Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190870 | XP_003597029.1 | 91.241 | 274 | 7 | 1 | 1 | 257 | 1 | 274 | 2.54e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190870 | sp|Q9LSX7|PEX22_ARATH | 61.957 | 276 | 69 | 4 | 14 | 257 | 11 | 282 | 3.13e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190870 | G7IKL0 | 91.241 | 274 | 7 | 1 | 1 | 257 | 1 | 274 | 1.21e-177 | 499 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0190870 | 0.830315 | 3.147891e-55 | -8.615850e-47 |
| Msa0017730 | Msa0190870 | 0.823492 | 1.345302e-53 | -8.615850e-47 |
| Msa0029630 | Msa0190870 | 0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0122530 | Msa0190870 | 0.803915 | 2.775267e-49 | -8.615850e-47 |
| Msa0147980 | Msa0190870 | 0.808095 | 3.664372e-50 | -8.615850e-47 |
| Msa0190870 | Msa0202490 | 0.812311 | 4.519828e-51 | -8.615850e-47 |
| Msa0190870 | Msa0215990 | 0.847088 | 1.442526e-59 | -8.615850e-47 |
| Msa0190870 | Msa0217670 | 0.848603 | 5.516428e-60 | -8.615850e-47 |
| Msa0190870 | Msa0230820 | 0.835371 | 1.744359e-56 | -8.615850e-47 |
| Msa0190870 | Msa0230890 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0190870 | Msa0237300 | 0.839769 | 1.299388e-57 | -8.615850e-47 |
| Msa0190870 | Msa0245580 | 0.803046 | 4.201903e-49 | -8.615850e-47 |
| Msa0190870 | Msa0256140 | 0.814189 | 1.749119e-51 | -8.615850e-47 |
| Msa0190870 | Msa0261010 | 0.910051 | 2.885598e-82 | -8.615850e-47 |
| Msa0190870 | Msa0274720 | 0.836580 | 8.608053e-57 | -8.615850e-47 |
| Msa0190870 | Msa0284180 | 0.827939 | 1.185620e-54 | -8.615850e-47 |
| Msa0190870 | Msa0288010 | -0.808094 | 3.666636e-50 | -8.615850e-47 |
| Msa0190870 | Msa0296790 | 0.805063 | 1.599844e-49 | -8.615850e-47 |
| Msa0190870 | Msa0315520 | 0.843717 | 1.180466e-58 | -8.615850e-47 |
| Msa0190870 | Msa0336450 | 0.961641 | 6.145757e-120 | -8.615850e-47 |
| Msa0190870 | Msa0336540 | 0.979055 | 3.894342e-147 | -8.615850e-47 |
| Msa0190870 | Msa0377820 | 0.862077 | 6.541946e-64 | -8.615850e-47 |
| Msa0190870 | Msa0385500 | 0.809833 | 1.556006e-50 | -8.615850e-47 |
| Msa0190870 | Msa0426580 | 0.873020 | 2.031034e-67 | -8.615850e-47 |
| Msa0190870 | Msa0439960 | 0.837383 | 5.370197e-57 | -8.615850e-47 |
| Msa0190870 | Msa0472930 | 0.860370 | 2.165293e-63 | -8.615850e-47 |
| Msa0190870 | Msa0517590 | 0.856986 | 2.219288e-62 | -8.615850e-47 |
| Msa0190870 | Msa0534980 | 0.810251 | 1.264581e-50 | -8.615850e-47 |
| Msa0190870 | Msa0549450 | 0.818540 | 1.858550e-52 | -8.615850e-47 |
| Msa0190870 | Msa0610250 | 0.814666 | 1.371732e-51 | -8.615850e-47 |
| Msa0190870 | Msa0622790 | 0.934998 | 1.689877e-96 | -8.615850e-47 |
| Msa0190870 | Msa0705010 | 0.805521 | 1.282467e-49 | -8.615850e-47 |
| Msa0190870 | Msa0752700 | 0.821777 | 3.371517e-53 | -8.615850e-47 |
| Msa0190870 | Msa0794970 | 0.802892 | 4.520676e-49 | -8.615850e-47 |
| Msa0190870 | Msa0831100 | 0.813325 | 2.710790e-51 | -8.615850e-47 |
| Msa0190870 | Msa0959520 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0190870 | Msa1123350 | 0.802695 | 4.966270e-49 | -8.615850e-47 |
| Msa0190870 | Msa1131680 | 0.801760 | 7.733171e-49 | -8.615850e-47 |
| Msa0190870 | Msa1133590 | 0.820507 | 6.612642e-53 | -8.615850e-47 |
| Msa0190870 | Msa1175350 | 0.804047 | 2.605031e-49 | -8.615850e-47 |
| Msa0190870 | Msa1206650 | 0.815797 | 7.690546e-52 | -8.615850e-47 |
| Msa0190870 | Msa1228040 | 0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa0190870 | Msa1233850 | 0.802185 | 6.326077e-49 | -8.615850e-47 |
| Msa0190870 | Msa1235460 | 0.820296 | 7.394496e-53 | -8.615850e-47 |
| Msa0190870 | Msa1292020 | 0.835732 | 1.414219e-56 | -8.615850e-47 |
| Msa0190870 | Msa1298100 | 0.802278 | 6.052756e-49 | -8.615850e-47 |
| Msa0190870 | Msa1373850 | 0.823631 | 1.248550e-53 | -8.615850e-47 |
| Msa0190870 | Msa1433700 | 0.833675 | 4.654224e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190870 | MtrunA17_Chr2g0322911 | 91.241 | 274 | 7 | 1 | 1 | 257 | 1 | 274 | 0.0 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190870 | AT3G21865.1 | 61.957 | 276 | 69 | 4 | 14 | 257 | 11 | 282 | 3.18e-103 | 301 |
Find 92 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAACTGGGTGACAATTTC+GGG | 0.202791 | 2_1:+6371633 | None:intergenic |
| TAATAGGATATTGGTAAAAT+TGG | 0.213521 | 2_1:-6376407 | Msa0190870:five_prime_UTR |
| CATATTATCATGTTTGTAAA+AGG | 0.226181 | 2_1:+6371059 | None:intergenic |
| TGTGTTCAGTGCTCCATCTT+TGG | 0.282234 | 2_1:-6371430 | Msa0190870:CDS |
| ATATCTCATGGACCGGGTTC+TGG | 0.282612 | 2_1:-6373545 | Msa0190870:CDS |
| AGCTAACTGGGTGACAATTT+CGG | 0.307177 | 2_1:+6371632 | None:intergenic |
| TTCATAAGTGTCTACTAGTT+TGG | 0.313088 | 2_1:-6371354 | Msa0190870:three_prime_UTR |
| TATAGTAACATACAGCTAAC+TGG | 0.320691 | 2_1:+6371619 | None:intergenic |
| GGACATACTCATAAAATAAT+AGG | 0.324038 | 2_1:-6376423 | None:intergenic |
| CTTTACCTTCAGATGAATTA+CGG | 0.325787 | 2_1:-6374993 | Msa0190870:CDS |
| CTCATAAAATAATAGGATAT+TGG | 0.335998 | 2_1:-6376416 | None:intergenic |
| AAGTAGTCCAGAGGAGCTTC+AGG | 0.337504 | 2_1:-6373720 | Msa0190870:intron |
| CACTTCAGGTGGTTTGGTTA+AGG | 0.348580 | 2_1:-6372679 | Msa0190870:CDS |
| TTTGGTTTGTGTCAGAATCT+TGG | 0.364462 | 2_1:-6371336 | Msa0190870:three_prime_UTR |
| CTCTGTGCTAGAAGTATTGT+TGG | 0.365848 | 2_1:-6373590 | Msa0190870:CDS |
| TAGGTAACCTGTCGTCTTCT+TGG | 0.368682 | 2_1:-6373758 | Msa0190870:CDS |
| GGTATTCACTTCAGGTGGTT+TGG | 0.370599 | 2_1:-6372685 | Msa0190870:CDS |
| TTTACCTTCAGATGAATTAC+GGG | 0.396554 | 2_1:-6374992 | Msa0190870:CDS |
| TGCCTCCCTTGTGTAGGATT+AGG | 0.402644 | 2_1:+6375096 | None:intergenic |
| CAAATTCCGGTGAGGCCTTA+CGG | 0.413571 | 2_1:-6376238 | Msa0190870:five_prime_UTR |
| TTTCACACCTGAAGCTCCTC+TGG | 0.413654 | 2_1:+6373713 | None:intergenic |
| GAAGCAGGGGTATTCACTTC+AGG | 0.423138 | 2_1:-6372693 | Msa0190870:CDS |
| TTTCACCTCATCAAACGCTT+TGG | 0.424379 | 2_1:-6376158 | Msa0190870:CDS |
| TCATCTGTCTCTAGAAAAGC+TGG | 0.427031 | 2_1:+6371286 | None:intergenic |
| GTGATTTATATCTCATGGAC+CGG | 0.427068 | 2_1:-6373552 | Msa0190870:CDS |
| CACAAGGGAGGCAACGGAAA+AGG | 0.435108 | 2_1:-6375086 | Msa0190870:CDS |
| TTCGTCAATTAGAACCAGAT+TGG | 0.438867 | 2_1:-6371671 | Msa0190870:CDS |
| ATAAAACATCATACCTTGAC+TGG | 0.444866 | 2_1:+6374940 | None:intergenic |
| GAGGTGAAAGAGGTCTTGTT+TGG | 0.449964 | 2_1:+6376172 | None:intergenic |
| GTAAAATTGGAAGAGAAACT+TGG | 0.450341 | 2_1:-6376394 | Msa0190870:five_prime_UTR |
| TGGTGAAACATGGCCGTGTC+TGG | 0.450786 | 2_1:-6376215 | Msa0190870:exon |
| TTTGAATTTGTGCTAGCTCC+AGG | 0.451708 | 2_1:+6375042 | None:intergenic |
| ATTCTGTGATTTATATCTCA+TGG | 0.455224 | 2_1:-6373557 | Msa0190870:CDS |
| CTTGTAGCGTTAGAAGAAGC+AGG | 0.455948 | 2_1:-6372708 | Msa0190870:CDS |
| CTCACTATCTGCCCCAAGGT+TGG | 0.469459 | 2_1:+6374788 | None:intergenic |
| CTTTGATGGGTTCTCACACT+AGG | 0.470411 | 2_1:-6371237 | Msa0190870:three_prime_UTR |
| GGTGGTGCATCTAGTAATCC+TGG | 0.473380 | 2_1:-6375060 | Msa0190870:CDS |
| TGATTGAATGATTAGGAACC+AGG | 0.485857 | 2_1:-6375935 | Msa0190870:intron |
| CTCATAGGCGCAGTTGTTGA+CGG | 0.487364 | 2_1:-6376352 | Msa0190870:five_prime_UTR |
| CTCTTCAGCAGCACTGAGAA+TGG | 0.490260 | 2_1:-6371708 | Msa0190870:CDS |
| GAAGTTGAGTGAAGGAAGAA+AGG | 0.490537 | 2_1:-6374762 | Msa0190870:intron |
| AACCTCTGACGACAGCTCAT+AGG | 0.502156 | 2_1:-6376367 | Msa0190870:five_prime_UTR |
| TTTGTGTCGATATGCCAATC+TGG | 0.503340 | 2_1:+6371657 | None:intergenic |
| GATGGGTTCTCACACTAGGT+TGG | 0.517754 | 2_1:-6371233 | Msa0190870:three_prime_UTR |
| GTGAAAGAGGTCTTGTTTGG+AGG | 0.521964 | 2_1:+6376175 | None:intergenic |
| CCAAAGAAAAGTTCCAAAGA+TGG | 0.522578 | 2_1:+6371417 | None:intergenic |
| TGTATTGTTTGTGTCTCCGT+TGG | 0.523086 | 2_1:+6376325 | None:intergenic |
| TAGAGACAGATGAGAAAACT+AGG | 0.523346 | 2_1:-6371276 | Msa0190870:three_prime_UTR |
| TGTGCCCGTAATTCATCTGA+AGG | 0.526195 | 2_1:+6374988 | None:intergenic |
| CGCCTATGAGCTGTCGTCAG+AGG | 0.532495 | 2_1:+6376365 | None:intergenic |
| AACAAGTATTGGTTGAAGGA+TGG | 0.534997 | 2_1:+6371014 | None:intergenic |
| TTCCGTTGCCTCCCTTGTGT+AGG | 0.536638 | 2_1:+6375090 | None:intergenic |
| TCATACACGTGCACAGAAGC+AGG | 0.536678 | 2_1:+6371203 | None:intergenic |
| GTGAGGCAGAAGTTGAGTGA+AGG | 0.552513 | 2_1:-6374770 | Msa0190870:CDS |
| GGCCTTACGGTGGTGAAACA+TGG | 0.555565 | 2_1:-6376225 | Msa0190870:exon |
| AGCGTTTGATGAGGTGAAAG+AGG | 0.557278 | 2_1:+6376162 | None:intergenic |
| ATCCTACACAAGGGAGGCAA+CGG | 0.560083 | 2_1:-6375092 | Msa0190870:CDS |
| CGCTTTCGTCATCCAGAACC+CGG | 0.561411 | 2_1:+6373533 | None:intergenic |
| AGGTGGTTTGGTTAAGGACA+AGG | 0.566844 | 2_1:-6372673 | Msa0190870:intron |
| GGGAGGCAACGGAAAAGGCA+AGG | 0.578364 | 2_1:-6375081 | Msa0190870:CDS |
| TCACCACCGTAAGGCCTCAC+CGG | 0.578554 | 2_1:+6376232 | None:intergenic |
| CAACCTTGGGGCAGATAGTG+AGG | 0.591229 | 2_1:-6374787 | Msa0190870:CDS |
| GGCCATGTTTCACCACCGTA+AGG | 0.591533 | 2_1:+6376223 | None:intergenic |
| ATCGTTGTCACCACCAGACA+CGG | 0.593071 | 2_1:+6376202 | None:intergenic |
| CTGCCTCACTATCTGCCCCA+AGG | 0.597162 | 2_1:+6374784 | None:intergenic |
| TGAGTTCTTTCAGCCAGTCA+AGG | 0.598134 | 2_1:-6374953 | Msa0190870:intron |
| TTGTAGCGTTAGAAGAAGCA+GGG | 0.599376 | 2_1:-6372707 | Msa0190870:CDS |
| GCAGGGGTATTCACTTCAGG+TGG | 0.601629 | 2_1:-6372690 | Msa0190870:CDS |
| TGATTTATATCTCATGGACC+GGG | 0.604687 | 2_1:-6373551 | Msa0190870:CDS |
| GATCACTCCAAGAAGACGAC+AGG | 0.606234 | 2_1:+6373751 | None:intergenic |
| TAGCACAAATTCAAATGCGT+CGG | 0.610167 | 2_1:-6375034 | Msa0190870:CDS |
| ATAGTAACATACAGCTAACT+GGG | 0.617813 | 2_1:+6371620 | None:intergenic |
| GAAGGTAAAGAAGCATCAGA+AGG | 0.624200 | 2_1:+6375006 | None:intergenic |
| AGTTGTTGACGGCAAACCAA+CGG | 0.625235 | 2_1:-6376341 | Msa0190870:five_prime_UTR |
| CCTCTGGACTACTTTCCTCA+AGG | 0.629211 | 2_1:+6373729 | None:intergenic |
| TGAAACATGGCCGTGTCTGG+TGG | 0.631096 | 2_1:-6376212 | Msa0190870:exon |
| TGGAGCACTGAACACATTAG+CGG | 0.631948 | 2_1:+6371437 | None:intergenic |
| CATCTGTCTCTAGAAAAGCT+GGG | 0.635551 | 2_1:+6371287 | None:intergenic |
| AAGCACCAAAGCGTTTGATG+AGG | 0.654478 | 2_1:+6376153 | None:intergenic |
| CCTTGAGGAAAGTAGTCCAG+AGG | 0.659450 | 2_1:-6373729 | Msa0190870:CDS |
| TCTTTGTTCAAATTCCGGTG+AGG | 0.659503 | 2_1:-6376246 | Msa0190870:five_prime_UTR |
| CTCCTAATCCTACACAAGGG+AGG | 0.662029 | 2_1:-6375098 | Msa0190870:CDS |
| AGATCTCCTAATCCTACACA+AGG | 0.662631 | 2_1:-6375102 | Msa0190870:CDS |
| AGGCAACGGAAAAGGCAAGG+TGG | 0.677448 | 2_1:-6375078 | Msa0190870:CDS |
| GGTTCTGGATGACGAAAGCG+AGG | 0.681958 | 2_1:-6373530 | Msa0190870:intron |
| TCTTCTTGGAGTGATCCTTG+AGG | 0.683304 | 2_1:-6373744 | Msa0190870:CDS |
| TGTAGCGTTAGAAGAAGCAG+GGG | 0.684444 | 2_1:-6372706 | Msa0190870:CDS |
| GATTGAATGATTAGGAACCA+GGG | 0.691614 | 2_1:-6375934 | Msa0190870:intron |
| CAACAATACTTCTAGCACAG+AGG | 0.703729 | 2_1:+6373591 | None:intergenic |
| AACATGATAATATGTCATCG+TGG | 0.720893 | 2_1:-6371050 | Msa0190870:three_prime_UTR |
| ATTCCGGTGAGGCCTTACGG+TGG | 0.729776 | 2_1:-6376235 | Msa0190870:five_prime_UTR |
| GATCTCCTAATCCTACACAA+GGG | 0.732816 | 2_1:-6375101 | Msa0190870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTAGAAATTTTAAA+TGG | - | chr2_1:6371531-6371550 | Msa0190870:intron | 10.0% |
| !!! | TTTTGTTAGAAATTTTAAAT+GGG | - | chr2_1:6371532-6371551 | Msa0190870:intron | 10.0% |
| !!! | TTAAATTTTTAATCTACTTA+AGG | - | chr2_1:6372818-6372837 | Msa0190870:intron | 10.0% |
| !!! | AAAATTTTTTTAACAAGTAT+TGG | + | chr2_1:6376406-6376425 | None:intergenic | 10.0% |
| !!! | TTTTTTTTGCTTTTAATGTT+GGG | - | chr2_1:6371555-6371574 | Msa0190870:intron | 15.0% |
| !! | AAGATAGACAATAAAAAAAT+GGG | + | chr2_1:6373423-6373442 | None:intergenic | 15.0% |
| !! | TAAGATAGACAATAAAAAAA+TGG | + | chr2_1:6373424-6373443 | None:intergenic | 15.0% |
| !! | TAATAGGATATTGGTAAAAT+TGG | - | chr2_1:6370999-6371018 | Msa0190870:three_prime_UTR | 20.0% |
| !! | ATCATTCAATCAACAATAAA+GGG | + | chr2_1:6371463-6371482 | None:intergenic | 20.0% |
| !! | AATCATTCAATCAACAATAA+AGG | + | chr2_1:6371464-6371483 | None:intergenic | 20.0% |
| !!! | TTATTGTTGATTGAATGATT+AGG | - | chr2_1:6371464-6371483 | Msa0190870:CDS | 20.0% |
| !!! | GTTTTTTTTGCTTTTAATGT+TGG | - | chr2_1:6371554-6371573 | Msa0190870:intron | 20.0% |
| !! | ACCTACTATGTATTTAAATA+AGG | - | chr2_1:6371647-6371666 | Msa0190870:CDS | 20.0% |
| !!! | ACCTTATTTAAATACATAGT+AGG | + | chr2_1:6371651-6371670 | None:intergenic | 20.0% |
| !! | CTATGTATTTAAATAAGGTA+TGG | - | chr2_1:6371652-6371671 | Msa0190870:CDS | 20.0% |
| !!! | AAATGATCAATGTAATGTTT+TGG | - | chr2_1:6371692-6371711 | Msa0190870:CDS | 20.0% |
| !!! | TAATGTTTTGGTCTTTTTTT+TGG | - | chr2_1:6371704-6371723 | Msa0190870:CDS | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | - | chr2_1:6372007-6372026 | Msa0190870:intron | 20.0% |
| !!! | ATGATATTGTACTTGTTATT+AGG | - | chr2_1:6372216-6372235 | Msa0190870:intron | 20.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | + | chr2_1:6372562-6372581 | None:intergenic | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | + | chr2_1:6372806-6372825 | None:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | + | chr2_1:6372870-6372889 | None:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | - | chr2_1:6373075-6373094 | Msa0190870:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | - | chr2_1:6373076-6373095 | Msa0190870:intron | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | - | chr2_1:6373137-6373156 | Msa0190870:intron | 20.0% |
| !! | TTATTGTCTATCTTAATAAG+TGG | - | chr2_1:6373429-6373448 | Msa0190870:intron | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | + | chr2_1:6373723-6373742 | None:intergenic | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | + | chr2_1:6374003-6374022 | None:intergenic | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | + | chr2_1:6374036-6374055 | None:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | + | chr2_1:6374097-6374116 | None:intergenic | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | + | chr2_1:6374098-6374117 | None:intergenic | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | + | chr2_1:6374170-6374189 | None:intergenic | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | - | chr2_1:6374367-6374386 | Msa0190870:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTT+AGG | - | chr2_1:6374399-6374418 | Msa0190870:intron | 20.0% |
| !!! | ATCATTCCTCTTTTTTTTTA+GGG | - | chr2_1:6374400-6374419 | Msa0190870:intron | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | - | chr2_1:6374653-6374672 | Msa0190870:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | + | chr2_1:6375043-6375062 | None:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | + | chr2_1:6375071-6375090 | None:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | - | chr2_1:6375285-6375304 | Msa0190870:intron | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | + | chr2_1:6375873-6375892 | None:intergenic | 20.0% |
| !!! | ATTCACAATTTTCAAACAAA+AGG | + | chr2_1:6376268-6376287 | None:intergenic | 20.0% |
| !! | CATATTATCATGTTTGTAAA+AGG | + | chr2_1:6376350-6376369 | None:intergenic | 20.0% |
| !! | TGTTTTCTTTGTTCAAATTC+CGG | - | chr2_1:6371155-6371174 | Msa0190870:three_prime_UTR | 25.0% |
| !!! | ACCTTTTTTCATCATTCTAT+TGG | - | chr2_1:6371327-6371346 | Msa0190870:three_prime_UTR | 25.0% |
| ! | TCCAATAGAATGATGAAAAA+AGG | + | chr2_1:6371331-6371350 | None:intergenic | 25.0% |
| ! | TGTTTCTTGTGATATATGAT+TGG | - | chr2_1:6371383-6371402 | Msa0190870:three_prime_UTR | 25.0% |
| ! | AAAACAAACTTTCACTCTTT+AGG | + | chr2_1:6371513-6371532 | None:intergenic | 25.0% |
| ! | AAATAAGGTATGGTTTAAGT+TGG | - | chr2_1:6371662-6371681 | Msa0190870:CDS | 25.0% |
| ! | GACTTGTAGATTATGTATTA+AGG | - | chr2_1:6371931-6371950 | Msa0190870:intron | 25.0% |
| !!! | GTTTCTCTTATAGTTTTTTC+AGG | + | chr2_1:6372003-6372022 | None:intergenic | 25.0% |
| ! | TGGTATATGATAGAACATTA+TGG | - | chr2_1:6372064-6372083 | Msa0190870:intron | 25.0% |
| ! | TATTAGGATATTCGTACTAT+TGG | - | chr2_1:6372232-6372251 | Msa0190870:intron | 25.0% |
| ! | ATTAGGATATTCGTACTATT+GGG | - | chr2_1:6372233-6372252 | Msa0190870:intron | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | + | chr2_1:6372507-6372526 | None:intergenic | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | + | chr2_1:6372720-6372739 | None:intergenic | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | - | chr2_1:6372774-6372793 | Msa0190870:intron | 25.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | - | chr2_1:6372837-6372856 | Msa0190870:intron | 25.0% |
| ! | TGTAAAATATGTAAACTTCG+TGG | + | chr2_1:6373049-6373068 | None:intergenic | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | - | chr2_1:6373077-6373096 | Msa0190870:intron | 25.0% |
| !! | TTTGTTTCTCTTTAGGTTAA+AGG | - | chr2_1:6373195-6373214 | Msa0190870:intron | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | + | chr2_1:6373360-6373379 | None:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | - | chr2_1:6373358-6373377 | Msa0190870:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | - | chr2_1:6373849-6373868 | Msa0190870:intron | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | + | chr2_1:6373918-6373937 | None:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | - | chr2_1:6374037-6374056 | Msa0190870:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | - | chr2_1:6374038-6374057 | Msa0190870:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | + | chr2_1:6374083-6374102 | None:intergenic | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | + | chr2_1:6374409-6374428 | None:intergenic | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | - | chr2_1:6374472-6374491 | Msa0190870:intron | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | + | chr2_1:6374776-6374795 | None:intergenic | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | - | chr2_1:6375209-6375228 | Msa0190870:intron | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | + | chr2_1:6375275-6375294 | None:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | + | chr2_1:6375341-6375360 | None:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | - | chr2_1:6375511-6375530 | Msa0190870:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | + | chr2_1:6375657-6375676 | None:intergenic | 25.0% |
| !!! | ATGTGATTAGTAGTGTTTTT+TGG | + | chr2_1:6376028-6376047 | None:intergenic | 25.0% |
| !!! | TTTTAACAAGTATTGGTTGA+AGG | + | chr2_1:6376399-6376418 | None:intergenic | 25.0% |
| GTAAAATTGGAAGAGAAACT+TGG | - | chr2_1:6371012-6371031 | Msa0190870:three_prime_UTR | 30.0% | |
| !!! | GCTTTTGTTACTTTCAAGAT+CGG | - | chr2_1:6371272-6371291 | Msa0190870:three_prime_UTR | 30.0% |
| ! | AAATGAGCTTTTATGTGTCA+TGG | - | chr2_1:6371597-6371616 | Msa0190870:intron | 30.0% |
| ! | TGTCATGGTTTTTGTCAAAT+TGG | - | chr2_1:6371612-6371631 | Msa0190870:intron | 30.0% |
| ! | GTCATGGTTTTTGTCAAATT+GGG | - | chr2_1:6371613-6371632 | Msa0190870:intron | 30.0% |
| ! | TCATGGTTTTTGTCAAATTG+GGG | - | chr2_1:6371614-6371633 | Msa0190870:intron | 30.0% |
| !!! | TTTTGGAGCATGTGTAAATA+AGG | - | chr2_1:6371721-6371740 | Msa0190870:intron | 30.0% |
| AACAACATTAAAGAGAGAGT+TGG | - | chr2_1:6371838-6371857 | Msa0190870:intron | 30.0% | |
| ACAACATTAAAGAGAGAGTT+GGG | - | chr2_1:6371839-6371858 | Msa0190870:intron | 30.0% | |
| ATTAAGGAGAGTAGATTAGA+TGG | - | chr2_1:6371947-6371966 | Msa0190870:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | - | chr2_1:6372032-6372051 | Msa0190870:intron | 30.0% | |
| ! | TAATGAGTTGGATCGAAATA+TGG | - | chr2_1:6372044-6372063 | Msa0190870:intron | 30.0% |
| AAGTACAATATCATGAGCTT+TGG | + | chr2_1:6372210-6372229 | None:intergenic | 30.0% | |
| TTAGGATATTCGTACTATTG+GGG | - | chr2_1:6372234-6372253 | Msa0190870:intron | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | - | chr2_1:6372413-6372432 | Msa0190870:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | - | chr2_1:6372414-6372433 | Msa0190870:intron | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | + | chr2_1:6372469-6372488 | None:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | + | chr2_1:6372499-6372518 | None:intergenic | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | + | chr2_1:6372500-6372519 | None:intergenic | 30.0% | |
| ! | GATCATAAGAAATGTCGATT+TGG | - | chr2_1:6372773-6372792 | Msa0190870:intron | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | + | chr2_1:6372803-6372822 | None:intergenic | 30.0% |
| CACACACTTCGTATTTATAA+TGG | + | chr2_1:6372994-6373013 | None:intergenic | 30.0% | |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | + | chr2_1:6373175-6373194 | None:intergenic | 30.0% |
| ! | AGCTATGTTTGTTTCTCTTT+AGG | - | chr2_1:6373188-6373207 | Msa0190870:intron | 30.0% |
| CAATATAGTTGCGTATAAAC+TGG | - | chr2_1:6373515-6373534 | Msa0190870:intron | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | + | chr2_1:6373623-6373642 | None:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | - | chr2_1:6373629-6373648 | Msa0190870:intron | 30.0% | |
| GTTACCTACATACAACTTAT+TGG | + | chr2_1:6373636-6373655 | None:intergenic | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | - | chr2_1:6373937-6373956 | Msa0190870:intron | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | - | chr2_1:6374044-6374063 | Msa0190870:intron | 30.0% | |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | + | chr2_1:6374343-6374362 | None:intergenic | 30.0% |
| TTCGAACTAAATTTGATCTC+AGG | - | chr2_1:6374579-6374598 | Msa0190870:intron | 30.0% | |
| !! | ATGGTGTCGTGTTATAATAT+TGG | + | chr2_1:6375322-6375341 | None:intergenic | 30.0% |
| AATATTATAACACGACACCA+TGG | - | chr2_1:6375321-6375340 | Msa0190870:intron | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | - | chr2_1:6375335-6375354 | Msa0190870:intron | 30.0% | |
| GTATAAAAAAAGTAGTGCAC+AGG | + | chr2_1:6375364-6375383 | None:intergenic | 30.0% | |
| !!! | GTGCACTACTTTTTTTATAC+TGG | - | chr2_1:6375364-6375383 | Msa0190870:intron | 30.0% |
| AAACATAAGTATGCAGCAAT+CGG | + | chr2_1:6375626-6375645 | None:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | + | chr2_1:6375789-6375808 | None:intergenic | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | + | chr2_1:6375790-6375809 | None:intergenic | 30.0% | |
| TTCATAAGTGTCTACTAGTT+TGG | - | chr2_1:6376052-6376071 | Msa0190870:intron | 30.0% | |
| AAAAGCTGGGAAAAAATGTA+TGG | + | chr2_1:6376109-6376128 | None:intergenic | 30.0% | |
| !! | AGATTTTCTTCAAGCTTTGA+TGG | - | chr2_1:6376155-6376174 | Msa0190870:CDS | 30.0% |
| !! | GATTTTCTTCAAGCTTTGAT+GGG | - | chr2_1:6376156-6376175 | Msa0190870:CDS | 30.0% |
| AACATGATAATATGTCATCG+TGG | - | chr2_1:6376356-6376375 | Msa0190870:five_prime_UTR | 30.0% | |
| ATGAAAAAAGGTAGAGAGAG+AGG | + | chr2_1:6371319-6371338 | None:intergenic | 35.0% | |
| TGATTGAATGATTAGGAACC+AGG | - | chr2_1:6371471-6371490 | Msa0190870:CDS | 35.0% | |
| GATTGAATGATTAGGAACCA+GGG | - | chr2_1:6371472-6371491 | Msa0190870:CDS | 35.0% | |
| !! | TTTGCTTTTAATGTTGGGTG+TGG | - | chr2_1:6371560-6371579 | Msa0190870:intron | 35.0% |
| !! | TTGCTTTTAATGTTGGGTGT+GGG | - | chr2_1:6371561-6371580 | Msa0190870:intron | 35.0% |
| CAACATTAAAGAGAGAGTTG+GGG | - | chr2_1:6371840-6371859 | Msa0190870:intron | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | - | chr2_1:6372372-6372391 | Msa0190870:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | + | chr2_1:6372533-6372552 | None:intergenic | 35.0% | |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | - | chr2_1:6372605-6372624 | Msa0190870:intron | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | - | chr2_1:6372606-6372625 | Msa0190870:intron | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | - | chr2_1:6372607-6372626 | Msa0190870:intron | 35.0% |
| ATGCACTCTTTATGTAGTAG+TGG | - | chr2_1:6372686-6372705 | Msa0190870:CDS | 35.0% | |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | - | chr2_1:6372712-6372731 | Msa0190870:CDS | 35.0% |
| ! | AGGAGATGGTAATTTCTAGA+AGG | + | chr2_1:6372751-6372770 | None:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | + | chr2_1:6372946-6372965 | None:intergenic | 35.0% |
| ATTGGTTAAGCAGCTAAAAG+AGG | - | chr2_1:6373275-6373294 | Msa0190870:intron | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | - | chr2_1:6373519-6373538 | Msa0190870:intron | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | - | chr2_1:6373520-6373539 | Msa0190870:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | - | chr2_1:6373601-6373620 | Msa0190870:CDS | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | + | chr2_1:6373622-6373641 | None:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | - | chr2_1:6373854-6373873 | Msa0190870:intron | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | - | chr2_1:6373855-6373874 | Msa0190870:intron | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | + | chr2_1:6374894-6374913 | None:intergenic | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | - | chr2_1:6374976-6374995 | Msa0190870:CDS | 35.0% | |
| AATGGCAAAAGATGTTTCTC+AGG | + | chr2_1:6375025-6375044 | None:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | + | chr2_1:6375058-6375077 | None:intergenic | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | - | chr2_1:6375159-6375178 | Msa0190870:intron | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | - | chr2_1:6375160-6375179 | Msa0190870:intron | 35.0% | |
| ! | ATATGTTTGTTGCCATTTGC+TGG | - | chr2_1:6375416-6375435 | Msa0190870:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | + | chr2_1:6375466-6375485 | None:intergenic | 35.0% |
| TGACAAGATATAACTCTTGC+AGG | + | chr2_1:6375489-6375508 | None:intergenic | 35.0% | |
| ! | GCTACAGATCACAATTTTGT+CGG | + | chr2_1:6375548-6375567 | None:intergenic | 35.0% |
| GGTATGGGATATCAAAATAG+AGG | + | chr2_1:6375666-6375685 | None:intergenic | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | - | chr2_1:6375735-6375754 | Msa0190870:intron | 35.0% | |
| AACAACAAATCATGTTGCAG+AGG | - | chr2_1:6375897-6375916 | Msa0190870:intron | 35.0% | |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | + | chr2_1:6375950-6375969 | None:intergenic | 35.0% |
| CCAAAGAAAAGTTCCAAAGA+TGG | + | chr2_1:6375992-6376011 | None:intergenic | 35.0% | |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | - | chr2_1:6375989-6376008 | Msa0190870:intron | 35.0% |
| !!! | AGTGTTTTTTGGTTCTCATG+TGG | + | chr2_1:6376017-6376036 | None:intergenic | 35.0% |
| !! | TTTGGTTTGTGTCAGAATCT+TGG | - | chr2_1:6376070-6376089 | Msa0190870:intron | 35.0% |
| GGGAAAAAATGTATGGTGAA+AGG | + | chr2_1:6376102-6376121 | None:intergenic | 35.0% | |
| TAGAGACAGATGAGAAAACT+AGG | - | chr2_1:6376130-6376149 | Msa0190870:CDS | 35.0% | |
| ! | TCAGACATTTTGAACTGACA+AGG | - | chr2_1:6376293-6376312 | Msa0190870:five_prime_UTR | 35.0% |
| !! | AACAAGTATTGGTTGAAGGA+TGG | + | chr2_1:6376395-6376414 | None:intergenic | 35.0% |
| TGTATTGTTTGTGTCTCCGT+TGG | + | chr2_1:6371084-6371103 | None:intergenic | 40.0% | |
| TCTTTGTTCAAATTCCGGTG+AGG | - | chr2_1:6371160-6371179 | Msa0190870:three_prime_UTR | 40.0% | |
| TTTCACCTCATCAAACGCTT+TGG | - | chr2_1:6371248-6371267 | Msa0190870:three_prime_UTR | 40.0% | |
| TTTGGGCATATATTGCAGAG+AGG | - | chr2_1:6371907-6371926 | Msa0190870:intron | 40.0% | |
| TGGAATAGTCAGATCACTAG+TGG | - | chr2_1:6371967-6371986 | Msa0190870:intron | 40.0% | |
| !! | ACTAAGTGGGATTAGCTACA+TGG | + | chr2_1:6372101-6372120 | None:intergenic | 40.0% |
| ATGTAGCTAATCCCACTTAG+TGG | - | chr2_1:6372100-6372119 | Msa0190870:intron | 40.0% | |
| TGTAGCTAATCCCACTTAGT+GGG | - | chr2_1:6372101-6372120 | Msa0190870:intron | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | - | chr2_1:6372107-6372126 | Msa0190870:intron | 40.0% | |
| ! | CTGTTGCGATTGTTTTCACT+TGG | - | chr2_1:6372272-6372291 | Msa0190870:intron | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | - | chr2_1:6372275-6372294 | Msa0190870:intron | 40.0% |
| AGATCTCCTAATCCTACACA+AGG | - | chr2_1:6372304-6372323 | Msa0190870:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | - | chr2_1:6372305-6372324 | Msa0190870:intron | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | + | chr2_1:6372367-6372386 | None:intergenic | 40.0% | |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | + | chr2_1:6372403-6372422 | None:intergenic | 40.0% |
| AGCCAATGCATGAATGTTTG+TGG | - | chr2_1:6372528-6372547 | Msa0190870:intron | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | - | chr2_1:6372644-6372663 | Msa0190870:intron | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | + | chr2_1:6372765-6372784 | None:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | + | chr2_1:6372771-6372790 | None:intergenic | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | + | chr2_1:6372929-6372948 | None:intergenic | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | - | chr2_1:6372926-6372945 | Msa0190870:intron | 40.0% | |
| ! | TGGGAATACTTGATGACATG+AGG | - | chr2_1:6373539-6373558 | Msa0190870:CDS | 40.0% |
| TCATAATAGCCGGGAAACAT+AGG | + | chr2_1:6373613-6373632 | None:intergenic | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | + | chr2_1:6373818-6373837 | None:intergenic | 40.0% | |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | - | chr2_1:6373816-6373835 | Msa0190870:intron | 40.0% |
| CAGTATGTGTGTTCCAAACT+AGG | + | chr2_1:6374488-6374507 | None:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | + | chr2_1:6374605-6374624 | None:intergenic | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | - | chr2_1:6374699-6374718 | Msa0190870:intron | 40.0% | |
| AAGTTAACCACCTTCTTGCT+GGG | - | chr2_1:6374802-6374821 | Msa0190870:intron | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | + | chr2_1:6375225-6375244 | None:intergenic | 40.0% |
| CCATGCAAGGACAATGTAAA+AGG | - | chr2_1:6375222-6375241 | Msa0190870:intron | 40.0% | |
| !! | TGCTCTTTTCAAGACATCCT+TGG | - | chr2_1:6375446-6375465 | Msa0190870:intron | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | + | chr2_1:6375474-6375493 | None:intergenic | 40.0% |
| GATATCCCATACCTATATGC+AGG | - | chr2_1:6375673-6375692 | Msa0190870:intron | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | + | chr2_1:6375681-6375700 | None:intergenic | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | + | chr2_1:6375682-6375701 | None:intergenic | 40.0% | |
| ! | TTTGTGTCGATATGCCAATC+TGG | + | chr2_1:6375752-6375771 | None:intergenic | 40.0% |
| AGCTAACTGGGTGACAATTT+CGG | + | chr2_1:6375777-6375796 | None:intergenic | 40.0% | |
| !! | CTGTTTTATAAGGCGCTATG+TGG | + | chr2_1:6375940-6375959 | None:intergenic | 40.0% |
| ! | CATCTGTCTCTAGAAAAGCT+GGG | + | chr2_1:6376122-6376141 | None:intergenic | 40.0% |
| ! | TCATCTGTCTCTAGAAAAGC+TGG | + | chr2_1:6376123-6376142 | None:intergenic | 40.0% |
| AGTTGTTGACGGCAAACCAA+CGG | - | chr2_1:6371065-6371084 | Msa0190870:three_prime_UTR | 45.0% | |
| !! | GTGAAAGAGGTCTTGTTTGG+AGG | + | chr2_1:6371234-6371253 | None:intergenic | 45.0% |
| !! | GAGGTGAAAGAGGTCTTGTT+TGG | + | chr2_1:6371237-6371256 | None:intergenic | 45.0% |
| AGCGTTTGATGAGGTGAAAG+AGG | + | chr2_1:6371247-6371266 | None:intergenic | 45.0% | |
| ! | AAGCACCAAAGCGTTTGATG+AGG | + | chr2_1:6371256-6371275 | None:intergenic | 45.0% |
| GAATGATTAGGAACCAGGGT+TGG | - | chr2_1:6371476-6371495 | Msa0190870:CDS | 45.0% | |
| GGTTGTTAAGTATCCAACCC+TGG | + | chr2_1:6371492-6371511 | None:intergenic | 45.0% | |
| AGCACCAATGGGAGAAAAGA+TGG | - | chr2_1:6371864-6371883 | Msa0190870:intron | 45.0% | |
| ACCAATGGGAGAAAAGATGG+TGG | - | chr2_1:6371867-6371886 | Msa0190870:intron | 45.0% | |
| ! | TCCACCATCTTTTCTCCCAT+TGG | + | chr2_1:6371871-6371890 | None:intergenic | 45.0% |
| AGTCAGATCACTAGTGGTAG+AGG | - | chr2_1:6371973-6371992 | Msa0190870:intron | 45.0% | |
| ! | AGAGCCTTATCCCACTAAGT+GGG | + | chr2_1:6372114-6372133 | None:intergenic | 45.0% |
| TTAGTGGGATAAGGCTCTCT+TGG | - | chr2_1:6372116-6372135 | Msa0190870:intron | 45.0% | |
| GGATATTCGTACTATTGGGG+CGG | - | chr2_1:6372237-6372256 | Msa0190870:intron | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | + | chr2_1:6372421-6372440 | None:intergenic | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | - | chr2_1:6372453-6372472 | Msa0190870:intron | 45.0% | |
| TAGGTAACCTGTCGTCTTCT+TGG | - | chr2_1:6373648-6373667 | Msa0190870:intron | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | - | chr2_1:6373662-6373681 | Msa0190870:intron | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | + | chr2_1:6374614-6374633 | None:intergenic | 45.0% | |
| CTTGTAGCGTTAGAAGAAGC+AGG | - | chr2_1:6374698-6374717 | Msa0190870:intron | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | - | chr2_1:6374700-6374719 | Msa0190870:intron | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | - | chr2_1:6374721-6374740 | Msa0190870:intron | 45.0% | |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | - | chr2_1:6374727-6374746 | Msa0190870:intron | 45.0% |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | - | chr2_1:6374733-6374752 | Msa0190870:intron | 45.0% |
| GAAGTTAACCACCTTCTTGC+TGG | - | chr2_1:6374801-6374820 | Msa0190870:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | + | chr2_1:6375431-6375450 | None:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | + | chr2_1:6375687-6375706 | None:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | + | chr2_1:6375776-6375795 | None:intergenic | 45.0% | |
| !! | TGGAGCACTGAACACATTAG+CGG | + | chr2_1:6375972-6375991 | None:intergenic | 45.0% |
| TGTGTTCAGTGCTCCATCTT+TGG | - | chr2_1:6375976-6375995 | Msa0190870:intron | 45.0% | |
| !! | CTTTGATGGGTTCTCACACT+AGG | - | chr2_1:6376169-6376188 | Msa0190870:CDS | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | - | chr2_1:6373226-6373245 | Msa0190870:intron | 5.0% |
| AACCTCTGACGACAGCTCAT+AGG | - | chr2_1:6371039-6371058 | Msa0190870:three_prime_UTR | 50.0% | |
| CTCATAGGCGCAGTTGTTGA+CGG | - | chr2_1:6371054-6371073 | Msa0190870:three_prime_UTR | 50.0% | |
| CAAATTCCGGTGAGGCCTTA+CGG | - | chr2_1:6371168-6371187 | Msa0190870:three_prime_UTR | 50.0% | |
| ATCGTTGTCACCACCAGACA+CGG | + | chr2_1:6371207-6371226 | None:intergenic | 50.0% | |
| GTTGGGTGTGGGTAGAAACT+AGG | - | chr2_1:6371572-6371591 | Msa0190870:intron | 50.0% | |
| AGAGTTGGGGTAGCACCAAT+GGG | - | chr2_1:6371853-6371872 | Msa0190870:intron | 50.0% | |
| !! | GAGAAAAGATGGTGGAGACC+AGG | - | chr2_1:6371875-6371894 | Msa0190870:intron | 50.0% |
| AGACCAGGCTTAGGTGGTTT+GGG | - | chr2_1:6371890-6371909 | Msa0190870:intron | 50.0% | |
| ! | GAGAGCCTTATCCCACTAAG+TGG | + | chr2_1:6372115-6372134 | None:intergenic | 50.0% |
| CTCCTAATCCTACACAAGGG+AGG | - | chr2_1:6372308-6372327 | Msa0190870:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | + | chr2_1:6372313-6372332 | None:intergenic | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | - | chr2_1:6372314-6372333 | Msa0190870:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | - | chr2_1:6372346-6372365 | Msa0190870:intron | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | - | chr2_1:6372636-6372655 | Msa0190870:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | - | chr2_1:6373249-6373268 | Msa0190870:intron | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | + | chr2_1:6373271-6373290 | None:intergenic | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | - | chr2_1:6373379-6373398 | Msa0190870:intron | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | - | chr2_1:6373380-6373399 | Msa0190870:intron | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | - | chr2_1:6373381-6373400 | Msa0190870:intron | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | + | chr2_1:6373658-6373677 | None:intergenic | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | + | chr2_1:6373680-6373699 | None:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | - | chr2_1:6373677-6373696 | Msa0190870:intron | 50.0% | |
| AAGTAGTCCAGAGGAGCTTC+AGG | - | chr2_1:6373686-6373705 | Msa0190870:intron | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | + | chr2_1:6373696-6373715 | None:intergenic | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | - | chr2_1:6373861-6373880 | Msa0190870:intron | 50.0% | |
| !! | GAAGCAGGGGTATTCACTTC+AGG | - | chr2_1:6374713-6374732 | Msa0190870:intron | 50.0% |
| AACCGTCATCATGACTAGGG+AGG | - | chr2_1:6375163-6375182 | Msa0190870:intron | 50.0% | |
| ACCGTCATCATGACTAGGGA+GGG | - | chr2_1:6375164-6375183 | Msa0190870:intron | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | - | chr2_1:6375698-6375717 | Msa0190870:intron | 50.0% |
| ! | GATGGGTTCTCACACTAGGT+TGG | - | chr2_1:6376173-6376192 | Msa0190870:CDS | 50.0% |
| TCATACACGTGCACAGAAGC+AGG | + | chr2_1:6376206-6376225 | None:intergenic | 50.0% | |
| GGCCTTACGGTGGTGAAACA+TGG | - | chr2_1:6371181-6371200 | Msa0190870:three_prime_UTR | 55.0% | |
| GGCCATGTTTCACCACCGTA+AGG | + | chr2_1:6371186-6371205 | None:intergenic | 55.0% | |
| TGGTGAAACATGGCCGTGTC+TGG | - | chr2_1:6371191-6371210 | Msa0190870:three_prime_UTR | 55.0% | |
| TGAAACATGGCCGTGTCTGG+TGG | - | chr2_1:6371194-6371213 | Msa0190870:three_prime_UTR | 55.0% | |
| GAGAGTTGGGGTAGCACCAA+TGG | - | chr2_1:6371852-6371871 | Msa0190870:intron | 55.0% | |
| !! | AGATGGTGGAGACCAGGCTT+AGG | - | chr2_1:6371881-6371900 | Msa0190870:intron | 55.0% |
| GAGACCAGGCTTAGGTGGTT+TGG | - | chr2_1:6371889-6371908 | Msa0190870:intron | 55.0% | |
| ATGCCCAAACCACCTAAGCC+TGG | + | chr2_1:6371896-6371915 | None:intergenic | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | + | chr2_1:6372319-6372338 | None:intergenic | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | - | chr2_1:6372320-6372339 | Msa0190870:intron | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | - | chr2_1:6372328-6372347 | Msa0190870:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | + | chr2_1:6372621-6372640 | None:intergenic | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | - | chr2_1:6372619-6372638 | Msa0190870:intron | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | - | chr2_1:6373250-6373269 | Msa0190870:intron | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr2_1:6373251-6373270 | Msa0190870:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | + | chr2_1:6373270-6373289 | None:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | - | chr2_1:6373382-6373401 | Msa0190870:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | + | chr2_1:6373400-6373419 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | + | chr2_1:6373401-6373420 | None:intergenic | 55.0% |
| CGCTTTCGTCATCCAGAACC+CGG | + | chr2_1:6373876-6373895 | None:intergenic | 55.0% | |
| !! | GGTTCTGGATGACGAAAGCG+AGG | - | chr2_1:6373876-6373895 | Msa0190870:intron | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | - | chr2_1:6374716-6374735 | Msa0190870:intron | 55.0% |
| AACACTGCCCAGCAAGAAGG+TGG | + | chr2_1:6374812-6374831 | None:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | + | chr2_1:6374815-6374834 | None:intergenic | 55.0% | |
| CCCCTCCCTAGTCATGATGA+CGG | + | chr2_1:6375168-6375187 | None:intergenic | 55.0% | |
| CCGTCATCATGACTAGGGAG+GGG | - | chr2_1:6375165-6375184 | Msa0190870:intron | 55.0% | |
| CGCCTATGAGCTGTCGTCAG+AGG | + | chr2_1:6371044-6371063 | None:intergenic | 60.0% | |
| ATTCCGGTGAGGCCTTACGG+TGG | - | chr2_1:6371171-6371190 | Msa0190870:three_prime_UTR | 60.0% | |
| TCACCACCGTAAGGCCTCAC+CGG | + | chr2_1:6371177-6371196 | None:intergenic | 60.0% | |
| TGGTGGAGACCAGGCTTAGG+TGG | - | chr2_1:6371884-6371903 | Msa0190870:intron | 60.0% | |
| CGTACTATTGGGGCGGTAGC+TGG | - | chr2_1:6372244-6372263 | Msa0190870:intron | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | - | chr2_1:6372325-6372344 | Msa0190870:intron | 60.0% | |
| CTGCCTCACTATCTGCCCCA+AGG | + | chr2_1:6372625-6372644 | None:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | + | chr2_1:6373268-6373287 | None:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | + | chr2_1:6373269-6373288 | None:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | + | chr2_1:6373399-6373418 | None:intergenic | 60.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | + | chr2_1:6373387-6373406 | None:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | - | chr2_1:6373257-6373276 | Msa0190870:intron | 70.0% | |
| ! | AACCAATGCCCCGGGGGCAC+TGG | + | chr2_1:6373262-6373281 | None:intergenic | 70.0% |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | - | chr2_1:6373388-6373407 | Msa0190870:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 6370996 | 6376432 | 6370996 | ID=Msa0190870;Name=Msa0190870 |
| chr2_1 | mRNA | 6370996 | 6376432 | 6370996 | ID=Msa0190870-mRNA-1;Parent=Msa0190870;Name=Msa0190870-mRNA-1;_AED=0.10;_eAED=0.10;_QI=204|0.75|0.77|0.88|0.75|0.77|9|411|258 |
| chr2_1 | exon | 6370996 | 6371511 | 6370996 | ID=Msa0190870-mRNA-1:exon:2882;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6371632 | 6371733 | 6371632 | ID=Msa0190870-mRNA-1:exon:2881;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6372674 | 6372739 | 6372674 | ID=Msa0190870-mRNA-1:exon:2880;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6373531 | 6373632 | 6373531 | ID=Msa0190870-mRNA-1:exon:2879;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6373721 | 6373777 | 6373721 | ID=Msa0190870-mRNA-1:exon:2878;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6374763 | 6374810 | 6374763 | ID=Msa0190870-mRNA-1:exon:2877;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6374954 | 6375131 | 6374954 | ID=Msa0190870-mRNA-1:exon:2876;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6375935 | 6375942 | 6375935 | ID=Msa0190870-mRNA-1:exon:2875;Parent=Msa0190870-mRNA-1 |
| chr2_1 | exon | 6376118 | 6376432 | 6376118 | ID=Msa0190870-mRNA-1:exon:2874;Parent=Msa0190870-mRNA-1 |
| chr2_1 | five_prime_UTR | 6376229 | 6376432 | 6376229 | ID=Msa0190870-mRNA-1:five_prime_utr;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6376118 | 6376228 | 6376118 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6375935 | 6375942 | 6375935 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6374954 | 6375131 | 6374954 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6374763 | 6374810 | 6374763 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6373721 | 6373777 | 6373721 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6373531 | 6373632 | 6373531 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6372674 | 6372739 | 6372674 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6371632 | 6371733 | 6371632 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | CDS | 6371407 | 6371511 | 6371407 | ID=Msa0190870-mRNA-1:cds;Parent=Msa0190870-mRNA-1 |
| chr2_1 | three_prime_UTR | 6370996 | 6371406 | 6370996 | ID=Msa0190870-mRNA-1:three_prime_utr;Parent=Msa0190870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
