Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374220 | XP_003602022.1 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374220 | sp|Q39237|TGA1_ARATH | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374220 | G7J4F0 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0374220 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0374220 | 0.810725 | 9.992525e-51 | -8.615850e-47 |
| Msa0115790 | Msa0374220 | 0.802022 | 6.831996e-49 | -8.615850e-47 |
| Msa0122530 | Msa0374220 | 0.803298 | 3.726696e-49 | -8.615850e-47 |
| Msa0139550 | Msa0374220 | -0.800768 | 1.234486e-48 | -8.615850e-47 |
| Msa0217670 | Msa0374220 | 0.812211 | 4.751581e-51 | -8.615850e-47 |
| Msa0222150 | Msa0374220 | 0.837649 | 4.589176e-57 | -8.615850e-47 |
| Msa0374220 | Msa0469890 | 0.993102 | 1.820234e-197 | -8.615850e-47 |
| Msa0374220 | Msa0515340 | 0.882530 | 9.639884e-71 | -8.615850e-47 |
| Msa0374220 | Msa0527540 | 0.808833 | 2.549794e-50 | -8.615850e-47 |
| Msa0374220 | Msa0549950 | 0.833213 | 6.066771e-56 | -8.615850e-47 |
| Msa0374220 | Msa0646020 | 0.843859 | 1.081348e-58 | -8.615850e-47 |
| Msa0374220 | Msa0646420 | 0.834771 | 2.472458e-56 | -8.615850e-47 |
| Msa0374220 | Msa0657930 | -0.803719 | 3.048677e-49 | -8.615850e-47 |
| Msa0374220 | Msa0662220 | 0.834544 | 2.819320e-56 | -8.615850e-47 |
| Msa0374220 | Msa0686030 | 0.826021 | 3.409315e-54 | -8.615850e-47 |
| Msa0374220 | Msa0878220 | 0.859432 | 4.154515e-63 | -8.615850e-47 |
| Msa0374220 | Msa0891590 | 0.817487 | 3.214743e-52 | -8.615850e-47 |
| Msa0374220 | Msa0943970 | 0.858851 | 6.203923e-63 | -8.615850e-47 |
| Msa0374220 | Msa0944020 | 0.863550 | 2.297351e-64 | -8.615850e-47 |
| Msa0374220 | Msa0992510 | 0.855300 | 6.921581e-62 | -8.615850e-47 |
| Msa0374220 | Msa1036300 | 0.806128 | 9.560689e-50 | -8.615850e-47 |
| Msa0374220 | Msa1140540 | 0.816587 | 5.120723e-52 | -8.615850e-47 |
| Msa0374220 | Msa1160560 | 0.807798 | 4.238718e-50 | -8.615850e-47 |
| Msa0374220 | Msa1257750 | 0.831003 | 2.135117e-55 | -8.615850e-47 |
| Msa0374220 | Msa1271130 | 0.817924 | 2.561874e-52 | -8.615850e-47 |
| Msa0374220 | Msa1329200 | 0.845383 | 4.203967e-59 | -8.615850e-47 |
| Msa0374220 | Msa1357560 | 0.994219 | 1.692544e-205 | -8.615850e-47 |
| Msa0374220 | Msa1392980 | 0.820584 | 6.349461e-53 | -8.615850e-47 |
| Msa0374220 | Msa1401990 | 0.816286 | 5.981865e-52 | -8.615850e-47 |
| Msa0374220 | Msa1442920 | 0.807826 | 4.181619e-50 | -8.615850e-47 |
| Msa0263920 | Msa0374220 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa0287870 | Msa0374220 | 0.809243 | 2.083827e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374220 | MtrunA17_Chr3g0124601 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Msa0374220 | MtrunA17_Chr8g0382861 | 68.839 | 353 | 102 | 4 | 12 | 363 | 13 | 358 | 1.69e-176 | 494 |
| Msa0374220 | MtrunA17_Chr8g0353501 | 56.269 | 327 | 125 | 4 | 43 | 361 | 150 | 466 | 3.41e-117 | 347 |
| Msa0374220 | MtrunA17_Chr3g0115371 | 49.429 | 350 | 170 | 3 | 14 | 359 | 1 | 347 | 4.49e-116 | 341 |
| Msa0374220 | MtrunA17_Chr7g0256211 | 58.667 | 300 | 111 | 3 | 70 | 361 | 158 | 452 | 9.80e-113 | 335 |
| Msa0374220 | MtrunA17_Chr5g0424861 | 49.716 | 352 | 165 | 4 | 14 | 358 | 1 | 347 | 2.04e-111 | 329 |
| Msa0374220 | MtrunA17_Chr5g0422771 | 55.556 | 306 | 124 | 3 | 64 | 361 | 163 | 464 | 6.36e-110 | 329 |
| Msa0374220 | MtrunA17_Chr2g0321431 | 54.795 | 292 | 120 | 4 | 73 | 361 | 187 | 469 | 6.63e-109 | 327 |
| Msa0374220 | MtrunA17_Chr1g0210151 | 55.401 | 287 | 124 | 2 | 79 | 361 | 54 | 340 | 1.27e-105 | 313 |
| Msa0374220 | MtrunA17_Chr1g0174701 | 52.117 | 307 | 138 | 3 | 64 | 361 | 200 | 506 | 1.18e-103 | 314 |
| Msa0374220 | MtrunA17_Chr4g0026401 | 46.991 | 349 | 155 | 6 | 30 | 361 | 126 | 461 | 1.79e-103 | 313 |
| Msa0374220 | MtrunA17_Chr7g0258321 | 50.321 | 312 | 148 | 2 | 57 | 361 | 152 | 463 | 6.77e-103 | 311 |
| Msa0374220 | MtrunA17_Chr5g0424851 | 53.704 | 216 | 99 | 1 | 144 | 358 | 7 | 222 | 2.16e-75 | 239 |
| Msa0374220 | MtrunA17_Chr5g0424851 | 53.960 | 202 | 93 | 0 | 148 | 349 | 225 | 426 | 6.67e-72 | 230 |
| Msa0374220 | MtrunA17_Chr3g0093451 | 57.669 | 163 | 58 | 3 | 82 | 235 | 49 | 209 | 1.32e-59 | 191 |
| Msa0374220 | MtrunA17_Chr1g0196951 | 38.806 | 201 | 98 | 5 | 160 | 354 | 59 | 240 | 7.16e-34 | 125 |
| Msa0374220 | MtrunA17_Chr8g0384821 | 25.957 | 235 | 139 | 5 | 150 | 349 | 14 | 248 | 7.80e-16 | 76.6 |
| Msa0374220 | MtrunA17_Chr7g0242651 | 24.651 | 215 | 152 | 5 | 147 | 351 | 5 | 219 | 1.24e-14 | 72.8 |
| Msa0374220 | MtrunA17_Chr2g0315631 | 23.182 | 220 | 135 | 3 | 151 | 350 | 4 | 209 | 2.09e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374220 | AT5G65210.5 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G65210.7 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G65210.3 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G65210.1 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G65210.2 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G65210.4 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0374220 | AT5G10030.5 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0374220 | AT5G10030.3 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0374220 | AT5G10030.1 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0374220 | AT5G10030.4 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0374220 | AT5G10030.2 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0374220 | AT5G65210.6 | 73.064 | 297 | 78 | 1 | 69 | 363 | 2 | 298 | 1.67e-160 | 452 |
| Msa0374220 | AT1G77920.1 | 56.764 | 377 | 136 | 7 | 2 | 363 | 4 | 368 | 8.89e-143 | 409 |
| Msa0374220 | AT1G22070.1 | 56.557 | 366 | 143 | 4 | 12 | 361 | 17 | 382 | 1.93e-135 | 391 |
| Msa0374220 | AT5G06950.2 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0374220 | AT5G06950.4 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0374220 | AT5G06950.1 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0374220 | AT5G06950.5 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0374220 | AT5G06950.3 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0374220 | AT3G12250.6 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0374220 | AT3G12250.2 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0374220 | AT3G12250.7 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0374220 | AT3G12250.1 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0374220 | AT3G12250.3 | 55.305 | 311 | 129 | 2 | 57 | 361 | 18 | 324 | 1.93e-111 | 328 |
| Msa0374220 | AT3G12250.5 | 57.191 | 299 | 114 | 3 | 73 | 361 | 9 | 303 | 3.57e-111 | 327 |
| Msa0374220 | AT5G06960.3 | 58.824 | 289 | 109 | 2 | 79 | 361 | 26 | 310 | 8.14e-111 | 326 |
| Msa0374220 | AT5G06960.2 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa0374220 | AT5G06960.1 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa0374220 | AT3G12250.4 | 55.305 | 311 | 129 | 2 | 57 | 361 | 49 | 355 | 1.38e-110 | 327 |
| Msa0374220 | AT1G08320.2 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa0374220 | AT1G08320.5 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa0374220 | AT1G08320.1 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0374220 | AT1G08320.4 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0374220 | AT1G08320.3 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0374220 | AT5G06839.1 | 49.538 | 325 | 147 | 4 | 52 | 361 | 93 | 415 | 4.68e-102 | 307 |
| Msa0374220 | AT5G06839.2 | 49.387 | 326 | 147 | 4 | 52 | 361 | 93 | 416 | 7.20e-102 | 307 |
| Msa0374220 | AT5G06839.3 | 52.685 | 298 | 126 | 3 | 79 | 361 | 161 | 458 | 1.13e-101 | 308 |
| Msa0374220 | AT1G68640.1 | 52.922 | 308 | 136 | 3 | 61 | 361 | 147 | 452 | 3.67e-99 | 301 |
| Msa0374220 | AT1G58330.1 | 26.126 | 222 | 151 | 4 | 143 | 351 | 2 | 223 | 1.04e-18 | 84.3 |
| Msa0374220 | AT3G14880.2 | 26.126 | 222 | 129 | 7 | 147 | 343 | 6 | 217 | 1.04e-12 | 67.4 |
| Msa0374220 | AT3G14880.1 | 25.328 | 229 | 129 | 7 | 147 | 343 | 6 | 224 | 7.70e-12 | 65.1 |
Find 110 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTAAATAAATTAATTT+TGG | 0.164639 | 3_1:+73555581 | Msa0374220:three_prime_UTR |
| AAGAGTGTTTGTAATGTTAT+TGG | 0.192356 | 3_1:-73552227 | None:intergenic |
| AGCTCGATGTTTGCTTGCTT+TGG | 0.213054 | 3_1:+73555305 | Msa0374220:CDS |
| TTGATTTAATTGCAGATTCT+TGG | 0.226068 | 3_1:+73554703 | Msa0374220:intron |
| AAAACTGCAGGGAATGTATA+TGG | 0.249625 | 3_1:+73554056 | Msa0374220:intron |
| CCTAAACCACACATTGTATA+TGG | 0.292874 | 3_1:-73555485 | None:intergenic |
| CAAGTCCGCCTCATCAATTA+AGG | 0.315142 | 3_1:-73553398 | None:intergenic |
| TTCTCATTTCCGAGATTTGC+CGG | 0.317139 | 3_1:-73554282 | None:intergenic |
| TTAATTGCAGTTTGCTATAG+AGG | 0.320466 | 3_1:+73553208 | Msa0374220:intron |
| GCAGCCTTTGAGATGGAGTA+TGG | 0.346430 | 3_1:+73554238 | Msa0374220:CDS |
| GCTCGATGTTTGCTTGCTTT+GGG | 0.348084 | 3_1:+73555306 | Msa0374220:CDS |
| CATGTTCTAACCTTATCAAT+AGG | 0.384759 | 3_1:-73553596 | None:intergenic |
| TCTGTCAATGGTTCAATCAT+TGG | 0.390810 | 3_1:-73554727 | None:intergenic |
| CCATATACAATGTGTGGTTT+AGG | 0.401655 | 3_1:+73555485 | Msa0374220:three_prime_UTR |
| AATATTATAGAAAGTTGAAA+TGG | 0.410564 | 3_1:-73552256 | None:intergenic |
| CATACTTGTTAGATGTTCCT+AGG | 0.414801 | 3_1:-73553556 | None:intergenic |
| CTTCTCCCCACATATTAATC+TGG | 0.429966 | 3_1:-73553339 | None:intergenic |
| CACATATTAATCTGGTGAAT+AGG | 0.436108 | 3_1:-73553331 | None:intergenic |
| TTTAACAGGCTGACCATCTT+CGG | 0.437689 | 3_1:+73555235 | Msa0374220:intron |
| AACAAGACTAAGCAGGTTCT+CGG | 0.440007 | 3_1:-73555380 | None:intergenic |
| ATTGGGTTGATGAGCAAAAC+CGG | 0.440031 | 3_1:+73554263 | Msa0374220:CDS |
| AATGTATATGGGTGGTGGGT+TGG | 0.443309 | 3_1:+73554068 | Msa0374220:CDS |
| ACAAGACTAAGCAGGTTCTC+GGG | 0.443620 | 3_1:-73555379 | None:intergenic |
| TTGTAATGTTATTGGAGAAT+GGG | 0.444379 | 3_1:-73552219 | None:intergenic |
| CTTGAAGTTTGATAGTAGTC+AGG | 0.454381 | 3_1:+73553417 | Msa0374220:CDS |
| TTCGATAGATTTCAGCATAG+TGG | 0.456188 | 3_1:-73554366 | None:intergenic |
| AATCGTTGTTGCTCTGTCAA+TGG | 0.456266 | 3_1:-73554739 | None:intergenic |
| TCTTGTGAGCTTTGTGAACC+AGG | 0.458406 | 3_1:+73554924 | Msa0374220:CDS |
| AGCTCAAAGCCCTCAGGCGT+TGG | 0.459290 | 3_1:-73555338 | None:intergenic |
| GAGCTCAGGATGCTGGTTGA+TGG | 0.463581 | 3_1:+73554334 | Msa0374220:CDS |
| TGAGATGGAGTATGGACATT+GGG | 0.465713 | 3_1:+73554246 | Msa0374220:CDS |
| CACAGTTTGTTTCCTCGAGA+AGG | 0.467650 | 3_1:+73553293 | Msa0374220:CDS |
| TTTGTAATGTTATTGGAGAA+TGG | 0.474133 | 3_1:-73552220 | None:intergenic |
| TATAGAAAGTTGAAATGGAT+GGG | 0.474395 | 3_1:-73552251 | None:intergenic |
| TGAGGGCTTTGAGCTCACTA+TGG | 0.474812 | 3_1:+73555346 | Msa0374220:CDS |
| TCGTTTGAAGTTAGTGCAGT+TGG | 0.476876 | 3_1:+73553898 | Msa0374220:CDS |
| TTTGCTGGACCTGTGAATCC+AGG | 0.482156 | 3_1:+73554108 | Msa0374220:CDS |
| CGCCTCATCAATTAAGGGAA+TGG | 0.487369 | 3_1:-73553392 | None:intergenic |
| GTTTCTCCATGCCTTGTGAA+AGG | 0.488025 | 3_1:-73554807 | None:intergenic |
| GATGCTTCTCATGGTATCCT+AGG | 0.490549 | 3_1:+73553539 | Msa0374220:CDS |
| GCAAGGTTTCCTGCCGAAGA+TGG | 0.491320 | 3_1:-73555248 | None:intergenic |
| TTTCTCCATGCCTTGTGAAA+GGG | 0.491745 | 3_1:-73554806 | None:intergenic |
| AAGATAGCTGTAGCTTCTAA+AGG | 0.493814 | 3_1:+73552498 | Msa0374220:five_prime_UTR |
| AGCTAATAGACCTATTGATA+AGG | 0.501170 | 3_1:+73553586 | Msa0374220:CDS |
| CTCGCTGATAGCGTAGCAGC+TGG | 0.502070 | 3_1:+73554841 | Msa0374220:CDS |
| CAGGGAATGTATATGGGTGG+TGG | 0.504131 | 3_1:+73554063 | Msa0374220:intron |
| AAGTCCGCCTCATCAATTAA+GGG | 0.508625 | 3_1:-73553397 | None:intergenic |
| ATTGACAGAGCAACAACGAT+TGG | 0.518816 | 3_1:+73554741 | Msa0374220:CDS |
| TATGAGTCTCTCTTTGAAGA+TGG | 0.519256 | 3_1:+73552398 | Msa0374220:five_prime_UTR |
| ACAAACCAACCTGGATTCAC+AGG | 0.524884 | 3_1:-73554117 | None:intergenic |
| TCGCCCTTCTGAGCTTCTCA+AGG | 0.526161 | 3_1:+73554483 | Msa0374220:CDS |
| TGACATAGAGCTCAGGATGC+TGG | 0.526532 | 3_1:+73554327 | Msa0374220:CDS |
| ACAGGCTGACCATCTTCGGC+AGG | 0.532331 | 3_1:+73555239 | Msa0374220:intron |
| TTATAGAAAGTTGAAATGGA+TGG | 0.532934 | 3_1:-73552252 | None:intergenic |
| CAGATTAATATGTGGGGAGA+AGG | 0.534968 | 3_1:+73553340 | Msa0374220:CDS |
| ATCACCTTGAGAAGCTCAGA+AGG | 0.537726 | 3_1:-73554487 | None:intergenic |
| TCCACAGATGGCTACTGCAA+TGG | 0.537758 | 3_1:+73554888 | Msa0374220:CDS |
| AGAATATTTCCAACGCCTGA+GGG | 0.537877 | 3_1:+73555329 | Msa0374220:CDS |
| AGGAATTGCAGCCTTTGAGA+TGG | 0.538267 | 3_1:+73554231 | Msa0374220:intron |
| AAACTGCAGGGAATGTATAT+GGG | 0.538541 | 3_1:+73554057 | Msa0374220:intron |
| TGAGCAAAACCGGCAAATCT+CGG | 0.539595 | 3_1:+73554273 | Msa0374220:CDS |
| AGATGCCCTTTCACAAGGCA+TGG | 0.540096 | 3_1:+73554801 | Msa0374220:CDS |
| GTTGGTAACAAGATTTGAGC+GGG | 0.544320 | 3_1:+73552468 | Msa0374220:five_prime_UTR |
| GCTCGAACGTGTTAGACAGC+AGG | 0.550918 | 3_1:+73553928 | Msa0374220:CDS |
| TATTCACCAGATTAATATGT+GGG | 0.557449 | 3_1:+73553333 | Msa0374220:CDS |
| TGTTCGCGACATTTGTTGCA+AGG | 0.557667 | 3_1:-73555265 | None:intergenic |
| TTGAGATGGAGTATGGACAT+TGG | 0.559206 | 3_1:+73554245 | Msa0374220:CDS |
| CTATTCACCAGATTAATATG+TGG | 0.559375 | 3_1:+73553332 | Msa0374220:CDS |
| ATAGTGAGCTCAAAGCCCTC+AGG | 0.562814 | 3_1:-73555344 | None:intergenic |
| GCAGCTGGACAATTCATTGA+AGG | 0.563520 | 3_1:+73554856 | Msa0374220:CDS |
| AGGGAATGTATATGGGTGGT+GGG | 0.568452 | 3_1:+73554064 | Msa0374220:intron |
| GAGAATATTTCCAACGCCTG+AGG | 0.568747 | 3_1:+73555328 | Msa0374220:CDS |
| GGAGAAGGCTTCAAAAGTAA+TGG | 0.571903 | 3_1:+73553355 | Msa0374220:CDS |
| GACGGCGAATTCATGCTCAA+TGG | 0.573598 | 3_1:-73553268 | None:intergenic |
| TCTCCACAACAAAAGACTGC+AGG | 0.574821 | 3_1:-73555522 | None:intergenic |
| CTTGTTGACATGATTGTCCA+AGG | 0.580404 | 3_1:-73554774 | None:intergenic |
| TCCATTGCAGTAGCCATCTG+TGG | 0.581181 | 3_1:-73554889 | None:intergenic |
| ATCCATTCCCTTAATTGATG+AGG | 0.582525 | 3_1:+73553390 | Msa0374220:CDS |
| TGTAATGTTATTGGAGAATG+GGG | 0.582747 | 3_1:-73552218 | None:intergenic |
| AATATGAAACGTGATGAGTA+TGG | 0.582987 | 3_1:+73555434 | Msa0374220:three_prime_UTR |
| TAGTCAGAGGATGCTTCTCA+TGG | 0.584672 | 3_1:+73553530 | Msa0374220:intron |
| CGATTGGATATCGATAACCT+TGG | 0.584683 | 3_1:+73554757 | Msa0374220:CDS |
| AGGAACTTATATTCCACAGA+TGG | 0.586141 | 3_1:+73554876 | Msa0374220:CDS |
| ATTGAAGACTGATTTAATTG+CGG | 0.586307 | 3_1:+73553234 | Msa0374220:five_prime_UTR |
| CATTCCCTTAATTGATGAGG+CGG | 0.591538 | 3_1:+73553393 | Msa0374220:CDS |
| GTATTAGTGACATAGAGCTC+AGG | 0.591773 | 3_1:+73554320 | Msa0374220:CDS |
| TATTGGAGAATGGGGAGTGG+TGG | 0.592334 | 3_1:-73552210 | None:intergenic |
| ATAGAAAGTTGAAATGGATG+GGG | 0.597213 | 3_1:-73552250 | None:intergenic |
| CTCAAATCTTGTTACCAACA+TGG | 0.598716 | 3_1:-73552464 | None:intergenic |
| AAATTAGTCTGTGTGAAAGT+TGG | 0.599465 | 3_1:+73555651 | Msa0374220:three_prime_UTR |
| ATTGGTCATCATCACCATGT+TGG | 0.602722 | 3_1:+73552450 | Msa0374220:five_prime_UTR |
| TGTTATTGGAGAATGGGGAG+TGG | 0.606277 | 3_1:-73552213 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.607214 | 3_1:+73554796 | Msa0374220:CDS |
| TCAAAACCATATACAATGTG+TGG | 0.611088 | 3_1:+73555479 | Msa0374220:three_prime_UTR |
| GTCTTGCAACAAGACTAAGC+AGG | 0.618652 | 3_1:-73555387 | None:intergenic |
| CAAGACTAAGCAGGTTCTCG+GGG | 0.624393 | 3_1:-73555378 | None:intergenic |
| GCAAACATCGAGCTGACTGA+CGG | 0.633030 | 3_1:-73555296 | None:intergenic |
| GATTAAATATGCAGATACAA+AGG | 0.638966 | 3_1:+73553705 | Msa0374220:intron |
| GAGGAAACAAACTGTGCGGA+CGG | 0.640938 | 3_1:-73553286 | None:intergenic |
| ATGTCCATACTCCATCTCAA+AGG | 0.641308 | 3_1:-73554242 | None:intergenic |
| TTTATGTGATGTCCGGCATG+TGG | 0.642596 | 3_1:+73554419 | Msa0374220:CDS |
| ATACACACTCATCCTTCTCG+AGG | 0.650671 | 3_1:-73553305 | None:intergenic |
| TGTTGGTAACAAGATTTGAG+CGG | 0.659293 | 3_1:+73552467 | Msa0374220:five_prime_UTR |
| CACAAGGCATGGAGAAACTG+CGG | 0.659798 | 3_1:+73554812 | Msa0374220:CDS |
| TCACCTTGAGAAGCTCAGAA+GGG | 0.664994 | 3_1:-73554486 | None:intergenic |
| CTGCAGGGAATGTATATGGG+TGG | 0.681880 | 3_1:+73554060 | Msa0374220:intron |
| ATTCACCAGATTAATATGTG+GGG | 0.681960 | 3_1:+73553334 | Msa0374220:CDS |
| GTCCGGCATGTGGAAAACAA+CGG | 0.755517 | 3_1:+73554429 | Msa0374220:CDS |
| TCTCGAGGAAACAAACTGTG+CGG | 0.757278 | 3_1:-73553290 | None:intergenic |
| AGACTGATTTAATTGCGGCG+CGG | 0.780685 | 3_1:+73553239 | Msa0374220:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTACAATATAAATATAAAAA+TGG | - | chr3_1:73552347-73552366 | None:intergenic | 10.0% |
| !!! | ATTAATTTTAGTACAAATAT+AGG | - | chr3_1:73552805-73552824 | None:intergenic | 10.0% |
| !! | TTTATTAAATTGAAAAGTAA+TGG | - | chr3_1:73554974-73554993 | None:intergenic | 10.0% |
| !!! | GTTTGTAAATAAATTAATTT+TGG | + | chr3_1:73555581-73555600 | Msa0374220:three_prime_UTR | 10.0% |
| !! | AATATTATAGAAAGTTGAAA+TGG | - | chr3_1:73552259-73552278 | None:intergenic | 15.0% |
| !! | AATATAAAAATGGAAATGAA+AGG | - | chr3_1:73552337-73552356 | None:intergenic | 15.0% |
| !! | ATTAATATAATTCTAATTCG+AGG | + | chr3_1:73552584-73552603 | Msa0374220:intron | 15.0% |
| !!! | AAGAAAAAAAAGTACAAAAT+AGG | - | chr3_1:73552909-73552928 | None:intergenic | 15.0% |
| !! | TTTAATTCCATATTCAATTA+TGG | + | chr3_1:73554640-73554659 | Msa0374220:intron | 15.0% |
| !!! | GTATATGTTTATTTTATAAC+CGG | + | chr3_1:73555126-73555145 | Msa0374220:intron | 15.0% |
| !!! | TATATGTTTATTTTATAACC+GGG | + | chr3_1:73555127-73555146 | Msa0374220:intron | 15.0% |
| !!! | ATAAGATAGATATATGGTTT+TGG | - | chr3_1:73552656-73552675 | None:intergenic | 20.0% |
| !! | CATATCATAAGATAGATATA+TGG | - | chr3_1:73552662-73552681 | None:intergenic | 20.0% |
| !!! | TAACTGGTCTATAAAAAATT+TGG | + | chr3_1:73552770-73552789 | Msa0374220:intron | 20.0% |
| !!! | TACAATTTTATCATCAAATC+AGG | - | chr3_1:73552842-73552861 | None:intergenic | 20.0% |
| !!! | TTTTGTACTTTTTTTTCTTC+TGG | + | chr3_1:73552910-73552929 | Msa0374220:intron | 20.0% |
| !! | TTTATTGCCTATTAAAATCA+AGG | + | chr3_1:73552962-73552981 | Msa0374220:intron | 20.0% |
| !!! | TGAAATTCCTTGATTTTAAT+AGG | - | chr3_1:73552972-73552991 | None:intergenic | 20.0% |
| !! | TACTAAAAAAGTTGAATAAG+TGG | + | chr3_1:73553009-73553028 | Msa0374220:intron | 20.0% |
| !! | TATAAAACATGAATCCAATT+TGG | - | chr3_1:73553505-73553524 | None:intergenic | 20.0% |
| !! | GACAAATTTATAATGTAGTA+TGG | + | chr3_1:73554666-73554685 | Msa0374220:intron | 20.0% |
| !! | AAATTTATAATGTAGTATGG+TGG | + | chr3_1:73554669-73554688 | Msa0374220:intron | 20.0% |
| !! | AGTTAAATATGTGATTCTAA+TGG | - | chr3_1:73555205-73555224 | None:intergenic | 20.0% |
| ! | TTGTAATGTTATTGGAGAAT+GGG | - | chr3_1:73552222-73552241 | None:intergenic | 25.0% |
| ! | TTTGTAATGTTATTGGAGAA+TGG | - | chr3_1:73552223-73552242 | None:intergenic | 25.0% |
| !!! | AAGAGTGTTTGTAATGTTAT+TGG | - | chr3_1:73552230-73552249 | None:intergenic | 25.0% |
| ! | TATAGAAAGTTGAAATGGAT+GGG | - | chr3_1:73552254-73552273 | None:intergenic | 25.0% |
| ! | TTATAGAAAGTTGAAATGGA+TGG | - | chr3_1:73552255-73552274 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAGGTTGTTGTTT+TGG | - | chr3_1:73552732-73552751 | None:intergenic | 25.0% |
| ! | AGAGAAAGGAAAAAAATAAC+TGG | + | chr3_1:73552754-73552773 | Msa0374220:intron | 25.0% |
| ! | TAGAGTATAATCTGTTTCAT+AGG | + | chr3_1:73552865-73552884 | Msa0374220:intron | 25.0% |
| !! | ATTGAAGACTGATTTAATTG+CGG | + | chr3_1:73553234-73553253 | Msa0374220:five_prime_UTR | 25.0% |
| ! | TATTCACCAGATTAATATGT+GGG | + | chr3_1:73553333-73553352 | Msa0374220:CDS | 25.0% |
| ! | ATTCTGCTTATTAACCAAAT+TGG | + | chr3_1:73553488-73553507 | Msa0374220:intron | 25.0% |
| ! | GAACATGAAGAATTTGTATT+CGG | + | chr3_1:73553612-73553631 | Msa0374220:intron | 25.0% |
| ! | GATTAAATATGCAGATACAA+AGG | + | chr3_1:73553705-73553724 | Msa0374220:intron | 25.0% |
| !! | TCTAATAATATGTGTTTTGC+TGG | + | chr3_1:73554093-73554112 | Msa0374220:CDS | 25.0% |
| ! | TTGATTTAATTGCAGATTCT+TGG | + | chr3_1:73554703-73554722 | Msa0374220:intron | 25.0% |
| ! | GATAATAAGTTAGTGACAAA+TGG | - | chr3_1:73555048-73555067 | None:intergenic | 25.0% |
| ! | AAACATACATGATTTGATCA+CGG | - | chr3_1:73555090-73555109 | None:intergenic | 25.0% |
| !! | ATTTTGGATGCATGTATATT+TGG | + | chr3_1:73555597-73555616 | Msa0374220:three_prime_UTR | 25.0% |
| !! | GAAATGTGTATTTTTGTGCT+TGG | - | chr3_1:73552188-73552207 | None:intergenic | 30.0% |
| TGTAATGTTATTGGAGAATG+GGG | - | chr3_1:73552221-73552240 | None:intergenic | 30.0% | |
| ATAGAAAGTTGAAATGGATG+GGG | - | chr3_1:73552253-73552272 | None:intergenic | 30.0% | |
| ATTCTAATTCGAGGAAAACA+AGG | + | chr3_1:73552593-73552612 | Msa0374220:intron | 30.0% | |
| AGGAAAACAAGGAAACATAA+CGG | + | chr3_1:73552604-73552623 | Msa0374220:intron | 30.0% | |
| CAATCAAAGACAAAAGACAA+AGG | - | chr3_1:73552709-73552728 | None:intergenic | 30.0% | |
| !!! | ACCTTTTTTTTGTCAGAGAA+AGG | + | chr3_1:73552740-73552759 | Msa0374220:intron | 30.0% |
| TCCTTTCTCTGACAAAAAAA+AGG | - | chr3_1:73552744-73552763 | None:intergenic | 30.0% | |
| ! | ACTATGAGTCACTATGATTT+TGG | + | chr3_1:73553067-73553086 | Msa0374220:intron | 30.0% |
| AAGTTTCTGCAAAATCACAA+TGG | - | chr3_1:73553132-73553151 | None:intergenic | 30.0% | |
| AAAGTTCCTGCAGTATAAAA+GGG | - | chr3_1:73553167-73553186 | None:intergenic | 30.0% | |
| TAAAGTTCCTGCAGTATAAA+AGG | - | chr3_1:73553168-73553187 | None:intergenic | 30.0% | |
| TCTATAGCAAACTGCAATTA+AGG | - | chr3_1:73553209-73553228 | None:intergenic | 30.0% | |
| !! | TTAATTGCAGTTTGCTATAG+AGG | + | chr3_1:73553208-73553227 | Msa0374220:intron | 30.0% |
| CACATATTAATCTGGTGAAT+AGG | - | chr3_1:73553334-73553353 | None:intergenic | 30.0% | |
| CTATTCACCAGATTAATATG+TGG | + | chr3_1:73553332-73553351 | Msa0374220:CDS | 30.0% | |
| ATTCACCAGATTAATATGTG+GGG | + | chr3_1:73553334-73553353 | Msa0374220:CDS | 30.0% | |
| !! | CAAAGGTTGATTTGTTTCAT+TGG | + | chr3_1:73553450-73553469 | Msa0374220:intron | 30.0% |
| ! | GTTTTATAATGCTTAGTCAG+AGG | + | chr3_1:73553517-73553536 | Msa0374220:intron | 30.0% |
| AGCTAATAGACCTATTGATA+AGG | + | chr3_1:73553586-73553605 | Msa0374220:CDS | 30.0% | |
| CATGTTCTAACCTTATCAAT+AGG | - | chr3_1:73553599-73553618 | None:intergenic | 30.0% | |
| ! | GATACCATGCTTTCAAATTT+TGG | + | chr3_1:73553655-73553674 | Msa0374220:intron | 30.0% |
| ACATCCAAAATTTGAAAGCA+TGG | - | chr3_1:73553662-73553681 | None:intergenic | 30.0% | |
| !!! | TTAAAACCTTTTTTCGCAGA+CGG | - | chr3_1:73553766-73553785 | None:intergenic | 30.0% |
| TTTCTATCACTTTATGTCAC+CGG | + | chr3_1:73553991-73554010 | Msa0374220:intron | 30.0% | |
| !!! | GATGTTTTTTATGTGATGTC+CGG | + | chr3_1:73554412-73554431 | Msa0374220:CDS | 30.0% |
| ! | GAAAGATTTTTCTTGTGGAT+CGG | + | chr3_1:73554454-73554473 | Msa0374220:CDS | 30.0% |
| GTTATCCATAGAATGATAGA+AGG | + | chr3_1:73554541-73554560 | Msa0374220:intron | 30.0% | |
| TGTCTTAATGTGAGAAAGAA+TGG | + | chr3_1:73554584-73554603 | Msa0374220:intron | 30.0% | |
| GTCTTAATGTGAGAAAGAAT+GGG | + | chr3_1:73554585-73554604 | Msa0374220:intron | 30.0% | |
| TGTCATGCCATAATTGAATA+TGG | - | chr3_1:73554650-73554669 | None:intergenic | 30.0% | |
| TAATGGTTATCAAGAAAGCT+AGG | - | chr3_1:73554957-73554976 | None:intergenic | 30.0% | |
| !!! | CAAGCTATTTTTTTCAGAAG+GGG | - | chr3_1:73555181-73555200 | None:intergenic | 30.0% |
| !!! | CCAAGCTATTTTTTTCAGAA+GGG | - | chr3_1:73555182-73555201 | None:intergenic | 30.0% |
| AATATGAAACGTGATGAGTA+TGG | + | chr3_1:73555434-73555453 | Msa0374220:three_prime_UTR | 30.0% | |
| !! | ATGAGTATGGTCATTTTCAT+TGG | + | chr3_1:73555447-73555466 | Msa0374220:three_prime_UTR | 30.0% |
| TCAAAACCATATACAATGTG+TGG | + | chr3_1:73555479-73555498 | Msa0374220:three_prime_UTR | 30.0% | |
| ! | AAATTAGTCTGTGTGAAAGT+TGG | + | chr3_1:73555651-73555670 | Msa0374220:three_prime_UTR | 30.0% |
| ! | TATGAGTCTCTCTTTGAAGA+TGG | + | chr3_1:73552398-73552417 | Msa0374220:five_prime_UTR | 35.0% |
| !!! | TCATTAGTTCTGCAGTTTTG+TGG | + | chr3_1:73552426-73552445 | Msa0374220:five_prime_UTR | 35.0% |
| CTCAAATCTTGTTACCAACA+TGG | - | chr3_1:73552467-73552486 | None:intergenic | 35.0% | |
| !! | TGTTGGTAACAAGATTTGAG+CGG | + | chr3_1:73552467-73552486 | Msa0374220:five_prime_UTR | 35.0% |
| AAGATAGCTGTAGCTTCTAA+AGG | + | chr3_1:73552498-73552517 | Msa0374220:five_prime_UTR | 35.0% | |
| TTGCAGCTTCAACAAAATCA+CGG | + | chr3_1:73553103-73553122 | Msa0374220:intron | 35.0% | |
| ! | ATGTTACCCTTTTATACTGC+AGG | + | chr3_1:73553158-73553177 | Msa0374220:intron | 35.0% |
| ATCCATTCCCTTAATTGATG+AGG | + | chr3_1:73553390-73553409 | Msa0374220:CDS | 35.0% | |
| ! | CTTGAAGTTTGATAGTAGTC+AGG | + | chr3_1:73553417-73553436 | Msa0374220:CDS | 35.0% |
| AGTCAGGTAAATGTTTGCAA+AGG | + | chr3_1:73553433-73553452 | Msa0374220:intron | 35.0% | |
| ! | CATACTTGTTAGATGTTCCT+AGG | - | chr3_1:73553559-73553578 | None:intergenic | 35.0% |
| TTCCTTTCTCTAATACCTTG+AGG | + | chr3_1:73554028-73554047 | Msa0374220:intron | 35.0% | |
| AAAACTGCAGGGAATGTATA+TGG | + | chr3_1:73554056-73554075 | Msa0374220:intron | 35.0% | |
| AAACTGCAGGGAATGTATAT+GGG | + | chr3_1:73554057-73554076 | Msa0374220:intron | 35.0% | |
| AGTTCTTGCATTGCATTCTA+AGG | + | chr3_1:73554194-73554213 | Msa0374220:intron | 35.0% | |
| TTCGATAGATTTCAGCATAG+TGG | - | chr3_1:73554369-73554388 | None:intergenic | 35.0% | |
| TTAATGTGAGAAAGAATGGG+AGG | + | chr3_1:73554588-73554607 | Msa0374220:intron | 35.0% | |
| TCTGTCAATGGTTCAATCAT+TGG | - | chr3_1:73554730-73554749 | None:intergenic | 35.0% | |
| AGGAACTTATATTCCACAGA+TGG | + | chr3_1:73554876-73554895 | Msa0374220:CDS | 35.0% | |
| TAGTATGACATGTTGCGAAA+AGG | - | chr3_1:73555006-73555025 | None:intergenic | 35.0% | |
| ATGTGTTGTAACAACAATCC+CGG | - | chr3_1:73555148-73555167 | None:intergenic | 35.0% | |
| ! | CCCTTCTGAAAAAAATAGCT+TGG | + | chr3_1:73555179-73555198 | Msa0374220:intron | 35.0% |
| !!! | GCCAAGCTATTTTTTTCAGA+AGG | - | chr3_1:73555183-73555202 | None:intergenic | 35.0% |
| AACTGTGATTCGTGTTTAAC+AGG | + | chr3_1:73555221-73555240 | Msa0374220:intron | 35.0% | |
| !!! | GTATATGGTTTTGACACTTG+TGG | - | chr3_1:73555473-73555492 | None:intergenic | 35.0% |
| CCTAAACCACACATTGTATA+TGG | - | chr3_1:73555488-73555507 | None:intergenic | 35.0% | |
| CCATATACAATGTGTGGTTT+AGG | + | chr3_1:73555485-73555504 | Msa0374220:three_prime_UTR | 35.0% | |
| ! | GACTGCTCATTTTATGCAAT+AGG | + | chr3_1:73555557-73555576 | Msa0374220:three_prime_UTR | 35.0% |
| !! | GTTCTGCAGTTTTGTGGTAT+TGG | + | chr3_1:73552432-73552451 | Msa0374220:five_prime_UTR | 40.0% |
| ATTGGTCATCATCACCATGT+TGG | + | chr3_1:73552450-73552469 | Msa0374220:five_prime_UTR | 40.0% | |
| !! | GTTGGTAACAAGATTTGAGC+GGG | + | chr3_1:73552468-73552487 | Msa0374220:five_prime_UTR | 40.0% |
| CTTCTCCCCACATATTAATC+TGG | - | chr3_1:73553342-73553361 | None:intergenic | 40.0% | |
| CAGATTAATATGTGGGGAGA+AGG | + | chr3_1:73553340-73553359 | Msa0374220:CDS | 40.0% | |
| GGAGAAGGCTTCAAAAGTAA+TGG | + | chr3_1:73553355-73553374 | Msa0374220:CDS | 40.0% | |
| CATTCCCTTAATTGATGAGG+CGG | + | chr3_1:73553393-73553412 | Msa0374220:CDS | 40.0% | |
| AAGTCCGCCTCATCAATTAA+GGG | - | chr3_1:73553400-73553419 | None:intergenic | 40.0% | |
| CATTTCTGACATTGCCTTAC+AGG | + | chr3_1:73553850-73553869 | Msa0374220:intron | 40.0% | |
| ! | TCGTTTGAAGTTAGTGCAGT+TGG | + | chr3_1:73553898-73553917 | Msa0374220:CDS | 40.0% |
| AGGAAAAAGAAAGACGATGC+CGG | - | chr3_1:73554013-73554032 | None:intergenic | 40.0% | |
| ! | TGCCTCAAGGTATTAGAGAA+AGG | - | chr3_1:73554033-73554052 | None:intergenic | 40.0% |
| TTGAGGCAACAAAAACTGCA+GGG | + | chr3_1:73554045-73554064 | Msa0374220:intron | 40.0% | |
| ATGTCCATACTCCATCTCAA+AGG | - | chr3_1:73554245-73554264 | None:intergenic | 40.0% | |
| TTGAGATGGAGTATGGACAT+TGG | + | chr3_1:73554245-73554264 | Msa0374220:CDS | 40.0% | |
| TGAGATGGAGTATGGACATT+GGG | + | chr3_1:73554246-73554265 | Msa0374220:CDS | 40.0% | |
| !! | ATTGGGTTGATGAGCAAAAC+CGG | + | chr3_1:73554263-73554282 | Msa0374220:CDS | 40.0% |
| TTCTCATTTCCGAGATTTGC+CGG | - | chr3_1:73554285-73554304 | None:intergenic | 40.0% | |
| GTATTAGTGACATAGAGCTC+AGG | + | chr3_1:73554320-73554339 | Msa0374220:CDS | 40.0% | |
| ! | CGGCTGAAAGATTTTTCTTG+TGG | + | chr3_1:73554449-73554468 | Msa0374220:CDS | 40.0% |
| ! | AGATTTTTCTTGTGGATCGG+TGG | + | chr3_1:73554457-73554476 | Msa0374220:CDS | 40.0% |
| TCTCGCCTTCTATCATTCTA+TGG | - | chr3_1:73554549-73554568 | None:intergenic | 40.0% | |
| AATCGTTGTTGCTCTGTCAA+TGG | - | chr3_1:73554742-73554761 | None:intergenic | 40.0% | |
| ATTGACAGAGCAACAACGAT+TGG | + | chr3_1:73554741-73554760 | Msa0374220:CDS | 40.0% | |
| CGATTGGATATCGATAACCT+TGG | + | chr3_1:73554757-73554776 | Msa0374220:CDS | 40.0% | |
| CTTGTTGACATGATTGTCCA+AGG | - | chr3_1:73554777-73554796 | None:intergenic | 40.0% | |
| TTTCTCCATGCCTTGTGAAA+GGG | - | chr3_1:73554809-73554828 | None:intergenic | 40.0% | |
| AGAAAGCTAGGTACAATACC+TGG | - | chr3_1:73554945-73554964 | None:intergenic | 40.0% | |
| CATGATTTGATCACGGAGTT+CGG | - | chr3_1:73555083-73555102 | None:intergenic | 40.0% | |
| TTTAACAGGCTGACCATCTT+CGG | + | chr3_1:73555235-73555254 | Msa0374220:intron | 40.0% | |
| AGAATATTTCCAACGCCTGA+GGG | + | chr3_1:73555329-73555348 | Msa0374220:CDS | 40.0% | |
| AACAAGACTAAGCAGGTTCT+CGG | - | chr3_1:73555383-73555402 | None:intergenic | 40.0% | |
| ! | TTTCCTGCAGTCTTTTGTTG+TGG | + | chr3_1:73555519-73555538 | Msa0374220:three_prime_UTR | 40.0% |
| TGTTATTGGAGAATGGGGAG+TGG | - | chr3_1:73552216-73552235 | None:intergenic | 45.0% | |
| TTGAATAAGTGGCCCTTCCT+TGG | + | chr3_1:73553020-73553039 | Msa0374220:intron | 45.0% | |
| CTCACAGTCTATCCAAGGAA+GGG | - | chr3_1:73553035-73553054 | None:intergenic | 45.0% | |
| TCTCACAGTCTATCCAAGGA+AGG | - | chr3_1:73553036-73553055 | None:intergenic | 45.0% | |
| CCAATCTCACAGTCTATCCA+AGG | - | chr3_1:73553040-73553059 | None:intergenic | 45.0% | |
| CCTTGGATAGACTGTGAGAT+TGG | + | chr3_1:73553037-73553056 | Msa0374220:intron | 45.0% | |
| ! | AGACTGATTTAATTGCGGCG+CGG | + | chr3_1:73553239-73553258 | Msa0374220:five_prime_UTR | 45.0% |
| TCTCGAGGAAACAAACTGTG+CGG | - | chr3_1:73553293-73553312 | None:intergenic | 45.0% | |
| ! | CACAGTTTGTTTCCTCGAGA+AGG | + | chr3_1:73553293-73553312 | Msa0374220:CDS | 45.0% |
| ATACACACTCATCCTTCTCG+AGG | - | chr3_1:73553308-73553327 | None:intergenic | 45.0% | |
| CGCCTCATCAATTAAGGGAA+TGG | - | chr3_1:73553395-73553414 | None:intergenic | 45.0% | |
| CAAGTCCGCCTCATCAATTA+AGG | - | chr3_1:73553401-73553420 | None:intergenic | 45.0% | |
| TAGTCAGAGGATGCTTCTCA+TGG | + | chr3_1:73553530-73553549 | Msa0374220:intron | 45.0% | |
| GATGCTTCTCATGGTATCCT+AGG | + | chr3_1:73553539-73553558 | Msa0374220:CDS | 45.0% | |
| TAAGAGCCGTCTGCGAAAAA+AGG | + | chr3_1:73553757-73553776 | Msa0374220:CDS | 45.0% | |
| ! | CTGCAGTTTTTGTTGCCTCA+AGG | - | chr3_1:73554046-73554065 | None:intergenic | 45.0% |
| CTTGAGGCAACAAAAACTGC+AGG | + | chr3_1:73554044-73554063 | Msa0374220:intron | 45.0% | |
| AGGGAATGTATATGGGTGGT+GGG | + | chr3_1:73554064-73554083 | Msa0374220:intron | 45.0% | |
| !! | AATGTATATGGGTGGTGGGT+TGG | + | chr3_1:73554068-73554087 | Msa0374220:CDS | 45.0% |
| ACAAACCAACCTGGATTCAC+AGG | - | chr3_1:73554120-73554139 | None:intergenic | 45.0% | |
| AGCATCTTCACAAACCAACC+TGG | - | chr3_1:73554129-73554148 | None:intergenic | 45.0% | |
| GCTGCAATTCCTACGGATAA+GGG | - | chr3_1:73554223-73554242 | None:intergenic | 45.0% | |
| CTCAAAGGCTGCAATTCCTA+CGG | - | chr3_1:73554230-73554249 | None:intergenic | 45.0% | |
| ! | AGGAATTGCAGCCTTTGAGA+TGG | + | chr3_1:73554231-73554250 | Msa0374220:intron | 45.0% |
| TGAGCAAAACCGGCAAATCT+CGG | + | chr3_1:73554273-73554292 | Msa0374220:CDS | 45.0% | |
| TTTATGTGATGTCCGGCATG+TGG | + | chr3_1:73554419-73554438 | Msa0374220:CDS | 45.0% | |
| TCACCTTGAGAAGCTCAGAA+GGG | - | chr3_1:73554489-73554508 | None:intergenic | 45.0% | |
| ATCACCTTGAGAAGCTCAGA+AGG | - | chr3_1:73554490-73554509 | None:intergenic | 45.0% | |
| GTTTCTCCATGCCTTGTGAA+AGG | - | chr3_1:73554810-73554829 | None:intergenic | 45.0% | |
| GCAGCTGGACAATTCATTGA+AGG | + | chr3_1:73554856-73554875 | Msa0374220:CDS | 45.0% | |
| ! | TCTTGTGAGCTTTGTGAACC+AGG | + | chr3_1:73554924-73554943 | Msa0374220:CDS | 45.0% |
| ! | TGTTCGCGACATTTGTTGCA+AGG | - | chr3_1:73555268-73555287 | None:intergenic | 45.0% |
| AGCTCGATGTTTGCTTGCTT+TGG | + | chr3_1:73555305-73555324 | Msa0374220:CDS | 45.0% | |
| GCTCGATGTTTGCTTGCTTT+GGG | + | chr3_1:73555306-73555325 | Msa0374220:CDS | 45.0% | |
| GAGAATATTTCCAACGCCTG+AGG | + | chr3_1:73555328-73555347 | Msa0374220:CDS | 45.0% | |
| ACAAGACTAAGCAGGTTCTC+GGG | - | chr3_1:73555382-73555401 | None:intergenic | 45.0% | |
| GTCTTGCAACAAGACTAAGC+AGG | - | chr3_1:73555390-73555409 | None:intergenic | 45.0% | |
| TCTCCACAACAAAAGACTGC+AGG | - | chr3_1:73555525-73555544 | None:intergenic | 45.0% | |
| TATTGGAGAATGGGGAGTGG+TGG | - | chr3_1:73552213-73552232 | None:intergenic | 50.0% | |
| GACGGCGAATTCATGCTCAA+TGG | - | chr3_1:73553271-73553290 | None:intergenic | 50.0% | |
| GAGGAAACAAACTGTGCGGA+CGG | - | chr3_1:73553289-73553308 | None:intergenic | 50.0% | |
| CTGCTGCACATAAGCCTGTA+AGG | - | chr3_1:73553867-73553886 | None:intergenic | 50.0% | |
| AACGTGTTAGACAGCAGGTG+TGG | + | chr3_1:73553933-73553952 | Msa0374220:intron | 50.0% | |
| ACGTGTTAGACAGCAGGTGT+GGG | + | chr3_1:73553934-73553953 | Msa0374220:intron | 50.0% | |
| CTGCAGGGAATGTATATGGG+TGG | + | chr3_1:73554060-73554079 | Msa0374220:intron | 50.0% | |
| CAGGGAATGTATATGGGTGG+TGG | + | chr3_1:73554063-73554082 | Msa0374220:intron | 50.0% | |
| TTTGCTGGACCTGTGAATCC+AGG | + | chr3_1:73554108-73554127 | Msa0374220:CDS | 50.0% | |
| CTAAGGACACCCTTATCCGT+AGG | + | chr3_1:73554211-73554230 | Msa0374220:intron | 50.0% | |
| GGCTGCAATTCCTACGGATA+AGG | - | chr3_1:73554224-73554243 | None:intergenic | 50.0% | |
| !! | GCAGCCTTTGAGATGGAGTA+TGG | + | chr3_1:73554238-73554257 | Msa0374220:CDS | 50.0% |
| TGACATAGAGCTCAGGATGC+TGG | + | chr3_1:73554327-73554346 | Msa0374220:CDS | 50.0% | |
| GTCCGGCATGTGGAAAACAA+CGG | + | chr3_1:73554429-73554448 | Msa0374220:CDS | 50.0% | |
| !! | AGCCGTTGTTTTCCACATGC+CGG | - | chr3_1:73554434-73554453 | None:intergenic | 50.0% |
| GCAGAAGATGCCCTTTCACA+AGG | + | chr3_1:73554796-73554815 | Msa0374220:CDS | 50.0% | |
| AGATGCCCTTTCACAAGGCA+TGG | + | chr3_1:73554801-73554820 | Msa0374220:CDS | 50.0% | |
| CACAAGGCATGGAGAAACTG+CGG | + | chr3_1:73554812-73554831 | Msa0374220:CDS | 50.0% | |
| TCCACAGATGGCTACTGCAA+TGG | + | chr3_1:73554888-73554907 | Msa0374220:CDS | 50.0% | |
| TCCATTGCAGTAGCCATCTG+TGG | - | chr3_1:73554892-73554911 | None:intergenic | 50.0% | |
| GCAAACATCGAGCTGACTGA+CGG | - | chr3_1:73555299-73555318 | None:intergenic | 50.0% | |
| ATAGTGAGCTCAAAGCCCTC+AGG | - | chr3_1:73555347-73555366 | None:intergenic | 50.0% | |
| !! | TGAGGGCTTTGAGCTCACTA+TGG | + | chr3_1:73555346-73555365 | Msa0374220:CDS | 50.0% |
| CAAGACTAAGCAGGTTCTCG+GGG | - | chr3_1:73555381-73555400 | None:intergenic | 50.0% | |
| GCTCGAACGTGTTAGACAGC+AGG | + | chr3_1:73553928-73553947 | Msa0374220:CDS | 55.0% | |
| CGTGTTAGACAGCAGGTGTG+GGG | + | chr3_1:73553935-73553954 | Msa0374220:intron | 55.0% | |
| CTGGACCTGTGAATCCAGGT+TGG | + | chr3_1:73554112-73554131 | Msa0374220:intron | 55.0% | |
| ! | GAGCTCAGGATGCTGGTTGA+TGG | + | chr3_1:73554334-73554353 | Msa0374220:CDS | 55.0% |
| TCGCCCTTCTGAGCTTCTCA+AGG | + | chr3_1:73554483-73554502 | Msa0374220:CDS | 55.0% | |
| GCAAGGTTTCCTGCCGAAGA+TGG | - | chr3_1:73555251-73555270 | None:intergenic | 55.0% | |
| ! | CTCGCTGATAGCGTAGCAGC+TGG | + | chr3_1:73554841-73554860 | Msa0374220:CDS | 60.0% |
| ACAGGCTGACCATCTTCGGC+AGG | + | chr3_1:73555239-73555258 | Msa0374220:intron | 60.0% | |
| AGCTCAAAGCCCTCAGGCGT+TGG | - | chr3_1:73555341-73555360 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73552148 | 73555708 | 73552148 | ID=Msa0374220;Name=Msa0374220 |
| chr3_1 | mRNA | 73552148 | 73555708 | 73552148 | ID=Msa0374220-mRNA-1;Parent=Msa0374220;Name=Msa0374220-mRNA-1;_AED=0.14;_eAED=0.14;_QI=431|1|1|1|0.87|0.88|9|313|363 |
| chr3_1 | exon | 73552148 | 73552519 | 73552148 | ID=Msa0374220-mRNA-1:exon:16727;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73553218 | 73553438 | 73553218 | ID=Msa0374220-mRNA-1:exon:16728;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73553533 | 73553607 | 73553533 | ID=Msa0374220-mRNA-1:exon:16729;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73553719 | 73553778 | 73553719 | ID=Msa0374220-mRNA-1:exon:16730;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73553872 | 73553949 | 73553872 | ID=Msa0374220-mRNA-1:exon:16731;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73554066 | 73554129 | 73554066 | ID=Msa0374220-mRNA-1:exon:16732;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73554233 | 73554504 | 73554233 | ID=Msa0374220-mRNA-1:exon:16733;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73554718 | 73554945 | 73554718 | ID=Msa0374220-mRNA-1:exon:16734;Parent=Msa0374220-mRNA-1 |
| chr3_1 | exon | 73555243 | 73555708 | 73555243 | ID=Msa0374220-mRNA-1:exon:16735;Parent=Msa0374220-mRNA-1 |
| chr3_1 | five_prime_UTR | 73552148 | 73552519 | 73552148 | ID=Msa0374220-mRNA-1:five_prime_utr;Parent=Msa0374220-mRNA-1 |
| chr3_1 | five_prime_UTR | 73553218 | 73553276 | 73553218 | ID=Msa0374220-mRNA-1:five_prime_utr;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73553277 | 73553438 | 73553277 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73553533 | 73553607 | 73553533 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73553719 | 73553778 | 73553719 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73553872 | 73553949 | 73553872 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73554066 | 73554129 | 73554066 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73554233 | 73554504 | 73554233 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73554718 | 73554945 | 73554718 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | CDS | 73555243 | 73555395 | 73555243 | ID=Msa0374220-mRNA-1:cds;Parent=Msa0374220-mRNA-1 |
| chr3_1 | three_prime_UTR | 73555396 | 73555708 | 73555396 | ID=Msa0374220-mRNA-1:three_prime_utr;Parent=Msa0374220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
