Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134300 | XP_003621030.1 | 99.194 | 124 | 1 | 0 | 1 | 124 | 1 | 124 | 1.39e-77 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134300 | sp|Q6NMM1|GOT1_ARATH | 51.667 | 120 | 58 | 0 | 2 | 121 | 3 | 122 | 1.76e-38 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134300 | A2Q4X9 | 99.194 | 124 | 1 | 0 | 1 | 124 | 1 | 124 | 6.65e-78 | 235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa1134300 | 0.810145 | 1.332928e-50 | -8.615850e-47 |
| Msa0003700 | Msa1134300 | 0.803149 | 4.000704e-49 | -8.615850e-47 |
| Msa0027260 | Msa1134300 | 0.800325 | 1.519315e-48 | -8.615850e-47 |
| Msa0195630 | Msa1134300 | 0.809064 | 2.276031e-50 | -8.615850e-47 |
| Msa0199880 | Msa1134300 | 0.806272 | 8.914860e-50 | -8.615850e-47 |
| Msa0237410 | Msa1134300 | 0.803105 | 4.085596e-49 | -8.615850e-47 |
| Msa0369450 | Msa1134300 | 0.802823 | 4.672621e-49 | -8.615850e-47 |
| Msa1128600 | Msa1134300 | 0.813455 | 2.537258e-51 | -8.615850e-47 |
| Msa1134300 | Msa1367590 | 0.805200 | 1.497611e-49 | -8.615850e-47 |
| Msa1134300 | Msa1376650 | 0.815516 | 8.883381e-52 | -8.615850e-47 |
| Msa1134300 | Msa1381350 | 0.811331 | 7.387120e-51 | -8.615850e-47 |
| Msa1134300 | Msa1422580 | 0.808475 | 3.040678e-50 | -8.615850e-47 |
| Msa0524500 | Msa1134300 | 0.841529 | 4.497587e-58 | -8.615850e-47 |
| Msa0556060 | Msa1134300 | 0.817059 | 4.013669e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134300 | MtrunA17_Chr7g0214681 | 99.194 | 124 | 1 | 0 | 1 | 124 | 1 | 124 | 1.28e-81 | 235 |
| Msa1134300 | MtrunA17_Chr5g0441811 | 52.066 | 121 | 58 | 0 | 1 | 121 | 2 | 122 | 1.39e-42 | 137 |
| Msa1134300 | MtrunA17_Chr3g0094381 | 52.066 | 121 | 58 | 0 | 1 | 121 | 2 | 122 | 1.38e-41 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1134300 | AT1G05785.7 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 9.94e-55 | 169 |
| Msa1134300 | AT1G05785.6 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 9.94e-55 | 169 |
| Msa1134300 | AT1G05785.1 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 1.07e-54 | 167 |
| Msa1134300 | AT1G05785.5 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 1.07e-54 | 167 |
| Msa1134300 | AT1G05785.2 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 1.07e-54 | 167 |
| Msa1134300 | AT1G05785.4 | 66.393 | 122 | 41 | 0 | 1 | 122 | 1 | 122 | 1.82e-54 | 167 |
| Msa1134300 | AT1G05785.3 | 65.789 | 114 | 39 | 0 | 9 | 122 | 3 | 116 | 4.52e-49 | 153 |
| Msa1134300 | AT3G49420.3 | 52.893 | 121 | 57 | 0 | 1 | 121 | 2 | 122 | 9.48e-44 | 140 |
| Msa1134300 | AT3G49420.1 | 52.893 | 121 | 57 | 0 | 1 | 121 | 2 | 122 | 9.48e-44 | 140 |
| Msa1134300 | AT3G49420.2 | 52.893 | 121 | 57 | 0 | 1 | 121 | 2 | 122 | 9.48e-44 | 140 |
| Msa1134300 | AT5G01430.2 | 52.893 | 121 | 57 | 0 | 1 | 121 | 2 | 122 | 9.48e-44 | 140 |
| Msa1134300 | AT5G01430.1 | 52.893 | 121 | 57 | 0 | 1 | 121 | 2 | 122 | 9.48e-44 | 140 |
| Msa1134300 | AT3G03180.1 | 51.667 | 120 | 58 | 0 | 2 | 121 | 3 | 122 | 1.79e-39 | 129 |
| Msa1134300 | AT3G03180.3 | 51.667 | 120 | 58 | 0 | 2 | 121 | 3 | 122 | 3.80e-39 | 130 |
| Msa1134300 | AT3G03180.2 | 48.810 | 84 | 43 | 0 | 38 | 121 | 1 | 84 | 1.01e-21 | 83.2 |
Find 39 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATCTTCTTCACGTTTCT+TGG | 0.168278 | 7_4:-690257 | Msa1134300:CDS |
| GAGATTGGCATAGGGCTAAT+TGG | 0.295268 | 7_4:-690284 | Msa1134300:CDS |
| GGCATAGGGCTAATTGGTTT+TGG | 0.297009 | 7_4:-690278 | Msa1134300:CDS |
| AGACGAAAACGGGGATATAA+TGG | 0.314103 | 7_4:+691256 | None:intergenic |
| TCAAGTATTATACCAACTAT+TGG | 0.335018 | 7_4:+688491 | None:intergenic |
| CTCTACCATATCCCAGTTGT+TGG | 0.338776 | 7_4:-688324 | Msa1134300:CDS |
| GGTACTGCATCATTTCTTCT+AGG | 0.340109 | 7_4:-688539 | Msa1134300:CDS |
| CGTATAACCCATCCAACAAC+TGG | 0.347272 | 7_4:+688312 | None:intergenic |
| GGTATAATACTTGAAATATA+CGG | 0.360101 | 7_4:-688482 | Msa1134300:CDS |
| CCCATCCAACAACTGGGATA+TGG | 0.361362 | 7_4:+688319 | None:intergenic |
| CAGTTGTTGGATGGGTTATA+CGG | 0.363526 | 7_4:-688311 | Msa1134300:CDS |
| AGACAGCTTCAGACGAAAAC+GGG | 0.372307 | 7_4:+691246 | None:intergenic |
| CACTAGTAGAGCAAACTATA+AGG | 0.384542 | 7_4:-690037 | Msa1134300:intron |
| ACCATATCCCAGTTGTTGGA+TGG | 0.417356 | 7_4:-688320 | Msa1134300:CDS |
| GACGAAAACGGGGATATAAT+GGG | 0.421019 | 7_4:+691257 | None:intergenic |
| AATCAGATACTTTGGTTGGC+AGG | 0.430906 | 7_4:-690102 | Msa1134300:intron |
| GCATCTGGAATCAGATACTT+TGG | 0.437779 | 7_4:-690110 | Msa1134300:intron |
| ATTTACCTTGGTGGTGAAAG+AGG | 0.445028 | 7_4:+691187 | None:intergenic |
| AAGACAGCTTCAGACGAAAA+CGG | 0.478906 | 7_4:+691245 | None:intergenic |
| AAAATGAAAATTTACCTTGG+TGG | 0.482642 | 7_4:+691178 | None:intergenic |
| TTTGTGAGGTGGCCAATAGT+TGG | 0.500733 | 7_4:-688503 | Msa1134300:CDS |
| ATCAGATACTTTGGTTGGCA+GGG | 0.502636 | 7_4:-690101 | Msa1134300:intron |
| CTGGAATCAGATACTTTGGT+TGG | 0.506803 | 7_4:-690106 | Msa1134300:intron |
| CCATATCCCAGTTGTTGGAT+GGG | 0.513262 | 7_4:-688319 | Msa1134300:CDS |
| GACCGTGGTTTGCTTGCTCT+AGG | 0.538182 | 7_4:-690218 | Msa1134300:CDS |
| CGGGGATATAATGGGCCGGT+GGG | 0.540183 | 7_4:+691265 | None:intergenic |
| AAACATGCAGAGATTGGCAT+AGG | 0.550538 | 7_4:-690293 | Msa1134300:intron |
| AGGAATCAACTAACCTGAAG+AGG | 0.556909 | 7_4:+688450 | None:intergenic |
| TCAGATACTTTGGTTGGCAG+GGG | 0.564679 | 7_4:-690100 | Msa1134300:intron |
| CAACAACTGGGATATGGTAG+AGG | 0.565494 | 7_4:+688325 | None:intergenic |
| AACATGCAGAGATTGGCATA+GGG | 0.629442 | 7_4:-690292 | Msa1134300:intron |
| ACTAGTGAAGAGTGACCACA+TGG | 0.643753 | 7_4:+690053 | None:intergenic |
| AAAACGGGGATATAATGGGC+CGG | 0.647305 | 7_4:+691261 | None:intergenic |
| GTAACAAATCTATGACCCAC+CGG | 0.659380 | 7_4:-691280 | Msa1134300:five_prime_UTR |
| TGCTTGGTTGGCGTTCCATG+TGG | 0.666201 | 7_4:-690068 | Msa1134300:CDS |
| GACAGCTTCAGACGAAAACG+GGG | 0.667293 | 7_4:+691247 | None:intergenic |
| GTATAACCCATCCAACAACT+GGG | 0.675755 | 7_4:+688313 | None:intergenic |
| AATAACCTCTTTCACCACCA+AGG | 0.676631 | 7_4:-691192 | Msa1134300:intron |
| TTCCTAGAGCAAGCAAACCA+CGG | 0.680667 | 7_4:+690216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAAAAATAAAAATAA+AGG | + | chr7_4:687765-687784 | None:intergenic | 0.0% |
| !! | TTATTTAAATTGTTTAACTA+CGG | - | chr7_4:687894-687913 | Msa1134300:intron | 10.0% |
| !!! | TATATATTTTTCTTTAGAAT+AGG | - | chr7_4:688223-688242 | Msa1134300:intron | 10.0% |
| !!! | ATATATTTTTCTTTAGAATA+GGG | - | chr7_4:688224-688243 | Msa1134300:intron | 10.0% |
| !! | AAAAAAATGAAAATTTACCT+TGG | + | chr7_4:687212-687231 | None:intergenic | 15.0% |
| !!! | AATTTGATTGATTTCTAATA+AGG | - | chr7_4:687271-687290 | Msa1134300:intron | 15.0% |
| !!! | ATTTGATTGATTTCTAATAA+GGG | - | chr7_4:687272-687291 | Msa1134300:intron | 15.0% |
| !! | TTAAGTTATTTATCTAAACA+GGG | + | chr7_4:687546-687565 | None:intergenic | 15.0% |
| !! | ATTAAGTTATTTATCTAAAC+AGG | + | chr7_4:687547-687566 | None:intergenic | 15.0% |
| !!! | AAATAAAAATAAAGGTGTAT+TGG | + | chr7_4:687757-687776 | None:intergenic | 15.0% |
| !! | GAAATAAAATGTTTCATTAA+TGG | + | chr7_4:688397-688416 | None:intergenic | 15.0% |
| !!! | TTATTTTCTTAAATTGTTAC+CGG | + | chr7_4:688547-688566 | None:intergenic | 15.0% |
| !! | TATACAATTAAAAGGAAATT+AGG | + | chr7_4:691171-691190 | None:intergenic | 15.0% |
| !!! | ATTTTTGCTTGTAATCAATA+TGG | - | chr7_4:687384-687403 | Msa1134300:intron | 20.0% |
| !!! | TGATTTGGTTTTAAAAACAT+TGG | + | chr7_4:687822-687841 | None:intergenic | 20.0% |
| !!! | TTTTTAAAACCAAATCAAAC+CGG | - | chr7_4:687825-687844 | Msa1134300:intron | 20.0% |
| !!! | CATGTTTTTCAAAATTTTCA+AGG | + | chr7_4:688078-688097 | None:intergenic | 20.0% |
| !!! | TTCCAAATCTACATTTATTT+TGG | - | chr7_4:689140-689159 | Msa1134300:intron | 20.0% |
| !! | TTCCAAAATAAATGTAGATT+TGG | + | chr7_4:689145-689164 | None:intergenic | 20.0% |
| !!! | TTCAACTTTTAATGATTACT+TGG | - | chr7_4:689377-689396 | Msa1134300:intron | 20.0% |
| !!! | TATTTTTCTTTAAGAGTACT+CGG | - | chr7_4:689626-689645 | Msa1134300:intron | 20.0% |
| !!! | ACATTATTTACTTCTTTTGT+AGG | - | chr7_4:689823-689842 | Msa1134300:intron | 20.0% |
| !!! | CATTATTTACTTCTTTTGTA+GGG | - | chr7_4:689824-689843 | Msa1134300:intron | 20.0% |
| !! | GGTATAATACTTGAAATATA+CGG | - | chr7_4:689902-689921 | Msa1134300:intron | 20.0% |
| !! | GAAATAAATATAGATAGCAT+AGG | - | chr7_4:690226-690245 | Msa1134300:CDS | 20.0% |
| !!! | TATTGAAAAGTGTTAGTTTA+TGG | + | chr7_4:690293-690312 | None:intergenic | 20.0% |
| !!! | TTTTCAATATACTTTCCATT+TGG | - | chr7_4:690304-690323 | Msa1134300:intron | 20.0% |
| !! | TTGAATTAAATCATACCAAA+TGG | + | chr7_4:690322-690341 | None:intergenic | 20.0% |
| !!! | GTGAAATTTAGTTTATATTG+TGG | - | chr7_4:690895-690914 | Msa1134300:intron | 20.0% |
| !!! | TTTATATTGTGGCTATATTT+TGG | - | chr7_4:690906-690925 | Msa1134300:intron | 20.0% |
| !!! | TCCTTTTAATTGTATACTTT+TGG | - | chr7_4:691175-691194 | Msa1134300:intron | 20.0% |
| !!! | ACCAAAAGTATACAATTAAA+AGG | + | chr7_4:691179-691198 | None:intergenic | 20.0% |
| !!! | AATTGTATACTTTTGGTTTA+TGG | - | chr7_4:691182-691201 | Msa1134300:intron | 20.0% |
| !!! | ATTTAGAGGAAATTTTGTTT+TGG | - | chr7_4:691208-691227 | Msa1134300:five_prime_UTR | 20.0% |
| !!! | TTTAGAGGAAATTTTGTTTT+GGG | - | chr7_4:691209-691228 | Msa1134300:five_prime_UTR | 20.0% |
| ! | AAAATGAAAATTTACCTTGG+TGG | + | chr7_4:687209-687228 | None:intergenic | 25.0% |
| ! | TAAGCAATAACTTGAATTGA+AGG | + | chr7_4:687239-687258 | None:intergenic | 25.0% |
| ! | GATTTCTAATAAGGGTTAAT+TGG | - | chr7_4:687280-687299 | Msa1134300:intron | 25.0% |
| !! | AAAATAAAGGTGTATTGGAT+TGG | + | chr7_4:687752-687771 | None:intergenic | 25.0% |
| !!! | GGTTTTAAAAACATTGGTTA+GGG | + | chr7_4:687816-687835 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAAAACATTGGTT+AGG | + | chr7_4:687817-687836 | None:intergenic | 25.0% |
| ! | AATGTTTCAAAAACCAAAAC+CGG | + | chr7_4:687985-688004 | None:intergenic | 25.0% |
| !!! | GATTCATGTTGACTTAATTT+TGG | - | chr7_4:688246-688265 | Msa1134300:intron | 25.0% |
| !!! | TGTTGACTTAATTTTGGTTT+TGG | - | chr7_4:688252-688271 | Msa1134300:intron | 25.0% |
| ! | TATCGTACAGATATCAAAAT+TGG | + | chr7_4:689073-689092 | None:intergenic | 25.0% |
| ! | TTTGTACAGTAAATTTACCA+GGG | + | chr7_4:689103-689122 | None:intergenic | 25.0% |
| ! | ATTTGTACAGTAAATTTACC+AGG | + | chr7_4:689104-689123 | None:intergenic | 25.0% |
| ! | ATCAATAAATAACCTCTAAC+TGG | + | chr7_4:689459-689478 | None:intergenic | 25.0% |
| ! | AAAACAATTCTTCAGTTCAT+TGG | + | chr7_4:689574-689593 | None:intergenic | 25.0% |
| ! | TCAAACTAGATATTTATGAC+AGG | + | chr7_4:689744-689763 | None:intergenic | 25.0% |
| ! | TCAAGTATTATACCAACTAT+TGG | + | chr7_4:689896-689915 | None:intergenic | 25.0% |
| ! | TGGTATGATTTAATTCAACT+TGG | - | chr7_4:690324-690343 | Msa1134300:intron | 25.0% |
| ! | GGTATGATTTAATTCAACTT+GGG | - | chr7_4:690325-690344 | Msa1134300:intron | 25.0% |
| ! | ATGTCAAATACTCACATATA+GGG | + | chr7_4:690628-690647 | None:intergenic | 25.0% |
| ! | CTAAATTTCACGACAAATTT+CGG | + | chr7_4:690886-690905 | None:intergenic | 25.0% |
| ! | GTAAACAAGAACAAAAAACA+AGG | - | chr7_4:690964-690983 | Msa1134300:intron | 25.0% |
| ! | ATTTCAGTAAATCTACAGTT+TGG | - | chr7_4:691072-691091 | Msa1134300:intron | 25.0% |
| ! | ACTTCAACAAAATAATGTGA+TGG | - | chr7_4:691096-691115 | Msa1134300:intron | 25.0% |
| ! | TTGGTTTATGGAAAATTTAG+AGG | - | chr7_4:691194-691213 | Msa1134300:five_prime_UTR | 25.0% |
| !!! | TTAGAGGAAATTTTGTTTTG+GGG | - | chr7_4:691210-691229 | Msa1134300:five_prime_UTR | 25.0% |
| AAGCTATTATAGAAAGCTTC+TGG | - | chr7_4:687611-687630 | Msa1134300:intron | 30.0% | |
| AATAAGCTAAAAACAGTTCG+TGG | - | chr7_4:687635-687654 | Msa1134300:intron | 30.0% | |
| !!! | GGTTTTGGTTTTTGAAACAT+TGG | - | chr7_4:687984-688003 | Msa1134300:intron | 30.0% |
| TTTGAAAAACATGCAGAGAT+TGG | - | chr7_4:688085-688104 | Msa1134300:intron | 30.0% | |
| ! | ATAATTCTTTTCTTTGACCG+TGG | - | chr7_4:688151-688170 | Msa1134300:intron | 30.0% |
| !!! | TTAATTTTGGTTTTGGCATC+TGG | - | chr7_4:688259-688278 | Msa1134300:intron | 30.0% |
| ATATCACAAGAGATGCATTA+GGG | + | chr7_4:688435-688454 | None:intergenic | 30.0% | |
| !!! | TAGCCCTTTTTTATTCAGTA+AGG | - | chr7_4:688803-688822 | Msa1134300:intron | 30.0% |
| !!! | AGCCCTTTTTTATTCAGTAA+GGG | - | chr7_4:688804-688823 | Msa1134300:intron | 30.0% |
| CACCCTTACTGAATAAAAAA+GGG | + | chr7_4:688809-688828 | None:intergenic | 30.0% | |
| ACACCCTTACTGAATAAAAA+AGG | + | chr7_4:688810-688829 | None:intergenic | 30.0% | |
| CTTAATCTTAGTTAGCACAA+CGG | + | chr7_4:688842-688861 | None:intergenic | 30.0% | |
| TTTGTATATCACATCAGCAT+AGG | - | chr7_4:688952-688971 | Msa1134300:intron | 30.0% | |
| TTGGTCAAACACAAATAGAA+AGG | + | chr7_4:689054-689073 | None:intergenic | 30.0% | |
| TCAGAAAATGACAAACCTAA+GGG | + | chr7_4:689293-689312 | None:intergenic | 30.0% | |
| ATCAGAAAATGACAAACCTA+AGG | + | chr7_4:689294-689313 | None:intergenic | 30.0% | |
| ! | AAAAGTAGGAACTATTTTGC+TGG | + | chr7_4:689429-689448 | None:intergenic | 30.0% |
| !! | ATTTTACTTGAAGTACTCCT+TGG | - | chr7_4:689517-689536 | Msa1134300:intron | 30.0% |
| ! | GGATAATGAAGCATTCTATA+TGG | - | chr7_4:689791-689810 | Msa1134300:intron | 30.0% |
| ACCTCACAAAAATGAAAAAG+AGG | + | chr7_4:689871-689890 | None:intergenic | 30.0% | |
| !! | TCTTTTTCATTTTTGTGAGG+TGG | - | chr7_4:689870-689889 | Msa1134300:intron | 30.0% |
| ! | GCACTTATCATTGATGTTTT+TGG | - | chr7_4:690003-690022 | Msa1134300:intron | 30.0% |
| CAGACATACATACAAAAAGA+GGG | + | chr7_4:690166-690185 | None:intergenic | 30.0% | |
| ACAGACATACATACAAAAAG+AGG | + | chr7_4:690167-690186 | None:intergenic | 30.0% | |
| !! | TAAATGACATCGATTCCATA+GGG | - | chr7_4:690267-690286 | Msa1134300:CDS | 30.0% |
| TTAATCATGCTAATCACGTA+TGG | + | chr7_4:690504-690523 | None:intergenic | 30.0% | |
| TAGGGATATTGTGAGAATAT+AGG | + | chr7_4:690610-690629 | None:intergenic | 30.0% | |
| CATGTCAAATACTCACATAT+AGG | + | chr7_4:690629-690648 | None:intergenic | 30.0% | |
| ! | TTGTTGTTGCTTCTAACTAT+AGG | - | chr7_4:690743-690762 | Msa1134300:intron | 30.0% |
| ! | TGTTGTTGCTTCTAACTATA+GGG | - | chr7_4:690744-690763 | Msa1134300:intron | 30.0% |
| ! | TTTTGTAGTTGTTTGCCATA+AGG | - | chr7_4:690843-690862 | Msa1134300:intron | 30.0% |
| AAAGATGCTTATATGCCTTA+TGG | + | chr7_4:690861-690880 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAATGAAG+TGG | + | chr7_4:687166-687185 | None:intergenic | 35.0% | |
| GAATCTTACTGTAACTGCAT+TGG | - | chr7_4:687501-687520 | Msa1134300:intron | 35.0% | |
| TGTGAATTGTGACAGTGTTT+AGG | + | chr7_4:687690-687709 | None:intergenic | 35.0% | |
| TAAAACCAAATCAAACCGGA+CGG | - | chr7_4:687829-687848 | Msa1134300:intron | 35.0% | |
| AAAGTAGTTGAACCATGACT+CGG | - | chr7_4:687940-687959 | Msa1134300:intron | 35.0% | |
| CACTAGTAGAGCAAACTATA+AGG | - | chr7_4:688347-688366 | Msa1134300:CDS | 35.0% | |
| CATATCACAAGAGATGCATT+AGG | + | chr7_4:688436-688455 | None:intergenic | 35.0% | |
| CTAATGCATCTCTTGTGATA+TGG | - | chr7_4:688434-688453 | Msa1134300:intron | 35.0% | |
| !! | TGATATGGATTAGTGAATCC+TGG | - | chr7_4:688449-688468 | Msa1134300:intron | 35.0% |
| TGTACTTCTAGTCACACAAT+AGG | + | chr7_4:688690-688709 | None:intergenic | 35.0% | |
| TCAAATAAGCCTCTTGTAGT+GGG | - | chr7_4:688760-688779 | Msa1134300:intron | 35.0% | |
| ! | AGATGATAGTGTTGAAGCAA+TGG | - | chr7_4:688983-689002 | Msa1134300:intron | 35.0% |
| ! | GATGATAGTGTTGAAGCAAT+GGG | - | chr7_4:688984-689003 | Msa1134300:intron | 35.0% |
| !! | CTGCAGGAAACTTTTTAACT+AGG | + | chr7_4:689217-689236 | None:intergenic | 35.0% |
| ATATATTAACGCTACCTCCT+TGG | + | chr7_4:689241-689260 | None:intergenic | 35.0% | |
| ATATTTCCGACATATCCCTT+AGG | - | chr7_4:689275-689294 | Msa1134300:intron | 35.0% | |
| GATTACTTGGACAAAGAAAC+TGG | - | chr7_4:689390-689409 | Msa1134300:intron | 35.0% | |
| !!! | GTAAACTTCTGTTTTTGCCA+AGG | + | chr7_4:689537-689556 | None:intergenic | 35.0% |
| !! | GCCTCTTTTTCATTTTTGTG+AGG | - | chr7_4:689867-689886 | Msa1134300:intron | 35.0% |
| !!! | ATTGATGTTTTTGGTTGCAG+TGG | - | chr7_4:690012-690031 | Msa1134300:intron | 35.0% |
| !!! | TTTTTGGTTGCAGTGGTTTT+TGG | - | chr7_4:690019-690038 | Msa1134300:intron | 35.0% |
| TACATACAAAAAGAGGGAGA+GGG | + | chr7_4:690160-690179 | None:intergenic | 35.0% | |
| ATACATACAAAAAGAGGGAG+AGG | + | chr7_4:690161-690180 | None:intergenic | 35.0% | |
| TACACATGCATACATACAAG+TGG | + | chr7_4:690200-690219 | None:intergenic | 35.0% | |
| !! | CTAAATGACATCGATTCCAT+AGG | - | chr7_4:690266-690285 | Msa1134300:CDS | 35.0% |
| ATTTCCTGTCTGTATCAGTA+AGG | - | chr7_4:690371-690390 | Msa1134300:intron | 35.0% | |
| CTCTTTGCAAGTCATCATAT+AGG | + | chr7_4:690473-690492 | None:intergenic | 35.0% | |
| TCATATTTGCAACACACACA+TGG | + | chr7_4:690530-690549 | None:intergenic | 35.0% | |
| GTGTGTGTTGCAAATATGAT+CGG | - | chr7_4:690531-690550 | Msa1134300:intron | 35.0% | |
| ! | CTTCTAGATTGACTGTGTTT+TGG | - | chr7_4:690563-690582 | Msa1134300:intron | 35.0% |
| ATCTCCTTCTGCAATAATCA+AGG | + | chr7_4:690722-690741 | None:intergenic | 35.0% | |
| ! | GTTGTTGCTTCTAACTATAG+GGG | - | chr7_4:690745-690764 | Msa1134300:intron | 35.0% |
| CAAAAAACAAGGATACAAGC+TGG | - | chr7_4:690975-690994 | Msa1134300:intron | 35.0% | |
| AACATGTACAAGTCTACATC+AGG | + | chr7_4:691039-691058 | None:intergenic | 35.0% | |
| GATGTAGACTTGTACATGTT+TGG | - | chr7_4:691039-691058 | Msa1134300:intron | 35.0% | |
| AGACTTGTACATGTTTGGAT+TGG | - | chr7_4:691044-691063 | Msa1134300:intron | 35.0% | |
| GTAACAAATCTATGACCCAC+CGG | - | chr7_4:687104-687123 | Msa1134300:intron | 40.0% | |
| GACGAAAACGGGGATATAAT+GGG | + | chr7_4:687130-687149 | None:intergenic | 40.0% | |
| AGACGAAAACGGGGATATAA+TGG | + | chr7_4:687131-687150 | None:intergenic | 40.0% | |
| AAGACAGCTTCAGACGAAAA+CGG | + | chr7_4:687142-687161 | None:intergenic | 40.0% | |
| AATAACCTCTTTCACCACCA+AGG | - | chr7_4:687192-687211 | Msa1134300:intron | 40.0% | |
| !! | ATTTACCTTGGTGGTGAAAG+AGG | + | chr7_4:687200-687219 | None:intergenic | 40.0% |
| TCACAACTCACAAGTGCTTA+TGG | - | chr7_4:687705-687724 | Msa1134300:intron | 40.0% | |
| TACTTTAAACCGCTCGAATC+GGG | + | chr7_4:687926-687945 | None:intergenic | 40.0% | |
| CTACTTTAAACCGCTCGAAT+CGG | + | chr7_4:687927-687946 | None:intergenic | 40.0% | |
| AAACATGCAGAGATTGGCAT+AGG | - | chr7_4:688091-688110 | Msa1134300:intron | 40.0% | |
| AACATGCAGAGATTGGCATA+GGG | - | chr7_4:688092-688111 | Msa1134300:intron | 40.0% | |
| ! | GCATCTGGAATCAGATACTT+TGG | - | chr7_4:688274-688293 | Msa1134300:intron | 40.0% |
| CTGGAATCAGATACTTTGGT+TGG | - | chr7_4:688278-688297 | Msa1134300:intron | 40.0% | |
| AATCAGATACTTTGGTTGGC+AGG | - | chr7_4:688282-688301 | Msa1134300:intron | 40.0% | |
| ATCAGATACTTTGGTTGGCA+GGG | - | chr7_4:688283-688302 | Msa1134300:intron | 40.0% | |
| !! | ATGGATTAGTGAATCCTGGT+AGG | - | chr7_4:688453-688472 | Msa1134300:intron | 40.0% |
| GACACAACTTTAATCCGAAG+TGG | - | chr7_4:688631-688650 | Msa1134300:intron | 40.0% | |
| ACAACTTTAATCCGAAGTGG+CGG | - | chr7_4:688634-688653 | Msa1134300:intron | 40.0% | |
| ATAAGCCTCTTGCAAATGCA+AGG | - | chr7_4:688725-688744 | Msa1134300:intron | 40.0% | |
| CAAGAGGCTTATTTGACAAG+AGG | + | chr7_4:688756-688775 | None:intergenic | 40.0% | |
| GTCAAATAAGCCTCTTGTAG+TGG | - | chr7_4:688759-688778 | Msa1134300:intron | 40.0% | |
| AAAAAGTTTCCTGCAGTCCA+AGG | - | chr7_4:689221-689240 | Msa1134300:intron | 40.0% | |
| GACAAACCTAAGGGATATGT+CGG | + | chr7_4:689284-689303 | None:intergenic | 40.0% | |
| TAACTGGCAAGTGGAAAAGT+AGG | + | chr7_4:689443-689462 | None:intergenic | 40.0% | |
| AATAACCTCTAACTGGCAAG+TGG | + | chr7_4:689452-689471 | None:intergenic | 40.0% | |
| GGTACTGCATCATTTCTTCT+AGG | - | chr7_4:689845-689864 | Msa1134300:intron | 40.0% | |
| AGGAATCAACTAACCTGAAG+AGG | + | chr7_4:689937-689956 | None:intergenic | 40.0% | |
| GAGAGTTCAAGAAGTCATCT+AGG | + | chr7_4:689957-689976 | None:intergenic | 40.0% | |
| GTATAACCCATCCAACAACT+GGG | + | chr7_4:690074-690093 | None:intergenic | 40.0% | |
| !! | CAGTTGTTGGATGGGTTATA+CGG | - | chr7_4:690073-690092 | Msa1134300:CDS | 40.0% |
| ! | AGTGTTAGTTTATGGCCCTA+TGG | + | chr7_4:690285-690304 | None:intergenic | 40.0% |
| CAAACCTTACTGATACAGAC+AGG | + | chr7_4:690378-690397 | None:intergenic | 40.0% | |
| AGCTCCTTGATTATTGCAGA+AGG | - | chr7_4:690715-690734 | Msa1134300:intron | 40.0% | |
| ! | GTAAAGCAGTTTGGTTTCCT+TGG | - | chr7_4:690771-690790 | Msa1134300:intron | 40.0% |
| CAGACAAATCACTAACACCA+AGG | + | chr7_4:690791-690810 | None:intergenic | 40.0% | |
| !!! | GGCTATATTTTGGTGCTTCA+AGG | - | chr7_4:690916-690935 | Msa1134300:intron | 40.0% |
| CTGTCATCAATCCTTAATGC+TGG | + | chr7_4:691130-691149 | None:intergenic | 40.0% | |
| !! | AAAACGGGGATATAATGGGC+CGG | + | chr7_4:687126-687145 | None:intergenic | 45.0% |
| AGACAGCTTCAGACGAAAAC+GGG | + | chr7_4:687141-687160 | None:intergenic | 45.0% | |
| CTGTAGACAATGCCAGCTTA+CGG | + | chr7_4:687869-687888 | None:intergenic | 45.0% | |
| AGCTGGCATTGTCTACAGTT+CGG | - | chr7_4:687871-687890 | Msa1134300:intron | 45.0% | |
| GAGATTGGCATAGGGCTAAT+TGG | - | chr7_4:688100-688119 | Msa1134300:intron | 45.0% | |
| !! | GGCATAGGGCTAATTGGTTT+TGG | - | chr7_4:688106-688125 | Msa1134300:intron | 45.0% |
| GGCATCTTCTTCACGTTTCT+TGG | - | chr7_4:688127-688146 | Msa1134300:intron | 45.0% | |
| TTCCTAGAGCAAGCAAACCA+CGG | + | chr7_4:688171-688190 | None:intergenic | 45.0% | |
| TCAGATACTTTGGTTGGCAG+GGG | - | chr7_4:688284-688303 | Msa1134300:intron | 45.0% | |
| ! | GGGTAGCAATTTTGCTTGGT+TGG | - | chr7_4:688304-688323 | Msa1134300:CDS | 45.0% |
| ACTAGTGAAGAGTGACCACA+TGG | + | chr7_4:688334-688353 | None:intergenic | 45.0% | |
| TGACACTGACACATAGACTC+CGG | - | chr7_4:688525-688544 | Msa1134300:CDS | 45.0% | |
| CCTTACCTTGCATTTGCAAG+AGG | + | chr7_4:688733-688752 | None:intergenic | 45.0% | |
| CCTCTTGCAAATGCAAGGTA+AGG | - | chr7_4:688730-688749 | Msa1134300:intron | 45.0% | |
| ! | ATAAGCCTCTTGTAGTGGGA+TGG | - | chr7_4:688764-688783 | Msa1134300:intron | 45.0% |
| ! | TAAGCCTCTTGTAGTGGGAT+GGG | - | chr7_4:688765-688784 | Msa1134300:intron | 45.0% |
| CCAGTTTAGCAGATCTAGAG+AGG | + | chr7_4:688923-688942 | None:intergenic | 45.0% | |
| CCTCTCTAGATCTGCTAAAC+TGG | - | chr7_4:688920-688939 | Msa1134300:intron | 45.0% | |
| ! | CTGTACGATAGTTGATACCC+TGG | - | chr7_4:689083-689102 | Msa1134300:intron | 45.0% |
| ! | CTGATGACTCGTTGATTGAG+AGG | - | chr7_4:689309-689328 | Msa1134300:intron | 45.0% |
| ! | CTTTTCCACTTGCCAGTTAG+AGG | - | chr7_4:689444-689463 | Msa1134300:intron | 45.0% |
| !! | TTTAAGAGTACTCGGCTGCA+TGG | - | chr7_4:689634-689653 | Msa1134300:intron | 45.0% |
| TTTGTGAGGTGGCCAATAGT+TGG | - | chr7_4:689881-689900 | Msa1134300:intron | 45.0% | |
| ! | ACGGTTGTGTTTTCCTCTTC+AGG | - | chr7_4:689921-689940 | Msa1134300:intron | 45.0% |
| CAACAACTGGGATATGGTAG+AGG | + | chr7_4:690062-690081 | None:intergenic | 45.0% | |
| CTCTACCATATCCCAGTTGT+TGG | - | chr7_4:690060-690079 | Msa1134300:CDS | 45.0% | |
| ACCATATCCCAGTTGTTGGA+TGG | - | chr7_4:690064-690083 | Msa1134300:CDS | 45.0% | |
| CCATATCCCAGTTGTTGGAT+GGG | - | chr7_4:690065-690084 | Msa1134300:CDS | 45.0% | |
| CGTATAACCCATCCAACAAC+TGG | + | chr7_4:690075-690094 | None:intergenic | 45.0% | |
| ACAATCTCTGCCCATATGAC+AGG | - | chr7_4:690400-690419 | Msa1134300:intron | 45.0% | |
| TGATGTCCCACCTGTCATAT+GGG | + | chr7_4:690413-690432 | None:intergenic | 45.0% | |
| TTGATGTCCCACCTGTCATA+TGG | + | chr7_4:690414-690433 | None:intergenic | 45.0% | |
| ATGACAGGTGGGACATCAAA+TGG | - | chr7_4:690415-690434 | Msa1134300:intron | 45.0% | |
| TTAGTCGTCTACCAGCATGA+AGG | - | chr7_4:691007-691026 | Msa1134300:five_prime_UTR | 45.0% | |
| TGGTGTGTAAGCCAGCATTA+AGG | - | chr7_4:691116-691135 | Msa1134300:intron | 45.0% | |
| !!! | TTTTTAAAATTATTTATGAA+TGG | - | chr7_4:689770-689789 | Msa1134300:intron | 5.0% |
| GACAGCTTCAGACGAAAACG+GGG | + | chr7_4:687140-687159 | None:intergenic | 50.0% | |
| ! | TCGAACCGTCCGGTTTGATT+TGG | + | chr7_4:687837-687856 | None:intergenic | 50.0% |
| GTTCAATCAGTCGAACCGTC+CGG | + | chr7_4:687847-687866 | None:intergenic | 50.0% | |
| CGACTGATTGAACCGTAAGC+TGG | - | chr7_4:687854-687873 | Msa1134300:intron | 50.0% | |
| ! | GTAGTTGAACCATGACTCGG+AGG | - | chr7_4:687943-687962 | Msa1134300:intron | 50.0% |
| ACTCGGAGGTCTTCTTGGTT+CGG | - | chr7_4:687957-687976 | Msa1134300:intron | 50.0% | |
| ! | GCAGGGGTAGCAATTTTGCT+TGG | - | chr7_4:688300-688319 | Msa1134300:intron | 50.0% |
| ATGTCTGACGACATCCTACC+AGG | + | chr7_4:688470-688489 | None:intergenic | 50.0% | |
| ACTATGTAGCACCGCCACTT+CGG | + | chr7_4:688648-688667 | None:intergenic | 50.0% | |
| AGATCCCATCCCACTACAAG+AGG | + | chr7_4:688772-688791 | None:intergenic | 50.0% | |
| AAGTTTCCTGCAGTCCAAGG+AGG | - | chr7_4:689224-689243 | Msa1134300:intron | 50.0% | |
| CCCATCCAACAACTGGGATA+TGG | + | chr7_4:690068-690087 | None:intergenic | 50.0% | |
| TACAAAAAGAGGGAGAGGGC+AGG | + | chr7_4:690156-690175 | None:intergenic | 50.0% | |
| ATCTCTGCCCATATGACAGG+TGG | - | chr7_4:690403-690422 | Msa1134300:intron | 50.0% | |
| TCTCTGCCCATATGACAGGT+GGG | - | chr7_4:690404-690423 | Msa1134300:intron | 50.0% | |
| GGAGCTGCAAAAGAGCAGAA+GGG | + | chr7_4:690701-690720 | None:intergenic | 50.0% | |
| AGGAGCTGCAAAAGAGCAGA+AGG | + | chr7_4:690702-690721 | None:intergenic | 50.0% | |
| TAGGGGCTCGTAAAGCAGTT+TGG | - | chr7_4:690762-690781 | Msa1134300:intron | 50.0% | |
| CCAAGAAGACCTCCGAGTCA+TGG | + | chr7_4:687955-687974 | None:intergenic | 55.0% | |
| ! | CCATGACTCGGAGGTCTTCT+TGG | - | chr7_4:687952-687971 | Msa1134300:intron | 55.0% |
| !! | AGGTCTTCTTGGTTCGGTGC+CGG | - | chr7_4:687963-687982 | Msa1134300:intron | 55.0% |
| !!! | TCTTGGTTCGGTGCCGGTTT+TGG | - | chr7_4:687969-687988 | Msa1134300:intron | 55.0% |
| !! | GACCGTGGTTTGCTTGCTCT+AGG | - | chr7_4:688166-688185 | Msa1134300:intron | 55.0% |
| TGCTTGGTTGGCGTTCCATG+TGG | - | chr7_4:688316-688335 | Msa1134300:CDS | 55.0% | |
| !! | CACGTGTCGGTGTTAGACAC+TGG | + | chr7_4:688595-688614 | None:intergenic | 55.0% |
| GTTGTGTCCAGTGTCCGACA+CGG | + | chr7_4:688619-688638 | None:intergenic | 55.0% | |
| AACACCAGTGTCGTGTGCAG+TGG | - | chr7_4:689166-689185 | Msa1134300:intron | 55.0% | |
| ACACCAGTGTCGTGTGCAGT+GGG | - | chr7_4:689167-689186 | Msa1134300:intron | 55.0% | |
| TTTCCCACTGCACACGACAC+TGG | + | chr7_4:689173-689192 | None:intergenic | 55.0% | |
| AAAAGAGGGAGAGGGCAGGA+GGG | + | chr7_4:690152-690171 | None:intergenic | 55.0% | |
| AAAAAGAGGGAGAGGGCAGG+AGG | + | chr7_4:690153-690172 | None:intergenic | 55.0% | |
| TCAGGAGTGAGCCTTCATGC+TGG | + | chr7_4:691021-691040 | None:intergenic | 55.0% | |
| !! | CGGGGATATAATGGGCCGGT+GGG | + | chr7_4:687122-687141 | None:intergenic | 60.0% |
| !! | ACGGGGATATAATGGGCCGG+TGG | + | chr7_4:687123-687142 | None:intergenic | 60.0% |
| ! | CGGTTTCGTCCCGATTCGAG+CGG | - | chr7_4:687914-687933 | Msa1134300:intron | 60.0% |
| ACACCGACACGTGTCCGTGT+CGG | - | chr7_4:688602-688621 | Msa1134300:intron | 60.0% | |
| TGTCCGACACGGACACGTGT+CGG | + | chr7_4:688608-688627 | None:intergenic | 60.0% | |
| ACGCTACCTCCTTGGACTGC+AGG | + | chr7_4:689233-689252 | None:intergenic | 60.0% | |
| AAAGAGGGAGAGGGCAGGAG+GGG | + | chr7_4:690151-690170 | None:intergenic | 60.0% | |
| CACGTGTCCGTGTCGGACAC+TGG | - | chr7_4:688609-688628 | Msa1134300:intron | 65.0% | |
| AAGAGGGAGAGGGCAGGAGG+GGG | + | chr7_4:690150-690169 | None:intergenic | 65.0% | |
| AGAGGGCAGGAGGGGGAAGG+CGG | + | chr7_4:690143-690162 | None:intergenic | 70.0% | |
| GGGAGAGGGCAGGAGGGGGA+AGG | + | chr7_4:690146-690165 | None:intergenic | 75.0% | |
| ! | GGGCAGGAGGGGGAAGGCGG+AGG | + | chr7_4:690140-690159 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 687087 | 691319 | 687087 | ID=Msa1134300;Name=Msa1134300 |
| chr7_4 | mRNA | 687087 | 691319 | 687087 | ID=Msa1134300-mRNA-1;Parent=Msa1134300;Name=Msa1134300-mRNA-1;_AED=0.28;_eAED=0.28;_QI=158|0.83|0.85|1|0.66|0.71|7|0|126 |
| chr7_4 | exon | 687087 | 687094 | 687087 | ID=Msa1134300-mRNA-1:exon:274;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 688301 | 688374 | 688301 | ID=Msa1134300-mRNA-1:exon:273;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 688464 | 688561 | 688464 | ID=Msa1134300-mRNA-1:exon:272;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 690038 | 690118 | 690038 | ID=Msa1134300-mRNA-1:exon:271;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 690214 | 690305 | 690214 | ID=Msa1134300-mRNA-1:exon:270;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 690976 | 691034 | 690976 | ID=Msa1134300-mRNA-1:exon:269;Parent=Msa1134300-mRNA-1 |
| chr7_4 | exon | 691193 | 691319 | 691193 | ID=Msa1134300-mRNA-1:exon:268;Parent=Msa1134300-mRNA-1 |
| chr7_4 | five_prime_UTR | 691193 | 691319 | 691193 | ID=Msa1134300-mRNA-1:five_prime_utr;Parent=Msa1134300-mRNA-1 |
| chr7_4 | five_prime_UTR | 691004 | 691034 | 691004 | ID=Msa1134300-mRNA-1:five_prime_utr;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 690976 | 691003 | 690976 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 690214 | 690305 | 690214 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 690038 | 690118 | 690038 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 688464 | 688561 | 688464 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 688301 | 688374 | 688301 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| chr7_4 | CDS | 687087 | 687094 | 687087 | ID=Msa1134300-mRNA-1:cds;Parent=Msa1134300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
