Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357560 | XP_003602022.1 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357560 | sp|Q39237|TGA1_ARATH | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357560 | G7J4F0 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1357560 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028620 | Msa1357560 | 0.806796 | 6.913653e-50 | -8.615850e-47 |
| Msa0032470 | Msa1357560 | 0.817802 | 2.729881e-52 | -8.615850e-47 |
| Msa0105410 | Msa1357560 | 0.804755 | 1.855342e-49 | -8.615850e-47 |
| Msa0106710 | Msa1357560 | 0.806459 | 8.141383e-50 | -8.615850e-47 |
| Msa0115790 | Msa1357560 | 0.801561 | 8.495300e-49 | -8.615850e-47 |
| Msa1357560 | Msa1392980 | 0.815617 | 8.435143e-52 | -8.615850e-47 |
| Msa1357560 | Msa1401990 | 0.822807 | 1.944035e-53 | -8.615850e-47 |
| Msa1357560 | Msa1442920 | 0.808830 | 2.554542e-50 | -8.615850e-47 |
| Msa1357560 | Msa1458680 | 0.804813 | 1.803879e-49 | -8.615850e-47 |
| Msa0646020 | Msa1357560 | 0.853532 | 2.245254e-61 | -8.615850e-47 |
| Msa0646420 | Msa1357560 | 0.844042 | 9.654711e-59 | -8.615850e-47 |
| Msa0657930 | Msa1357560 | -0.814098 | 1.831625e-51 | -8.615850e-47 |
| Msa0662220 | Msa1357560 | 0.844628 | 6.718440e-59 | -8.615850e-47 |
| Msa0686030 | Msa1357560 | 0.839585 | 1.450881e-57 | -8.615850e-47 |
| Msa0724170 | Msa1357560 | 0.802389 | 5.742879e-49 | -8.615850e-47 |
| Msa0122530 | Msa1357560 | 0.806586 | 7.653507e-50 | -8.615850e-47 |
| Msa0139550 | Msa1357560 | -0.802569 | 5.272427e-49 | -8.615850e-47 |
| Msa0217670 | Msa1357560 | 0.818160 | 2.266303e-52 | -8.615850e-47 |
| Msa0222150 | Msa1357560 | 0.834560 | 2.793564e-56 | -8.615850e-47 |
| Msa1236440 | Msa1357560 | 0.805824 | 1.107450e-49 | -8.615850e-47 |
| Msa1257750 | Msa1357560 | 0.825686 | 4.095222e-54 | -8.615850e-47 |
| Msa1271130 | Msa1357560 | 0.821336 | 4.262536e-53 | -8.615850e-47 |
| Msa1277670 | Msa1357560 | 0.801138 | 1.037132e-48 | -8.615850e-47 |
| Msa1329200 | Msa1357560 | 0.842238 | 2.922085e-58 | -8.615850e-47 |
| Msa0374220 | Msa1357560 | 0.994219 | 1.692544e-205 | -8.615850e-47 |
| Msa0469890 | Msa1357560 | 0.994763 | 5.411071e-210 | -8.615850e-47 |
| Msa0470880 | Msa1357560 | 0.800934 | 1.141460e-48 | -8.615850e-47 |
| Msa0992510 | Msa1357560 | 0.854139 | 1.502188e-61 | -8.615850e-47 |
| Msa1010530 | Msa1357560 | 0.800197 | 1.613430e-48 | -8.615850e-47 |
| Msa1036300 | Msa1357560 | 0.812782 | 3.565640e-51 | -8.615850e-47 |
| Msa1094190 | Msa1357560 | 0.803926 | 2.760619e-49 | -8.615850e-47 |
| Msa0287870 | Msa1357560 | 0.814389 | 1.579703e-51 | -8.615850e-47 |
| Msa1140540 | Msa1357560 | 0.818793 | 1.628619e-52 | -8.615850e-47 |
| Msa1160560 | Msa1357560 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa1196610 | Msa1357560 | -0.814098 | 1.831625e-51 | -8.615850e-47 |
| Msa0515340 | Msa1357560 | 0.887991 | 8.764568e-73 | -8.615850e-47 |
| Msa0527540 | Msa1357560 | 0.812814 | 3.507255e-51 | -8.615850e-47 |
| Msa0549950 | Msa1357560 | 0.843416 | 1.420374e-58 | -8.615850e-47 |
| Msa0878220 | Msa1357560 | 0.861507 | 9.772585e-64 | -8.615850e-47 |
| Msa0891590 | Msa1357560 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0943970 | Msa1357560 | 0.862163 | 6.156259e-64 | -8.615850e-47 |
| Msa0944020 | Msa1357560 | 0.864390 | 1.258201e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357560 | MtrunA17_Chr3g0124601 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Msa1357560 | MtrunA17_Chr8g0382861 | 68.839 | 353 | 102 | 4 | 12 | 363 | 13 | 358 | 1.69e-176 | 494 |
| Msa1357560 | MtrunA17_Chr8g0353501 | 56.269 | 327 | 125 | 4 | 43 | 361 | 150 | 466 | 3.41e-117 | 347 |
| Msa1357560 | MtrunA17_Chr3g0115371 | 49.429 | 350 | 170 | 3 | 14 | 359 | 1 | 347 | 4.49e-116 | 341 |
| Msa1357560 | MtrunA17_Chr7g0256211 | 58.667 | 300 | 111 | 3 | 70 | 361 | 158 | 452 | 9.80e-113 | 335 |
| Msa1357560 | MtrunA17_Chr5g0424861 | 49.716 | 352 | 165 | 4 | 14 | 358 | 1 | 347 | 2.04e-111 | 329 |
| Msa1357560 | MtrunA17_Chr5g0422771 | 55.556 | 306 | 124 | 3 | 64 | 361 | 163 | 464 | 6.36e-110 | 329 |
| Msa1357560 | MtrunA17_Chr2g0321431 | 54.795 | 292 | 120 | 4 | 73 | 361 | 187 | 469 | 6.63e-109 | 327 |
| Msa1357560 | MtrunA17_Chr1g0210151 | 55.401 | 287 | 124 | 2 | 79 | 361 | 54 | 340 | 1.27e-105 | 313 |
| Msa1357560 | MtrunA17_Chr1g0174701 | 52.117 | 307 | 138 | 3 | 64 | 361 | 200 | 506 | 1.18e-103 | 314 |
| Msa1357560 | MtrunA17_Chr4g0026401 | 46.991 | 349 | 155 | 6 | 30 | 361 | 126 | 461 | 1.79e-103 | 313 |
| Msa1357560 | MtrunA17_Chr7g0258321 | 50.321 | 312 | 148 | 2 | 57 | 361 | 152 | 463 | 6.77e-103 | 311 |
| Msa1357560 | MtrunA17_Chr5g0424851 | 53.704 | 216 | 99 | 1 | 144 | 358 | 7 | 222 | 2.16e-75 | 239 |
| Msa1357560 | MtrunA17_Chr5g0424851 | 53.960 | 202 | 93 | 0 | 148 | 349 | 225 | 426 | 6.67e-72 | 230 |
| Msa1357560 | MtrunA17_Chr3g0093451 | 57.669 | 163 | 58 | 3 | 82 | 235 | 49 | 209 | 1.32e-59 | 191 |
| Msa1357560 | MtrunA17_Chr1g0196951 | 38.806 | 201 | 98 | 5 | 160 | 354 | 59 | 240 | 7.16e-34 | 125 |
| Msa1357560 | MtrunA17_Chr8g0384821 | 25.957 | 235 | 139 | 5 | 150 | 349 | 14 | 248 | 7.80e-16 | 76.6 |
| Msa1357560 | MtrunA17_Chr7g0242651 | 24.651 | 215 | 152 | 5 | 147 | 351 | 5 | 219 | 1.24e-14 | 72.8 |
| Msa1357560 | MtrunA17_Chr2g0315631 | 23.182 | 220 | 135 | 3 | 151 | 350 | 4 | 209 | 2.09e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1357560 | AT5G65210.5 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G65210.7 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G65210.3 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G65210.1 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G65210.2 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G65210.4 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa1357560 | AT5G10030.5 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa1357560 | AT5G10030.3 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa1357560 | AT5G10030.1 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa1357560 | AT5G10030.4 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa1357560 | AT5G10030.2 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa1357560 | AT5G65210.6 | 73.064 | 297 | 78 | 1 | 69 | 363 | 2 | 298 | 1.67e-160 | 452 |
| Msa1357560 | AT1G77920.1 | 56.764 | 377 | 136 | 7 | 2 | 363 | 4 | 368 | 8.89e-143 | 409 |
| Msa1357560 | AT1G22070.1 | 56.557 | 366 | 143 | 4 | 12 | 361 | 17 | 382 | 1.93e-135 | 391 |
| Msa1357560 | AT5G06950.2 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa1357560 | AT5G06950.4 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa1357560 | AT5G06950.1 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa1357560 | AT5G06950.5 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa1357560 | AT5G06950.3 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa1357560 | AT3G12250.6 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa1357560 | AT3G12250.2 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa1357560 | AT3G12250.7 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa1357560 | AT3G12250.1 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa1357560 | AT3G12250.3 | 55.305 | 311 | 129 | 2 | 57 | 361 | 18 | 324 | 1.93e-111 | 328 |
| Msa1357560 | AT3G12250.5 | 57.191 | 299 | 114 | 3 | 73 | 361 | 9 | 303 | 3.57e-111 | 327 |
| Msa1357560 | AT5G06960.3 | 58.824 | 289 | 109 | 2 | 79 | 361 | 26 | 310 | 8.14e-111 | 326 |
| Msa1357560 | AT5G06960.2 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa1357560 | AT5G06960.1 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa1357560 | AT3G12250.4 | 55.305 | 311 | 129 | 2 | 57 | 361 | 49 | 355 | 1.38e-110 | 327 |
| Msa1357560 | AT1G08320.2 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa1357560 | AT1G08320.5 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa1357560 | AT1G08320.1 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa1357560 | AT1G08320.4 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa1357560 | AT1G08320.3 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa1357560 | AT5G06839.1 | 49.538 | 325 | 147 | 4 | 52 | 361 | 93 | 415 | 4.68e-102 | 307 |
| Msa1357560 | AT5G06839.2 | 49.387 | 326 | 147 | 4 | 52 | 361 | 93 | 416 | 7.20e-102 | 307 |
| Msa1357560 | AT5G06839.3 | 52.685 | 298 | 126 | 3 | 79 | 361 | 161 | 458 | 1.13e-101 | 308 |
| Msa1357560 | AT1G68640.1 | 52.922 | 308 | 136 | 3 | 61 | 361 | 147 | 452 | 3.67e-99 | 301 |
| Msa1357560 | AT1G58330.1 | 26.126 | 222 | 151 | 4 | 143 | 351 | 2 | 223 | 1.04e-18 | 84.3 |
| Msa1357560 | AT3G14880.2 | 26.126 | 222 | 129 | 7 | 147 | 343 | 6 | 217 | 1.04e-12 | 67.4 |
| Msa1357560 | AT3G14880.1 | 25.328 | 229 | 129 | 7 | 147 | 343 | 6 | 224 | 7.70e-12 | 65.1 |
Find 110 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTAAATAAATTAATTT+TGG | 0.164639 | tig0016097:-9949 | Msa1357560:three_prime_UTR |
| AAGAGTGTTTGTAATGTTAT+TGG | 0.192356 | tig0016097:+13314 | None:intergenic |
| AGCTCGATGTTTGCTTGCTT+TGG | 0.213054 | tig0016097:-10225 | Msa1357560:CDS |
| TTGATTTAATTGCAGATTCT+TGG | 0.226068 | tig0016097:-10827 | Msa1357560:intron |
| AAAACTGCAGGGAATGTATA+TGG | 0.249625 | tig0016097:-11474 | Msa1357560:intron |
| CCTAAACCACACATTGTATA+TGG | 0.292874 | tig0016097:+10045 | None:intergenic |
| CAAGTCCGCCTCATCAATTA+AGG | 0.315142 | tig0016097:+12132 | None:intergenic |
| TTCTCATTTCCGAGATTTGC+CGG | 0.317139 | tig0016097:+11248 | None:intergenic |
| TTAATTGCAGTTTGCTATAG+AGG | 0.320466 | tig0016097:-12322 | Msa1357560:intron |
| GCAGCCTTTGAGATGGAGTA+TGG | 0.346430 | tig0016097:-11292 | Msa1357560:CDS |
| GCTCGATGTTTGCTTGCTTT+GGG | 0.348084 | tig0016097:-10224 | Msa1357560:CDS |
| CATGTTCTAACCTTATCAAT+AGG | 0.384759 | tig0016097:+11934 | None:intergenic |
| TCTGTCAATGGTTCAATCAT+TGG | 0.390810 | tig0016097:+10803 | None:intergenic |
| CCATATACAATGTGTGGTTT+AGG | 0.401655 | tig0016097:-10045 | Msa1357560:three_prime_UTR |
| AATATTATAGAAAGTTGAAA+TGG | 0.410564 | tig0016097:+13285 | None:intergenic |
| CATACTTGTTAGATGTTCCT+AGG | 0.414801 | tig0016097:+11974 | None:intergenic |
| CTTCTCCCCACATATTAATC+TGG | 0.429966 | tig0016097:+12191 | None:intergenic |
| CACATATTAATCTGGTGAAT+AGG | 0.436108 | tig0016097:+12199 | None:intergenic |
| TTTAACAGGCTGACCATCTT+CGG | 0.437689 | tig0016097:-10295 | Msa1357560:intron |
| AACAAGACTAAGCAGGTTCT+CGG | 0.440007 | tig0016097:+10150 | None:intergenic |
| ATTGGGTTGATGAGCAAAAC+CGG | 0.440031 | tig0016097:-11267 | Msa1357560:CDS |
| AATGTATATGGGTGGTGGGT+TGG | 0.443309 | tig0016097:-11462 | Msa1357560:CDS |
| ACAAGACTAAGCAGGTTCTC+GGG | 0.443620 | tig0016097:+10151 | None:intergenic |
| TTGTAATGTTATTGGAGAAT+GGG | 0.444379 | tig0016097:+13322 | None:intergenic |
| CTTGAAGTTTGATAGTAGTC+AGG | 0.454381 | tig0016097:-12113 | Msa1357560:intron |
| TTCGATAGATTTCAGCATAG+TGG | 0.456188 | tig0016097:+11164 | None:intergenic |
| AATCGTTGTTGCTCTGTCAA+TGG | 0.456266 | tig0016097:+10791 | None:intergenic |
| TCTTGTGAGCTTTGTGAACC+AGG | 0.458406 | tig0016097:-10606 | Msa1357560:intron |
| AGCTCAAAGCCCTCAGGCGT+TGG | 0.459290 | tig0016097:+10192 | None:intergenic |
| GAGCTCAGGATGCTGGTTGA+TGG | 0.463581 | tig0016097:-11196 | Msa1357560:CDS |
| TGAGATGGAGTATGGACATT+GGG | 0.465713 | tig0016097:-11284 | Msa1357560:CDS |
| CACAGTTTGTTTCCTCGAGA+AGG | 0.467650 | tig0016097:-12237 | Msa1357560:CDS |
| TTTGTAATGTTATTGGAGAA+TGG | 0.474133 | tig0016097:+13321 | None:intergenic |
| TATAGAAAGTTGAAATGGAT+GGG | 0.474395 | tig0016097:+13290 | None:intergenic |
| TGAGGGCTTTGAGCTCACTA+TGG | 0.474812 | tig0016097:-10184 | Msa1357560:CDS |
| TCGTTTGAAGTTAGTGCAGT+TGG | 0.476876 | tig0016097:-11632 | Msa1357560:CDS |
| TTTGCTGGACCTGTGAATCC+AGG | 0.482156 | tig0016097:-11422 | Msa1357560:intron |
| CGCCTCATCAATTAAGGGAA+TGG | 0.487369 | tig0016097:+12138 | None:intergenic |
| GTTTCTCCATGCCTTGTGAA+AGG | 0.488025 | tig0016097:+10723 | None:intergenic |
| GATGCTTCTCATGGTATCCT+AGG | 0.490549 | tig0016097:-11991 | Msa1357560:CDS |
| GCAAGGTTTCCTGCCGAAGA+TGG | 0.491320 | tig0016097:+10282 | None:intergenic |
| TTTCTCCATGCCTTGTGAAA+GGG | 0.491745 | tig0016097:+10724 | None:intergenic |
| AAGATAGCTGTAGCTTCTAA+AGG | 0.493814 | tig0016097:-13037 | Msa1357560:intron |
| AGCTAATAGACCTATTGATA+AGG | 0.501170 | tig0016097:-11944 | Msa1357560:intron |
| CTCGCTGATAGCGTAGCAGC+TGG | 0.502070 | tig0016097:-10689 | Msa1357560:CDS |
| CAGGGAATGTATATGGGTGG+TGG | 0.504131 | tig0016097:-11467 | Msa1357560:CDS |
| AAGTCCGCCTCATCAATTAA+GGG | 0.508625 | tig0016097:+12133 | None:intergenic |
| ATTGACAGAGCAACAACGAT+TGG | 0.518816 | tig0016097:-10789 | Msa1357560:CDS |
| TATGAGTCTCTCTTTGAAGA+TGG | 0.519256 | tig0016097:-13137 | Msa1357560:five_prime_UTR |
| ACAAACCAACCTGGATTCAC+AGG | 0.524884 | tig0016097:+11413 | None:intergenic |
| TCGCCCTTCTGAGCTTCTCA+AGG | 0.526161 | tig0016097:-11047 | Msa1357560:intron |
| TGACATAGAGCTCAGGATGC+TGG | 0.526532 | tig0016097:-11203 | Msa1357560:CDS |
| ACAGGCTGACCATCTTCGGC+AGG | 0.532331 | tig0016097:-10291 | Msa1357560:intron |
| TTATAGAAAGTTGAAATGGA+TGG | 0.532934 | tig0016097:+13289 | None:intergenic |
| CAGATTAATATGTGGGGAGA+AGG | 0.534968 | tig0016097:-12190 | Msa1357560:CDS |
| ATCACCTTGAGAAGCTCAGA+AGG | 0.537726 | tig0016097:+11043 | None:intergenic |
| TCCACAGATGGCTACTGCAA+TGG | 0.537758 | tig0016097:-10642 | Msa1357560:CDS |
| AGAATATTTCCAACGCCTGA+GGG | 0.537877 | tig0016097:-10201 | Msa1357560:CDS |
| AGGAATTGCAGCCTTTGAGA+TGG | 0.538267 | tig0016097:-11299 | Msa1357560:CDS |
| AAACTGCAGGGAATGTATAT+GGG | 0.538541 | tig0016097:-11473 | Msa1357560:intron |
| TGAGCAAAACCGGCAAATCT+CGG | 0.539595 | tig0016097:-11257 | Msa1357560:CDS |
| AGATGCCCTTTCACAAGGCA+TGG | 0.540096 | tig0016097:-10729 | Msa1357560:CDS |
| GTTGGTAACAAGATTTGAGC+GGG | 0.544320 | tig0016097:-13067 | Msa1357560:five_prime_UTR |
| GCTCGAACGTGTTAGACAGC+AGG | 0.550918 | tig0016097:-11602 | Msa1357560:intron |
| TATTCACCAGATTAATATGT+GGG | 0.557449 | tig0016097:-12197 | Msa1357560:CDS |
| TGTTCGCGACATTTGTTGCA+AGG | 0.557667 | tig0016097:+10265 | None:intergenic |
| TTGAGATGGAGTATGGACAT+TGG | 0.559206 | tig0016097:-11285 | Msa1357560:CDS |
| CTATTCACCAGATTAATATG+TGG | 0.559375 | tig0016097:-12198 | Msa1357560:CDS |
| ATAGTGAGCTCAAAGCCCTC+AGG | 0.562814 | tig0016097:+10186 | None:intergenic |
| GCAGCTGGACAATTCATTGA+AGG | 0.563520 | tig0016097:-10674 | Msa1357560:CDS |
| AGGGAATGTATATGGGTGGT+GGG | 0.568452 | tig0016097:-11466 | Msa1357560:CDS |
| GAGAATATTTCCAACGCCTG+AGG | 0.568747 | tig0016097:-10202 | Msa1357560:CDS |
| GGAGAAGGCTTCAAAAGTAA+TGG | 0.571903 | tig0016097:-12175 | Msa1357560:CDS |
| GACGGCGAATTCATGCTCAA+TGG | 0.573598 | tig0016097:+12262 | None:intergenic |
| TCTCCACAACAAAAGACTGC+AGG | 0.574821 | tig0016097:+10008 | None:intergenic |
| CTTGTTGACATGATTGTCCA+AGG | 0.580404 | tig0016097:+10756 | None:intergenic |
| TCCATTGCAGTAGCCATCTG+TGG | 0.581181 | tig0016097:+10641 | None:intergenic |
| ATCCATTCCCTTAATTGATG+AGG | 0.582525 | tig0016097:-12140 | Msa1357560:CDS |
| TGTAATGTTATTGGAGAATG+GGG | 0.582747 | tig0016097:+13323 | None:intergenic |
| AATATGAAACGTGATGAGTA+TGG | 0.582987 | tig0016097:-10096 | Msa1357560:three_prime_UTR |
| TAGTCAGAGGATGCTTCTCA+TGG | 0.584672 | tig0016097:-12000 | Msa1357560:CDS |
| CGATTGGATATCGATAACCT+TGG | 0.584683 | tig0016097:-10773 | Msa1357560:CDS |
| AGGAACTTATATTCCACAGA+TGG | 0.586141 | tig0016097:-10654 | Msa1357560:CDS |
| ATTGAAGACTGATTTAATTG+CGG | 0.586307 | tig0016097:-12296 | Msa1357560:five_prime_UTR |
| CATTCCCTTAATTGATGAGG+CGG | 0.591538 | tig0016097:-12137 | Msa1357560:CDS |
| GTATTAGTGACATAGAGCTC+AGG | 0.591773 | tig0016097:-11210 | Msa1357560:CDS |
| TATTGGAGAATGGGGAGTGG+TGG | 0.592334 | tig0016097:+13331 | None:intergenic |
| ATAGAAAGTTGAAATGGATG+GGG | 0.597213 | tig0016097:+13291 | None:intergenic |
| CTCAAATCTTGTTACCAACA+TGG | 0.598716 | tig0016097:+13071 | None:intergenic |
| AAATTAGTCTGTGTGAAAGT+TGG | 0.599465 | tig0016097:-9879 | Msa1357560:three_prime_UTR |
| ATTGGTCATCATCACCATGT+TGG | 0.602722 | tig0016097:-13085 | Msa1357560:five_prime_UTR |
| TGTTATTGGAGAATGGGGAG+TGG | 0.606277 | tig0016097:+13328 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.607214 | tig0016097:-10734 | Msa1357560:CDS |
| TCAAAACCATATACAATGTG+TGG | 0.611088 | tig0016097:-10051 | Msa1357560:three_prime_UTR |
| GTCTTGCAACAAGACTAAGC+AGG | 0.618652 | tig0016097:+10143 | None:intergenic |
| CAAGACTAAGCAGGTTCTCG+GGG | 0.624393 | tig0016097:+10152 | None:intergenic |
| GCAAACATCGAGCTGACTGA+CGG | 0.633030 | tig0016097:+10234 | None:intergenic |
| GATTAAATATGCAGATACAA+AGG | 0.638966 | tig0016097:-11825 | Msa1357560:intron |
| GAGGAAACAAACTGTGCGGA+CGG | 0.640938 | tig0016097:+12244 | None:intergenic |
| ATGTCCATACTCCATCTCAA+AGG | 0.641308 | tig0016097:+11288 | None:intergenic |
| TTTATGTGATGTCCGGCATG+TGG | 0.642596 | tig0016097:-11111 | Msa1357560:CDS |
| ATACACACTCATCCTTCTCG+AGG | 0.650671 | tig0016097:+12225 | None:intergenic |
| TGTTGGTAACAAGATTTGAG+CGG | 0.659293 | tig0016097:-13068 | Msa1357560:five_prime_UTR |
| CACAAGGCATGGAGAAACTG+CGG | 0.659798 | tig0016097:-10718 | Msa1357560:CDS |
| TCACCTTGAGAAGCTCAGAA+GGG | 0.664994 | tig0016097:+11044 | None:intergenic |
| CTGCAGGGAATGTATATGGG+TGG | 0.681880 | tig0016097:-11470 | Msa1357560:intron |
| ATTCACCAGATTAATATGTG+GGG | 0.681960 | tig0016097:-12196 | Msa1357560:CDS |
| GTCCGGCATGTGGAAAACAA+CGG | 0.755517 | tig0016097:-11101 | Msa1357560:CDS |
| TCTCGAGGAAACAAACTGTG+CGG | 0.757278 | tig0016097:+12240 | None:intergenic |
| AGACTGATTTAATTGCGGCG+CGG | 0.780685 | tig0016097:-12291 | Msa1357560:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATATAAATATAAAAA+TGG | + | tig0016097:10043-10062 | None:intergenic | 0.0% |
| !!! | ATTAATTTTAGTACAAATAT+AGG | + | tig0016097:10507-10526 | None:intergenic | 10.0% |
| !! | TTTATTAAATTGAAAAGTAA+TGG | + | tig0016097:12681-12700 | None:intergenic | 10.0% |
| !!! | GTTTGTAAATAAATTAATTT+TGG | - | tig0016097:13288-13307 | Msa1357560:five_prime_UTR | 10.0% |
| !! | AATATTATAGAAAGTTGAAA+TGG | + | tig0016097:9955-9974 | None:intergenic | 15.0% |
| !! | AATATAAAAATGGAAATGAA+AGG | + | tig0016097:10033-10052 | None:intergenic | 15.0% |
| !! | ATTAATATAATTCTAATTCG+AGG | - | tig0016097:10286-10305 | Msa1357560:CDS | 15.0% |
| !! | TTTAATTCCATATTCAATTA+TGG | - | tig0016097:12347-12366 | Msa1357560:intron | 15.0% |
| !!! | GTATATGTTTATTTTATAAC+CGG | - | tig0016097:12833-12852 | Msa1357560:intron | 15.0% |
| !!! | TATATGTTTATTTTATAACC+GGG | - | tig0016097:12834-12853 | Msa1357560:intron | 15.0% |
| !!! | ATAAGATAGATATATGGTTT+TGG | + | tig0016097:10358-10377 | None:intergenic | 20.0% |
| !! | CATATCATAAGATAGATATA+TGG | + | tig0016097:10364-10383 | None:intergenic | 20.0% |
| !!! | TAACTGGTCTATAAAAAATT+TGG | - | tig0016097:10472-10491 | Msa1357560:intron | 20.0% |
| !!! | TACAATTTTATCATCAAATC+AGG | + | tig0016097:10544-10563 | None:intergenic | 20.0% |
| !!! | CAGAAAAAAAAGTACAAAAT+AGG | + | tig0016097:10611-10630 | None:intergenic | 20.0% |
| !!! | CTATTTTGTACTTTTTTTTC+TGG | - | tig0016097:10609-10628 | Msa1357560:CDS | 20.0% |
| !! | TTTATTGCCTATTAAAATCA+AGG | - | tig0016097:10661-10680 | Msa1357560:CDS | 20.0% |
| !!! | TGAAATTCCTTGATTTTAAT+AGG | + | tig0016097:10671-10690 | None:intergenic | 20.0% |
| !! | TACTAAAAAAGTTGAATAAG+TGG | - | tig0016097:10706-10725 | Msa1357560:CDS | 20.0% |
| !! | TATAAAACATGAATCCAATT+TGG | + | tig0016097:11212-11231 | None:intergenic | 20.0% |
| !! | GACAAATTTATAATGTAGTA+TGG | - | tig0016097:12373-12392 | Msa1357560:intron | 20.0% |
| !! | AAATTTATAATGTAGTATGG+TGG | - | tig0016097:12376-12395 | Msa1357560:intron | 20.0% |
| !! | AGTTAAATATGTGATTCTAA+TGG | + | tig0016097:12912-12931 | None:intergenic | 20.0% |
| ! | TTGTAATGTTATTGGAGAAT+GGG | + | tig0016097:9918-9937 | None:intergenic | 25.0% |
| ! | TTTGTAATGTTATTGGAGAA+TGG | + | tig0016097:9919-9938 | None:intergenic | 25.0% |
| !!! | AAGAGTGTTTGTAATGTTAT+TGG | + | tig0016097:9926-9945 | None:intergenic | 25.0% |
| ! | TATAGAAAGTTGAAATGGAT+GGG | + | tig0016097:9950-9969 | None:intergenic | 25.0% |
| ! | TTATAGAAAGTTGAAATGGA+TGG | + | tig0016097:9951-9970 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAGGTTGTTGTTT+TGG | + | tig0016097:10434-10453 | None:intergenic | 25.0% |
| ! | TAGAGTATAATCTGTTTCAT+AGG | - | tig0016097:10567-10586 | Msa1357560:intron | 25.0% |
| !! | ATTGAAGACTGATTTAATTG+CGG | - | tig0016097:10941-10960 | Msa1357560:intron | 25.0% |
| ! | TATTCACCAGATTAATATGT+GGG | - | tig0016097:11040-11059 | Msa1357560:intron | 25.0% |
| ! | ATTCTGCTTATTAACCAAAT+TGG | - | tig0016097:11195-11214 | Msa1357560:CDS | 25.0% |
| ! | GAACATGAAGAATTTGTATT+CGG | - | tig0016097:11319-11338 | Msa1357560:intron | 25.0% |
| ! | GATTAAATATGCAGATACAA+AGG | - | tig0016097:11412-11431 | Msa1357560:intron | 25.0% |
| !! | TCTAATAATATGTGTTTTGC+TGG | - | tig0016097:11800-11819 | Msa1357560:CDS | 25.0% |
| ! | TTGATTTAATTGCAGATTCT+TGG | - | tig0016097:12410-12429 | Msa1357560:intron | 25.0% |
| ! | GATAATAAGTTAGTGACAAA+TGG | + | tig0016097:12755-12774 | None:intergenic | 25.0% |
| ! | AAACATACATGATTTGATCA+CGG | + | tig0016097:12797-12816 | None:intergenic | 25.0% |
| !! | ATTTTGGATGCATGTATATT+TGG | - | tig0016097:13304-13323 | Msa1357560:five_prime_UTR | 25.0% |
| !! | GAAATGTGTATTTTTGTGCT+TGG | + | tig0016097:9884-9903 | None:intergenic | 30.0% |
| TGTAATGTTATTGGAGAATG+GGG | + | tig0016097:9917-9936 | None:intergenic | 30.0% | |
| ATAGAAAGTTGAAATGGATG+GGG | + | tig0016097:9949-9968 | None:intergenic | 30.0% | |
| ATTCTAATTCGAGGAAAACA+AGG | - | tig0016097:10295-10314 | Msa1357560:intron | 30.0% | |
| AGGAAAACAAGGAAACATAA+CGG | - | tig0016097:10306-10325 | Msa1357560:intron | 30.0% | |
| CAATCAAAGACAAAAGACAA+AGG | + | tig0016097:10411-10430 | None:intergenic | 30.0% | |
| !!! | ACCTTTTTTTTGTCAGAGAA+AGG | - | tig0016097:10442-10461 | Msa1357560:intron | 30.0% |
| TCCTTTCTCTGACAAAAAAA+AGG | + | tig0016097:10446-10465 | None:intergenic | 30.0% | |
| AGAGAAAGGAAAGAAATAAC+TGG | - | tig0016097:10456-10475 | Msa1357560:intron | 30.0% | |
| !!! | TTTTTTAGTAAGTGAGAGAG+AGG | + | tig0016097:10696-10715 | None:intergenic | 30.0% |
| AAGTTTCTGCAAAATCACAA+TGG | + | tig0016097:10839-10858 | None:intergenic | 30.0% | |
| AAAGTTCCTGCAGTATAAAA+GGG | + | tig0016097:10874-10893 | None:intergenic | 30.0% | |
| TAAAGTTCCTGCAGTATAAA+AGG | + | tig0016097:10875-10894 | None:intergenic | 30.0% | |
| TCTATAGCAAACTGCAATTA+AGG | + | tig0016097:10916-10935 | None:intergenic | 30.0% | |
| !! | TTAATTGCAGTTTGCTATAG+AGG | - | tig0016097:10915-10934 | Msa1357560:intron | 30.0% |
| CACATATTAATCTGGTGAAT+AGG | + | tig0016097:11041-11060 | None:intergenic | 30.0% | |
| CTATTCACCAGATTAATATG+TGG | - | tig0016097:11039-11058 | Msa1357560:intron | 30.0% | |
| ATTCACCAGATTAATATGTG+GGG | - | tig0016097:11041-11060 | Msa1357560:intron | 30.0% | |
| !! | CAAAGGTTGATTTGTTTCAT+CGG | - | tig0016097:11157-11176 | Msa1357560:CDS | 30.0% |
| ! | GTTTTATAATGCTTAGTCAG+AGG | - | tig0016097:11224-11243 | Msa1357560:CDS | 30.0% |
| AGCTAATAGACCTATTGATA+AGG | - | tig0016097:11293-11312 | Msa1357560:CDS | 30.0% | |
| CATGTTCTAACCTTATCAAT+AGG | + | tig0016097:11306-11325 | None:intergenic | 30.0% | |
| ! | GATACCATGCTTTCAAATTT+TGG | - | tig0016097:11362-11381 | Msa1357560:intron | 30.0% |
| ACATCCAAAATTTGAAAGCA+TGG | + | tig0016097:11369-11388 | None:intergenic | 30.0% | |
| !!! | TTAAAACCTTTTTTCGCAGA+CGG | + | tig0016097:11473-11492 | None:intergenic | 30.0% |
| TTTCTATCACTTTATGTCAC+CGG | - | tig0016097:11698-11717 | Msa1357560:intron | 30.0% | |
| !!! | GATGTTTTTTATGTGATGTC+CGG | - | tig0016097:12119-12138 | Msa1357560:CDS | 30.0% |
| ! | GAAAGATTTTTCTTGTGGAT+CGG | - | tig0016097:12161-12180 | Msa1357560:CDS | 30.0% |
| GTTATCCATAGAATGATAGA+AGG | - | tig0016097:12248-12267 | Msa1357560:CDS | 30.0% | |
| TGTCTTAATGTGAGAAAGAA+TGG | - | tig0016097:12291-12310 | Msa1357560:five_prime_UTR | 30.0% | |
| GTCTTAATGTGAGAAAGAAT+GGG | - | tig0016097:12292-12311 | Msa1357560:five_prime_UTR | 30.0% | |
| TGTCATGCCATAATTGAATA+TGG | + | tig0016097:12357-12376 | None:intergenic | 30.0% | |
| TAATGGTTATCAAGAAAGCT+AGG | + | tig0016097:12664-12683 | None:intergenic | 30.0% | |
| !!! | CAAGCTATTTTTTTCAGAAG+GGG | + | tig0016097:12888-12907 | None:intergenic | 30.0% |
| !!! | CCAAGCTATTTTTTTCAGAA+GGG | + | tig0016097:12889-12908 | None:intergenic | 30.0% |
| AATATGAAACGTGATGAGTA+TGG | - | tig0016097:13141-13160 | Msa1357560:five_prime_UTR | 30.0% | |
| !! | ATGAGTATGGTCATTTTCAT+TGG | - | tig0016097:13154-13173 | Msa1357560:five_prime_UTR | 30.0% |
| TCAAAACCATATACAATGTG+TGG | - | tig0016097:13186-13205 | Msa1357560:five_prime_UTR | 30.0% | |
| ! | AAATTAGTCTGTGTGAAAGT+TGG | - | tig0016097:13358-13377 | Msa1357560:five_prime_UTR | 30.0% |
| ! | TATGAGTCTCTCTTTGAAGA+TGG | - | tig0016097:10100-10119 | Msa1357560:three_prime_UTR | 35.0% |
| !!! | TCATTAGTTCTGCAGTTTTG+TGG | - | tig0016097:10128-10147 | Msa1357560:three_prime_UTR | 35.0% |
| CTCAAATCTTGTTACCAACA+TGG | + | tig0016097:10169-10188 | None:intergenic | 35.0% | |
| !! | TGTTGGTAACAAGATTTGAG+CGG | - | tig0016097:10169-10188 | Msa1357560:CDS | 35.0% |
| AAGATAGCTGTAGCTTCTAA+AGG | - | tig0016097:10200-10219 | Msa1357560:CDS | 35.0% | |
| ATCCAAACATGCACTAAGAA+GGG | + | tig0016097:10732-10751 | None:intergenic | 35.0% | |
| TATCCAAACATGCACTAAGA+AGG | + | tig0016097:10733-10752 | None:intergenic | 35.0% | |
| ! | ACTGTGAGTCACTATGATTT+TGG | - | tig0016097:10774-10793 | Msa1357560:CDS | 35.0% |
| TTGCAGCTTCAACAAAATCA+CGG | - | tig0016097:10810-10829 | Msa1357560:CDS | 35.0% | |
| ! | ATGTTACCCTTTTATACTGC+AGG | - | tig0016097:10865-10884 | Msa1357560:intron | 35.0% |
| ATCCATTCCCTTAATTGATG+AGG | - | tig0016097:11097-11116 | Msa1357560:CDS | 35.0% | |
| ! | CTTGAAGTTTGATAGTAGTC+AGG | - | tig0016097:11124-11143 | Msa1357560:CDS | 35.0% |
| AGTCAGGTAAATGTTTGCAA+AGG | - | tig0016097:11140-11159 | Msa1357560:CDS | 35.0% | |
| ! | CATACTTGTTAGATGTTCCT+AGG | + | tig0016097:11266-11285 | None:intergenic | 35.0% |
| GGTGACATAAAGTGATAGAA+AGG | + | tig0016097:11699-11718 | None:intergenic | 35.0% | |
| TTCCTTTCTCTAATACCTTG+AGG | - | tig0016097:11735-11754 | Msa1357560:intron | 35.0% | |
| AAAACTGCAGGGAATGTATA+TGG | - | tig0016097:11763-11782 | Msa1357560:intron | 35.0% | |
| AAACTGCAGGGAATGTATAT+GGG | - | tig0016097:11764-11783 | Msa1357560:intron | 35.0% | |
| AGTTCTTGCATTGCATTCTA+AGG | - | tig0016097:11901-11920 | Msa1357560:intron | 35.0% | |
| TTCGATAGATTTCAGCATAG+TGG | + | tig0016097:12076-12095 | None:intergenic | 35.0% | |
| TTAATGTGAGAAAGAATGGG+AGG | - | tig0016097:12295-12314 | Msa1357560:five_prime_UTR | 35.0% | |
| TCTGTCAATGGTTCAATCAT+TGG | + | tig0016097:12437-12456 | None:intergenic | 35.0% | |
| AGGAACTTATATTCCACAGA+TGG | - | tig0016097:12583-12602 | Msa1357560:intron | 35.0% | |
| TAGTATGACATGTTGCGAAA+AGG | + | tig0016097:12713-12732 | None:intergenic | 35.0% | |
| ATGTGTTGTAACAACAATCC+CGG | + | tig0016097:12855-12874 | None:intergenic | 35.0% | |
| ! | CCCTTCTGAAAAAAATAGCT+TGG | - | tig0016097:12886-12905 | Msa1357560:intron | 35.0% |
| !!! | GCCAAGCTATTTTTTTCAGA+AGG | + | tig0016097:12890-12909 | None:intergenic | 35.0% |
| AACTGTGATTCGTGTTTAAC+AGG | - | tig0016097:12928-12947 | Msa1357560:intron | 35.0% | |
| !!! | GTATATGGTTTTGACACTTG+TGG | + | tig0016097:13180-13199 | None:intergenic | 35.0% |
| CCTAAACCACACATTGTATA+TGG | + | tig0016097:13195-13214 | None:intergenic | 35.0% | |
| CCATATACAATGTGTGGTTT+AGG | - | tig0016097:13192-13211 | Msa1357560:five_prime_UTR | 35.0% | |
| ! | GACTGCTCATTTTATGCAAT+AGG | - | tig0016097:13264-13283 | Msa1357560:five_prime_UTR | 35.0% |
| !! | GTTCTGCAGTTTTGTGGTAT+TGG | - | tig0016097:10134-10153 | Msa1357560:three_prime_UTR | 40.0% |
| ATTGGTCATCATCACCATGT+TGG | - | tig0016097:10152-10171 | Msa1357560:exon | 40.0% | |
| !! | GTTGGTAACAAGATTTGAGC+GGG | - | tig0016097:10170-10189 | Msa1357560:CDS | 40.0% |
| GTTTGGATAGACTGTGAGAT+TGG | - | tig0016097:10744-10763 | Msa1357560:CDS | 40.0% | |
| CTTCTCCCCACATATTAATC+TGG | + | tig0016097:11049-11068 | None:intergenic | 40.0% | |
| CAGATTAATATGTGGGGAGA+AGG | - | tig0016097:11047-11066 | Msa1357560:intron | 40.0% | |
| GGAGAAGGCTTCAAAAGTAA+TGG | - | tig0016097:11062-11081 | Msa1357560:CDS | 40.0% | |
| CATTCCCTTAATTGATGAGG+CGG | - | tig0016097:11100-11119 | Msa1357560:CDS | 40.0% | |
| AAGTCCGCCTCATCAATTAA+GGG | + | tig0016097:11107-11126 | None:intergenic | 40.0% | |
| CATTTCTGACATTGCCTTAC+AGG | - | tig0016097:11557-11576 | Msa1357560:intron | 40.0% | |
| ! | TCGTTTGAAGTTAGTGCAGT+TGG | - | tig0016097:11605-11624 | Msa1357560:CDS | 40.0% |
| AGGAAAAAGAAAGACGATGC+CGG | + | tig0016097:11720-11739 | None:intergenic | 40.0% | |
| ! | TGCCTCAAGGTATTAGAGAA+AGG | + | tig0016097:11740-11759 | None:intergenic | 40.0% |
| TTGAGGCAACAAAAACTGCA+GGG | - | tig0016097:11752-11771 | Msa1357560:intron | 40.0% | |
| ATGTCCATACTCCATCTCAA+AGG | + | tig0016097:11952-11971 | None:intergenic | 40.0% | |
| TTGAGATGGAGTATGGACAT+TGG | - | tig0016097:11952-11971 | Msa1357560:CDS | 40.0% | |
| TGAGATGGAGTATGGACATT+GGG | - | tig0016097:11953-11972 | Msa1357560:CDS | 40.0% | |
| !! | ATTGGGTTGATGAGCAAAAC+CGG | - | tig0016097:11970-11989 | Msa1357560:CDS | 40.0% |
| TTCTCATTTCCGAGATTTGC+CGG | + | tig0016097:11992-12011 | None:intergenic | 40.0% | |
| GTATTAGTGACATAGAGCTC+AGG | - | tig0016097:12027-12046 | Msa1357560:intron | 40.0% | |
| ! | CGGCTGAAAGATTTTTCTTG+TGG | - | tig0016097:12156-12175 | Msa1357560:CDS | 40.0% |
| ! | AGATTTTTCTTGTGGATCGG+TGG | - | tig0016097:12164-12183 | Msa1357560:CDS | 40.0% |
| TCTCGCCTTCTATCATTCTA+TGG | + | tig0016097:12256-12275 | None:intergenic | 40.0% | |
| AATCGTTGTTGCTCTGTCAA+TGG | + | tig0016097:12449-12468 | None:intergenic | 40.0% | |
| ATTGACAGAGCAACAACGAT+TGG | - | tig0016097:12448-12467 | Msa1357560:intron | 40.0% | |
| CGATTGGATATCGATAACCT+TGG | - | tig0016097:12464-12483 | Msa1357560:intron | 40.0% | |
| CTTGTTGACATGATTGTCCA+AGG | + | tig0016097:12484-12503 | None:intergenic | 40.0% | |
| TTTCTCCATGCCTTGTGAAA+GGG | + | tig0016097:12516-12535 | None:intergenic | 40.0% | |
| AGAAAGCTAGGTACAATACC+TGG | + | tig0016097:12652-12671 | None:intergenic | 40.0% | |
| CATGATTTGATCACGGAGTT+CGG | + | tig0016097:12790-12809 | None:intergenic | 40.0% | |
| TTTAACAGGCTGACCATCTT+CGG | - | tig0016097:12942-12961 | Msa1357560:intron | 40.0% | |
| AGAATATTTCCAACGCCTGA+GGG | - | tig0016097:13036-13055 | Msa1357560:intron | 40.0% | |
| AACAAGACTAAGCAGGTTCT+CGG | + | tig0016097:13090-13109 | None:intergenic | 40.0% | |
| ! | TTTCCTGCAGTCTTTTGTTG+TGG | - | tig0016097:13226-13245 | Msa1357560:five_prime_UTR | 40.0% |
| TGTTATTGGAGAATGGGGAG+TGG | + | tig0016097:9912-9931 | None:intergenic | 45.0% | |
| ! | AGACTGATTTAATTGCGGCG+CGG | - | tig0016097:10946-10965 | Msa1357560:intron | 45.0% |
| TCTCGAGGAAACAAACTGTG+CGG | + | tig0016097:11000-11019 | None:intergenic | 45.0% | |
| ! | CACAGTTTGTTTCCTCGAGA+AGG | - | tig0016097:11000-11019 | Msa1357560:intron | 45.0% |
| ATACACACTCATCCTTCTCG+AGG | + | tig0016097:11015-11034 | None:intergenic | 45.0% | |
| CGCCTCATCAATTAAGGGAA+TGG | + | tig0016097:11102-11121 | None:intergenic | 45.0% | |
| CAAGTCCGCCTCATCAATTA+AGG | + | tig0016097:11108-11127 | None:intergenic | 45.0% | |
| TAGTCAGAGGATGCTTCTCA+TGG | - | tig0016097:11237-11256 | Msa1357560:CDS | 45.0% | |
| GATGCTTCTCATGGTATCCT+AGG | - | tig0016097:11246-11265 | Msa1357560:CDS | 45.0% | |
| TAAGAGCCGTCTGCGAAAAA+AGG | - | tig0016097:11464-11483 | Msa1357560:CDS | 45.0% | |
| ! | CTGCAGTTTTTGTTGCCTCA+AGG | + | tig0016097:11753-11772 | None:intergenic | 45.0% |
| CTTGAGGCAACAAAAACTGC+AGG | - | tig0016097:11751-11770 | Msa1357560:intron | 45.0% | |
| AGGGAATGTATATGGGTGGT+GGG | - | tig0016097:11771-11790 | Msa1357560:intron | 45.0% | |
| !! | AATGTATATGGGTGGTGGGT+TGG | - | tig0016097:11775-11794 | Msa1357560:CDS | 45.0% |
| ACAAACCAACCTGGATTCAC+AGG | + | tig0016097:11827-11846 | None:intergenic | 45.0% | |
| AGCATCTTCACAAACCAACC+TGG | + | tig0016097:11836-11855 | None:intergenic | 45.0% | |
| GCTGCAATTCCTACGGATAA+GGG | + | tig0016097:11930-11949 | None:intergenic | 45.0% | |
| CTCAAAGGCTGCAATTCCTA+CGG | + | tig0016097:11937-11956 | None:intergenic | 45.0% | |
| ! | AGGAATTGCAGCCTTTGAGA+TGG | - | tig0016097:11938-11957 | Msa1357560:intron | 45.0% |
| TGAGCAAAACCGGCAAATCT+CGG | - | tig0016097:11980-11999 | Msa1357560:CDS | 45.0% | |
| TTTATGTGATGTCCGGCATG+TGG | - | tig0016097:12126-12145 | Msa1357560:CDS | 45.0% | |
| TCACCTTGAGAAGCTCAGAA+GGG | + | tig0016097:12196-12215 | None:intergenic | 45.0% | |
| ATCACCTTGAGAAGCTCAGA+AGG | + | tig0016097:12197-12216 | None:intergenic | 45.0% | |
| GTTTCTCCATGCCTTGTGAA+AGG | + | tig0016097:12517-12536 | None:intergenic | 45.0% | |
| GCAGCTGGACAATTCATTGA+AGG | - | tig0016097:12563-12582 | Msa1357560:intron | 45.0% | |
| ! | TCTTGTGAGCTTTGTGAACC+AGG | - | tig0016097:12631-12650 | Msa1357560:intron | 45.0% |
| ! | TGTTCGCGACATTTGTTGCA+AGG | + | tig0016097:12975-12994 | None:intergenic | 45.0% |
| AGCTCGATGTTTGCTTGCTT+TGG | - | tig0016097:13012-13031 | Msa1357560:intron | 45.0% | |
| GCTCGATGTTTGCTTGCTTT+GGG | - | tig0016097:13013-13032 | Msa1357560:intron | 45.0% | |
| GAGAATATTTCCAACGCCTG+AGG | - | tig0016097:13035-13054 | Msa1357560:intron | 45.0% | |
| ACAAGACTAAGCAGGTTCTC+GGG | + | tig0016097:13089-13108 | None:intergenic | 45.0% | |
| GTCTTGCAACAAGACTAAGC+AGG | + | tig0016097:13097-13116 | None:intergenic | 45.0% | |
| TCTCCACAACAAAAGACTGC+AGG | + | tig0016097:13232-13251 | None:intergenic | 45.0% | |
| TATTGGAGAATGGGGAGTGG+TGG | + | tig0016097:9909-9928 | None:intergenic | 50.0% | |
| GGCCCTTCTTAGTGCATGTT+TGG | - | tig0016097:10727-10746 | Msa1357560:CDS | 50.0% | |
| GACGGCGAATTCATGCTCAA+TGG | + | tig0016097:10978-10997 | None:intergenic | 50.0% | |
| GAGGAAACAAACTGTGCGGA+CGG | + | tig0016097:10996-11015 | None:intergenic | 50.0% | |
| CTGCTGCACATAAGCCTGTA+AGG | + | tig0016097:11574-11593 | None:intergenic | 50.0% | |
| AACGTGTTAGACAGCAGGTG+TGG | - | tig0016097:11640-11659 | Msa1357560:CDS | 50.0% | |
| ACGTGTTAGACAGCAGGTGT+GGG | - | tig0016097:11641-11660 | Msa1357560:CDS | 50.0% | |
| CTGCAGGGAATGTATATGGG+TGG | - | tig0016097:11767-11786 | Msa1357560:intron | 50.0% | |
| CAGGGAATGTATATGGGTGG+TGG | - | tig0016097:11770-11789 | Msa1357560:intron | 50.0% | |
| TTTGCTGGACCTGTGAATCC+AGG | - | tig0016097:11815-11834 | Msa1357560:intron | 50.0% | |
| CTAAGGACACCCTTATCCGT+AGG | - | tig0016097:11918-11937 | Msa1357560:intron | 50.0% | |
| GGCTGCAATTCCTACGGATA+AGG | + | tig0016097:11931-11950 | None:intergenic | 50.0% | |
| !! | GCAGCCTTTGAGATGGAGTA+TGG | - | tig0016097:11945-11964 | Msa1357560:CDS | 50.0% |
| TGACATAGAGCTCAGGATGC+TGG | - | tig0016097:12034-12053 | Msa1357560:intron | 50.0% | |
| GTCCGGCATGTGGAAAACAA+CGG | - | tig0016097:12136-12155 | Msa1357560:CDS | 50.0% | |
| !! | AGCCGTTGTTTTCCACATGC+CGG | + | tig0016097:12141-12160 | None:intergenic | 50.0% |
| GCAGAAGATGCCCTTTCACA+AGG | - | tig0016097:12503-12522 | Msa1357560:intron | 50.0% | |
| AGATGCCCTTTCACAAGGCA+TGG | - | tig0016097:12508-12527 | Msa1357560:intron | 50.0% | |
| CACAAGGCATGGAGAAACTG+CGG | - | tig0016097:12519-12538 | Msa1357560:intron | 50.0% | |
| TCCACAGATGGCTACTGCAA+TGG | - | tig0016097:12595-12614 | Msa1357560:intron | 50.0% | |
| TCCATTGCAGTAGCCATCTG+TGG | + | tig0016097:12599-12618 | None:intergenic | 50.0% | |
| GCAAACATCGAGCTGACTGA+CGG | + | tig0016097:13006-13025 | None:intergenic | 50.0% | |
| ATAGTGAGCTCAAAGCCCTC+AGG | + | tig0016097:13054-13073 | None:intergenic | 50.0% | |
| !! | TGAGGGCTTTGAGCTCACTA+TGG | - | tig0016097:13053-13072 | Msa1357560:five_prime_UTR | 50.0% |
| CAAGACTAAGCAGGTTCTCG+GGG | + | tig0016097:13088-13107 | None:intergenic | 50.0% | |
| GCTCGAACGTGTTAGACAGC+AGG | - | tig0016097:11635-11654 | Msa1357560:CDS | 55.0% | |
| CGTGTTAGACAGCAGGTGTG+GGG | - | tig0016097:11642-11661 | Msa1357560:CDS | 55.0% | |
| CTGGACCTGTGAATCCAGGT+TGG | - | tig0016097:11819-11838 | Msa1357560:intron | 55.0% | |
| ! | GAGCTCAGGATGCTGGTTGA+TGG | - | tig0016097:12041-12060 | Msa1357560:intron | 55.0% |
| TCGCCCTTCTGAGCTTCTCA+AGG | - | tig0016097:12190-12209 | Msa1357560:CDS | 55.0% | |
| GCAAGGTTTCCTGCCGAAGA+TGG | + | tig0016097:12958-12977 | None:intergenic | 55.0% | |
| ! | CTCGCTGATAGCGTAGCAGC+TGG | - | tig0016097:12548-12567 | Msa1357560:intron | 60.0% |
| ACAGGCTGACCATCTTCGGC+AGG | - | tig0016097:12946-12965 | Msa1357560:intron | 60.0% | |
| AGCTCAAAGCCCTCAGGCGT+TGG | + | tig0016097:13048-13067 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0016097 | gene | 9844 | 13415 | 9844 | ID=Msa1357560;Name=Msa1357560 |
| tig0016097 | mRNA | 9844 | 13415 | 9844 | ID=Msa1357560-mRNA-1;Parent=Msa1357560;Name=Msa1357560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=437|1|1|1|0.87|0.88|9|313|363 |
| tig0016097 | exon | 9844 | 10309 | 9844 | ID=Msa1357560-mRNA-1:exon:10447;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 10607 | 10834 | 10607 | ID=Msa1357560-mRNA-1:exon:10446;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 11048 | 11319 | 11048 | ID=Msa1357560-mRNA-1:exon:10445;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 11423 | 11486 | 11423 | ID=Msa1357560-mRNA-1:exon:10444;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 11603 | 11680 | 11603 | ID=Msa1357560-mRNA-1:exon:10443;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 11774 | 11833 | 11774 | ID=Msa1357560-mRNA-1:exon:10442;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 11945 | 12019 | 11945 | ID=Msa1357560-mRNA-1:exon:10441;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 12114 | 12334 | 12114 | ID=Msa1357560-mRNA-1:exon:10440;Parent=Msa1357560-mRNA-1 |
| tig0016097 | exon | 13038 | 13415 | 13038 | ID=Msa1357560-mRNA-1:exon:10439;Parent=Msa1357560-mRNA-1 |
| tig0016097 | five_prime_UTR | 13038 | 13415 | 13038 | ID=Msa1357560-mRNA-1:five_prime_utr;Parent=Msa1357560-mRNA-1 |
| tig0016097 | five_prime_UTR | 12276 | 12334 | 12276 | ID=Msa1357560-mRNA-1:five_prime_utr;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 12114 | 12275 | 12114 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 11945 | 12019 | 11945 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 11774 | 11833 | 11774 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 11603 | 11680 | 11603 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 11423 | 11486 | 11423 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 11048 | 11319 | 11048 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 10607 | 10834 | 10607 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | CDS | 10157 | 10309 | 10157 | ID=Msa1357560-mRNA-1:cds;Parent=Msa1357560-mRNA-1 |
| tig0016097 | three_prime_UTR | 9844 | 10156 | 9844 | ID=Msa1357560-mRNA-1:three_prime_utr;Parent=Msa1357560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
