Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469890 | XP_003602022.1 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469890 | sp|Q39237|TGA1_ARATH | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469890 | G7J4F0 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0469890 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032470 | Msa0469890 | 0.803117 | 4.063118e-49 | -8.615850e-47 |
| Msa0217670 | Msa0469890 | 0.803971 | 2.702632e-49 | -8.615850e-47 |
| Msa0222150 | Msa0469890 | 0.831936 | 1.258513e-55 | -8.615850e-47 |
| Msa0374220 | Msa0469890 | 0.993102 | 1.820234e-197 | -8.615850e-47 |
| Msa0469890 | Msa0515340 | 0.878883 | 1.957794e-69 | -8.615850e-47 |
| Msa0469890 | Msa0527540 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa0469890 | Msa0549950 | 0.834748 | 2.504748e-56 | -8.615850e-47 |
| Msa0469890 | Msa0646020 | 0.845248 | 4.570865e-59 | -8.615850e-47 |
| Msa0469890 | Msa0646420 | 0.836189 | 1.082718e-56 | -8.615850e-47 |
| Msa0469890 | Msa0657930 | -0.807216 | 5.632565e-50 | -8.615850e-47 |
| Msa0469890 | Msa0662220 | 0.837036 | 6.586898e-57 | -8.615850e-47 |
| Msa0469890 | Msa0686030 | 0.828353 | 9.422383e-55 | -8.615850e-47 |
| Msa0469890 | Msa0878220 | 0.850122 | 2.082905e-60 | -8.615850e-47 |
| Msa0469890 | Msa0891590 | 0.809993 | 1.437425e-50 | -8.615850e-47 |
| Msa0469890 | Msa0943970 | 0.849073 | 4.085113e-60 | -8.615850e-47 |
| Msa0469890 | Msa0944020 | 0.854125 | 1.516078e-61 | -8.615850e-47 |
| Msa0469890 | Msa0992510 | 0.844028 | 9.743807e-59 | -8.615850e-47 |
| Msa0469890 | Msa1140540 | 0.814559 | 1.448472e-51 | -8.615850e-47 |
| Msa0469890 | Msa1160560 | 0.801188 | 1.012812e-48 | -8.615850e-47 |
| Msa0469890 | Msa1196610 | -0.801928 | 7.144298e-49 | -8.615850e-47 |
| Msa0469890 | Msa1257750 | 0.815852 | 7.477585e-52 | -8.615850e-47 |
| Msa0469890 | Msa1271130 | 0.804377 | 2.223935e-49 | -8.615850e-47 |
| Msa0469890 | Msa1329200 | 0.831366 | 1.738945e-55 | -8.615850e-47 |
| Msa0469890 | Msa1357560 | 0.994763 | 5.411071e-210 | -8.615850e-47 |
| Msa0469890 | Msa1392980 | 0.809848 | 1.544400e-50 | -8.615850e-47 |
| Msa0469890 | Msa1401990 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0469890 | Msa1442920 | 0.800593 | 1.340288e-48 | -8.615850e-47 |
| Msa0287870 | Msa0469890 | 0.803448 | 3.469568e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469890 | MtrunA17_Chr3g0124601 | 99.449 | 363 | 2 | 0 | 1 | 363 | 1 | 363 | 0.0 | 751 |
| Msa0469890 | MtrunA17_Chr8g0382861 | 68.839 | 353 | 102 | 4 | 12 | 363 | 13 | 358 | 1.69e-176 | 494 |
| Msa0469890 | MtrunA17_Chr8g0353501 | 56.269 | 327 | 125 | 4 | 43 | 361 | 150 | 466 | 3.41e-117 | 347 |
| Msa0469890 | MtrunA17_Chr3g0115371 | 49.429 | 350 | 170 | 3 | 14 | 359 | 1 | 347 | 4.49e-116 | 341 |
| Msa0469890 | MtrunA17_Chr7g0256211 | 58.667 | 300 | 111 | 3 | 70 | 361 | 158 | 452 | 9.80e-113 | 335 |
| Msa0469890 | MtrunA17_Chr5g0424861 | 49.716 | 352 | 165 | 4 | 14 | 358 | 1 | 347 | 2.04e-111 | 329 |
| Msa0469890 | MtrunA17_Chr5g0422771 | 55.556 | 306 | 124 | 3 | 64 | 361 | 163 | 464 | 6.36e-110 | 329 |
| Msa0469890 | MtrunA17_Chr2g0321431 | 54.795 | 292 | 120 | 4 | 73 | 361 | 187 | 469 | 6.63e-109 | 327 |
| Msa0469890 | MtrunA17_Chr1g0210151 | 55.401 | 287 | 124 | 2 | 79 | 361 | 54 | 340 | 1.27e-105 | 313 |
| Msa0469890 | MtrunA17_Chr1g0174701 | 52.117 | 307 | 138 | 3 | 64 | 361 | 200 | 506 | 1.18e-103 | 314 |
| Msa0469890 | MtrunA17_Chr4g0026401 | 46.991 | 349 | 155 | 6 | 30 | 361 | 126 | 461 | 1.79e-103 | 313 |
| Msa0469890 | MtrunA17_Chr7g0258321 | 50.321 | 312 | 148 | 2 | 57 | 361 | 152 | 463 | 6.77e-103 | 311 |
| Msa0469890 | MtrunA17_Chr5g0424851 | 53.704 | 216 | 99 | 1 | 144 | 358 | 7 | 222 | 2.16e-75 | 239 |
| Msa0469890 | MtrunA17_Chr5g0424851 | 53.960 | 202 | 93 | 0 | 148 | 349 | 225 | 426 | 6.67e-72 | 230 |
| Msa0469890 | MtrunA17_Chr3g0093451 | 57.669 | 163 | 58 | 3 | 82 | 235 | 49 | 209 | 1.32e-59 | 191 |
| Msa0469890 | MtrunA17_Chr1g0196951 | 38.806 | 201 | 98 | 5 | 160 | 354 | 59 | 240 | 7.16e-34 | 125 |
| Msa0469890 | MtrunA17_Chr8g0384821 | 25.957 | 235 | 139 | 5 | 150 | 349 | 14 | 248 | 7.80e-16 | 76.6 |
| Msa0469890 | MtrunA17_Chr7g0242651 | 24.651 | 215 | 152 | 5 | 147 | 351 | 5 | 219 | 1.24e-14 | 72.8 |
| Msa0469890 | MtrunA17_Chr2g0315631 | 23.182 | 220 | 135 | 3 | 151 | 350 | 4 | 209 | 2.09e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469890 | AT5G65210.5 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G65210.7 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G65210.3 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G65210.1 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G65210.2 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G65210.4 | 67.663 | 368 | 114 | 2 | 1 | 363 | 1 | 368 | 0.0 | 515 |
| Msa0469890 | AT5G10030.5 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0469890 | AT5G10030.3 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0469890 | AT5G10030.1 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0469890 | AT5G10030.4 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0469890 | AT5G10030.2 | 68.767 | 365 | 111 | 2 | 1 | 363 | 1 | 364 | 0.0 | 512 |
| Msa0469890 | AT5G65210.6 | 73.064 | 297 | 78 | 1 | 69 | 363 | 2 | 298 | 1.67e-160 | 452 |
| Msa0469890 | AT1G77920.1 | 56.764 | 377 | 136 | 7 | 2 | 363 | 4 | 368 | 8.89e-143 | 409 |
| Msa0469890 | AT1G22070.1 | 56.557 | 366 | 143 | 4 | 12 | 361 | 17 | 382 | 1.93e-135 | 391 |
| Msa0469890 | AT5G06950.2 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0469890 | AT5G06950.4 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0469890 | AT5G06950.1 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0469890 | AT5G06950.5 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0469890 | AT5G06950.3 | 59.516 | 289 | 107 | 2 | 79 | 361 | 46 | 330 | 2.16e-113 | 333 |
| Msa0469890 | AT3G12250.6 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0469890 | AT3G12250.2 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0469890 | AT3G12250.7 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0469890 | AT3G12250.1 | 54.268 | 328 | 131 | 4 | 49 | 361 | 7 | 330 | 2.13e-112 | 331 |
| Msa0469890 | AT3G12250.3 | 55.305 | 311 | 129 | 2 | 57 | 361 | 18 | 324 | 1.93e-111 | 328 |
| Msa0469890 | AT3G12250.5 | 57.191 | 299 | 114 | 3 | 73 | 361 | 9 | 303 | 3.57e-111 | 327 |
| Msa0469890 | AT5G06960.3 | 58.824 | 289 | 109 | 2 | 79 | 361 | 26 | 310 | 8.14e-111 | 326 |
| Msa0469890 | AT5G06960.2 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa0469890 | AT5G06960.1 | 58.824 | 289 | 109 | 2 | 79 | 361 | 46 | 330 | 9.62e-111 | 327 |
| Msa0469890 | AT3G12250.4 | 55.305 | 311 | 129 | 2 | 57 | 361 | 49 | 355 | 1.38e-110 | 327 |
| Msa0469890 | AT1G08320.2 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa0469890 | AT1G08320.5 | 56.098 | 287 | 111 | 3 | 79 | 361 | 54 | 329 | 9.75e-110 | 325 |
| Msa0469890 | AT1G08320.1 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0469890 | AT1G08320.4 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0469890 | AT1G08320.3 | 56.098 | 287 | 111 | 3 | 79 | 361 | 178 | 453 | 3.36e-108 | 325 |
| Msa0469890 | AT5G06839.1 | 49.538 | 325 | 147 | 4 | 52 | 361 | 93 | 415 | 4.68e-102 | 307 |
| Msa0469890 | AT5G06839.2 | 49.387 | 326 | 147 | 4 | 52 | 361 | 93 | 416 | 7.20e-102 | 307 |
| Msa0469890 | AT5G06839.3 | 52.685 | 298 | 126 | 3 | 79 | 361 | 161 | 458 | 1.13e-101 | 308 |
| Msa0469890 | AT1G68640.1 | 52.922 | 308 | 136 | 3 | 61 | 361 | 147 | 452 | 3.67e-99 | 301 |
| Msa0469890 | AT1G58330.1 | 26.126 | 222 | 151 | 4 | 143 | 351 | 2 | 223 | 1.04e-18 | 84.3 |
| Msa0469890 | AT3G14880.2 | 26.126 | 222 | 129 | 7 | 147 | 343 | 6 | 217 | 1.04e-12 | 67.4 |
| Msa0469890 | AT3G14880.1 | 25.328 | 229 | 129 | 7 | 147 | 343 | 6 | 224 | 7.70e-12 | 65.1 |
Find 110 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTAAATAAATTAATTT+TGG | 0.164639 | 3_3:-71910760 | Msa0469890:three_prime_UTR |
| AAGAGTGTTTGTAATGTTAT+TGG | 0.192356 | 3_3:+71914120 | None:intergenic |
| AGCTCGATGTTTGCTTGCTT+TGG | 0.213054 | 3_3:-71911036 | Msa0469890:CDS |
| TTGATTTAATTGCAGATTCT+TGG | 0.226068 | 3_3:-71911638 | Msa0469890:intron |
| AAAACTGCAGGGAATGTATA+TGG | 0.249625 | 3_3:-71912285 | Msa0469890:intron |
| CCTAAACCACACATTGTATA+TGG | 0.292874 | 3_3:+71910856 | None:intergenic |
| CAAGTCCGCCTCATCAATTA+AGG | 0.315142 | 3_3:+71912943 | None:intergenic |
| TTCTCATTTCCGAGATTTGC+CGG | 0.317139 | 3_3:+71912059 | None:intergenic |
| TTAATTGCAGTTTGCTATAG+AGG | 0.320466 | 3_3:-71913133 | Msa0469890:intron |
| GCAGCCTTTGAGATGGAGTA+TGG | 0.346430 | 3_3:-71912103 | Msa0469890:CDS |
| GCTCGATGTTTGCTTGCTTT+GGG | 0.348084 | 3_3:-71911035 | Msa0469890:CDS |
| CATGTTCTAACCTTATCAAT+AGG | 0.384759 | 3_3:+71912745 | None:intergenic |
| TCTGTCAATGGTTCAATCAT+TGG | 0.390810 | 3_3:+71911614 | None:intergenic |
| CCATATACAATGTGTGGTTT+AGG | 0.401655 | 3_3:-71910856 | Msa0469890:three_prime_UTR |
| AATATTATAGAAAGTTGAAA+TGG | 0.410564 | 3_3:+71914091 | None:intergenic |
| CATACTTGTTAGATGTTCCT+AGG | 0.414801 | 3_3:+71912785 | None:intergenic |
| CTTCTCCCCACATATTAATC+TGG | 0.429966 | 3_3:+71913002 | None:intergenic |
| CACATATTAATCTGGTGAAT+AGG | 0.436108 | 3_3:+71913010 | None:intergenic |
| TTTAACAGGCTGACCATCTT+CGG | 0.437689 | 3_3:-71911106 | Msa0469890:intron |
| AACAAGACTAAGCAGGTTCT+CGG | 0.440007 | 3_3:+71910961 | None:intergenic |
| ATTGGGTTGATGAGCAAAAC+CGG | 0.440031 | 3_3:-71912078 | Msa0469890:CDS |
| AATGTATATGGGTGGTGGGT+TGG | 0.443309 | 3_3:-71912273 | Msa0469890:CDS |
| ACAAGACTAAGCAGGTTCTC+GGG | 0.443620 | 3_3:+71910962 | None:intergenic |
| TTGTAATGTTATTGGAGAAT+GGG | 0.444379 | 3_3:+71914128 | None:intergenic |
| CTTGAAGTTTGATAGTAGTC+AGG | 0.454381 | 3_3:-71912924 | Msa0469890:intron |
| TTCGATAGATTTCAGCATAG+TGG | 0.456188 | 3_3:+71911975 | None:intergenic |
| AATCGTTGTTGCTCTGTCAA+TGG | 0.456266 | 3_3:+71911602 | None:intergenic |
| TCTTGTGAGCTTTGTGAACC+AGG | 0.458406 | 3_3:-71911417 | Msa0469890:intron |
| AGCTCAAAGCCCTCAGGCGT+TGG | 0.459290 | 3_3:+71911003 | None:intergenic |
| GAGCTCAGGATGCTGGTTGA+TGG | 0.463581 | 3_3:-71912007 | Msa0469890:CDS |
| TGAGATGGAGTATGGACATT+GGG | 0.465713 | 3_3:-71912095 | Msa0469890:CDS |
| CACAGTTTGTTTCCTCGAGA+AGG | 0.467650 | 3_3:-71913048 | Msa0469890:CDS |
| TTTGTAATGTTATTGGAGAA+TGG | 0.474133 | 3_3:+71914127 | None:intergenic |
| TATAGAAAGTTGAAATGGAT+GGG | 0.474395 | 3_3:+71914096 | None:intergenic |
| TGAGGGCTTTGAGCTCACTA+TGG | 0.474812 | 3_3:-71910995 | Msa0469890:CDS |
| TCGTTTGAAGTTAGTGCAGT+TGG | 0.476876 | 3_3:-71912443 | Msa0469890:CDS |
| TTTGCTGGACCTGTGAATCC+AGG | 0.482156 | 3_3:-71912233 | Msa0469890:intron |
| CGCCTCATCAATTAAGGGAA+TGG | 0.487369 | 3_3:+71912949 | None:intergenic |
| GTTTCTCCATGCCTTGTGAA+AGG | 0.488025 | 3_3:+71911534 | None:intergenic |
| GATGCTTCTCATGGTATCCT+AGG | 0.490549 | 3_3:-71912802 | Msa0469890:CDS |
| GCAAGGTTTCCTGCCGAAGA+TGG | 0.491320 | 3_3:+71911093 | None:intergenic |
| TTTCTCCATGCCTTGTGAAA+GGG | 0.491745 | 3_3:+71911535 | None:intergenic |
| AAGATAGCTGTAGCTTCTAA+AGG | 0.493814 | 3_3:-71913848 | Msa0469890:intron |
| AGCTAATAGACCTATTGATA+AGG | 0.501170 | 3_3:-71912755 | Msa0469890:intron |
| CTCGCTGATAGCGTAGCAGC+TGG | 0.502070 | 3_3:-71911500 | Msa0469890:CDS |
| CAGGGAATGTATATGGGTGG+TGG | 0.504131 | 3_3:-71912278 | Msa0469890:CDS |
| AAGTCCGCCTCATCAATTAA+GGG | 0.508625 | 3_3:+71912944 | None:intergenic |
| ATTGACAGAGCAACAACGAT+TGG | 0.518816 | 3_3:-71911600 | Msa0469890:CDS |
| TATGAGTCTCTCTTTGAAGA+TGG | 0.519256 | 3_3:-71913948 | Msa0469890:five_prime_UTR |
| ACAAACCAACCTGGATTCAC+AGG | 0.524884 | 3_3:+71912224 | None:intergenic |
| TCGCCCTTCTGAGCTTCTCA+AGG | 0.526161 | 3_3:-71911858 | Msa0469890:intron |
| TGACATAGAGCTCAGGATGC+TGG | 0.526532 | 3_3:-71912014 | Msa0469890:CDS |
| ACAGGCTGACCATCTTCGGC+AGG | 0.532331 | 3_3:-71911102 | Msa0469890:intron |
| TTATAGAAAGTTGAAATGGA+TGG | 0.532934 | 3_3:+71914095 | None:intergenic |
| CAGATTAATATGTGGGGAGA+AGG | 0.534968 | 3_3:-71913001 | Msa0469890:CDS |
| ATCACCTTGAGAAGCTCAGA+AGG | 0.537726 | 3_3:+71911854 | None:intergenic |
| TCCACAGATGGCTACTGCAA+TGG | 0.537758 | 3_3:-71911453 | Msa0469890:CDS |
| AGAATATTTCCAACGCCTGA+GGG | 0.537877 | 3_3:-71911012 | Msa0469890:CDS |
| AGGAATTGCAGCCTTTGAGA+TGG | 0.538267 | 3_3:-71912110 | Msa0469890:CDS |
| AAACTGCAGGGAATGTATAT+GGG | 0.538541 | 3_3:-71912284 | Msa0469890:intron |
| TGAGCAAAACCGGCAAATCT+CGG | 0.539595 | 3_3:-71912068 | Msa0469890:CDS |
| AGATGCCCTTTCACAAGGCA+TGG | 0.540096 | 3_3:-71911540 | Msa0469890:CDS |
| GTTGGTAACAAGATTTGAGC+GGG | 0.544320 | 3_3:-71913878 | Msa0469890:five_prime_UTR |
| GCTCGAACGTGTTAGACAGC+AGG | 0.550918 | 3_3:-71912413 | Msa0469890:intron |
| TATTCACCAGATTAATATGT+GGG | 0.557449 | 3_3:-71913008 | Msa0469890:CDS |
| TGTTCGCGACATTTGTTGCA+AGG | 0.557667 | 3_3:+71911076 | None:intergenic |
| TTGAGATGGAGTATGGACAT+TGG | 0.559206 | 3_3:-71912096 | Msa0469890:CDS |
| CTATTCACCAGATTAATATG+TGG | 0.559375 | 3_3:-71913009 | Msa0469890:CDS |
| ATAGTGAGCTCAAAGCCCTC+AGG | 0.562814 | 3_3:+71910997 | None:intergenic |
| GCAGCTGGACAATTCATTGA+AGG | 0.563520 | 3_3:-71911485 | Msa0469890:CDS |
| AGGGAATGTATATGGGTGGT+GGG | 0.568452 | 3_3:-71912277 | Msa0469890:CDS |
| GAGAATATTTCCAACGCCTG+AGG | 0.568747 | 3_3:-71911013 | Msa0469890:CDS |
| GGAGAAGGCTTCAAAAGTAA+TGG | 0.571903 | 3_3:-71912986 | Msa0469890:CDS |
| GACGGCGAATTCATGCTCAA+TGG | 0.573598 | 3_3:+71913073 | None:intergenic |
| TCTCCACAACAAAAGACTGC+AGG | 0.574821 | 3_3:+71910819 | None:intergenic |
| CTTGTTGACATGATTGTCCA+AGG | 0.580404 | 3_3:+71911567 | None:intergenic |
| TCCATTGCAGTAGCCATCTG+TGG | 0.581181 | 3_3:+71911452 | None:intergenic |
| ATCCATTCCCTTAATTGATG+AGG | 0.582525 | 3_3:-71912951 | Msa0469890:CDS |
| TGTAATGTTATTGGAGAATG+GGG | 0.582747 | 3_3:+71914129 | None:intergenic |
| AATATGAAACGTGATGAGTA+TGG | 0.582987 | 3_3:-71910907 | Msa0469890:three_prime_UTR |
| TAGTCAGAGGATGCTTCTCA+TGG | 0.584672 | 3_3:-71912811 | Msa0469890:CDS |
| CGATTGGATATCGATAACCT+TGG | 0.584683 | 3_3:-71911584 | Msa0469890:CDS |
| AGGAACTTATATTCCACAGA+TGG | 0.586141 | 3_3:-71911465 | Msa0469890:CDS |
| ATTGAAGACTGATTTAATTG+CGG | 0.586307 | 3_3:-71913107 | Msa0469890:five_prime_UTR |
| CATTCCCTTAATTGATGAGG+CGG | 0.591538 | 3_3:-71912948 | Msa0469890:CDS |
| GTATTAGTGACATAGAGCTC+AGG | 0.591773 | 3_3:-71912021 | Msa0469890:CDS |
| TATTGGAGAATGGGGAGTGG+TGG | 0.592334 | 3_3:+71914137 | None:intergenic |
| ATAGAAAGTTGAAATGGATG+GGG | 0.597213 | 3_3:+71914097 | None:intergenic |
| CTCAAATCTTGTTACCAACA+TGG | 0.598716 | 3_3:+71913882 | None:intergenic |
| AAATTAGTCTGTGTGAAAGT+TGG | 0.599465 | 3_3:-71910690 | Msa0469890:three_prime_UTR |
| ATTGGTCATCATCACCATGT+TGG | 0.602722 | 3_3:-71913896 | Msa0469890:five_prime_UTR |
| TGTTATTGGAGAATGGGGAG+TGG | 0.606277 | 3_3:+71914134 | None:intergenic |
| GCAGAAGATGCCCTTTCACA+AGG | 0.607214 | 3_3:-71911545 | Msa0469890:CDS |
| TCAAAACCATATACAATGTG+TGG | 0.611088 | 3_3:-71910862 | Msa0469890:three_prime_UTR |
| GTCTTGCAACAAGACTAAGC+AGG | 0.618652 | 3_3:+71910954 | None:intergenic |
| CAAGACTAAGCAGGTTCTCG+GGG | 0.624393 | 3_3:+71910963 | None:intergenic |
| GCAAACATCGAGCTGACTGA+CGG | 0.633030 | 3_3:+71911045 | None:intergenic |
| GATTAAATATGCAGATACAA+AGG | 0.638966 | 3_3:-71912636 | Msa0469890:intron |
| GAGGAAACAAACTGTGCGGA+CGG | 0.640938 | 3_3:+71913055 | None:intergenic |
| ATGTCCATACTCCATCTCAA+AGG | 0.641308 | 3_3:+71912099 | None:intergenic |
| TTTATGTGATGTCCGGCATG+TGG | 0.642596 | 3_3:-71911922 | Msa0469890:CDS |
| ATACACACTCATCCTTCTCG+AGG | 0.650671 | 3_3:+71913036 | None:intergenic |
| TGTTGGTAACAAGATTTGAG+CGG | 0.659293 | 3_3:-71913879 | Msa0469890:five_prime_UTR |
| CACAAGGCATGGAGAAACTG+CGG | 0.659798 | 3_3:-71911529 | Msa0469890:CDS |
| TCACCTTGAGAAGCTCAGAA+GGG | 0.664994 | 3_3:+71911855 | None:intergenic |
| CTGCAGGGAATGTATATGGG+TGG | 0.681880 | 3_3:-71912281 | Msa0469890:intron |
| ATTCACCAGATTAATATGTG+GGG | 0.681960 | 3_3:-71913007 | Msa0469890:CDS |
| GTCCGGCATGTGGAAAACAA+CGG | 0.755517 | 3_3:-71911912 | Msa0469890:CDS |
| TCTCGAGGAAACAAACTGTG+CGG | 0.757278 | 3_3:+71913051 | None:intergenic |
| AGACTGATTTAATTGCGGCG+CGG | 0.780685 | 3_3:-71913102 | Msa0469890:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTACAATATAAATATAAAAA+TGG | + | chr3_3:71910855-71910874 | None:intergenic | 10.0% |
| !!! | ATTAATTTTAGTACAAATAT+AGG | + | chr3_3:71911313-71911332 | None:intergenic | 10.0% |
| !! | TTTATTAAATTGAAAAGTAA+TGG | + | chr3_3:71913487-71913506 | None:intergenic | 10.0% |
| !!! | GTTTGTAAATAAATTAATTT+TGG | - | chr3_3:71914094-71914113 | Msa0469890:five_prime_UTR | 10.0% |
| !! | AATATTATAGAAAGTTGAAA+TGG | + | chr3_3:71910766-71910785 | None:intergenic | 15.0% |
| !! | AATATAAAAATGGAAATGAA+AGG | + | chr3_3:71910845-71910864 | None:intergenic | 15.0% |
| !! | ATTAATATAATTCTAATTCG+AGG | - | chr3_3:71911092-71911111 | Msa0469890:CDS | 15.0% |
| !! | TTTAATTCCATATTCAATTA+TGG | - | chr3_3:71913153-71913172 | Msa0469890:intron | 15.0% |
| !!! | GTATATGTTTATTTTATAAC+CGG | - | chr3_3:71913639-71913658 | Msa0469890:intron | 15.0% |
| !!! | TATATGTTTATTTTATAACC+GGG | - | chr3_3:71913640-71913659 | Msa0469890:intron | 15.0% |
| !!! | ATAAGATAGATATATGGTTT+TGG | + | chr3_3:71911164-71911183 | None:intergenic | 20.0% |
| !! | CATATCATAAGATAGATATA+TGG | + | chr3_3:71911170-71911189 | None:intergenic | 20.0% |
| !!! | TAACTGGTCTATAAAAAATT+TGG | - | chr3_3:71911278-71911297 | Msa0469890:intron | 20.0% |
| !!! | TACAATTTTATCATCAAATC+AGG | + | chr3_3:71911350-71911369 | None:intergenic | 20.0% |
| !!! | CAGAAAAAAAAGTACAAAAT+AGG | + | chr3_3:71911417-71911436 | None:intergenic | 20.0% |
| !!! | CTATTTTGTACTTTTTTTTC+TGG | - | chr3_3:71911415-71911434 | Msa0469890:intron | 20.0% |
| !! | TTTATTGCCTATTAAAATCA+AGG | - | chr3_3:71911467-71911486 | Msa0469890:CDS | 20.0% |
| !!! | TGAAATTCCTTGATTTTAAT+AGG | + | chr3_3:71911477-71911496 | None:intergenic | 20.0% |
| !! | TACTAAAAAAGTTGAATAAG+TGG | - | chr3_3:71911512-71911531 | Msa0469890:CDS | 20.0% |
| !! | TATAAAACATGAATCCAATT+TGG | + | chr3_3:71912018-71912037 | None:intergenic | 20.0% |
| !! | GACAAATTTATAATGTAGTA+TGG | - | chr3_3:71913179-71913198 | Msa0469890:intron | 20.0% |
| !! | AAATTTATAATGTAGTATGG+TGG | - | chr3_3:71913182-71913201 | Msa0469890:intron | 20.0% |
| !! | AGTTAAATATGTGATTCTAA+TGG | + | chr3_3:71913718-71913737 | None:intergenic | 20.0% |
| ! | TTGTAATGTTATTGGAGAAT+GGG | + | chr3_3:71910729-71910748 | None:intergenic | 25.0% |
| ! | TTTGTAATGTTATTGGAGAA+TGG | + | chr3_3:71910730-71910749 | None:intergenic | 25.0% |
| !!! | AAGAGTGTTTGTAATGTTAT+TGG | + | chr3_3:71910737-71910756 | None:intergenic | 25.0% |
| ! | TATAGAAAGTTGAAATGGAT+GGG | + | chr3_3:71910761-71910780 | None:intergenic | 25.0% |
| ! | TTATAGAAAGTTGAAATGGA+TGG | + | chr3_3:71910762-71910781 | None:intergenic | 25.0% |
| !!! | CAAAAAAAAGGTTGTTGTTT+TGG | + | chr3_3:71911240-71911259 | None:intergenic | 25.0% |
| ! | TAGAGTATAATCTGTTTCAT+AGG | - | chr3_3:71911373-71911392 | Msa0469890:intron | 25.0% |
| !! | ATTGAAGACTGATTTAATTG+CGG | - | chr3_3:71911747-71911766 | Msa0469890:intron | 25.0% |
| ! | TATTCACCAGATTAATATGT+GGG | - | chr3_3:71911846-71911865 | Msa0469890:intron | 25.0% |
| ! | ATTCTGCTTATTAACCAAAT+TGG | - | chr3_3:71912001-71912020 | Msa0469890:CDS | 25.0% |
| ! | GAACATGAAGAATTTGTATT+CGG | - | chr3_3:71912125-71912144 | Msa0469890:intron | 25.0% |
| ! | GATTAAATATGCAGATACAA+AGG | - | chr3_3:71912218-71912237 | Msa0469890:intron | 25.0% |
| !! | TCTAATAATATGTGTTTTGC+TGG | - | chr3_3:71912606-71912625 | Msa0469890:CDS | 25.0% |
| ! | TTGATTTAATTGCAGATTCT+TGG | - | chr3_3:71913216-71913235 | Msa0469890:intron | 25.0% |
| ! | GATAATAAGTTAGTGACAAA+TGG | + | chr3_3:71913561-71913580 | None:intergenic | 25.0% |
| ! | AAACATACATGATTTGATCA+CGG | + | chr3_3:71913603-71913622 | None:intergenic | 25.0% |
| !! | ATTTTGGATGCATGTATATT+TGG | - | chr3_3:71914110-71914129 | Msa0469890:five_prime_UTR | 25.0% |
| !! | GAAATGTGTATTTTTGTGCT+TGG | + | chr3_3:71910695-71910714 | None:intergenic | 30.0% |
| TGTAATGTTATTGGAGAATG+GGG | + | chr3_3:71910728-71910747 | None:intergenic | 30.0% | |
| ATAGAAAGTTGAAATGGATG+GGG | + | chr3_3:71910760-71910779 | None:intergenic | 30.0% | |
| ATTCTAATTCGAGGAAAACA+AGG | - | chr3_3:71911101-71911120 | Msa0469890:CDS | 30.0% | |
| AGGAAAACAAGGAAACATAA+CGG | - | chr3_3:71911112-71911131 | Msa0469890:intron | 30.0% | |
| CAATCAAAGACAAAAGACAA+AGG | + | chr3_3:71911217-71911236 | None:intergenic | 30.0% | |
| !!! | ACCTTTTTTTTGTCAGAGAA+AGG | - | chr3_3:71911248-71911267 | Msa0469890:intron | 30.0% |
| TCCTTTCTCTGACAAAAAAA+AGG | + | chr3_3:71911252-71911271 | None:intergenic | 30.0% | |
| AGAGAAAGGAAAGAAATAAC+TGG | - | chr3_3:71911262-71911281 | Msa0469890:intron | 30.0% | |
| !!! | TTTTTTAGTAAGTGAGAGAG+AGG | + | chr3_3:71911502-71911521 | None:intergenic | 30.0% |
| AAGTTTCTGCAAAATCACAA+TGG | + | chr3_3:71911645-71911664 | None:intergenic | 30.0% | |
| AAAGTTCCTGCAGTATAAAA+GGG | + | chr3_3:71911680-71911699 | None:intergenic | 30.0% | |
| TAAAGTTCCTGCAGTATAAA+AGG | + | chr3_3:71911681-71911700 | None:intergenic | 30.0% | |
| TCTATAGCAAACTGCAATTA+AGG | + | chr3_3:71911722-71911741 | None:intergenic | 30.0% | |
| !! | TTAATTGCAGTTTGCTATAG+AGG | - | chr3_3:71911721-71911740 | Msa0469890:intron | 30.0% |
| CACATATTAATCTGGTGAAT+AGG | + | chr3_3:71911847-71911866 | None:intergenic | 30.0% | |
| CTATTCACCAGATTAATATG+TGG | - | chr3_3:71911845-71911864 | Msa0469890:intron | 30.0% | |
| ATTCACCAGATTAATATGTG+GGG | - | chr3_3:71911847-71911866 | Msa0469890:intron | 30.0% | |
| !! | CAAAGGTTGATTTGTTTCAT+CGG | - | chr3_3:71911963-71911982 | Msa0469890:CDS | 30.0% |
| ! | GTTTTATAATGCTTAGTCAG+AGG | - | chr3_3:71912030-71912049 | Msa0469890:CDS | 30.0% |
| AGCTAATAGACCTATTGATA+AGG | - | chr3_3:71912099-71912118 | Msa0469890:CDS | 30.0% | |
| CATGTTCTAACCTTATCAAT+AGG | + | chr3_3:71912112-71912131 | None:intergenic | 30.0% | |
| ! | GATACCATGCTTTCAAATTT+TGG | - | chr3_3:71912168-71912187 | Msa0469890:intron | 30.0% |
| ACATCCAAAATTTGAAAGCA+TGG | + | chr3_3:71912175-71912194 | None:intergenic | 30.0% | |
| !!! | TTAAAACCTTTTTTCGCAGA+CGG | + | chr3_3:71912279-71912298 | None:intergenic | 30.0% |
| TTTCTATCACTTTATGTCAC+CGG | - | chr3_3:71912504-71912523 | Msa0469890:intron | 30.0% | |
| !!! | GATGTTTTTTATGTGATGTC+CGG | - | chr3_3:71912925-71912944 | Msa0469890:CDS | 30.0% |
| ! | GAAAGATTTTTCTTGTGGAT+CGG | - | chr3_3:71912967-71912986 | Msa0469890:CDS | 30.0% |
| GTTATCCATAGAATGATAGA+AGG | - | chr3_3:71913054-71913073 | Msa0469890:CDS | 30.0% | |
| TGTCTTAATGTGAGAAAGAA+TGG | - | chr3_3:71913097-71913116 | Msa0469890:five_prime_UTR | 30.0% | |
| GTCTTAATGTGAGAAAGAAT+GGG | - | chr3_3:71913098-71913117 | Msa0469890:five_prime_UTR | 30.0% | |
| TGTCATGCCATAATTGAATA+TGG | + | chr3_3:71913163-71913182 | None:intergenic | 30.0% | |
| TAATGGTTATCAAGAAAGCT+AGG | + | chr3_3:71913470-71913489 | None:intergenic | 30.0% | |
| !!! | CAAGCTATTTTTTTCAGAAG+GGG | + | chr3_3:71913694-71913713 | None:intergenic | 30.0% |
| !!! | CCAAGCTATTTTTTTCAGAA+GGG | + | chr3_3:71913695-71913714 | None:intergenic | 30.0% |
| AATATGAAACGTGATGAGTA+TGG | - | chr3_3:71913947-71913966 | Msa0469890:five_prime_UTR | 30.0% | |
| !! | ATGAGTATGGTCATTTTCAT+TGG | - | chr3_3:71913960-71913979 | Msa0469890:five_prime_UTR | 30.0% |
| TCAAAACCATATACAATGTG+TGG | - | chr3_3:71913992-71914011 | Msa0469890:five_prime_UTR | 30.0% | |
| ! | AAATTAGTCTGTGTGAAAGT+TGG | - | chr3_3:71914164-71914183 | Msa0469890:five_prime_UTR | 30.0% |
| ! | TATGAGTCTCTCTTTGAAGA+TGG | - | chr3_3:71910906-71910925 | Msa0469890:three_prime_UTR | 35.0% |
| !!! | TCATTAGTTCTGCAGTTTTG+TGG | - | chr3_3:71910934-71910953 | Msa0469890:three_prime_UTR | 35.0% |
| CTCAAATCTTGTTACCAACA+TGG | + | chr3_3:71910975-71910994 | None:intergenic | 35.0% | |
| !! | TGTTGGTAACAAGATTTGAG+CGG | - | chr3_3:71910975-71910994 | Msa0469890:CDS | 35.0% |
| AAGATAGCTGTAGCTTCTAA+AGG | - | chr3_3:71911006-71911025 | Msa0469890:CDS | 35.0% | |
| ATCCAAACATGCACTAAGAA+GGG | + | chr3_3:71911538-71911557 | None:intergenic | 35.0% | |
| TATCCAAACATGCACTAAGA+AGG | + | chr3_3:71911539-71911558 | None:intergenic | 35.0% | |
| ! | ACTGTGAGTCACTATGATTT+TGG | - | chr3_3:71911580-71911599 | Msa0469890:CDS | 35.0% |
| TTGCAGCTTCAACAAAATCA+CGG | - | chr3_3:71911616-71911635 | Msa0469890:CDS | 35.0% | |
| ! | ATGTTACCCTTTTATACTGC+AGG | - | chr3_3:71911671-71911690 | Msa0469890:intron | 35.0% |
| ATCCATTCCCTTAATTGATG+AGG | - | chr3_3:71911903-71911922 | Msa0469890:CDS | 35.0% | |
| ! | CTTGAAGTTTGATAGTAGTC+AGG | - | chr3_3:71911930-71911949 | Msa0469890:CDS | 35.0% |
| AGTCAGGTAAATGTTTGCAA+AGG | - | chr3_3:71911946-71911965 | Msa0469890:CDS | 35.0% | |
| ! | CATACTTGTTAGATGTTCCT+AGG | + | chr3_3:71912072-71912091 | None:intergenic | 35.0% |
| GGTGACATAAAGTGATAGAA+AGG | + | chr3_3:71912505-71912524 | None:intergenic | 35.0% | |
| TTCCTTTCTCTAATACCTTG+AGG | - | chr3_3:71912541-71912560 | Msa0469890:intron | 35.0% | |
| AAAACTGCAGGGAATGTATA+TGG | - | chr3_3:71912569-71912588 | Msa0469890:intron | 35.0% | |
| AAACTGCAGGGAATGTATAT+GGG | - | chr3_3:71912570-71912589 | Msa0469890:intron | 35.0% | |
| AGTTCTTGCATTGCATTCTA+AGG | - | chr3_3:71912707-71912726 | Msa0469890:intron | 35.0% | |
| TTCGATAGATTTCAGCATAG+TGG | + | chr3_3:71912882-71912901 | None:intergenic | 35.0% | |
| TTAATGTGAGAAAGAATGGG+AGG | - | chr3_3:71913101-71913120 | Msa0469890:five_prime_UTR | 35.0% | |
| TCTGTCAATGGTTCAATCAT+TGG | + | chr3_3:71913243-71913262 | None:intergenic | 35.0% | |
| AGGAACTTATATTCCACAGA+TGG | - | chr3_3:71913389-71913408 | Msa0469890:intron | 35.0% | |
| TAGTATGACATGTTGCGAAA+AGG | + | chr3_3:71913519-71913538 | None:intergenic | 35.0% | |
| ATGTGTTGTAACAACAATCC+CGG | + | chr3_3:71913661-71913680 | None:intergenic | 35.0% | |
| ! | CCCTTCTGAAAAAAATAGCT+TGG | - | chr3_3:71913692-71913711 | Msa0469890:intron | 35.0% |
| !!! | GCCAAGCTATTTTTTTCAGA+AGG | + | chr3_3:71913696-71913715 | None:intergenic | 35.0% |
| AACTGTGATTCGTGTTTAAC+AGG | - | chr3_3:71913734-71913753 | Msa0469890:intron | 35.0% | |
| !!! | GTATATGGTTTTGACACTTG+TGG | + | chr3_3:71913986-71914005 | None:intergenic | 35.0% |
| CCTAAACCACACATTGTATA+TGG | + | chr3_3:71914001-71914020 | None:intergenic | 35.0% | |
| CCATATACAATGTGTGGTTT+AGG | - | chr3_3:71913998-71914017 | Msa0469890:five_prime_UTR | 35.0% | |
| ! | GACTGCTCATTTTATGCAAT+AGG | - | chr3_3:71914070-71914089 | Msa0469890:five_prime_UTR | 35.0% |
| !! | GTTCTGCAGTTTTGTGGTAT+TGG | - | chr3_3:71910940-71910959 | Msa0469890:three_prime_UTR | 40.0% |
| ATTGGTCATCATCACCATGT+TGG | - | chr3_3:71910958-71910977 | Msa0469890:exon | 40.0% | |
| !! | GTTGGTAACAAGATTTGAGC+GGG | - | chr3_3:71910976-71910995 | Msa0469890:CDS | 40.0% |
| GTTTGGATAGACTGTGAGAT+TGG | - | chr3_3:71911550-71911569 | Msa0469890:CDS | 40.0% | |
| CTTCTCCCCACATATTAATC+TGG | + | chr3_3:71911855-71911874 | None:intergenic | 40.0% | |
| CAGATTAATATGTGGGGAGA+AGG | - | chr3_3:71911853-71911872 | Msa0469890:intron | 40.0% | |
| GGAGAAGGCTTCAAAAGTAA+TGG | - | chr3_3:71911868-71911887 | Msa0469890:CDS | 40.0% | |
| CATTCCCTTAATTGATGAGG+CGG | - | chr3_3:71911906-71911925 | Msa0469890:CDS | 40.0% | |
| AAGTCCGCCTCATCAATTAA+GGG | + | chr3_3:71911913-71911932 | None:intergenic | 40.0% | |
| CATTTCTGACATTGCCTTAC+AGG | - | chr3_3:71912363-71912382 | Msa0469890:intron | 40.0% | |
| ! | TCGTTTGAAGTTAGTGCAGT+TGG | - | chr3_3:71912411-71912430 | Msa0469890:intron | 40.0% |
| AGGAAAAAGAAAGACGATGC+CGG | + | chr3_3:71912526-71912545 | None:intergenic | 40.0% | |
| ! | TGCCTCAAGGTATTAGAGAA+AGG | + | chr3_3:71912546-71912565 | None:intergenic | 40.0% |
| TTGAGGCAACAAAAACTGCA+GGG | - | chr3_3:71912558-71912577 | Msa0469890:intron | 40.0% | |
| ATGTCCATACTCCATCTCAA+AGG | + | chr3_3:71912758-71912777 | None:intergenic | 40.0% | |
| TTGAGATGGAGTATGGACAT+TGG | - | chr3_3:71912758-71912777 | Msa0469890:CDS | 40.0% | |
| TGAGATGGAGTATGGACATT+GGG | - | chr3_3:71912759-71912778 | Msa0469890:CDS | 40.0% | |
| !! | ATTGGGTTGATGAGCAAAAC+CGG | - | chr3_3:71912776-71912795 | Msa0469890:CDS | 40.0% |
| TTCTCATTTCCGAGATTTGC+CGG | + | chr3_3:71912798-71912817 | None:intergenic | 40.0% | |
| GTATTAGTGACATAGAGCTC+AGG | - | chr3_3:71912833-71912852 | Msa0469890:intron | 40.0% | |
| ! | CGGCTGAAAGATTTTTCTTG+TGG | - | chr3_3:71912962-71912981 | Msa0469890:CDS | 40.0% |
| ! | AGATTTTTCTTGTGGATCGG+TGG | - | chr3_3:71912970-71912989 | Msa0469890:CDS | 40.0% |
| TCTCGCCTTCTATCATTCTA+TGG | + | chr3_3:71913062-71913081 | None:intergenic | 40.0% | |
| AATCGTTGTTGCTCTGTCAA+TGG | + | chr3_3:71913255-71913274 | None:intergenic | 40.0% | |
| ATTGACAGAGCAACAACGAT+TGG | - | chr3_3:71913254-71913273 | Msa0469890:intron | 40.0% | |
| CGATTGGATATCGATAACCT+TGG | - | chr3_3:71913270-71913289 | Msa0469890:intron | 40.0% | |
| CTTGTTGACATGATTGTCCA+AGG | + | chr3_3:71913290-71913309 | None:intergenic | 40.0% | |
| TTTCTCCATGCCTTGTGAAA+GGG | + | chr3_3:71913322-71913341 | None:intergenic | 40.0% | |
| AGAAAGCTAGGTACAATACC+TGG | + | chr3_3:71913458-71913477 | None:intergenic | 40.0% | |
| CATGATTTGATCACGGAGTT+CGG | + | chr3_3:71913596-71913615 | None:intergenic | 40.0% | |
| TTTAACAGGCTGACCATCTT+CGG | - | chr3_3:71913748-71913767 | Msa0469890:intron | 40.0% | |
| AGAATATTTCCAACGCCTGA+GGG | - | chr3_3:71913842-71913861 | Msa0469890:intron | 40.0% | |
| AACAAGACTAAGCAGGTTCT+CGG | + | chr3_3:71913896-71913915 | None:intergenic | 40.0% | |
| ! | TTTCCTGCAGTCTTTTGTTG+TGG | - | chr3_3:71914032-71914051 | Msa0469890:five_prime_UTR | 40.0% |
| TGTTATTGGAGAATGGGGAG+TGG | + | chr3_3:71910723-71910742 | None:intergenic | 45.0% | |
| ! | AGACTGATTTAATTGCGGCG+CGG | - | chr3_3:71911752-71911771 | Msa0469890:intron | 45.0% |
| TCTCGAGGAAACAAACTGTG+CGG | + | chr3_3:71911806-71911825 | None:intergenic | 45.0% | |
| ! | CACAGTTTGTTTCCTCGAGA+AGG | - | chr3_3:71911806-71911825 | Msa0469890:intron | 45.0% |
| ATACACACTCATCCTTCTCG+AGG | + | chr3_3:71911821-71911840 | None:intergenic | 45.0% | |
| CGCCTCATCAATTAAGGGAA+TGG | + | chr3_3:71911908-71911927 | None:intergenic | 45.0% | |
| CAAGTCCGCCTCATCAATTA+AGG | + | chr3_3:71911914-71911933 | None:intergenic | 45.0% | |
| TAGTCAGAGGATGCTTCTCA+TGG | - | chr3_3:71912043-71912062 | Msa0469890:CDS | 45.0% | |
| GATGCTTCTCATGGTATCCT+AGG | - | chr3_3:71912052-71912071 | Msa0469890:CDS | 45.0% | |
| TAAGAGCCGTCTGCGAAAAA+AGG | - | chr3_3:71912270-71912289 | Msa0469890:CDS | 45.0% | |
| ! | CTGCAGTTTTTGTTGCCTCA+AGG | + | chr3_3:71912559-71912578 | None:intergenic | 45.0% |
| CTTGAGGCAACAAAAACTGC+AGG | - | chr3_3:71912557-71912576 | Msa0469890:intron | 45.0% | |
| AGGGAATGTATATGGGTGGT+GGG | - | chr3_3:71912577-71912596 | Msa0469890:intron | 45.0% | |
| !! | AATGTATATGGGTGGTGGGT+TGG | - | chr3_3:71912581-71912600 | Msa0469890:intron | 45.0% |
| ACAAACCAACCTGGATTCAC+AGG | + | chr3_3:71912633-71912652 | None:intergenic | 45.0% | |
| AGCATCTTCACAAACCAACC+TGG | + | chr3_3:71912642-71912661 | None:intergenic | 45.0% | |
| GCTGCAATTCCTACGGATAA+GGG | + | chr3_3:71912736-71912755 | None:intergenic | 45.0% | |
| CTCAAAGGCTGCAATTCCTA+CGG | + | chr3_3:71912743-71912762 | None:intergenic | 45.0% | |
| ! | AGGAATTGCAGCCTTTGAGA+TGG | - | chr3_3:71912744-71912763 | Msa0469890:intron | 45.0% |
| TGAGCAAAACCGGCAAATCT+CGG | - | chr3_3:71912786-71912805 | Msa0469890:CDS | 45.0% | |
| TTTATGTGATGTCCGGCATG+TGG | - | chr3_3:71912932-71912951 | Msa0469890:CDS | 45.0% | |
| TCACCTTGAGAAGCTCAGAA+GGG | + | chr3_3:71913002-71913021 | None:intergenic | 45.0% | |
| ATCACCTTGAGAAGCTCAGA+AGG | + | chr3_3:71913003-71913022 | None:intergenic | 45.0% | |
| GTTTCTCCATGCCTTGTGAA+AGG | + | chr3_3:71913323-71913342 | None:intergenic | 45.0% | |
| GCAGCTGGACAATTCATTGA+AGG | - | chr3_3:71913369-71913388 | Msa0469890:intron | 45.0% | |
| ! | TCTTGTGAGCTTTGTGAACC+AGG | - | chr3_3:71913437-71913456 | Msa0469890:intron | 45.0% |
| ! | TGTTCGCGACATTTGTTGCA+AGG | + | chr3_3:71913781-71913800 | None:intergenic | 45.0% |
| AGCTCGATGTTTGCTTGCTT+TGG | - | chr3_3:71913818-71913837 | Msa0469890:intron | 45.0% | |
| GCTCGATGTTTGCTTGCTTT+GGG | - | chr3_3:71913819-71913838 | Msa0469890:intron | 45.0% | |
| GAGAATATTTCCAACGCCTG+AGG | - | chr3_3:71913841-71913860 | Msa0469890:intron | 45.0% | |
| ACAAGACTAAGCAGGTTCTC+GGG | + | chr3_3:71913895-71913914 | None:intergenic | 45.0% | |
| GTCTTGCAACAAGACTAAGC+AGG | + | chr3_3:71913903-71913922 | None:intergenic | 45.0% | |
| TCTCCACAACAAAAGACTGC+AGG | + | chr3_3:71914038-71914057 | None:intergenic | 45.0% | |
| TATTGGAGAATGGGGAGTGG+TGG | + | chr3_3:71910720-71910739 | None:intergenic | 50.0% | |
| GGCCCTTCTTAGTGCATGTT+TGG | - | chr3_3:71911533-71911552 | Msa0469890:CDS | 50.0% | |
| GACGGCGAATTCATGCTCAA+TGG | + | chr3_3:71911784-71911803 | None:intergenic | 50.0% | |
| GAGGAAACAAACTGTGCGGA+CGG | + | chr3_3:71911802-71911821 | None:intergenic | 50.0% | |
| CTGCTGCACATAAGCCTGTA+AGG | + | chr3_3:71912380-71912399 | None:intergenic | 50.0% | |
| AACGTGTTAGACAGCAGGTG+TGG | - | chr3_3:71912446-71912465 | Msa0469890:CDS | 50.0% | |
| ACGTGTTAGACAGCAGGTGT+GGG | - | chr3_3:71912447-71912466 | Msa0469890:CDS | 50.0% | |
| CTGCAGGGAATGTATATGGG+TGG | - | chr3_3:71912573-71912592 | Msa0469890:intron | 50.0% | |
| CAGGGAATGTATATGGGTGG+TGG | - | chr3_3:71912576-71912595 | Msa0469890:intron | 50.0% | |
| TTTGCTGGACCTGTGAATCC+AGG | - | chr3_3:71912621-71912640 | Msa0469890:CDS | 50.0% | |
| CTAAGGACACCCTTATCCGT+AGG | - | chr3_3:71912724-71912743 | Msa0469890:intron | 50.0% | |
| GGCTGCAATTCCTACGGATA+AGG | + | chr3_3:71912737-71912756 | None:intergenic | 50.0% | |
| !! | GCAGCCTTTGAGATGGAGTA+TGG | - | chr3_3:71912751-71912770 | Msa0469890:intron | 50.0% |
| TGACATAGAGCTCAGGATGC+TGG | - | chr3_3:71912840-71912859 | Msa0469890:intron | 50.0% | |
| GTCCGGCATGTGGAAAACAA+CGG | - | chr3_3:71912942-71912961 | Msa0469890:CDS | 50.0% | |
| !! | AGCCGTTGTTTTCCACATGC+CGG | + | chr3_3:71912947-71912966 | None:intergenic | 50.0% |
| GCAGAAGATGCCCTTTCACA+AGG | - | chr3_3:71913309-71913328 | Msa0469890:intron | 50.0% | |
| AGATGCCCTTTCACAAGGCA+TGG | - | chr3_3:71913314-71913333 | Msa0469890:intron | 50.0% | |
| CACAAGGCATGGAGAAACTG+CGG | - | chr3_3:71913325-71913344 | Msa0469890:intron | 50.0% | |
| TCCACAGATGGCTACTGCAA+TGG | - | chr3_3:71913401-71913420 | Msa0469890:intron | 50.0% | |
| TCCATTGCAGTAGCCATCTG+TGG | + | chr3_3:71913405-71913424 | None:intergenic | 50.0% | |
| GCAAACATCGAGCTGACTGA+CGG | + | chr3_3:71913812-71913831 | None:intergenic | 50.0% | |
| ATAGTGAGCTCAAAGCCCTC+AGG | + | chr3_3:71913860-71913879 | None:intergenic | 50.0% | |
| !! | TGAGGGCTTTGAGCTCACTA+TGG | - | chr3_3:71913859-71913878 | Msa0469890:five_prime_UTR | 50.0% |
| CAAGACTAAGCAGGTTCTCG+GGG | + | chr3_3:71913894-71913913 | None:intergenic | 50.0% | |
| GCTCGAACGTGTTAGACAGC+AGG | - | chr3_3:71912441-71912460 | Msa0469890:CDS | 55.0% | |
| CGTGTTAGACAGCAGGTGTG+GGG | - | chr3_3:71912448-71912467 | Msa0469890:CDS | 55.0% | |
| CTGGACCTGTGAATCCAGGT+TGG | - | chr3_3:71912625-71912644 | Msa0469890:CDS | 55.0% | |
| ! | GAGCTCAGGATGCTGGTTGA+TGG | - | chr3_3:71912847-71912866 | Msa0469890:intron | 55.0% |
| TCGCCCTTCTGAGCTTCTCA+AGG | - | chr3_3:71912996-71913015 | Msa0469890:CDS | 55.0% | |
| GCAAGGTTTCCTGCCGAAGA+TGG | + | chr3_3:71913764-71913783 | None:intergenic | 55.0% | |
| ! | CTCGCTGATAGCGTAGCAGC+TGG | - | chr3_3:71913354-71913373 | Msa0469890:intron | 60.0% |
| ACAGGCTGACCATCTTCGGC+AGG | - | chr3_3:71913752-71913771 | Msa0469890:intron | 60.0% | |
| AGCTCAAAGCCCTCAGGCGT+TGG | + | chr3_3:71913854-71913873 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71910655 | 71914221 | 71910655 | ID=Msa0469890;Name=Msa0469890 |
| chr3_3 | mRNA | 71910655 | 71914221 | 71910655 | ID=Msa0469890-mRNA-1;Parent=Msa0469890;Name=Msa0469890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=432|1|1|1|0.87|0.88|9|313|363 |
| chr3_3 | exon | 71910655 | 71911120 | 71910655 | ID=Msa0469890-mRNA-1:exon:17781;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71911418 | 71911645 | 71911418 | ID=Msa0469890-mRNA-1:exon:17780;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71911859 | 71912130 | 71911859 | ID=Msa0469890-mRNA-1:exon:17779;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71912234 | 71912297 | 71912234 | ID=Msa0469890-mRNA-1:exon:17778;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71912414 | 71912491 | 71912414 | ID=Msa0469890-mRNA-1:exon:17777;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71912585 | 71912644 | 71912585 | ID=Msa0469890-mRNA-1:exon:17776;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71912756 | 71912830 | 71912756 | ID=Msa0469890-mRNA-1:exon:17775;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71912925 | 71913145 | 71912925 | ID=Msa0469890-mRNA-1:exon:17774;Parent=Msa0469890-mRNA-1 |
| chr3_3 | exon | 71913849 | 71914221 | 71913849 | ID=Msa0469890-mRNA-1:exon:17773;Parent=Msa0469890-mRNA-1 |
| chr3_3 | five_prime_UTR | 71913849 | 71914221 | 71913849 | ID=Msa0469890-mRNA-1:five_prime_utr;Parent=Msa0469890-mRNA-1 |
| chr3_3 | five_prime_UTR | 71913087 | 71913145 | 71913087 | ID=Msa0469890-mRNA-1:five_prime_utr;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71912925 | 71913086 | 71912925 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71912756 | 71912830 | 71912756 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71912585 | 71912644 | 71912585 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71912414 | 71912491 | 71912414 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71912234 | 71912297 | 71912234 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71911859 | 71912130 | 71911859 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71911418 | 71911645 | 71911418 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | CDS | 71910968 | 71911120 | 71910968 | ID=Msa0469890-mRNA-1:cds;Parent=Msa0469890-mRNA-1 |
| chr3_3 | three_prime_UTR | 71910655 | 71910967 | 71910655 | ID=Msa0469890-mRNA-1:three_prime_utr;Parent=Msa0469890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
