230:intron	30.0%
	ATGGAAGATATCTTCTCTTT+AGG	-	chr5_1:10931869-10931888	Msa0717230:intron	30.0%
!	TTTTAATCCTTGAATGTGTG+AGG	-	chr5_1:10931955-10931974	Msa0717230:intron	30.0%
	GACTAATAAAAGACACATTC+AGG	+	chr5_1:10932027-10932046	None:intergenic	30.0%
!	GTGTCTTTTATTAGTCAGTT+TGG	-	chr5_1:10932031-10932050	Msa0717230:five_prime_UTR	30.0%
	ACTAACAAAAGATACATCTG+AGG	+	chr5_1:10932058-10932077	None:intergenic	30.0%
!!	ATCTTTTGTTAGTCACTTTC+GGG	-	chr5_1:10932065-10932084	Msa0717230:five_prime_UTR	30.0%
	TCCACTTCCTAAACAAAAAA+TGG	-	chr5_1:10932308-10932327	Msa0717230:intron	30.0%
	CCACTTCCTAAACAAAAAAT+GGG	-	chr5_1:10932309-10932328	Msa0717230:intron	30.0%
!!!	TTCTCTCCCATTTTTTGTTT+AGG	+	chr5_1:10932318-10932337	None:intergenic	30.0%
	TGTTCATGTATTCTGTTGTT+AGG	+	chr5_1:10932438-10932457	None:intergenic	30.0%
	TGAACATGCATCAAATAATC+AGG	-	chr5_1:10932452-10932471	Msa0717230:five_prime_UTR	30.0%
	AATAATCAGGTTAGAGTTCA+TGG	-	chr5_1:10932465-10932484	Msa0717230:five_prime_UTR	30.0%
	ATAATCAGGTTAGAGTTCAT+GGG	-	chr5_1:10932466-10932485	Msa0717230:five_prime_UTR	30.0%
	TGTATAAATAAAGGGGAAAG+TGG	+	chr5_1:10930567-10930586	None:intergenic	30.0%
!!	ATAGGATTTTGAAGGAGTTT+GGG	+	chr5_1:10930733-10930752	None:intergenic	30.0%
!!	TATAGGATTTTGAAGGAGTT+TGG	+	chr5_1:10930734-10930753	None:intergenic	30.0%
!	GGAAAGTTATAGGATTTTGA+AGG	+	chr5_1:10930741-10930760	None:intergenic	30.0%
!!	TGTTGATGATGGAAAGTTAT+AGG	+	chr5_1:10930751-10930770	None:intergenic	30.0%
	TTGAATGAGTCCATTTATGT+TGG	-	chr5_1:10931277-10931296	Msa0717230:intron	30.0%
!	TGTTGGATTAGGTTAAAGAT+TGG	-	chr5_1:10931294-10931313	Msa0717230:intron	30.0%
	GATTAGGTTAAAGATTGGAT+TGG	-	chr5_1:10931299-10931318	Msa0717230:intron	30.0%
	CTTATAAGGTCAAACTCTTA+CGG	+	chr5_1:10931426-10931445	None:intergenic	30.0%
	TTCTTCAAACAAAATCGAGA+AGG	+	chr5_1:10931477-10931496	None:intergenic	30.0%
!!	TGGAATTTGATTGATTTTCC+TGG	-	chr5_1:10931528-10931547	Msa0717230:intron	30.0%
	AAAGAAGAAACTTCTTACCA+GGG	+	chr5_1:10931697-10931716	None:intergenic	30.0%
	AAAAGAAGAAACTTCTTACC+AGG	+	chr5_1:10931698-10931717	None:intergenic	30.0%
	CATATCACATTGCAAACAAA+GGG	+	chr5_1:10931821-10931840	None:intergenic	30.0%
	TCATATCACATTGCAAACAA+AGG	+	chr5_1:10931822-10931841	None:intergenic	30.0%
	TGTGATATGATAGTTCATGT+TGG	-	chr5_1:10931832-10931851	Msa0717230:intron	30.0%
	ATGGAAGATATCTTCTCTTT+AGG	-	chr5_1:10931869-10931888	Msa0717230:intron	30.0%
!	TTTTAATCCTTGAATGTGTG+AGG	-	chr5_1:10931955-10931974	Msa0717230:intron	30.0%
	GACTAATAAAAGACACATTC+AGG	+	chr5_1:10932027-10932046	None:intergenic	30.0%
!	GTGTCTTTTATTAGTCAGTT+TGG	-	chr5_1:10932031-10932050	Msa0717230:five_prime_UTR	30.0%
	ACTAACAAAAGATACATCTG+AGG	+	chr5_1:10932058-10932077	None:intergenic	30.0%
!!	ATCTTTTGTTAGTCACTTTC+GGG	-	chr5_1:10932065-10932084	Msa0717230:five_prime_UTR	30.0%
	TCCACTTCCTAAACAAAAAA+TGG	-	chr5_1:10932308-10932327	Msa0717230:intron	30.0%
	CCACTTCCTAAACAAAAAAT+GGG	-	chr5_1:10932309-10932328	Msa0717230:intron	30.0%
!!!	TTCTCTCCCATTTTTTGTTT+AGG	+	chr5_1:10932318-10932337	None:intergenic	30.0%
	TGTTCATGTATTCTGTTGTT+AGG	+	chr5_1:10932438-10932457	None:intergenic	30.0%
	TGAACATGCATCAAATAATC+AGG	-	chr5_1:10932452-10932471	Msa0717230:five_prime_UTR	30.0%
	AATAATCAGGTTAGAGTTCA+TGG	-	chr5_1:10932465-10932484	Msa0717230:five_prime_UTR	30.0%
	ATAATCAGGTTAGAGTTCAT+GGG	-	chr5_1:10932466-10932485	Msa0717230:five_prime_UTR	30.0%
	AGAAAATGGGTCAGTTATTC+CGG	+	chr5_1:10930428-10930447	None:intergenic	35.0%
	TCTGTGTGAAAAACCAAAGT+AGG	-	chr5_1:10930597-10930616	Msa0717230:intron	35.0%
	CCAAAGTAGGTCAATTATAC+CGG	-	chr5_1:10930610-10930629	Msa0717230:intron	35.0%
	CAAAGTAGGTCAATTATACC+GGG	-	chr5_1:10930611-10930630	Msa0717230:intron	35.0%
	TTTGAGAAGTGAGAAAGCTT+TGG	+	chr5_1:10930666-10930685	None:intergenic	35.0%
!!	TAGGATTTTGAAGGAGTTTG+GGG	+	chr5_1:10930732-10930751	None:intergenic	35.0%
	ATGAAGTTTGATGAAGATGG+AGG	+	chr5_1:10930775-10930794	None:intergenic	35.0%
	GTGATGAAGTTTGATGAAGA+TGG	+	chr5_1:10930778-10930797	None:intergenic	35.0%
	AACTTTCTTACAAACCCACA+TGG	-	chr5_1:10930830-10930849	Msa0717230:intron	35.0%
	GATATTCACCAAATCCATGT+GGG	+	chr5_1:10930847-10930866	None:intergenic	35.0%
	AGATATTCACCAAATCCATG+TGG	+	chr5_1:10930848-10930867	None:intergenic	35.0%
	GAGTCCATTTATGTTGGATT+AGG	-	chr5_1:10931283-10931302	Msa0717230:intron	35.0%
	TTAGTTGAAAGACATTGACC+AGG	+	chr5_1:10931549-10931568	None:intergenic	35.0%
	GGTCAATGTCTTTCAACTAA+TGG	-	chr5_1:10931549-10931568	Msa0717230:intron	35.0%
!	GGTTCAAAGTTTGCAACTTT+TGG	-	chr5_1:10931570-10931589	Msa0717230:intron	35.0%
!!	TTGCAACTTTTGGAAATTGC+AGG	-	chr5_1:10931580-10931599	Msa0717230:intron	35.0%
	AGTTAGCTAGTAGACATGTT+AGG	-	chr5_1:10931618-10931637	Msa0717230:intron	35.0%
	GTTAGCTAGTAGACATGTTA+GGG	-	chr5_1:10931619-10931638	Msa0717230:intron	35.0%
	AAGAAGAAACTTCTTACCAG+GGG	+	chr5_1:10931696-10931715	None:intergenic	35.0%
	ATCAGAAGAACAACACTACA+AGG	+	chr5_1:10931724-10931743	None:intergenic	35.0%
	TTCTTCTATTGCGAAACAGA+TGG	-	chr5_1:10931790-10931809	Msa0717230:exon	35.0%
	GATATGATAGTTCATGTTGG+TGG	-	chr5_1:10931835-10931854	Msa0717230:intron	35.0%
!!	TCTTTTGTTAGTCACTTTCG+GGG	-	chr5_1:10932066-10932085	Msa0717230:five_prime_UTR	35.0%
	TGACATCGTTTCACACATTT+AGG	-	chr5_1:10932125-10932144	Msa0717230:five_prime_UTR	35.0%
	GACATCGTTTCACACATTTA+GGG	-	chr5_1:10932126-10932145	Msa0717230:five_prime_UTR	35.0%
	CTGGAAACTATGAAACAAAG+AGG	+	chr5_1:10932215-10932234	None:intergenic	35.0%
!	CTCTTTGTTTCATAGTTTCC+AGG	-	chr5_1:10932213-10932232	Msa0717230:intron	35.0%
	TTAATATCACCTGGATCTAG+AGG	+	chr5_1:10932276-10932295	None:intergenic	35.0%
	GATCCAGGTGATATTAAAAG+AGG	-	chr5_1:10932279-10932298	Msa0717230:intron	35.0%
!	TGTCCTCTTTTAATATCACC+TGG	+	chr5_1:10932285-10932304	None:intergenic	35.0%
!!!	CCCATTTTTTGTTTAGGAAG+TGG	+	chr5_1:10932312-10932331	None:intergenic	35.0%
	GAGAGAAGCAACAAAATCAT+AGG	-	chr5_1:10932331-10932350	Msa0717230:intron	35.0%
	TTAGAATTCCCATCAGCATT+AGG	+	chr5_1:10932381-10932400	None:intergenic	35.0%
	AGAAAATGGGTCAGTTATTC+CGG	+	chr5_1:10930428-10930447	None:intergenic	35.0%
	TCTGTGTGAAAAACCAAAGT+AGG	-	chr5_1:10930597-10930616	Msa0717230:intron	35.0%
	CCAAAGTAGGTCAATTATAC+CGG	-	chr5_1:10930610-10930629	Msa0717230:intron	35.0%
	CAAAGTAGGTCAATTATACC+GGG	-	chr5_1:10930611-10930630	Msa0717230:intron	35.0%
	TTTGAGAAGTGAGAAAGCTT+TGG	+	chr5_1:10930666-10930685	None:intergenic	35.0%
!!	TAGGATTTTGAAGGAGTTTG+GGG	+	chr5_1:10930732-10930751	None:intergenic	35.0%
	ATGAAGTTTGATGAAGATGG+AGG	+	chr5_1:10930775-10930794	None:intergenic	35.0%
	GTGATGAAGTTTGATGAAGA+TGG	+	chr5_1:10930778-10930797	None:intergenic	35.0%
	AACTTTCTTACAAACCCACA+TGG	-	chr5_1:10930830-10930849	Msa0717230:intron	35.0%
	GATATTCACCAAATCCATGT+GGG	+	chr5_1:10930847-10930866	None:intergenic	35.0%
	AGATATTCACCAAATCCATG+TGG	+	chr5_1:10930848-10930867	None:intergenic	35.0%
	GAGTCCATTTATGTTGGATT+AGG	-	chr5_1:10931283-10931302	Msa0717230:intron	35.0%
	TTAGTTGAAAGACATTGACC+AGG	+	chr5_1:10931549-10931568	None:intergenic	35.0%
	GGTCAATGTCTTTCAACTAA+TGG	-	chr5_1:10931549-10931568	Msa0717230:intron	35.0%
!	GGTTCAAAGTTTGCAACTTT+TGG	-	chr5_1:10931570-10931589	Msa0717230:intron	35.0%
!!	TTGCAACTTTTGGAAATTGC+AGG	-	chr5_1:10931580-10931599	Msa0717230:intron	35.0%
	AGTTAGCTAGTAGACATGTT+AGG	-	chr5_1:10931618-10931637	Msa0717230:intron	35.0%
	GTTAGCTAGTAGACATGTTA+GGG	-	chr5_1:10931619-10931638	Msa0717230:intron	35.0%
	AAGAAGAAACTTCTTACCAG+GGG	+	chr5_1:10931696-10931715	None:intergenic	35.0%
	ATCAGAAGAACAACACTACA+AGG	+	chr5_1:10931724-10931743	None:intergenic	35.0%
	TTCTTCTATTGCGAAACAGA+TGG	-	chr5_1:10931790-10931809	Msa0717230:exon	35.0%
	GATATGATAGTTCATGTTGG+TGG	-	chr5_1:10931835-10931854	Msa0717230:intron	35.0%
!!	TCTTTTGTTAGTCACTTTCG+GGG	-	chr5_1:10932066-10932085	Msa0717230:five_prime_UTR	35.0%
	TGACATCGTTTCACACATTT+AGG	-	chr5_1:10932125-10932144	Msa0717230:five_prime_UTR	35.0%
	GACATCGTTTCACACATTTA+GGG	-	chr5_1:10932126-10932145	Msa0717230:five_prime_UTR	35.0%
	CTGGAAACTATGAAACAAAG+AGG	+	chr5_1:10932215-10932234	None:intergenic	35.0%
!	CTCTTTGTTTCATAGTTTCC+AGG	-	chr5_1:10932213-10932232	Msa0717230:intron	35.0%
	TTAATATCACCTGGATCTAG+AGG	+	chr5_1:10932276-10932295	None:intergenic	35.0%
	GATCCAGGTGATATTAAAAG+AGG	-	chr5_1:10932279-10932298	Msa0717230:intron	35.0%
!	TGTCCTCTTTTAATATCACC+TGG	+	chr5_1:10932285-10932304	None:intergenic	35.0%
!!!	CCCATTTTTTGTTTAGGAAG+TGG	+	chr5_1:10932312-10932331	None:intergenic	35.0%
	GAGAGAAGCAACAAAATCAT+AGG	-	chr5_1:10932331-10932350	Msa0717230:intron	35.0%
	TTAGAATTCCCATCAGCATT+AGG	+	chr5_1:10932381-10932400	None:intergenic	35.0%
	GAAAATGGGTCAGTTATTCC+GGG	+	chr5_1:10930427-10930446	None:intergenic	40.0%
	CCGGTATAATTGACCTACTT+TGG	+	chr5_1:10930613-10930632	None:intergenic	40.0%
!!!	ACCTTTTGGTTTGGGTTGAA+GGG	+	chr5_1:10930707-10930726	None:intergenic	40.0%
!!	AGGATTTTGAAGGAGTTTGG+GGG	+	chr5_1:10930731-10930750	None:intergenic	40.0%
!	AAGATGGAGGTTGTTGATGA+TGG	+	chr5_1:10930762-10930781	None:intergenic	40.0%
	CTTACAAACCCACATGGATT+TGG	-	chr5_1:10930836-10930855	Msa0717230:intron	40.0%
	AGCAGCACAGAAAACTATAG+CGG	+	chr5_1:10931063-10931082	None:intergenic	40.0%
	TCTCTTTAGGCAAAGAGTTG+AGG	-	chr5_1:10931882-10931901	Msa0717230:intron	40.0%
	ACAAAATCATAGGATGCCTC+CGG	-	chr5_1:10932341-10932360	Msa0717230:intron	40.0%
!!	TTAGGTTCTGAAGTTGGAAC+CGG	+	chr5_1:10932363-10932382	None:intergenic	40.0%
!!	TCAGCATTAGGTTCTGAAGT+TGG	+	chr5_1:10932369-10932388	None:intergenic	40.0%
	ACTTCAGAACCTAATGCTGA+TGG	-	chr5_1:10932369-10932388	Msa0717230:intron	40.0%
	CTTCAGAACCTAATGCTGAT+GGG	-	chr5_1:10932370-10932389	Msa0717230:intron	40.0%
!	TGCTGATGGGAATTCTAAGA+TGG	-	chr5_1:10932383-10932402	Msa0717230:intron	40.0%
	GAAAATGGGTCAGTTATTCC+GGG	+	chr5_1:10930427-10930446	None:intergenic	40.0%
	CCGGTATAATTGACCTACTT+TGG	+	chr5_1:10930613-10930632	None:intergenic	40.0%
!!!	ACCTTTTGGTTTGGGTTGAA+GGG	+	chr5_1:10930707-10930726	None:intergenic	40.0%
!!	AGGATTTTGAAGGAGTTTGG+GGG	+	chr5_1:10930731-10930750	None:intergenic	40.0%
!	AAGATGGAGGTTGTTGATGA+TGG	+	chr5_1:10930762-10930781	None:intergenic	40.0%
	CTTACAAACCCACATGGATT+TGG	-	chr5_1:10930836-10930855	Msa0717230:intron	40.0%
	AGCAGCACAGAAAACTATAG+CGG	+	chr5_1:10931063-10931082	None:intergenic	40.0%
	TCTCTTTAGGCAAAGAGTTG+AGG	-	chr5_1:10931882-10931901	Msa0717230:intron	40.0%
	ACAAAATCATAGGATGCCTC+CGG	-	chr5_1:10932341-10932360	Msa0717230:intron	40.0%
!!	TTAGGTTCTGAAGTTGGAAC+CGG	+	chr5_1:10932363-10932382	None:intergenic	40.0%
!!	TCAGCATTAGGTTCTGAAGT+TGG	+	chr5_1:10932369-10932388	None:intergenic	40.0%
	ACTTCAGAACCTAATGCTGA+TGG	-	chr5_1:10932369-10932388	Msa0717230:intron	40.0%
	CTTCAGAACCTAATGCTGAT+GGG	-	chr5_1:10932370-10932389	Msa0717230:intron	40.0%
!	TGCTGATGGGAATTCTAAGA+TGG	-	chr5_1:10932383-10932402	Msa0717230:intron	40.0%
	TATTATTACTCCCTCCGTCC+CGG	-	chr5_1:10930406-10930425	Msa0717230:CDS	45.0%
	GTAGGTCAATTATACCGGGA+CGG	-	chr5_1:10930615-10930634	Msa0717230:intron	45.0%
	ACCCTTCAACCCAAACCAAA+AGG	-	chr5_1:10930703-10930722	Msa0717230:intron	45.0%
!!!	GACCTTTTGGTTTGGGTTGA+AGG	+	chr5_1:10930708-10930727	None:intergenic	45.0%
!!	GGATTTTGAAGGAGTTTGGG+GGG	+	chr5_1:10930730-10930749	None:intergenic	45.0%
!!	AGTTTTCTGTGCTGCTGATG+AGG	-	chr5_1:10931067-10931086	Msa0717230:intron	45.0%
	GCTAGTAGACATGTTAGGGT+TGG	-	chr5_1:10931623-10931642	Msa0717230:intron	45.0%
!!	GTTGGTGGTAAAAGAACGCA+TGG	-	chr5_1:10931850-10931869	Msa0717230:intron	45.0%
	GCATTACTAGGTTTATCGCC+TGG	+	chr5_1:10932234-10932253	None:intergenic	45.0%
	ACCTAGTAATGCAGACAACC+CGG	-	chr5_1:10932242-10932261	Msa0717230:intron	45.0%
	TATTATTACTCCCTCCGTCC+CGG	-	chr5_1:10930406-10930425	Msa0717230:CDS	45.0%
	GTAGGTCAATTATACCGGGA+CGG	-	chr5_1:10930615-10930634	Msa0717230:intron	45.0%
	ACCCTTCAACCCAAACCAAA+AGG	-	chr5_1:10930703-10930722	Msa0717230:intron	45.0%
!!!	GACCTTTTGGTTTGGGTTGA+AGG	+	chr5_1:10930708-10930727	None:intergenic	45.0%
!!	GGATTTTGAAGGAGTTTGGG+GGG	+	chr5_1:10930730-10930749	None:intergenic	45.0%
!!	AGTTTTCTGTGCTGCTGATG+AGG	-	chr5_1:10931067-10931086	Msa0717230:intron	45.0%
	GCTAGTAGACATGTTAGGGT+TGG	-	chr5_1:10931623-10931642	Msa0717230:intron	45.0%
!!	GTTGGTGGTAAAAGAACGCA+TGG	-	chr5_1:10931850-10931869	Msa0717230:intron	45.0%
	GCATTACTAGGTTTATCGCC+TGG	+	chr5_1:10932234-10932253	None:intergenic	45.0%
	ACCTAGTAATGCAGACAACC+CGG	-	chr5_1:10932242-10932261	Msa0717230:intron	45.0%
	ATGGGTCAGTTATTCCGGGA+CGG	+	chr5_1:10930423-10930442	None:intergenic	50.0%
	CACAAATACTACCTCCGTCC+CGG	+	chr5_1:10930632-10930651	None:intergenic	50.0%
!!!	TTGGGGGGACCTTTTGGTTT+GGG	+	chr5_1:10930715-10930734	None:intergenic	50.0%
!!	TTTGGGGGGACCTTTTGGTT+TGG	+	chr5_1:10930716-10930735	None:intergenic	50.0%
	CTGTCGTGCTTGTGATGAGA+AGG	-	chr5_1:10931097-10931116	Msa0717230:intron	50.0%
	TTCTCACATATGTCGCACCG+CGG	+	chr5_1:10931671-10931690	None:intergenic	50.0%
	GACATATGTGAGAATGCCCC+TGG	-	chr5_1:10931677-10931696	Msa0717230:intron	50.0%
	GTGACTGCCTCACACATTCA+AGG	+	chr5_1:10931965-10931984	None:intergenic	50.0%
	GATCTAGAGGTTGTGAAGCC+GGG	+	chr5_1:10932263-10932282	None:intergenic	50.0%
	GGATCTAGAGGTTGTGAAGC+CGG	+	chr5_1:10932264-10932283	None:intergenic	50.0%
	GCTTCACAACCTCTAGATCC+AGG	-	chr5_1:10932264-10932283	Msa0717230:intron	50.0%
	ATGGGTCAGTTATTCCGGGA+CGG	+	chr5_1:10930423-10930442	None:intergenic	50.0%
	CACAAATACTACCTCCGTCC+CGG	+	chr5_1:10930632-10930651	None:intergenic	50.0%
!!!	TTGGGGGGACCTTTTGGTTT+GGG	+	chr5_1:10930715-10930734	None:intergenic	50.0%
!!	TTTGGGGGGACCTTTTGGTT+TGG	+	chr5_1:10930716-10930735	None:intergenic	50.0%
	CTGTCGTGCTTGTGATGAGA+AGG	-	chr5_1:10931097-10931116	Msa0717230:intron	50.0%
	TTCTCACATATGTCGCACCG+CGG	+	chr5_1:10931671-10931690	None:intergenic	50.0%
	GACATATGTGAGAATGCCCC+TGG	-	chr5_1:10931677-10931696	Msa0717230:intron	50.0%
	GTGACTGCCTCACACATTCA+AGG	+	chr5_1:10931965-10931984	None:intergenic	50.0%
	GATCTAGAGGTTGTGAAGCC+GGG	+	chr5_1:10932263-10932282	None:intergenic	50.0%
	GGATCTAGAGGTTGTGAAGC+CGG	+	chr5_1:10932264-10932283	None:intergenic	50.0%
	GCTTCACAACCTCTAGATCC+AGG	-	chr5_1:10932264-10932283	Msa0717230:intron	50.0%
	GTCAGTTATTCCGGGACGGA+GGG	+	chr5_1:10930419-10930438	None:intergenic	55.0%
	GGTCAATTATACCGGGACGG+AGG	-	chr5_1:10930618-10930637	Msa0717230:intron	55.0%
!	AGGAGTTTGGGGGGACCTTT+TGG	+	chr5_1:10930721-10930740	None:intergenic	55.0%
	GCCGGGTTGTCTGCATTACT+AGG	+	chr5_1:10932246-10932265	None:intergenic	55.0%
!!	GGTTCTGAAGTTGGAACCGG+AGG	+	chr5_1:10932360-10932379	None:intergenic	55.0%
	GTCAGTTATTCCGGGACGGA+GGG	+	chr5_1:10930419-10930438	None:intergenic	55.0%
	GGTCAATTATACCGGGACGG+AGG	-	chr5_1:10930618-10930637	Msa0717230:intron	55.0%
!	AGGAGTTTGGGGGGACCTTT+TGG	+	chr5_1:10930721-10930740	None:intergenic	55.0%
	GCCGGGTTGTCTGCATTACT+AGG	+	chr5_1:10932246-10932265	None:intergenic	55.0%
!!	GGTTCTGAAGTTGGAACCGG+AGG	+	chr5_1:10932360-10932379	None:intergenic	55.0%
	GGTCAGTTATTCCGGGACGG+AGG	+	chr5_1:10930420-10930439	None:intergenic	60.0%
	GGTCAGTTATTCCGGGACGG+AGG	+	chr5_1:10930420-10930439	None:intergenic	60.0%
	CAAGTCCGAGTGACGTGCCG+CGG	-	chr5_1:10931651-10931670	Msa0717230:intron	65.0%
	CAAGTCCGAGTGACGTGCCG+CGG	-	chr5_1:10931651-10931670	Msa0717230:intron	65.0%
	TCGCACCGCGGCACGTCACT+CGG	+	chr5_1:10931659-10931678	None:intergenic	70.0%
	TCGCACCGCGGCACGTCACT+CGG	+	chr5_1:10931659-10931678	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	10930331	10932494	10930331	ID=Msa0717230;Name=Msa0717230
chr5_1	mRNA	10930331	10932494	10930331	ID=Msa0717230-mRNA-1;Parent=Msa0717230;Name=Msa0717230-mRNA-1;_AED=0.25;_eAED=0.25;_QI=319\|0.8\|0.66\|1\|0.4\|0.33\|6\|0\|172
chr5_1	exon	10930331	10930597	10930331	ID=Msa0717230-mRNA-1:exon:4499;Parent=Msa0717230-mRNA-1
chr5_1	exon	10930976	10931037	10930976	ID=Msa0717230-mRNA-1:exon:4498;Parent=Msa0717230-mRNA-1
chr5_1	exon	10931127	10931223	10931127	ID=Msa0717230-mRNA-1:exon:4497;Parent=Msa0717230-mRNA-1
chr5_1	exon	10931707	10931823	10931707	ID=Msa0717230-mRNA-1:exon:4496;Parent=Msa0717230-mRNA-1
chr5_1	exon	10931968	10932185	10931968	ID=Msa0717230-mRNA-1:exon:4495;Parent=Msa0717230-mRNA-1
chr5_1	exon	10932418	10932494	10932418	ID=Msa0717230-mRNA-1:exon:4494;Parent=Msa0717230-mRNA-1
chr5_1	five_prime_UTR	10932418	10932494	10932418	ID=Msa0717230-mRNA-1:five_prime_utr;Parent=Msa0717230-mRNA-1
chr5_1	five_prime_UTR	10931968	10932185	10931968	ID=Msa0717230-mRNA-1:five_prime_utr;Parent=Msa0717230-mRNA-1
chr5_1	five_prime_UTR	10931800	10931823	10931800	ID=Msa0717230-mRNA-1:five_prime_utr;Parent=Msa0717230-mRNA-1
chr5_1	CDS	10931707	10931799	10931707	ID=Msa0717230-mRNA-1:cds;Parent=Msa0717230-mRNA-1
chr5_1	CDS	10931127	10931223	10931127	ID=Msa0717230-mRNA-1:cds;Parent=Msa0717230-mRNA-1
chr5_1	CDS	10930976	10931037	10930976	ID=Msa0717230-mRNA-1:cds;Parent=Msa0717230-mRNA-1
chr5_1	CDS	10930331	10930597	10930331	ID=Msa0717230-mRNA-1:cds;Parent=Msa0717230-mRNA-1

Gene Sequence

>Msa0717230

ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCTGCCGCTATAGTTTTCTGTGCTGCTGATGAGGCTGCACTCTGTCGTGCTTGTGATGAGAAGGTTCATATGTGCAATAAGTTAGCTAGTAGACATGTTAGGGTTGGTCTTGCAAGTCCGAGTGACGTGCCGCGGTGCGACATATGTGAGAATGCCCCTGCTTTCTTCTATTGCGAAACAGATGGAAGTTCCCTTTGTTTGCAATGTGATATGATAGTTCATTTTCCAGGCGATAAACCTAGTAATGCAGACAACCCGGCTTCACAACCTCTAGATCCAGGTGATATTAAAAGAGGACAAAGTCCACTTCCTAAACAAAAAATGGGAGAGAAGCAACAAAATCATAGGATGCCTCCGGTTCCAACTTCAGAACCTAATGCTGATGGGAATTCTAAGATGGAAAATAAATTGATTGATTTGAACATGAAGCCTAACAACAGAATACATGAACATGCATCAAATAATCAGGTTAGAGTTCATGGGAAGTAA

Protein sequence

>Msa0717230

MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHFPGDKPSNADNPASQPLDPGDIKRGQSPLPKQKMGEKQQNHRMPPVPTSEPNADGNSKMENKLIDLNMKPNNRIHEHASNNQVRVHGK*