AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092480 MtrunA17_Chr4g0019821 76.744 258 17 3 1 216 1 257 6.47e-119 338
Msa0092480 MtrunA17_Chr4g0068561 40.994 161 64 2 79 210 34 192 4.91e-33 117
Msa0092480 MtrunA17_Chr4g0039621 40.506 158 65 1 87 215 648 805 4.67e-30 117
Msa0092480 MtrunA17_Chr3g0128701 35.220 159 72 3 76 203 218 376 7.04e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092480 AT3G59980.1 54.455 202 47 3 59 216 73 273 1.99e-64 201
Msa0092480 AT4G13780.1 37.349 166 75 1 79 215 631 796 3.77e-25 103
Msa0092480 AT2G40660.1 43.023 86 49 0 86 171 231 316 1.29e-16 77.8

Find 40 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTGAGAGAAAAGGGAATT+TGG 0.204168 1_2:-74964622 None:intergenic
TCACGCCCCAAAACCCTATC+TGG 0.209394 1_2:+74964657 Msa0092480:CDS
CTGCTGGGTTGCTTGATATA+AGG 0.220534 1_2:+74964772 Msa0092480:CDS
TTTGGGTAGGAATGAGTAAT+TGG 0.260789 1_2:-74964604 None:intergenic
GAAGAAGAAAGAGTGCAAAA+TGG 0.289404 1_2:-74964687 None:intergenic
TGTCCCTCTTGAACAACTTC+AGG 0.318121 1_2:+74964908 Msa0092480:CDS
AGACCACTGCAAATAATTCT+AGG 0.337017 1_2:-74964876 None:intergenic
AGAGAACCCAGATAGGGTTT+TGG 0.349454 1_2:-74964664 None:intergenic
AGTGAGAGAAAAGGGAATTT+GGG 0.353893 1_2:-74964621 None:intergenic
TGCTGGGTTGCTTGATATAA+GGG 0.359660 1_2:+74964773 Msa0092480:CDS
ATGCGTGGCGTCAAGTCTTC+AGG 0.362081 1_2:+74967223 Msa0092480:CDS
AAGAAGAGAGTGAGAGAAAA+GGG 0.367952 1_2:-74964629 None:intergenic
GAAGAAGAGAGTGAGAGAAA+AGG 0.375038 1_2:-74964630 None:intergenic
TATGTTGAAGAGGTTGATAT+TGG 0.447688 1_2:+74964843 Msa0092480:CDS
CAAGTCTTCAGGAATGTTGA+TGG 0.466166 1_2:+74967234 Msa0092480:CDS
CTGCAAATAATTCTAGGTTC+AGG 0.473329 1_2:-74964870 None:intergenic
AGTAGTATTAAAGATACTGC+TGG 0.483323 1_2:+74964756 Msa0092480:intron
TTGACGCCACGCATATTCCT+TGG 0.486119 1_2:-74967214 None:intergenic
CATGTTATGCGTACATCTGC+AGG 0.488090 1_2:+74968896 Msa0092480:CDS
AAAATGGAGAGAACCCAGAT+AGG 0.491884 1_2:-74964671 None:intergenic
TGAATCACTTTATGTTGAAG+AGG 0.510641 1_2:+74964833 Msa0092480:CDS
TTCTTTCGAATCTGAAGCCA+AGG 0.511951 1_2:+74967197 Msa0092480:CDS
TATTTGCATTCTGCAAAGAC+TGG 0.514661 1_2:-74968931 None:intergenic
AAATGGAGAGAACCCAGATA+GGG 0.556896 1_2:-74964670 None:intergenic
CAGCCTCATCTTAAAACAGA+TGG 0.557780 1_2:+74968848 Msa0092480:CDS
TTGGTCAGATTGTGAAAGCA+TGG 0.562162 1_2:+74964796 Msa0092480:CDS
TTCTTCTTCTGAGACAGTCA+CGG 0.562195 1_2:+74964704 Msa0092480:CDS
AAAATGGCAAATGTATTGAA+AGG 0.563636 1_2:+74964513 None:intergenic
CACGCCCCAAAACCCTATCT+GGG 0.569575 1_2:+74964658 Msa0092480:CDS
AGAGAAAAGGGAATTTGGGT+AGG 0.575873 1_2:-74964617 None:intergenic
GGTTCTTGTACTGCGATGCT+AGG 0.576090 1_2:+74968869 Msa0092480:CDS
GAAACCTGAAGTTGTTCAAG+AGG 0.586172 1_2:-74964912 None:intergenic
GTAGTATTAAAGATACTGCT+GGG 0.595902 1_2:+74964757 Msa0092480:intron
GAACCTAGAATTATTTGCAG+TGG 0.609307 1_2:+74964873 Msa0092480:CDS
CGTTGTTCGTGAGAGTGTTG+TGG 0.624714 1_2:-74964580 None:intergenic
ATGGCAAATGTATTGAAAGG+TGG 0.625147 1_2:+74964516 Msa0092480:CDS
GGGTTGCTTGATATAAGGGT+TGG 0.626322 1_2:+74964777 Msa0092480:CDS
AAACCTGAAGTTGTTCAAGA+GGG 0.658505 1_2:-74964911 None:intergenic
CTGAAGCCAAGGAATATGCG+TGG 0.688927 1_2:+74967208 Msa0092480:CDS
TGTTCGTGAGAGTGTTGTGG+TGG 0.704660 1_2:-74964577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTATGAATTTTTTT+TGG + chr1_2:74964938-74964957 Msa0092480:intron 10.0%
!!! ATTGAAATTATGTTTTTTAT+TGG + chr1_2:74964967-74964986 Msa0092480:intron 10.0%
!!! AAAATATCTTTTACTAATAT+CGG + chr1_2:74966393-74966412 Msa0092480:intron 10.0%
!!! ATTTTTATTAAATAACATGT+TGG - chr1_2:74966721-74966740 None:intergenic 10.0%
!!! AATACTAATAAATTTGTTTA+AGG + chr1_2:74966891-74966910 Msa0092480:intron 10.0%
!!! AAAAAGAATTTTTAATTTGA+CGG - chr1_2:74967454-74967473 None:intergenic 10.0%
!! GTATATAAAAATATTCAATG+CGG - chr1_2:74965642-74965661 None:intergenic 15.0%
!!! ATATTTTTATATACTTGATG+TGG + chr1_2:74965648-74965667 Msa0092480:intron 15.0%
!!! TATTTTTATATACTTGATGT+GGG + chr1_2:74965649-74965668 Msa0092480:intron 15.0%
!! ATATATGAGGTATATTTAAA+GGG - chr1_2:74965752-74965771 None:intergenic 15.0%
!! TAAACATAAATTTAGAAATG+AGG - chr1_2:74966756-74966775 None:intergenic 15.0%
!!! TCTTTTTATTTAAATTATCC+AGG - chr1_2:74966871-74966890 None:intergenic 15.0%
!!! GATTTTCTTTCAAAAAAAAA+AGG - chr1_2:74967805-74967824 None:intergenic 15.0%
!! AAAGAATATTAAGTTACAAA+TGG - chr1_2:74968783-74968802 None:intergenic 15.0%
!! TTCAATATGGAATTTAATTG+TGG + chr1_2:74965005-74965024 Msa0092480:intron 20.0%
!! AAATTCTCCAAAATAGTTTA+TGG - chr1_2:74965194-74965213 None:intergenic 20.0%
!! CATATATGAGGTATATTTAA+AGG - chr1_2:74965753-74965772 None:intergenic 20.0%
!! ATTGCAAAACTAAATTTCAA+AGG + chr1_2:74966154-74966173 Msa0092480:intron 20.0%
!!! TTTTATAAAAACAGTATCGA+AGG - chr1_2:74966377-74966396 None:intergenic 20.0%
!!! TTGTTTTAATTGAAGATTTG+TGG + chr1_2:74966432-74966451 Msa0092480:intron 20.0%
!! ACAGTTCAAATATTAAAGTT+TGG - chr1_2:74966651-74966670 None:intergenic 20.0%
!! TAAGCATACAACAAATATTA+AGG - chr1_2:74966786-74966805 None:intergenic 20.0%
!! ATGAAAAATTAACCATGAAT+AGG - chr1_2:74966980-74966999 None:intergenic 20.0%
!!! TAATTTTTCATATGCAAAAC+TGG + chr1_2:74966989-74967008 Msa0092480:intron 20.0%
!! ATTAAAATGTAAGTTCTATG+AGG + chr1_2:74967056-74967075 Msa0092480:intron 20.0%
!! ATTAATTGCAAAACATAAAG+TGG - chr1_2:74967085-74967104 None:intergenic 20.0%
!!! TGCAATTAATATATTTGTTG+AGG + chr1_2:74967095-74967114 Msa0092480:intron 20.0%
!! AATGAATTCACAAAGTAAAT+GGG - chr1_2:74967580-74967599 None:intergenic 20.0%
!! AAATGAATTCACAAAGTAAA+TGG - chr1_2:74967581-74967600 None:intergenic 20.0%
!!! TTCATTTTAACTTGCTATTA+AGG - chr1_2:74967833-74967852 None:intergenic 20.0%
!!! TTGCTGATTCAAAAAAAAAA+AGG - chr1_2:74967915-74967934 None:intergenic 20.0%
!! TTGAATCAGCAAATATTATT+AGG + chr1_2:74967923-74967942 Msa0092480:intron 20.0%
!! TATTAGAGTAATAGACTAAT+AGG + chr1_2:74968560-74968579 Msa0092480:intron 20.0%
!! ATTAGAGTAATAGACTAATA+GGG + chr1_2:74968561-74968580 Msa0092480:intron 20.0%
!! ACTAATGAATTATCATGTTA+TGG - chr1_2:74968740-74968759 None:intergenic 20.0%
!! AGATACAAAAGAAAAAGATA+TGG + chr1_2:74968816-74968835 Msa0092480:intron 20.0%
!! GATACAAAAGAAAAAGATAT+GGG + chr1_2:74968817-74968836 Msa0092480:intron 20.0%
!! TTTTTATTGGCGCATTTTAT+CGG + chr1_2:74964980-74964999 Msa0092480:intron 25.0%
!! CATTTTATCGGATTTCAATA+TGG + chr1_2:74964992-74965011 Msa0092480:intron 25.0%
! AATTTAATTGTGGACCAAAT+TGG + chr1_2:74965015-74965034 Msa0092480:intron 25.0%
!!! GTTGTTTCCATAAACTATTT+TGG + chr1_2:74965184-74965203 Msa0092480:intron 25.0%
! TATGACTCAAATAAGTCATA+AGG - chr1_2:74965359-74965378 None:intergenic 25.0%
!!! GTTTTAATCTCTTAAGTACA+TGG + chr1_2:74965828-74965847 Msa0092480:intron 25.0%
! AACTAAATTTCAAAGGAATC+TGG + chr1_2:74966161-74966180 Msa0092480:intron 25.0%
!! GAATCTGGAATTAAAACATA+TGG + chr1_2:74966176-74966195 Msa0092480:intron 25.0%
!! TGCTGTATAGTATTTTTCTA+TGG + chr1_2:74966555-74966574 Msa0092480:intron 25.0%
!! AATATTAAAGTTTGGAGTCT+TGG - chr1_2:74966643-74966662 None:intergenic 25.0%
! GTATGCTTATGTATTTAGAA+AGG + chr1_2:74966797-74966816 Msa0092480:intron 25.0%
! ACACAAAAACACAAATATGA+TGG - chr1_2:74967129-74967148 None:intergenic 25.0%
! TTTGACGGTTGAATTATTAA+GGG - chr1_2:74967439-74967458 None:intergenic 25.0%
! ATTTGACGGTTGAATTATTA+AGG - chr1_2:74967440-74967459 None:intergenic 25.0%
! ATGAATTCACAAAGTAAATG+GGG - chr1_2:74967579-74967598 None:intergenic 25.0%
!!! GTTAATTTTACTTGCTAAGA+AGG + chr1_2:74967626-74967645 Msa0092480:intron 25.0%
!!! TTTAGGGAACTTTGTTTTTT+AGG - chr1_2:74968052-74968071 None:intergenic 25.0%
! GATGAGAATAAATTCACTAT+AGG - chr1_2:74968149-74968168 None:intergenic 25.0%
!! ATTGAGTCTAGTTTCAATTT+GGG - chr1_2:74968242-74968261 None:intergenic 25.0%
!! TATTGAGTCTAGTTTCAATT+TGG - chr1_2:74968243-74968262 None:intergenic 25.0%
! TGAAACTAGACTCAATAATT+TGG + chr1_2:74968246-74968265 Msa0092480:intron 25.0%
!! TTTTCTCCTTGTTGAAATTT+GGG - chr1_2:74968477-74968496 None:intergenic 25.0%
!! ATTTTCTCCTTGTTGAAATT+TGG - chr1_2:74968478-74968497 None:intergenic 25.0%
! AAATTTCAACAAGGAGAAAA+TGG + chr1_2:74968477-74968496 Msa0092480:intron 25.0%
! AATTTCAACAAGGAGAAAAT+GGG + chr1_2:74968478-74968497 Msa0092480:intron 25.0%
! TACAAGGGAATACAAAAAAA+GGG - chr1_2:74968522-74968541 None:intergenic 25.0%
! TTACAAGGGAATACAAAAAA+AGG - chr1_2:74968523-74968542 None:intergenic 25.0%
! AAAGAAAAAGATATGGGAAT+TGG + chr1_2:74968823-74968842 Msa0092480:CDS 25.0%
AGTAGTATTAAAGATACTGC+TGG + chr1_2:74964756-74964775 Msa0092480:intron 30.0%
GTAGTATTAAAGATACTGCT+GGG + chr1_2:74964757-74964776 Msa0092480:intron 30.0%
TGAATCACTTTATGTTGAAG+AGG + chr1_2:74964833-74964852 Msa0092480:CDS 30.0%
!! TATGTTGAAGAGGTTGATAT+TGG + chr1_2:74964843-74964862 Msa0092480:CDS 30.0%
! GGTAAGTTGTTAGAACTTTT+AGG + chr1_2:74965054-74965073 Msa0092480:intron 30.0%
! ATATGTTTTGTGACACTGTT+TGG - chr1_2:74965276-74965295 None:intergenic 30.0%
TGAAATAAAGCAATCCAAAC+AGG + chr1_2:74965310-74965329 Msa0092480:intron 30.0%
AAGAATAAATGGCTATCACT+AGG - chr1_2:74965446-74965465 None:intergenic 30.0%
AGTGATAGCCATTTATTCTT+TGG + chr1_2:74965446-74965465 Msa0092480:intron 30.0%
TTCACTCATCTATCAGTATT+TGG + chr1_2:74965473-74965492 Msa0092480:intron 30.0%
! GCTTAATGGAATAGTCTTTT+GGG - chr1_2:74965596-74965615 None:intergenic 30.0%
CAAAAGACTATTCCATTAAG+CGG + chr1_2:74965595-74965614 Msa0092480:intron 30.0%
AAAAGACTATTCCATTAAGC+GGG + chr1_2:74965596-74965615 Msa0092480:intron 30.0%
AAATATTCAATGCGGTACTT+AGG - chr1_2:74965634-74965653 None:intergenic 30.0%
GACTCATAACATAAGTACTT+TGG + chr1_2:74965671-74965690 Msa0092480:intron 30.0%
TGATTCAATTTCTGACTGAT+CGG + chr1_2:74965715-74965734 Msa0092480:intron 30.0%
AATCTTCAAAAATGCATGTG+AGG + chr1_2:74965788-74965807 Msa0092480:intron 30.0%
! TTTGATTTCTGACATATGCA+AGG + chr1_2:74965858-74965877 Msa0092480:intron 30.0%
! TGCAATGCTTTGAATAGTTA+AGG - chr1_2:74966140-74966159 None:intergenic 30.0%
! TCAGCTAATATTTGGAATGA+TGG - chr1_2:74966218-74966237 None:intergenic 30.0%
CTTTCACTTCAGCTAATATT+TGG - chr1_2:74966226-74966245 None:intergenic 30.0%
! TTTGTTTAAGGCCAATCATA+TGG + chr1_2:74966903-74966922 Msa0092480:intron 30.0%
TAAGATACTCTTCCTATTCA+TGG + chr1_2:74966965-74966984 Msa0092480:intron 30.0%
AACTGGAAAATAACTTATCC+AGG + chr1_2:74967006-74967025 Msa0092480:intron 30.0%
TTGACGGTTGAATTATTAAG+GGG - chr1_2:74967438-74967457 None:intergenic 30.0%
GATACTTCATCAAGAAACAT+TGG + chr1_2:74967519-74967538 Msa0092480:intron 30.0%
!!! GAACAATTGTGTGCATTTTT+TGG + chr1_2:74967669-74967688 Msa0092480:intron 30.0%
! GAAGATGAAATATTAGCTTG+AGG - chr1_2:74967747-74967766 None:intergenic 30.0%
TCAGCAAATATTATTAGGCT+AGG + chr1_2:74967928-74967947 Msa0092480:intron 30.0%
!!! TTTTTATCGAGTGGTGTTAT+GGG - chr1_2:74968025-74968044 None:intergenic 30.0%
!!! TTTTTTATCGAGTGGTGTTA+TGG - chr1_2:74968026-74968045 None:intergenic 30.0%
GATAGTTAGGATTATGTCAA+GGG + chr1_2:74968212-74968231 Msa0092480:intron 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + chr1_2:74968405-74968424 Msa0092480:intron 30.0%
TTTCTCCTTGTTGAAATTTG+GGG - chr1_2:74968476-74968495 None:intergenic 30.0%
!!! AGTCGCTCTCTTATTTTTAT+AGG - chr1_2:74968624-74968643 None:intergenic 30.0%
! TTTTCCTTCAATCTTTTGTG+TGG + chr1_2:74968697-74968716 Msa0092480:intron 30.0%
TAAACCACACAAAAGATTGA+AGG - chr1_2:74968704-74968723 None:intergenic 30.0%
ATCATGTTATGGCAATAGAT+AGG - chr1_2:74968729-74968748 None:intergenic 30.0%
ACAAATGGAAAAAGACATGT+TGG - chr1_2:74968768-74968787 None:intergenic 30.0%
ATGGCAAATGTATTGAAAGG+TGG + chr1_2:74964516-74964535 Msa0092480:CDS 35.0%
TTTGGGTAGGAATGAGTAAT+TGG - chr1_2:74964607-74964626 None:intergenic 35.0%
AGTGAGAGAAAAGGGAATTT+GGG - chr1_2:74964624-74964643 None:intergenic 35.0%
AAGAAGAGAGTGAGAGAAAA+GGG - chr1_2:74964632-74964651 None:intergenic 35.0%
! GAAGAAGAAAGAGTGCAAAA+TGG - chr1_2:74964690-74964709 None:intergenic 35.0%
! TCATTGTTTTCAACAGCGAT+GGG - chr1_2:74964732-74964751 None:intergenic 35.0%
CTGCAAATAATTCTAGGTTC+AGG - chr1_2:74964873-74964892 None:intergenic 35.0%
GAACCTAGAATTATTTGCAG+TGG + chr1_2:74964873-74964892 Msa0092480:CDS 35.0%
AGACCACTGCAAATAATTCT+AGG - chr1_2:74964879-74964898 None:intergenic 35.0%
AAACCTGAAGTTGTTCAAGA+GGG - chr1_2:74964914-74964933 None:intergenic 35.0%
GTTCTAACAACTTACCATTG+AGG - chr1_2:74965050-74965069 None:intergenic 35.0%
! TTGTTAGAACTTTTAGGCAC+TGG + chr1_2:74965060-74965079 Msa0092480:intron 35.0%
GATAGCCATTTATTCTTTGG+CGG + chr1_2:74965449-74965468 Msa0092480:intron 35.0%
ACTCATCTATCAGTATTTGG+TGG + chr1_2:74965476-74965495 Msa0092480:intron 35.0%
TTCTGTCGAGAATTAGACTA+CGG - chr1_2:74965534-74965553 None:intergenic 35.0%
CGGGCTTAAGTAATAACAAT+TGG - chr1_2:74965560-74965579 None:intergenic 35.0%
!! AATGGAATAGTCTTTTGGGT+TGG - chr1_2:74965592-74965611 None:intergenic 35.0%
! CGCTTAATGGAATAGTCTTT+TGG - chr1_2:74965597-74965616 None:intergenic 35.0%
ACCTCATATATGCTCAGAAA+AGG + chr1_2:74965761-74965780 Msa0092480:intron 35.0%
! TCCTTTTCTGAGCATATATG+AGG - chr1_2:74965765-74965784 None:intergenic 35.0%
! GTTCATGACTATGTTTCTGT+TGG - chr1_2:74965923-74965942 None:intergenic 35.0%
AAGTTTGCAATAAACCCAAC+AGG + chr1_2:74965971-74965990 Msa0092480:intron 35.0%
! GCTTTGAATAGTTAAGGTCA+GGG - chr1_2:74966134-74966153 None:intergenic 35.0%
! TGCTTTGAATAGTTAAGGTC+AGG - chr1_2:74966135-74966154 None:intergenic 35.0%
AACAAGGCTCTTTGAATGAT+AGG - chr1_2:74966254-74966273 None:intergenic 35.0%
ATTCAGACTAGGAGTTATGA+TGG - chr1_2:74966354-74966373 None:intergenic 35.0%
TATTATATCTCTCTCTCCCA+AGG + chr1_2:74966822-74966841 Msa0092480:intron 35.0%
CCATTATCCTGTTATTCCTT+GGG - chr1_2:74966841-74966860 None:intergenic 35.0%
ACCATTATCCTGTTATTCCT+TGG - chr1_2:74966842-74966861 None:intergenic 35.0%
CTTTAGGCATATTTGTGTGA+TGG + chr1_2:74966929-74966948 Msa0092480:intron 35.0%
CTGACATTCATTAAGTAACC+TGG - chr1_2:74967027-74967046 None:intergenic 35.0%
AACAGTAAGACACAAATGCA+GGG + chr1_2:74967160-74967179 Msa0092480:intron 35.0%
! AAGAATATGGTTTGGATCTG+AGG + chr1_2:74967324-74967343 Msa0092480:intron 35.0%
AGTAGAGTTATTGCCTGATT+GGG - chr1_2:74967382-74967401 None:intergenic 35.0%
AAGTAGAGTTATTGCCTGAT+TGG - chr1_2:74967383-74967402 None:intergenic 35.0%
!!! TTTTATCGAGTGGTGTTATG+GGG - chr1_2:74968024-74968043 None:intergenic 35.0%
!!! TTAGGAGGTTTTTTATCGAG+TGG - chr1_2:74968034-74968053 None:intergenic 35.0%
!!! AGGGAACTTTGTTTTTTAGG+AGG - chr1_2:74968049-74968068 None:intergenic 35.0%
AAAGTTCCCTAAAAGAACAC+AGG + chr1_2:74968059-74968078 Msa0092480:intron 35.0%
!! TTGTGCTATTTGTGTTAGCT+TGG - chr1_2:74968100-74968119 None:intergenic 35.0%
GGATAGTTAGGATTATGTCA+AGG + chr1_2:74968211-74968230 Msa0092480:intron 35.0%
CTAACCAAAGGTCTCAATTT+AGG - chr1_2:74968305-74968324 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + chr1_2:74968408-74968427 Msa0092480:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr1_2:74968452-74968471 None:intergenic 35.0%
!! AACTAGTTCTGCAGTTACAA+GGG - chr1_2:74968537-74968556 None:intergenic 35.0%
!! AAACTAGTTCTGCAGTTACA+AGG - chr1_2:74968538-74968557 None:intergenic 35.0%
!!! GAACCATCTGTTTTAAGATG+AGG - chr1_2:74968854-74968873 None:intergenic 35.0%
TATTTGCATTCTGCAAAGAC+TGG - chr1_2:74968934-74968953 None:intergenic 35.0%
AGAGAAAAGGGAATTTGGGT+AGG - chr1_2:74964620-74964639 None:intergenic 40.0%
GAGTGAGAGAAAAGGGAATT+TGG - chr1_2:74964625-74964644 None:intergenic 40.0%
GAAGAAGAGAGTGAGAGAAA+AGG - chr1_2:74964633-74964652 None:intergenic 40.0%
AAATGGAGAGAACCCAGATA+GGG - chr1_2:74964673-74964692 None:intergenic 40.0%
AAAATGGAGAGAACCCAGAT+AGG - chr1_2:74964674-74964693 None:intergenic 40.0%
!! TTCTTCTTCTGAGACAGTCA+CGG + chr1_2:74964704-74964723 Msa0092480:CDS 40.0%
! CTCATTGTTTTCAACAGCGA+TGG - chr1_2:74964733-74964752 None:intergenic 40.0%
TGCTGGGTTGCTTGATATAA+GGG + chr1_2:74964773-74964792 Msa0092480:CDS 40.0%
TTGGTCAGATTGTGAAAGCA+TGG + chr1_2:74964796-74964815 Msa0092480:CDS 40.0%
GAAACCTGAAGTTGTTCAAG+AGG - chr1_2:74964915-74964934 None:intergenic 40.0%
TGAAGCCGCCAAAGAATAAA+TGG - chr1_2:74965457-74965476 None:intergenic 40.0%
CTTTGGATTTCTCAAGCACT+TGG + chr1_2:74965688-74965707 Msa0092480:intron 40.0%
AAATGCATGTGAGGATAGTC+TGG + chr1_2:74965797-74965816 Msa0092480:intron 40.0%
TCTCTTAAGTACATGGTCAG+TGG + chr1_2:74965835-74965854 Msa0092480:intron 40.0%
ATTCAACTCACTGTCCTGTT+GGG - chr1_2:74965988-74966007 None:intergenic 40.0%
AATTCAACTCACTGTCCTGT+TGG - chr1_2:74965989-74966008 None:intergenic 40.0%
GGTTTCAACACATGAGAGTT+AGG - chr1_2:74966014-74966033 None:intergenic 40.0%
CAATTCAGCTCAATAGAGCT+AGG - chr1_2:74966035-74966054 None:intergenic 40.0%
TTGCCTATCAACATGCAACA+AGG - chr1_2:74966270-74966289 None:intergenic 40.0%
! TTGTTGCATGTTGATAGGCA+AGG + chr1_2:74966269-74966288 Msa0092480:intron 40.0%
! GAGTTATGATGGTGTTTGAG+GGG - chr1_2:74966343-74966362 None:intergenic 40.0%
! GGAGTTATGATGGTGTTTGA+GGG - chr1_2:74966344-74966363 None:intergenic 40.0%
! AGGAGTTATGATGGTGTTTG+AGG - chr1_2:74966345-74966364 None:intergenic 40.0%
! AGTATCGAAGGATTCAGACT+AGG - chr1_2:74966365-74966384 None:intergenic 40.0%
GGCTCTCAGAAGAAGAAAAA+AGG + chr1_2:74966609-74966628 Msa0092480:intron 40.0%
CCCAAGGAATAACAGGATAA+TGG + chr1_2:74966838-74966857 Msa0092480:intron 40.0%
! GCCAATCATATGGTCACTTT+AGG + chr1_2:74966913-74966932 Msa0092480:intron 40.0%
GCCTAAAGTGACCATATGAT+TGG - chr1_2:74966917-74966936 None:intergenic 40.0%
CTGCATTTGTGTCTTACTGT+TGG - chr1_2:74967161-74967180 None:intergenic 40.0%
CAACAGTAAGACACAAATGC+AGG + chr1_2:74967159-74967178 Msa0092480:intron 40.0%
! TTCTTTCGAATCTGAAGCCA+AGG + chr1_2:74967197-74967216 Msa0092480:CDS 40.0%
CAAGTCTTCAGGAATGTTGA+TGG + chr1_2:74967234-74967253 Msa0092480:CDS 40.0%
CAACTCCTGGTGAAAGAATA+TGG + chr1_2:74967311-74967330 Msa0092480:intron 40.0%
CCAAACCATATTCTTTCACC+AGG - chr1_2:74967319-74967338 None:intergenic 40.0%
CCTGGTGAAAGAATATGGTT+TGG + chr1_2:74967316-74967335 Msa0092480:intron 40.0%
GTTTGGATCTGAGGAAGAAA+AGG + chr1_2:74967333-74967352 Msa0092480:intron 40.0%
AGAAAAGGACAATCAACCTG+AGG + chr1_2:74967348-74967367 Msa0092480:intron 40.0%
AGTTATTGCCTGATTGGGTT+TGG - chr1_2:74967377-74967396 None:intergenic 40.0%
AAGGTGTGAGATTCATGAAG+TGG - chr1_2:74967786-74967805 None:intergenic 40.0%
! TGTACTCTTTTTCCTCCTTG+CGG - chr1_2:74967975-74967994 None:intergenic 40.0%
! GGTGTTCCTGTGTTCTTTTA+GGG - chr1_2:74968068-74968087 None:intergenic 40.0%
! TGGTGTTCCTGTGTTCTTTT+AGG - chr1_2:74968069-74968088 None:intergenic 40.0%
TAGGAATAACTCTCGCAACT+AGG - chr1_2:74968130-74968149 None:intergenic 40.0%
ATTCTCATCATGTGTGAGTG+TGG + chr1_2:74968160-74968179 Msa0092480:intron 40.0%
TTCTCATCATGTGTGAGTGT+GGG + chr1_2:74968161-74968180 Msa0092480:intron 40.0%
CAACACAATGAAGATGTTGG+AGG - chr1_2:74968340-74968359 None:intergenic 40.0%
CTCCAACATCTTCATTGTGT+TGG + chr1_2:74968338-74968357 Msa0092480:intron 40.0%
AGCCAACACAATGAAGATGT+TGG - chr1_2:74968343-74968362 None:intergenic 40.0%
!! TCTTCATTGTGTTGGCTTTG+AGG + chr1_2:74968346-74968365 Msa0092480:intron 40.0%
!! CTTCATTGTGTTGGCTTTGA+GGG + chr1_2:74968347-74968366 Msa0092480:intron 40.0%
!! TTCATTGTGTTGGCTTTGAG+GGG + chr1_2:74968348-74968367 Msa0092480:intron 40.0%
! AGTCTTGTCTAATCCGATGT+GGG - chr1_2:74968385-74968404 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr1_2:74968450-74968469 Msa0092480:intron 40.0%
TTAGGCCCCAAATTTCAACA+AGG + chr1_2:74968468-74968487 Msa0092480:intron 40.0%
AGAGCGACTTTCATAGACAT+TGG + chr1_2:74968635-74968654 Msa0092480:intron 40.0%
GAACAAGAGACAAAGACTTG+TGG - chr1_2:74968670-74968689 None:intergenic 40.0%
CAGCCTCATCTTAAAACAGA+TGG + chr1_2:74968848-74968867 Msa0092480:CDS 40.0%
! AGAACCCAGATAGGGTTTTG+GGG - chr1_2:74964665-74964684 None:intergenic 45.0%
! GAGAACCCAGATAGGGTTTT+GGG - chr1_2:74964666-74964685 None:intergenic 45.0%
! AGAGAACCCAGATAGGGTTT+TGG - chr1_2:74964667-74964686 None:intergenic 45.0%
CTGCTGGGTTGCTTGATATA+AGG + chr1_2:74964772-74964791 Msa0092480:CDS 45.0%
GGGTTGCTTGATATAAGGGT+TGG + chr1_2:74964777-74964796 Msa0092480:CDS 45.0%
TGTCCCTCTTGAACAACTTC+AGG + chr1_2:74964908-74964927 Msa0092480:CDS 45.0%
TGAGGCAGACAACACCAATT+TGG - chr1_2:74965032-74965051 None:intergenic 45.0%
!! ATTGGTGTTGTCTGCCTCAA+TGG + chr1_2:74965033-74965052 Msa0092480:intron 45.0%
ATCGGCGACTTTCACTCTAT+CGG + chr1_2:74965408-74965427 Msa0092480:intron 45.0%
ACTACGTACAGGCTGGATTA+GGG - chr1_2:74965506-74965525 None:intergenic 45.0%
!!! TTTTGGGTTGGCTCTCAACA+CGG - chr1_2:74965580-74965599 None:intergenic 45.0%
!! TTGAATCTAGCTCTCCAACG+AGG + chr1_2:74966052-74966071 Msa0092480:intron 45.0%
AAGAGTCTCTGCAAACTCGT+GGG - chr1_2:74966100-74966119 None:intergenic 45.0%
!! GAGCCTTGTTGCATGTTGAT+AGG + chr1_2:74966264-74966283 Msa0092480:intron 45.0%
! TGTTGATAGGCAAGGAAGTG+TGG + chr1_2:74966277-74966296 Msa0092480:intron 45.0%
GTACTGTGATTTCTGACCAG+TGG + chr1_2:74966588-74966607 Msa0092480:intron 45.0%
! TTTCTTCTTCTGAGAGCCAC+TGG - chr1_2:74966607-74966626 None:intergenic 45.0%
TCTCTCTCCCAAGGAATAAC+AGG + chr1_2:74966831-74966850 Msa0092480:intron 45.0%
! GTACTCTTTTTCCTCCTTGC+GGG - chr1_2:74967974-74967993 None:intergenic 45.0%
TGGGGTTGTGTCTGTTATTC+TGG - chr1_2:74968006-74968025 None:intergenic 45.0%
! GTGTTAGCTTGGCAGTGTAT+TGG - chr1_2:74968089-74968108 None:intergenic 45.0%
GAATAACTCTCGCAACTAGG+AGG - chr1_2:74968127-74968146 None:intergenic 45.0%
CTAGGGGCAGAACACAATTA+AGG - chr1_2:74968279-74968298 None:intergenic 45.0%
GTCTCAATTTAGGCGACTAG+GGG - chr1_2:74968295-74968314 None:intergenic 45.0%
GGTCTCAATTTAGGCGACTA+GGG - chr1_2:74968296-74968315 None:intergenic 45.0%
AGGTCTCAATTTAGGCGACT+AGG - chr1_2:74968297-74968316 None:intergenic 45.0%
GTCGCCTAAATTGAGACCTT+TGG + chr1_2:74968298-74968317 Msa0092480:intron 45.0%
CTGCAATGAAGGCTAACCAA+AGG - chr1_2:74968317-74968336 None:intergenic 45.0%
!! TCATTGTGTTGGCTTTGAGG+GGG + chr1_2:74968349-74968368 Msa0092480:intron 45.0%
! GAGTCTTGTCTAATCCGATG+TGG - chr1_2:74968386-74968405 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr1_2:74968443-74968462 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr1_2:74968440-74968459 Msa0092480:intron 45.0%
CATGTTATGCGTACATCTGC+AGG + chr1_2:74968896-74968915 Msa0092480:CDS 45.0%
!! TGTTCGTGAGAGTGTTGTGG+TGG - chr1_2:74964580-74964599 None:intergenic 50.0%
!! CGTTGTTCGTGAGAGTGTTG+TGG - chr1_2:74964583-74964602 None:intergenic 50.0%
AAGCAATCCAAACAGGCCCT+AGG + chr1_2:74965317-74965336 Msa0092480:intron 50.0%
CTAATGACCTAGGGCCTGTT+TGG - chr1_2:74965327-74965346 None:intergenic 50.0%
CAAACAGGCCCTAGGTCATT+AGG + chr1_2:74965325-74965344 Msa0092480:intron 50.0%
CTCTCCCACCTAATGACCTA+GGG - chr1_2:74965336-74965355 None:intergenic 50.0%
!! GATGACGTCGGCTCTTAAAG+GGG - chr1_2:74965391-74965410 None:intergenic 50.0%
!! CGATGACGTCGGCTCTTAAA+GGG - chr1_2:74965392-74965411 None:intergenic 50.0%
! CCTTTAAGAGCCGACGTCAT+CGG + chr1_2:74965390-74965409 Msa0092480:intron 50.0%
GACTTTCACTCTATCGGCAG+TGG + chr1_2:74965414-74965433 Msa0092480:intron 50.0%
GACTACGTACAGGCTGGATT+AGG - chr1_2:74965507-74965526 None:intergenic 50.0%
CTACGGAAACGACTACGTAC+AGG - chr1_2:74965517-74965536 None:intergenic 50.0%
!! TTTGGGTTGGCTCTCAACAC+GGG - chr1_2:74965579-74965598 None:intergenic 50.0%
AGAGTCTCTGCAAACTCGTG+GGG - chr1_2:74966099-74966118 None:intergenic 50.0%
CAAGAGTCTCTGCAAACTCG+TGG - chr1_2:74966101-74966120 None:intergenic 50.0%
! CAGGATAATGGTGTCTGTCC+TGG + chr1_2:74966850-74966869 Msa0092480:intron 50.0%
CTGAAGCCAAGGAATATGCG+TGG + chr1_2:74967208-74967227 Msa0092480:CDS 50.0%
TTGACGCCACGCATATTCCT+TGG - chr1_2:74967217-74967236 None:intergenic 50.0%
TTCACCAGGAGTTGCTTCCT+CGG - chr1_2:74967305-74967324 None:intergenic 50.0%
CAAGATGCACAAAACCCGCA+AGG + chr1_2:74967957-74967976 Msa0092480:intron 50.0%
GGGGCAGAACACAATTAAGG+CGG - chr1_2:74968276-74968295 None:intergenic 50.0%
GATGTTGGAGGCTGCAATGA+AGG - chr1_2:74968328-74968347 None:intergenic 50.0%
! GGGTGGATTTAGTCCCACAT+CGG + chr1_2:74968369-74968388 Msa0092480:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - chr1_2:74968438-74968457 None:intergenic 50.0%
GGTTCTTGTACTGCGATGCT+AGG + chr1_2:74968869-74968888 Msa0092480:CDS 50.0%
!!! TAGGGTTTTGGGGCGTGAAG+AGG - chr1_2:74964655-74964674 None:intergenic 55.0%
TCACGCCCCAAAACCCTATC+TGG + chr1_2:74964657-74964676 Msa0092480:CDS 55.0%
CACGCCCCAAAACCCTATCT+GGG + chr1_2:74964658-74964677 Msa0092480:CDS 55.0%
ACAGGCCCTAGGTCATTAGG+TGG + chr1_2:74965328-74965347 Msa0092480:intron 55.0%
CAGGCCCTAGGTCATTAGGT+GGG + chr1_2:74965329-74965348 Msa0092480:intron 55.0%
GCTCTCCCACCTAATGACCT+AGG - chr1_2:74965337-74965356 None:intergenic 55.0%
!! CCGATGACGTCGGCTCTTAA+AGG - chr1_2:74965393-74965412 None:intergenic 55.0%
GTGAAAGTCGCCGATGACGT+CGG - chr1_2:74965403-74965422 None:intergenic 55.0%
GGAAACGACTACGTACAGGC+TGG - chr1_2:74965513-74965532 None:intergenic 55.0%
CGCAAGTCTCTCCCGCTTAA+TGG - chr1_2:74965610-74965629 None:intergenic 55.0%
! TAGCTCTCCAACGAGGTGTC+AGG + chr1_2:74966059-74966078 Msa0092480:intron 55.0%
! AGCTCTCCAACGAGGTGTCA+GGG + chr1_2:74966060-74966079 Msa0092480:intron 55.0%
! CAACGAGGTGTCAGGGTTTG+CGG + chr1_2:74966067-74966086 Msa0092480:intron 55.0%
! AACGAGGTGTCAGGGTTTGC+GGG + chr1_2:74966068-74966087 Msa0092480:intron 55.0%
ATGCGTGGCGTCAAGTCTTC+AGG + chr1_2:74967223-74967242 Msa0092480:CDS 55.0%
TGAACTTCTGTTCCCTCCCG+AGG + chr1_2:74967285-74967304 Msa0092480:intron 55.0%
TCACCAGGAGTTGCTTCCTC+GGG - chr1_2:74967304-74967323 None:intergenic 55.0%
TGATTGGGTTTGGCAGCCTC+AGG - chr1_2:74967367-74967386 None:intergenic 55.0%
TGAGGCTGCCAAACCCAATC+AGG + chr1_2:74967366-74967385 Msa0092480:intron 55.0%
GATGCACAAAACCCGCAAGG+AGG + chr1_2:74967960-74967979 Msa0092480:intron 55.0%
!! TTGTGTTGGCTTTGAGGGGG+TGG + chr1_2:74968352-74968371 Msa0092480:intron 55.0%
GCACTCCTCACCTTACAAGC+CGG + chr1_2:74968430-74968449 Msa0092480:intron 55.0%
!! GACGTCGGCTCTTAAAGGGG+TGG - chr1_2:74965388-74965407 None:intergenic 60.0%
CGCAAACCCTGACACCTCGT+TGG - chr1_2:74966069-74966088 None:intergenic 60.0%
CAGGAGTTGCTTCCTCGGGA+GGG - chr1_2:74967300-74967319 None:intergenic 60.0%
GGGTGCGGATGGGGATAGTT+AGG + chr1_2:74968199-74968218 Msa0092480:intron 60.0%
CCAGGAGTTGCTTCCTCGGG+AGG - chr1_2:74967301-74967320 None:intergenic 65.0%
CCTCCCGAGGAAGCAACTCC+TGG + chr1_2:74967298-74967317 Msa0092480:intron 65.0%
GCGTGCGTGTGGGTGCGGAT+GGG + chr1_2:74968189-74968208 Msa0092480:intron 70.0%
CGTGCGTGTGGGTGCGGATG+GGG + chr1_2:74968190-74968209 Msa0092480:intron 70.0%
TGTGGGTGCGCGCGTGCGTG+TGG + chr1_2:74968178-74968197 Msa0092480:intron 75.0%
GTGGGTGCGCGCGTGCGTGT+GGG + chr1_2:74968179-74968198 Msa0092480:intron 75.0%
TGCGCGCGTGCGTGTGGGTG+CGG + chr1_2:74968184-74968203 Msa0092480:intron 75.0%
CGCGTGCGTGTGGGTGCGGA+TGG + chr1_2:74968188-74968207 Msa0092480:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 74964516 74968961 74964516 ID=Msa0092480;Name=Msa0092480
chr1_2 mRNA 74964516 74968961 74964516 ID=Msa0092480-mRNA-1;Parent=Msa0092480;Name=Msa0092480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0.25|4|0|216
chr1_2 exon 74964516 74964759 74964516 ID=Msa0092480-mRNA-1:exon:26377;Parent=Msa0092480-mRNA-1
chr1_2 exon 74964769 74964929 74964769 ID=Msa0092480-mRNA-1:exon:26378;Parent=Msa0092480-mRNA-1
chr1_2 exon 74967181 74967282 74967181 ID=Msa0092480-mRNA-1:exon:26379;Parent=Msa0092480-mRNA-1
chr1_2 exon 74968818 74968961 74968818 ID=Msa0092480-mRNA-1:exon:26380;Parent=Msa0092480-mRNA-1
chr1_2 CDS 74964516 74964759 74964516 ID=Msa0092480-mRNA-1:cds;Parent=Msa0092480-mRNA-1
chr1_2 CDS 74964769 74964929 74964769 ID=Msa0092480-mRNA-1:cds;Parent=Msa0092480-mRNA-1
chr1_2 CDS 74967181 74967282 74967181 ID=Msa0092480-mRNA-1:cds;Parent=Msa0092480-mRNA-1
chr1_2 CDS 74968818 74968961 74968818 ID=Msa0092480-mRNA-1:cds;Parent=Msa0092480-mRNA-1
Gene Sequence

>Msa0092480

ATGGCAAATGTATTGAAAGGTGGCAGTGCTGTTATGCTCTCATTCATCTCTTCTTCACGTACCACCACAACACTCTCACGAACAACGTCCAATTACTCATTCCTACCCAAATTCCCTTTTCTCTCACTCTCTTCTTCCTCTTCACGCCCCAAAACCCTATCTGGGTTCTCTCCATTTTGCACTCTTTCTTCTTCTTCTGAGACAGTCACGGAACCCATCGCTGTTGAAAACAATGAGAAGAGTAATACTGCTGGGTTGCTTGATATAAGGGTTGGTCAGATTGTGAAAGCATGGAAACATGATGAAGCTGAATCACTTTATGTTGAAGAGGTTGATATTGGTGAGCCTGAACCTAGAATTATTTGCAGTGGTCTTGTCAATTATGTCCCTCTTGAACAACTTCAGGGCAAAAAAGTTATTGTTCTTTCGAATCTGAAGCCAAGGAATATGCGTGGCGTCAAGTCTTCAGGAATGTTGATGGCTGCTTCTGATTCAAAGCATGAGAATATACAAAAGAAAAAGATATGGGAATTGGTGCAGCCTCATCTTAAAACAGATGGTTCTTGTACTGCGATGCTAGGCGAGCATGTTATGCGTACATCTGCAGGTTCAGTAATATGCCAGTCTTTGCAGAATGCAAATATCTCCTGA

Protein sequence

>Msa0092480

MANVLKGGSAVMLSFISSSRTTTTLSRTTSNYSFLPKFPFLSLSSSSSRPKTLSGFSPFCTLSSSSETVTEPIAVENNEKSNTAGLLDIRVGQIVKAWKHDEAESLYVEEVDIGEPEPRIICSGLVNYVPLEQLQGKKVIVLSNLKPRNMRGVKSSGMLMAASDSKHENIQKKKIWELVQPHLKTDGSCTAMLGEHVMRTSAGSVICQSLQNANIS*