AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376650 MtrunA17_Chr3g0145771 100.000 151 0 0 1 151 66 216 3.73e-111 314
Msa1376650 MtrunA17_Chr3g0139231 72.143 140 33 2 1 137 1 137 6.88e-71 211
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376650 AT1G02140.1 88.591 149 17 0 3 151 2 150 8.19e-99 281

Find 64 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCACTTGCTTCCATTGT+TGG 0.189002 tig0019825:-127842 Msa1376650:three_prime_UTR
TAGTTTCGAGTTTGTCTTCT+TGG 0.210632 tig0019825:-128010 Msa1376650:three_prime_UTR
GGTGGAACCAGGTTAATATT+AGG 0.283202 tig0019825:+127742 None:intergenic
TTCAAACTTCATTAGCTAAA+GGG 0.324358 tig0019825:+127961 None:intergenic
TCCTTTACTACTTCCAAGAT+TGG 0.348725 tig0019825:-128698 Msa1376650:CDS
TATTAAACTCTGGTGGTTGC+TGG 0.349843 tig0019825:-129175 Msa1376650:five_prime_UTR
TAAAAGATGCGAAGGCCTTC+AGG 0.353524 tig0019825:+128644 None:intergenic
AAAGGTTATCCATTCAAATC+AGG 0.354030 tig0019825:+127912 None:intergenic
CAGGAACTTGAGATTGTTAT+GGG 0.355218 tig0019825:-128734 Msa1376650:CDS
TCAGGAACTTGAGATTGTTA+TGG 0.374992 tig0019825:-128735 Msa1376650:CDS
GGCGGTTATTGTTGATCATC+AGG 0.409643 tig0019825:-129139 Msa1376650:five_prime_UTR
TTTCAAACTTCATTAGCTAA+AGG 0.412577 tig0019825:+127960 None:intergenic
CGACCAACACGGTCTGGTTC+AGG 0.414314 tig0019825:+128758 None:intergenic
GAGATACTACGTTGGTCATA+AGG 0.416637 tig0019825:-129072 Msa1376650:CDS
GTGGAACCAGGTTAATATTA+GGG 0.417421 tig0019825:+127743 None:intergenic
TATCATACAACACTAAATAC+TGG 0.420013 tig0019825:+127789 None:intergenic
ATCAACAAGAGAACCAATCT+TGG 0.427300 tig0019825:+128685 None:intergenic
TAATAGTGAACATCTTATAT+AGG 0.432174 tig0019825:+128031 None:intergenic
ACCAGACCGTGTTGGTCGTC+AGG 0.432239 tig0019825:-128753 Msa1376650:CDS
GTTGGTCATAAGGGTAAATT+CGG 0.435065 tig0019825:-129062 Msa1376650:CDS
AATATGTATCGGTGATGAAC+AGG 0.447090 tig0019825:-127939 Msa1376650:three_prime_UTR
TCGAGTTGGGCCTTTCCACC+AGG 0.453183 tig0019825:+129239 None:intergenic
TCCTGACGACCAACACGGTC+TGG 0.460919 tig0019825:+128752 None:intergenic
CAGACAGCATGCTCCAACAA+TGG 0.471628 tig0019825:+127829 None:intergenic
ATAAACCTCCTTACGAATGA+TGG 0.480860 tig0019825:+128962 None:intergenic
GGCTACAAAAGAAGCGGGCC+TGG 0.482296 tig0019825:-129257 None:intergenic
ACCAATCTTGGAAGTAGTAA+AGG 0.483775 tig0019825:+128697 None:intergenic
ATCAATCATGTGGTGGAACC+AGG 0.493929 tig0019825:+127731 None:intergenic
AGATACTACGTTGGTCATAA+GGG 0.498454 tig0019825:-129071 Msa1376650:CDS
TGAAGGAGGATGATAACAAC+TGG 0.499238 tig0019825:-128781 Msa1376650:CDS
CCACCACATGATTGATGACA+TGG 0.502437 tig0019825:-127724 Msa1376650:three_prime_UTR
AAGAAGCGGGCCTGGTGGAA+AGG 0.505575 tig0019825:-129249 Msa1376650:five_prime_UTR
TCAAACTTCATTAGCTAAAG+GGG 0.509998 tig0019825:+127962 None:intergenic
ACAGGAAAACCTGATTTGAA+TGG 0.511064 tig0019825:-127921 Msa1376650:three_prime_UTR
GTTGGAGCATGCTGTCTGTA+TGG 0.513636 tig0019825:-127824 Msa1376650:three_prime_UTR
GCATAACGAAGCTTACCATC+TGG 0.517649 tig0019825:+129011 None:intergenic
TGTTGATCATCAGGATCAGT+AGG 0.531236 tig0019825:-129130 Msa1376650:five_prime_UTR
GATCATCAGGATCAGTAGGA+TGG 0.543475 tig0019825:-129126 Msa1376650:exon
AGTAAGGGCTACAAAAGAAG+CGG 0.544722 tig0019825:-129263 None:intergenic
TCTACTCCCTAATATTAACC+TGG 0.548482 tig0019825:-127749 Msa1376650:three_prime_UTR
CGACACTCACGAAGAACAGC+AGG 0.558457 tig0019825:+128933 None:intergenic
TCAACAACAACAGATTATGA+AGG 0.558662 tig0019825:-128798 Msa1376650:intron
GAGTTTGAGTTCCGTCCAGA+TGG 0.565284 tig0019825:-129026 Msa1376650:CDS
CAAGATAGTAAAAGATGCGA+AGG 0.565769 tig0019825:+128636 None:intergenic
ATCATCAGGATCAGTAGGAT+GGG 0.566097 tig0019825:-129125 Msa1376650:exon
CGATACCATCATTCGTAAGG+AGG 0.567991 tig0019825:-128967 Msa1376650:CDS
ATGAAGTTTGAAATATGTAT+CGG 0.572232 tig0019825:-127950 Msa1376650:three_prime_UTR
AAAGCAAAGATCTGGTACAA+AGG 0.574547 tig0019825:+127894 None:intergenic
AAACGATACCATCATTCGTA+AGG 0.579284 tig0019825:-128970 Msa1376650:CDS
CTCGCAGTCATATTAAACTC+TGG 0.583050 tig0019825:-129185 Msa1376650:five_prime_UTR
GTAAGGGCTACAAAAGAAGC+GGG 0.590136 tig0019825:-129262 None:intergenic
CAAAGCAGTGCTGATCCTGA+AGG 0.593679 tig0019825:-128659 Msa1376650:CDS
CCATGTCATCAATCATGTGG+TGG 0.605732 tig0019825:+127724 None:intergenic
AACGAAGCTTACCATCTGGA+CGG 0.634567 tig0019825:+129015 None:intergenic
AATCCATGTCATCAATCATG+TGG 0.640325 tig0019825:+127721 None:intergenic
GTTGCTGGTTGAGAATCGAT+CGG 0.642873 tig0019825:-129160 Msa1376650:five_prime_UTR
ACAACAACAGATTATGAAGG+AGG 0.642882 tig0019825:-128795 Msa1376650:intron
CAAGTTCCTGACGACCAACA+CGG 0.649649 tig0019825:+128747 None:intergenic
TACAAAAGAAGCGGGCCTGG+TGG 0.662815 tig0019825:-129254 Msa1376650:five_prime_UTR
GCAGTCATATTAAACTCTGG+TGG 0.677409 tig0019825:-129182 Msa1376650:five_prime_UTR
TGGCCTGAACCAGACCGTGT+TGG 0.677826 tig0019825:-128761 Msa1376650:CDS
GCTGGTTGAGAATCGATCGG+CGG 0.699661 tig0019825:-129157 Msa1376650:five_prime_UTR
TCGTATTATTTCTGACAGCG+AGG 0.703758 tig0019825:-128910 Msa1376650:intron
AGGAACTTGAGATTGTTATG+GGG 0.708397 tig0019825:-128733 Msa1376650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTATAAGCAATAATAAAAA+AGG + tig0019825:128128-128147 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG + tig0019825:128471-128490 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG + tig0019825:128846-128865 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG - tig0019825:128847-128866 Msa1376650:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG - tig0019825:129069-129088 Msa1376650:CDS 15.0%
!! GTTATAAGCAATAATAAAAA+AGG + tig0019825:128128-128147 None:intergenic 15.0%
!! TAAAGTATATTTGTGAATTT+AGG + tig0019825:128471-128490 None:intergenic 15.0%
!! CAAAAATAATTATAATTAGC+AGG + tig0019825:128846-128865 None:intergenic 15.0%
!!! CTAATTATAATTATTTTTGC+AGG - tig0019825:128847-128866 Msa1376650:intron 15.0%
!!! ATCTTTGCTTTTTATATTTA+TGG - tig0019825:129069-129088 Msa1376650:CDS 15.0%
!! AATAATAAAAAAGGAAAAGG+GGG + tig0019825:128119-128138 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG + tig0019825:128120-128139 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG + tig0019825:128121-128140 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG + tig0019825:128122-128141 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG + tig0019825:128722-128741 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG + tig0019825:128723-128742 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG + tig0019825:128923-128942 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG - tig0019825:129001-129020 Msa1376650:CDS 20.0%
!! AAATATAAAAAGCAAAGATC+TGG + tig0019825:129068-129087 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG - tig0019825:129075-129094 Msa1376650:CDS 20.0%
!! AATAATAAAAAAGGAAAAGG+GGG + tig0019825:128119-128138 None:intergenic 20.0%
!! CAATAATAAAAAAGGAAAAG+GGG + tig0019825:128120-128139 None:intergenic 20.0%
!! GCAATAATAAAAAAGGAAAA+GGG + tig0019825:128121-128140 None:intergenic 20.0%
!! AGCAATAATAAAAAAGGAAA+AGG + tig0019825:128122-128141 None:intergenic 20.0%
!! AATACAGTCAAAAAATCATA+GGG + tig0019825:128722-128741 None:intergenic 20.0%
!! AAATACAGTCAAAAAATCAT+AGG + tig0019825:128723-128742 None:intergenic 20.0%
!! TAATAGTGAACATCTTATAT+AGG + tig0019825:128923-128942 None:intergenic 20.0%
!!! ATGAAGTTTGAAATATGTAT+CGG - tig0019825:129001-129020 Msa1376650:CDS 20.0%
!! AAATATAAAAAGCAAAGATC+TGG + tig0019825:129068-129087 None:intergenic 20.0%
!!! GCTTTTTATATTTATGGTTT+TGG - tig0019825:129075-129094 Msa1376650:CDS 20.0%
!! TAAATTCGGACATGAATTTT+TGG - tig0019825:127903-127922 Msa1376650:three_prime_UTR 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG + tig0019825:128118-128137 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG + tig0019825:128361-128380 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG + tig0019825:128406-128425 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG + tig0019825:128466-128485 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG - tig0019825:128476-128495 Msa1376650:intron 25.0%
! TCATATATTGATACTTTAGC+TGG - tig0019825:128501-128520 Msa1376650:intron 25.0%
! CATATATTGATACTTTAGCT+GGG - tig0019825:128502-128521 Msa1376650:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG - tig0019825:128526-128545 Msa1376650:intron 25.0%
! AAAAATAACAGCAAAGGAAT+GGG + tig0019825:128575-128594 None:intergenic 25.0%
! AAAAAATAACAGCAAAGGAA+TGG + tig0019825:128576-128595 None:intergenic 25.0%
! CAGTAAAAAAATAACAGCAA+AGG + tig0019825:128581-128600 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG + tig0019825:128721-128740 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG + tig0019825:128800-128819 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG + tig0019825:128801-128820 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG + tig0019825:128993-129012 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG + tig0019825:128994-129013 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG + tig0019825:129165-129184 None:intergenic 25.0%
!! TAAATTCGGACATGAATTTT+TGG - tig0019825:127903-127922 Msa1376650:three_prime_UTR 25.0%
! ATAATAAAAAAGGAAAAGGG+GGG + tig0019825:128118-128137 None:intergenic 25.0%
! TTTGGTATGCTTAAATTTGA+AGG + tig0019825:128361-128380 None:intergenic 25.0%
!! AATTTGAGTTAAGTTCATGA+AGG + tig0019825:128406-128425 None:intergenic 25.0%
! TATATTTGTGAATTTAGGCA+TGG + tig0019825:128466-128485 None:intergenic 25.0%
! CACAAATATACTTTAGACAA+TGG - tig0019825:128476-128495 Msa1376650:intron 25.0%
! TCATATATTGATACTTTAGC+TGG - tig0019825:128501-128520 Msa1376650:intron 25.0%
! CATATATTGATACTTTAGCT+GGG - tig0019825:128502-128521 Msa1376650:intron 25.0%
! TTTCAATATAGCTGATGTAA+TGG - tig0019825:128526-128545 Msa1376650:intron 25.0%
! AAAAATAACAGCAAAGGAAT+GGG + tig0019825:128575-128594 None:intergenic 25.0%
! AAAAAATAACAGCAAAGGAA+TGG + tig0019825:128576-128595 None:intergenic 25.0%
! CAGTAAAAAAATAACAGCAA+AGG + tig0019825:128581-128600 None:intergenic 25.0%
! ATACAGTCAAAAAATCATAG+GGG + tig0019825:128721-128740 None:intergenic 25.0%
! CATCAAACAAATCTTGTATT+GGG + tig0019825:128800-128819 None:intergenic 25.0%
! ACATCAAACAAATCTTGTAT+TGG + tig0019825:128801-128820 None:intergenic 25.0%
! TTCAAACTTCATTAGCTAAA+GGG + tig0019825:128993-129012 None:intergenic 25.0%
! TTTCAAACTTCATTAGCTAA+AGG + tig0019825:128994-129013 None:intergenic 25.0%
! TATCATACAACACTAAATAC+TGG + tig0019825:129165-129184 None:intergenic 25.0%
! TTTTACTTGAGATACTACGT+TGG - tig0019825:127871-127890 Msa1376650:three_prime_UTR 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG + tig0019825:127974-127993 None:intergenic 30.0%
TAATAAAAAAGGAAAAGGGG+GGG + tig0019825:128117-128136 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG - tig0019825:128153-128172 Msa1376650:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG - tig0019825:128321-128340 Msa1376650:intron 30.0%
TAACTCAAATTAAACTGACC+TGG - tig0019825:128415-128434 Msa1376650:intron 30.0%
AATGATATATGTAAGTTGCC+AGG + tig0019825:128436-128455 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG + tig0019825:128632-128651 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG + tig0019825:128633-128652 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG - tig0019825:128654-128673 Msa1376650:CDS 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG - tig0019825:128655-128674 Msa1376650:CDS 30.0%
TCAAACTTCATTAGCTAAAG+GGG + tig0019825:128992-129011 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG + tig0019825:129042-129061 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG - tig0019825:129248-129267 Msa1376650:five_prime_UTR 30.0%
! TTTTACTTGAGATACTACGT+TGG - tig0019825:127871-127890 Msa1376650:three_prime_UTR 30.0%
!! GATGGTATCGTTTTTGTAAT+TGG + tig0019825:127974-127993 None:intergenic 30.0%
TAATAAAAAAGGAAAAGGGG+GGG + tig0019825:128117-128136 None:intergenic 30.0%
TCAACAACAACAGATTATGA+AGG - tig0019825:128153-128172 Msa1376650:intron 30.0%
! CATCTTTTACTATCTTGTTC+AGG - tig0019825:128321-128340 Msa1376650:intron 30.0%
TAACTCAAATTAAACTGACC+TGG - tig0019825:128415-128434 Msa1376650:intron 30.0%
AATGATATATGTAAGTTGCC+AGG + tig0019825:128436-128455 None:intergenic 30.0%
ACAAAATGACAACACATCAT+GGG + tig0019825:128632-128651 None:intergenic 30.0%
AACAAAATGACAACACATCA+TGG + tig0019825:128633-128652 None:intergenic 30.0%
!!! TGCTTGTATTTTTTAGCCTT+TGG - tig0019825:128654-128673 Msa1376650:CDS 30.0%
!!! GCTTGTATTTTTTAGCCTTT+GGG - tig0019825:128655-128674 Msa1376650:CDS 30.0%
TCAAACTTCATTAGCTAAAG+GGG + tig0019825:128992-129011 None:intergenic 30.0%
AAAGGTTATCCATTCAAATC+AGG + tig0019825:129042-129061 None:intergenic 30.0%
!!! GGATTTTAAAATCAAGCTCT+TGG - tig0019825:129248-129267 Msa1376650:five_prime_UTR 30.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG + tig0019825:127728-127747 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG + tig0019825:127729-127748 None:intergenic 35.0%
AGATACTACGTTGGTCATAA+GGG - tig0019825:127880-127899 Msa1376650:three_prime_UTR 35.0%
GTTGGTCATAAGGGTAAATT+CGG - tig0019825:127889-127908 Msa1376650:three_prime_UTR 35.0%
AAACGATACCATCATTCGTA+AGG - tig0019825:127981-128000 Msa1376650:three_prime_UTR 35.0%
ATAAACCTCCTTACGAATGA+TGG + tig0019825:127992-128011 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG - tig0019825:128156-128175 Msa1376650:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG - tig0019825:128216-128235 Msa1376650:intron 35.0%
CAGGAACTTGAGATTGTTAT+GGG - tig0019825:128217-128236 Msa1376650:intron 35.0%
AGGAACTTGAGATTGTTATG+GGG - tig0019825:128218-128237 Msa1376650:intron 35.0%
TCCTTTACTACTTCCAAGAT+TGG - tig0019825:128253-128272 Msa1376650:intron 35.0%
ACCAATCTTGGAAGTAGTAA+AGG + tig0019825:128257-128276 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG + tig0019825:128269-128288 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG + tig0019825:128318-128337 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG + tig0019825:128379-128398 None:intergenic 35.0%
TGTGAATTTAGGCATGGTAA+TGG + tig0019825:128460-128479 None:intergenic 35.0%
! TTTACTGTATTTCTGCTGAG+TGG - tig0019825:128594-128613 Msa1376650:intron 35.0%
AAAATGACAACACATCATGG+GGG + tig0019825:128630-128649 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG + tig0019825:128631-128650 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG - tig0019825:128662-128681 Msa1376650:CDS 35.0%
AGTGGAAAAAATCACAGCAA+AGG + tig0019825:128690-128709 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG + tig0019825:128708-128727 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG + tig0019825:128789-128808 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG + tig0019825:128790-128809 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG + tig0019825:128833-128852 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG - tig0019825:128941-128960 Msa1376650:CDS 35.0%
! AATATGTATCGGTGATGAAC+AGG - tig0019825:129012-129031 Msa1376650:CDS 35.0%
! ACAGGAAAACCTGATTTGAA+TGG - tig0019825:129030-129049 Msa1376650:CDS 35.0%
AAAGCAAAGATCTGGTACAA+AGG + tig0019825:129060-129079 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG - tig0019825:129202-129221 Msa1376650:five_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG + tig0019825:129211-129230 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG + tig0019825:129233-129252 None:intergenic 35.0%
!! CTCTTTTTCTTGTTCGAGTT+GGG + tig0019825:127728-127747 None:intergenic 35.0%
! TCTCTTTTTCTTGTTCGAGT+TGG + tig0019825:127729-127748 None:intergenic 35.0%
AGATACTACGTTGGTCATAA+GGG - tig0019825:127880-127899 Msa1376650:three_prime_UTR 35.0%
GTTGGTCATAAGGGTAAATT+CGG - tig0019825:127889-127908 Msa1376650:three_prime_UTR 35.0%
AAACGATACCATCATTCGTA+AGG - tig0019825:127981-128000 Msa1376650:three_prime_UTR 35.0%
ATAAACCTCCTTACGAATGA+TGG + tig0019825:127992-128011 None:intergenic 35.0%
ACAACAACAGATTATGAAGG+AGG - tig0019825:128156-128175 Msa1376650:intron 35.0%
TCAGGAACTTGAGATTGTTA+TGG - tig0019825:128216-128235 Msa1376650:intron 35.0%
CAGGAACTTGAGATTGTTAT+GGG - tig0019825:128217-128236 Msa1376650:intron 35.0%
AGGAACTTGAGATTGTTATG+GGG - tig0019825:128218-128237 Msa1376650:intron 35.0%
TCCTTTACTACTTCCAAGAT+TGG - tig0019825:128253-128272 Msa1376650:intron 35.0%
ACCAATCTTGGAAGTAGTAA+AGG + tig0019825:128257-128276 None:intergenic 35.0%
ATCAACAAGAGAACCAATCT+TGG + tig0019825:128269-128288 None:intergenic 35.0%
CAAGATAGTAAAAGATGCGA+AGG + tig0019825:128318-128337 None:intergenic 35.0%
! TATCTGTGCTTAAGCAGTTT+TGG + tig0019825:128379-128398 None:intergenic 35.0%
TGTGAATTTAGGCATGGTAA+TGG + tig0019825:128460-128479 None:intergenic 35.0%
! TTTACTGTATTTCTGCTGAG+TGG - tig0019825:128594-128613 Msa1376650:intron 35.0%
AAAATGACAACACATCATGG+GGG + tig0019825:128630-128649 None:intergenic 35.0%
CAAAATGACAACACATCATG+GGG + tig0019825:128631-128650 None:intergenic 35.0%
!!! TTTTTTAGCCTTTGGGATCA+TGG - tig0019825:128662-128681 Msa1376650:CDS 35.0%
AGTGGAAAAAATCACAGCAA+AGG + tig0019825:128690-128709 None:intergenic 35.0%
ATCATAGGGGAATAACTAAG+TGG + tig0019825:128708-128727 None:intergenic 35.0%
TCTTGTATTGGGTGACTAAT+GGG + tig0019825:128789-128808 None:intergenic 35.0%
ATCTTGTATTGGGTGACTAA+TGG + tig0019825:128790-128809 None:intergenic 35.0%
AATTAGCAGGAATGAACCAA+AGG + tig0019825:128833-128852 None:intergenic 35.0%
!! TAGTTTCGAGTTTGTCTTCT+TGG - tig0019825:128941-128960 Msa1376650:CDS 35.0%
! AATATGTATCGGTGATGAAC+AGG - tig0019825:129012-129031 Msa1376650:CDS 35.0%
! ACAGGAAAACCTGATTTGAA+TGG - tig0019825:129030-129049 Msa1376650:CDS 35.0%
AAAGCAAAGATCTGGTACAA+AGG + tig0019825:129060-129079 None:intergenic 35.0%
TCTACTCCCTAATATTAACC+TGG - tig0019825:129202-129221 Msa1376650:five_prime_UTR 35.0%
GTGGAACCAGGTTAATATTA+GGG + tig0019825:129211-129230 None:intergenic 35.0%
AATCCATGTCATCAATCATG+TGG + tig0019825:129233-129252 None:intergenic 35.0%
CTCGCAGTCATATTAAACTC+TGG - tig0019825:127766-127785 Msa1376650:three_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG - tig0019825:127769-127788 Msa1376650:three_prime_UTR 40.0%
TATTAAACTCTGGTGGTTGC+TGG - tig0019825:127776-127795 Msa1376650:three_prime_UTR 40.0%
TGTTGATCATCAGGATCAGT+AGG - tig0019825:127821-127840 Msa1376650:three_prime_UTR 40.0%
ATCATCAGGATCAGTAGGAT+GGG - tig0019825:127826-127845 Msa1376650:three_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG - tig0019825:127879-127898 Msa1376650:three_prime_UTR 40.0%
!! TCGTATTATTTCTGACAGCG+AGG - tig0019825:128041-128060 Msa1376650:exon 40.0%
TGAAGGAGGATGATAACAAC+TGG - tig0019825:128170-128189 Msa1376650:intron 40.0%
TTGATGTCAGCTTATGCCTT+TGG - tig0019825:128814-128833 Msa1376650:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG - tig0019825:129109-129128 Msa1376650:CDS 40.0%
GGTGGAACCAGGTTAATATT+AGG + tig0019825:129212-129231 None:intergenic 40.0%
CTCGCAGTCATATTAAACTC+TGG - tig0019825:127766-127785 Msa1376650:three_prime_UTR 40.0%
GCAGTCATATTAAACTCTGG+TGG - tig0019825:127769-127788 Msa1376650:three_prime_UTR 40.0%
TATTAAACTCTGGTGGTTGC+TGG - tig0019825:127776-127795 Msa1376650:three_prime_UTR 40.0%
TGTTGATCATCAGGATCAGT+AGG - tig0019825:127821-127840 Msa1376650:three_prime_UTR 40.0%
ATCATCAGGATCAGTAGGAT+GGG - tig0019825:127826-127845 Msa1376650:three_prime_UTR 40.0%
GAGATACTACGTTGGTCATA+AGG - tig0019825:127879-127898 Msa1376650:three_prime_UTR 40.0%
!! TCGTATTATTTCTGACAGCG+AGG - tig0019825:128041-128060 Msa1376650:exon 40.0%
TGAAGGAGGATGATAACAAC+TGG - tig0019825:128170-128189 Msa1376650:intron 40.0%
TTGATGTCAGCTTATGCCTT+TGG - tig0019825:128814-128833 Msa1376650:intron 40.0%
CTTTCACTTGCTTCCATTGT+TGG - tig0019825:129109-129128 Msa1376650:CDS 40.0%
GGTGGAACCAGGTTAATATT+AGG + tig0019825:129212-129231 None:intergenic 40.0%
! GTTGCTGGTTGAGAATCGAT+CGG - tig0019825:127791-127810 Msa1376650:three_prime_UTR 45.0%
GGCGGTTATTGTTGATCATC+AGG - tig0019825:127812-127831 Msa1376650:three_prime_UTR 45.0%
GATCATCAGGATCAGTAGGA+TGG - tig0019825:127825-127844 Msa1376650:three_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG + tig0019825:127939-127958 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG + tig0019825:127943-127962 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG - tig0019825:127984-128003 Msa1376650:three_prime_UTR 45.0%
GAAAAGGGGGGGTGAAATTA+GGG + tig0019825:128106-128125 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG + tig0019825:128310-128329 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG + tig0019825:128673-128692 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG + tig0019825:129223-129242 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG + tig0019825:129230-129249 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG - tig0019825:129227-129246 Msa1376650:five_prime_UTR 45.0%
! GTTGCTGGTTGAGAATCGAT+CGG - tig0019825:127791-127810 Msa1376650:three_prime_UTR 45.0%
GGCGGTTATTGTTGATCATC+AGG - tig0019825:127812-127831 Msa1376650:three_prime_UTR 45.0%
GATCATCAGGATCAGTAGGA+TGG - tig0019825:127825-127844 Msa1376650:three_prime_UTR 45.0%
AACGAAGCTTACCATCTGGA+CGG + tig0019825:127939-127958 None:intergenic 45.0%
GCATAACGAAGCTTACCATC+TGG + tig0019825:127943-127962 None:intergenic 45.0%
CGATACCATCATTCGTAAGG+AGG - tig0019825:127984-128003 Msa1376650:three_prime_UTR 45.0%
GAAAAGGGGGGGTGAAATTA+GGG + tig0019825:128106-128125 None:intergenic 45.0%
TAAAAGATGCGAAGGCCTTC+AGG + tig0019825:128310-128329 None:intergenic 45.0%
CAAAGGAACCATGATCCCAA+AGG + tig0019825:128673-128692 None:intergenic 45.0%
! ATCAATCATGTGGTGGAACC+AGG + tig0019825:129223-129242 None:intergenic 45.0%
CCATGTCATCAATCATGTGG+TGG + tig0019825:129230-129249 None:intergenic 45.0%
! CCACCACATGATTGATGACA+TGG - tig0019825:129227-129246 Msa1376650:five_prime_UTR 45.0%
! GAGTTTGAGTTCCGTCCAGA+TGG - tig0019825:127925-127944 Msa1376650:three_prime_UTR 50.0%
GGGGGGTGAAATTAGGGTTA+GGG + tig0019825:128100-128119 None:intergenic 50.0%
GGAAAAGGGGGGGTGAAATT+AGG + tig0019825:128107-128126 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG + tig0019825:128207-128226 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG - tig0019825:128292-128311 Msa1376650:intron 50.0%
! GTATTGGGTGACTAATGGGC+AGG + tig0019825:128785-128804 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG + tig0019825:129125-129144 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG - tig0019825:129127-129146 Msa1376650:exon 50.0%
! GAGTTTGAGTTCCGTCCAGA+TGG - tig0019825:127925-127944 Msa1376650:three_prime_UTR 50.0%
GGGGGGTGAAATTAGGGTTA+GGG + tig0019825:128100-128119 None:intergenic 50.0%
GGAAAAGGGGGGGTGAAATT+AGG + tig0019825:128107-128126 None:intergenic 50.0%
CAAGTTCCTGACGACCAACA+CGG + tig0019825:128207-128226 None:intergenic 50.0%
!! CAAAGCAGTGCTGATCCTGA+AGG - tig0019825:128292-128311 Msa1376650:intron 50.0%
! GTATTGGGTGACTAATGGGC+AGG + tig0019825:128785-128804 None:intergenic 50.0%
CAGACAGCATGCTCCAACAA+TGG + tig0019825:129125-129144 None:intergenic 50.0%
GTTGGAGCATGCTGTCTGTA+TGG - tig0019825:129127-129146 Msa1376650:exon 50.0%
GCTGGTTGAGAATCGATCGG+CGG - tig0019825:127794-127813 Msa1376650:three_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG + tig0019825:128021-128040 None:intergenic 55.0%
GGGGGGGTGAAATTAGGGTT+AGG + tig0019825:128101-128120 None:intergenic 55.0%
GCTGGTTGAGAATCGATCGG+CGG - tig0019825:127794-127813 Msa1376650:three_prime_UTR 55.0%
CGACACTCACGAAGAACAGC+AGG + tig0019825:128021-128040 None:intergenic 55.0%
GGGGGGGTGAAATTAGGGTT+AGG + tig0019825:128101-128120 None:intergenic 55.0%
AAGAAGCGGGCCTGGTGGAA+AGG - tig0019825:127702-127721 Msa1376650:three_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG + tig0019825:127715-127734 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG - tig0019825:128190-128209 Msa1376650:intron 60.0%
! CGACCAACACGGTCTGGTTC+AGG + tig0019825:128196-128215 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG - tig0019825:128198-128217 Msa1376650:intron 60.0%
TCCTGACGACCAACACGGTC+TGG + tig0019825:128202-128221 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG + tig0019825:128781-128800 None:intergenic 60.0%
AAGAAGCGGGCCTGGTGGAA+AGG - tig0019825:127702-127721 Msa1376650:three_prime_UTR 60.0%
!! TCGAGTTGGGCCTTTCCACC+AGG + tig0019825:127715-127734 None:intergenic 60.0%
TGGCCTGAACCAGACCGTGT+TGG - tig0019825:128190-128209 Msa1376650:intron 60.0%
! CGACCAACACGGTCTGGTTC+AGG + tig0019825:128196-128215 None:intergenic 60.0%
! ACCAGACCGTGTTGGTCGTC+AGG - tig0019825:128198-128217 Msa1376650:intron 60.0%
TCCTGACGACCAACACGGTC+TGG + tig0019825:128202-128221 None:intergenic 60.0%
! TGGGTGACTAATGGGCAGGC+AGG + tig0019825:128781-128800 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 127699 129274 127699 ID=Msa1376650;Name=Msa1376650
tig0019825 mRNA 127699 129274 127699 ID=Msa1376650-mRNA-1;Parent=Msa1376650;Name=Msa1376650-mRNA-1;_AED=0.07;_eAED=0.07;_QI=145|1|1|1|1|1|3|346|151
tig0019825 exon 127699 128104 127699 ID=Msa1376650-mRNA-1:exon:5229;Parent=Msa1376650-mRNA-1
tig0019825 exon 128631 128807 128631 ID=Msa1376650-mRNA-1:exon:5228;Parent=Msa1376650-mRNA-1
tig0019825 exon 128911 129274 128911 ID=Msa1376650-mRNA-1:exon:5227;Parent=Msa1376650-mRNA-1
tig0019825 five_prime_UTR 129130 129274 129130 ID=Msa1376650-mRNA-1:five_prime_utr;Parent=Msa1376650-mRNA-1
tig0019825 CDS 128911 129129 128911 ID=Msa1376650-mRNA-1:cds;Parent=Msa1376650-mRNA-1
tig0019825 CDS 128631 128807 128631 ID=Msa1376650-mRNA-1:cds;Parent=Msa1376650-mRNA-1
tig0019825 CDS 128045 128104 128045 ID=Msa1376650-mRNA-1:cds;Parent=Msa1376650-mRNA-1
tig0019825 three_prime_UTR 127699 128044 127699 ID=Msa1376650-mRNA-1:three_prime_utr;Parent=Msa1376650-mRNA-1
Gene Sequence

>Msa1376650

ATGGGAAGCGAAGAAGAGAATGCAGAGTTTTACTTGAGATACTACGTTGGTCATAAGGGTAAATTCGGACATGAATTTTTGGAGTTTGAGTTCCGTCCAGATGGTAAGCTTCGTTATGCTAACAATTCCAATTACAAAAACGATACCATCATTCGTAAGGAGGTTTATCTTACTCCTGCTGTTCTTCGTGAGTGTCGTCGTATTATTTCTGACAGCGAGATTATGAAGGAGGATGATAACAACTGGCCTGAACCAGACCGTGTTGGTCGTCAGGAACTTGAGATTGTTATGGGGAATGAGCATATCTCCTTTACTACTTCCAAGATTGGTTCTCTTGTTGATGTTCAAAGCAGTGCTGATCCTGAAGGCCTTCGCATCTTTTACTATCTTGTTCAGGATTTGAAGTGCTTTGTCTTCTCTCTTATTTCACTTCACTTCAAGATCAAGCCTATATAA

Protein sequence

>Msa1376650

MGSEEENAEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTIIRKEVYLTPAVLRECRRIISDSEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSADPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI*