Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157500 | XP_003624458.1 | 97.179 | 390 | 11 | 0 | 1 | 390 | 1 | 390 | 0.0 | 791 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157500 | sp|O22800|COL14_ARATH | 36.058 | 416 | 205 | 11 | 5 | 385 | 12 | 401 | 9.89e-63 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157500 | G7KW76 | 97.179 | 390 | 11 | 0 | 1 | 390 | 1 | 390 | 0.0 | 791 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1157500 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605630 | Msa1157500 | 0.823621 | 1.255172e-53 | -8.615850e-47 |
| Msa0837930 | Msa1157500 | -0.816962 | 4.219215e-52 | -8.615850e-47 |
| Msa0140630 | Msa1157500 | 0.808684 | 2.744026e-50 | -8.615850e-47 |
| Msa0381500 | Msa1157500 | 0.816436 | 5.536859e-52 | -8.615850e-47 |
| Msa0402210 | Msa1157500 | 0.810076 | 1.379717e-50 | -8.615850e-47 |
| Msa0355140 | Msa1157500 | 0.818932 | 1.513809e-52 | -8.615850e-47 |
| Msa1130820 | Msa1157500 | -0.853710 | 1.995698e-61 | -8.615850e-47 |
| Msa1157500 | Msa1212190 | 0.804325 | 2.281038e-49 | -8.615850e-47 |
| Msa1157500 | Msa1212270 | 0.813314 | 2.725304e-51 | -8.615850e-47 |
| Msa1157500 | Msa1259910 | 0.808527 | 2.963993e-50 | -8.615850e-47 |
| Msa1157500 | Msa1406670 | -0.850116 | 2.090001e-60 | -8.615850e-47 |
| Msa1157500 | Msa1448870 | -0.851944 | 6.380129e-61 | -8.615850e-47 |
| Msa0483770 | Msa1157500 | 0.819005 | 1.457749e-52 | -8.615850e-47 |
| Msa0519950 | Msa1157500 | 0.806109 | 9.651259e-50 | -8.615850e-47 |
| Msa0550120 | Msa1157500 | 0.804292 | 2.317144e-49 | -8.615850e-47 |
| Msa0550130 | Msa1157500 | 0.816563 | 5.185357e-52 | -8.615850e-47 |
| Msa0867720 | Msa1157500 | 0.801424 | 9.063791e-49 | -8.615850e-47 |
| Msa0968610 | Msa1157500 | 0.815622 | 8.411527e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157500 | MtrunA17_Chr7g0251781 | 97.179 | 390 | 11 | 0 | 1 | 390 | 1 | 390 | 0.0 | 791 |
| Msa1157500 | MtrunA17_Chr7g0268691 | 47.445 | 137 | 54 | 4 | 4 | 129 | 19 | 148 | 7.53e-31 | 121 |
| Msa1157500 | MtrunA17_Chr7g0268691 | 55.556 | 63 | 26 | 1 | 322 | 382 | 307 | 369 | 7.79e-14 | 72.4 |
| Msa1157500 | MtrunA17_Chr5g0429341 | 42.727 | 110 | 57 | 2 | 1 | 110 | 1 | 104 | 2.32e-23 | 100 |
| Msa1157500 | MtrunA17_Chr3g0120711 | 39.568 | 139 | 76 | 3 | 1 | 138 | 1 | 132 | 2.89e-23 | 100 |
| Msa1157500 | MtrunA17_Chr3g0120711 | 56.061 | 66 | 29 | 0 | 318 | 383 | 331 | 396 | 1.32e-14 | 74.7 |
| Msa1157500 | MtrunA17_Chr2g0322941 | 43.269 | 104 | 51 | 1 | 5 | 108 | 44 | 139 | 4.31e-21 | 91.3 |
| Msa1157500 | MtrunA17_Chr1g0209071 | 34.188 | 117 | 68 | 2 | 1 | 117 | 1 | 108 | 2.34e-17 | 82.4 |
| Msa1157500 | MtrunA17_Chr1g0150471 | 37.113 | 97 | 55 | 1 | 5 | 95 | 6 | 102 | 1.18e-14 | 74.3 |
| Msa1157500 | MtrunA17_Chr2g0322951 | 73.333 | 45 | 12 | 0 | 341 | 385 | 92 | 136 | 2.40e-14 | 70.1 |
| Msa1157500 | MtrunA17_Chr3g0136701 | 35.644 | 101 | 59 | 1 | 5 | 99 | 6 | 106 | 4.04e-14 | 72.4 |
| Msa1157500 | MtrunA17_Chr4g0072871 | 37.634 | 93 | 52 | 2 | 5 | 97 | 22 | 108 | 3.93e-12 | 67.0 |
| Msa1157500 | MtrunA17_Chr4g0072871 | 36.559 | 93 | 54 | 1 | 293 | 385 | 255 | 342 | 1.11e-11 | 65.9 |
| Msa1157500 | MtrunA17_Chr7g0220721 | 32.990 | 97 | 59 | 2 | 5 | 101 | 26 | 116 | 4.88e-11 | 63.9 |
| Msa1157500 | MtrunA17_Chr7g0220721 | 68.293 | 41 | 13 | 0 | 345 | 385 | 331 | 371 | 7.18e-11 | 63.5 |
| Msa1157500 | MtrunA17_Chr3g0142221 | 32.520 | 123 | 61 | 3 | 1 | 107 | 1 | 117 | 9.39e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1157500 | AT2G33500.2 | 34.988 | 423 | 199 | 11 | 5 | 385 | 12 | 400 | 9.59e-64 | 209 |
| Msa1157500 | AT2G33500.1 | 36.058 | 416 | 205 | 11 | 5 | 385 | 12 | 401 | 1.01e-63 | 209 |
| Msa1157500 | AT1G28050.1 | 53.509 | 114 | 47 | 1 | 4 | 117 | 8 | 115 | 7.80e-37 | 139 |
| Msa1157500 | AT1G28050.1 | 39.785 | 186 | 87 | 6 | 215 | 385 | 254 | 429 | 5.00e-22 | 97.4 |
| Msa1157500 | AT2G47890.3 | 47.541 | 122 | 56 | 2 | 5 | 126 | 13 | 126 | 2.14e-28 | 113 |
| Msa1157500 | AT2G47890.2 | 47.541 | 122 | 56 | 2 | 5 | 126 | 13 | 126 | 2.19e-28 | 111 |
| Msa1157500 | AT2G47890.1 | 47.541 | 122 | 56 | 2 | 5 | 126 | 13 | 126 | 2.48e-28 | 114 |
| Msa1157500 | AT2G47890.1 | 62.745 | 51 | 19 | 0 | 335 | 385 | 281 | 331 | 1.99e-13 | 71.2 |
| Msa1157500 | AT5G48250.1 | 41.322 | 121 | 67 | 1 | 1 | 121 | 1 | 117 | 2.14e-25 | 106 |
| Msa1157500 | AT5G48250.1 | 61.224 | 49 | 19 | 0 | 337 | 385 | 312 | 360 | 7.28e-13 | 69.7 |
| Msa1157500 | AT1G68190.2 | 35.135 | 148 | 86 | 3 | 5 | 150 | 43 | 182 | 1.39e-21 | 95.9 |
| Msa1157500 | AT1G68190.1 | 35.135 | 148 | 86 | 3 | 5 | 150 | 14 | 153 | 1.41e-21 | 95.5 |
| Msa1157500 | AT1G68190.3 | 35.135 | 148 | 86 | 3 | 5 | 150 | 14 | 153 | 1.41e-21 | 95.5 |
| Msa1157500 | AT3G07650.3 | 40.496 | 121 | 67 | 2 | 1 | 116 | 1 | 121 | 1.49e-21 | 95.5 |
| Msa1157500 | AT3G07650.3 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 3.03e-14 | 73.9 |
| Msa1157500 | AT3G07650.2 | 40.496 | 121 | 67 | 2 | 1 | 116 | 1 | 121 | 1.49e-21 | 95.5 |
| Msa1157500 | AT3G07650.2 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 3.03e-14 | 73.9 |
| Msa1157500 | AT3G07650.4 | 40.496 | 121 | 67 | 2 | 1 | 116 | 1 | 121 | 1.49e-21 | 95.5 |
| Msa1157500 | AT3G07650.4 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 3.03e-14 | 73.9 |
| Msa1157500 | AT3G07650.1 | 40.496 | 121 | 67 | 2 | 1 | 116 | 1 | 121 | 1.49e-21 | 95.5 |
| Msa1157500 | AT3G07650.1 | 65.306 | 49 | 17 | 0 | 337 | 385 | 311 | 359 | 3.03e-14 | 73.9 |
| Msa1157500 | AT3G21880.3 | 36.000 | 125 | 72 | 1 | 5 | 129 | 9 | 125 | 6.62e-20 | 90.9 |
| Msa1157500 | AT3G21880.3 | 75.556 | 45 | 11 | 0 | 341 | 385 | 311 | 355 | 2.31e-13 | 71.2 |
| Msa1157500 | AT3G21880.2 | 36.000 | 125 | 72 | 1 | 5 | 129 | 9 | 125 | 6.62e-20 | 90.9 |
| Msa1157500 | AT3G21880.2 | 75.556 | 45 | 11 | 0 | 341 | 385 | 311 | 355 | 2.31e-13 | 71.2 |
| Msa1157500 | AT3G21880.1 | 36.000 | 125 | 72 | 1 | 5 | 129 | 5 | 121 | 7.27e-20 | 90.5 |
| Msa1157500 | AT3G21880.1 | 75.556 | 45 | 11 | 0 | 341 | 385 | 307 | 351 | 2.34e-13 | 71.2 |
| Msa1157500 | AT4G15250.1 | 33.858 | 127 | 76 | 1 | 1 | 127 | 1 | 119 | 2.35e-18 | 85.9 |
| Msa1157500 | AT5G24930.1 | 44.444 | 72 | 40 | 0 | 5 | 76 | 6 | 77 | 2.49e-14 | 74.3 |
| Msa1157500 | AT5G15840.1 | 35.714 | 98 | 57 | 2 | 4 | 101 | 19 | 110 | 9.75e-13 | 69.3 |
| Msa1157500 | AT5G15840.2 | 38.158 | 76 | 47 | 0 | 4 | 79 | 19 | 94 | 3.03e-12 | 67.0 |
| Msa1157500 | AT3G02380.1 | 37.333 | 75 | 47 | 0 | 5 | 79 | 16 | 90 | 1.00e-11 | 66.2 |
| Msa1157500 | AT5G15850.1 | 38.667 | 75 | 46 | 0 | 5 | 79 | 12 | 86 | 1.52e-11 | 65.5 |
| Msa1157500 | AT2G24790.1 | 38.272 | 81 | 47 | 1 | 5 | 85 | 8 | 85 | 4.68e-11 | 63.5 |
| Msa1157500 | AT2G24790.2 | 38.272 | 81 | 47 | 1 | 5 | 85 | 8 | 85 | 7.65e-11 | 62.0 |
Find 96 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACATCTTGCAATGATTT+TGG | 0.117879 | 7_4:+46509314 | None:intergenic |
| TGCGAAGAGGAAGAGGAATT+TGG | 0.187240 | 7_4:-46511093 | Msa1157500:CDS |
| TGTTATGGATTCAATCAATT+TGG | 0.190330 | 7_4:+46508280 | None:intergenic |
| ATGAATCTGGTCTTCTTCTT+TGG | 0.202244 | 7_4:-46510923 | Msa1157500:CDS |
| TTATTGATTTGATTCTTTCT+TGG | 0.276885 | 7_4:-46507666 | Msa1157500:three_prime_UTR |
| AAGAGAAATAGTAATGATTA+TGG | 0.284505 | 7_4:-46510948 | Msa1157500:CDS |
| TGAATCTGGTCTTCTTCTTT+GGG | 0.293542 | 7_4:-46510922 | Msa1157500:CDS |
| CACGAGATCGTTTCTACTTT+GGG | 0.309004 | 7_4:-46511221 | Msa1157500:CDS |
| TGCCATGGGATGAGGTTTCT+TGG | 0.322653 | 7_4:+46507782 | None:intergenic |
| ATTTGAAGGTCCGGTGGTTC+CGG | 0.352451 | 7_4:-46511159 | Msa1157500:CDS |
| CTCAAAAGATGTTCCATAAC+TGG | 0.354580 | 7_4:+46508236 | None:intergenic |
| TTCAAATTCCGCTACGAAAA+CGG | 0.368362 | 7_4:+46511175 | None:intergenic |
| CTTCTATACGGCGGCGGTTG+TGG | 0.371891 | 7_4:+46511267 | None:intergenic |
| TATATCAGAGAAATATTAAC+AGG | 0.383723 | 7_4:-46507724 | Msa1157500:three_prime_UTR |
| GCAAAATTTGCAGAATCAAT+CGG | 0.389145 | 7_4:-46508378 | Msa1157500:intron |
| GTGCTCTTCCAAGCCAATCT+TGG | 0.393330 | 7_4:+46508184 | None:intergenic |
| CGCCGACAGTGTACCAGTTA+TGG | 0.397943 | 7_4:-46508249 | Msa1157500:CDS |
| AAACAGAGTTTCGCGGAGTC+TGG | 0.399009 | 7_4:+46511482 | None:intergenic |
| AATGATTATGGAAATGAATC+TGG | 0.399310 | 7_4:-46510936 | Msa1157500:CDS |
| AATATGAATTGCTCAACATT+TGG | 0.400714 | 7_4:-46509290 | Msa1157500:CDS |
| AGCAACATAAATGCCAAGAT+TGG | 0.407616 | 7_4:-46508197 | Msa1157500:CDS |
| AGTGAGAGGGCGATTTGTTA+AGG | 0.417847 | 7_4:-46507838 | Msa1157500:CDS |
| TACGGCGGCGGTTGTGGTGG+TGG | 0.418409 | 7_4:+46511273 | None:intergenic |
| TGGTTCCGGTTGTGAAGAAT+AGG | 0.424178 | 7_4:-46511145 | Msa1157500:CDS |
| TCACGAGATCGTTTCTACTT+TGG | 0.428133 | 7_4:-46511222 | Msa1157500:CDS |
| CTCGTGAACGGAAGGACAAC+CGG | 0.438426 | 7_4:+46511238 | None:intergenic |
| CACAACCGCCGCCGTATAGA+AGG | 0.439408 | 7_4:-46511266 | Msa1157500:CDS |
| GCTACGAAAACGGAGTCATT+CGG | 0.440696 | 7_4:+46511185 | None:intergenic |
| TAGGGATGAGGTGTATGAAC+AGG | 0.447620 | 7_4:-46511126 | Msa1157500:CDS |
| GTCGGCGCCACTGTATGTTA+TGG | 0.448248 | 7_4:+46508265 | None:intergenic |
| TTCAATGTCACCGCTGCGAT+TGG | 0.452188 | 7_4:-46511340 | Msa1157500:CDS |
| CGTAGCGGAATTTGAAGGTC+CGG | 0.462252 | 7_4:-46511168 | Msa1157500:CDS |
| TGGAAGTTGCGAAGAGGAAG+AGG | 0.466657 | 7_4:-46511100 | Msa1157500:CDS |
| AACCGGTGAGACCTTCTATA+CGG | 0.471948 | 7_4:+46511255 | None:intergenic |
| TACTTTGGTTGTAAGAAAGA+AGG | 0.473670 | 7_4:+46511572 | None:intergenic |
| CTTGAGTGCGAGTGCGTTTG+CGG | 0.474133 | 7_4:+46511436 | None:intergenic |
| TCATCCCTATTCTTCACAAC+CGG | 0.475665 | 7_4:+46511140 | None:intergenic |
| GAAGAGCACACAAGGAATAG+AGG | 0.476262 | 7_4:-46508170 | Msa1157500:CDS |
| ACCTGGGGAGGCTGATACGT+GGG | 0.477722 | 7_4:+46510891 | None:intergenic |
| CGCAGCGGTGACATTGAACT+AGG | 0.479363 | 7_4:+46511345 | None:intergenic |
| CTTCTCCTTGTACCGTAACA+TGG | 0.495549 | 7_4:+46508142 | None:intergenic |
| GGATGCCATGTTACGGTACA+AGG | 0.500503 | 7_4:-46508147 | Msa1157500:CDS |
| AAATTAAGCAAAGAAGTAAA+CGG | 0.500811 | 7_4:+46510996 | None:intergenic |
| TTCTTCACAACCGGAACCAC+CGG | 0.501470 | 7_4:+46511149 | None:intergenic |
| AAGGGAAATGCCATGGGATG+AGG | 0.502225 | 7_4:+46507774 | None:intergenic |
| TGAGGTGTATGAACAGGTGG+TGG | 0.504109 | 7_4:-46511120 | Msa1157500:CDS |
| AGCAACAAGAAAACTAGAGA+TGG | 0.509293 | 7_4:-46508317 | Msa1157500:CDS |
| TCAAGAGATATGACATATGA+TGG | 0.511657 | 7_4:-46509362 | Msa1157500:CDS |
| AGCACATTCGCTATGAATCA+AGG | 0.520514 | 7_4:-46507887 | Msa1157500:CDS |
| GAAGAGGAAGAGGAATTTGG+AGG | 0.524479 | 7_4:-46511090 | Msa1157500:CDS |
| TTTCTACTTTCTTCTTCACA+TGG | 0.524678 | 7_4:+46508339 | None:intergenic |
| GGTTCCGGTTGTGAAGAATA+GGG | 0.535707 | 7_4:-46511144 | Msa1157500:CDS |
| CATAAATGCCAAGATTGGCT+TGG | 0.540383 | 7_4:-46508192 | Msa1157500:CDS |
| CTATACGGCGGCGGTTGTGG+TGG | 0.541136 | 7_4:+46511270 | None:intergenic |
| GCTATGAATCAAGGAAGGCT+AGG | 0.543852 | 7_4:-46507878 | Msa1157500:CDS |
| TTTATAGTCAGTTGATAATG+TGG | 0.544615 | 7_4:+46507604 | None:intergenic |
| CACATACAAGGGAAATGCCA+TGG | 0.545322 | 7_4:+46507767 | None:intergenic |
| ATGGGATGAGGTTTCTTGGA+AGG | 0.548582 | 7_4:+46507786 | None:intergenic |
| ATAGAGGGGATGCCATGTTA+CGG | 0.554868 | 7_4:-46508154 | Msa1157500:CDS |
| GAAACGATCTCGTGAACGGA+AGG | 0.565871 | 7_4:+46511230 | None:intergenic |
| GATACGAGAAAGAGAGTGAG+AGG | 0.573604 | 7_4:-46507852 | Msa1157500:CDS |
| CTATGAATCAAGGAAGGCTA+GGG | 0.574333 | 7_4:-46507877 | Msa1157500:CDS |
| AAGAGCACACAAGGAATAGA+GGG | 0.577298 | 7_4:-46508169 | Msa1157500:CDS |
| GCAACAAGAAAACTAGAGAT+GGG | 0.580033 | 7_4:-46508316 | Msa1157500:CDS |
| GCAACTGATGATATTCAAGA+AGG | 0.580530 | 7_4:-46507816 | Msa1157500:CDS |
| ATTATATGTATACACATACA+AGG | 0.581845 | 7_4:+46507755 | None:intergenic |
| AGTAGAAACGATCTCGTGAA+CGG | 0.584234 | 7_4:+46511226 | None:intergenic |
| CGTTTGCGGAGTGCACGTGC+TGG | 0.587965 | 7_4:+46511450 | None:intergenic |
| TTCCAAGAAACCTCATCCCA+TGG | 0.592114 | 7_4:-46507784 | Msa1157500:three_prime_UTR |
| TTGGCTTGGAAGAGCACACA+AGG | 0.593037 | 7_4:-46508178 | Msa1157500:CDS |
| GGATGAGGTGTATGAACAGG+TGG | 0.594648 | 7_4:-46511123 | Msa1157500:CDS |
| TTCCATAACTGGTACACTGT+CGG | 0.600741 | 7_4:+46508247 | None:intergenic |
| GGTTGTGAAGAATAGGGATG+AGG | 0.611431 | 7_4:-46511138 | Msa1157500:CDS |
| ACAAATTAACAAACCTGGGG+AGG | 0.611687 | 7_4:+46510879 | None:intergenic |
| TCCCACGTATCAGCCTCCCC+AGG | 0.613709 | 7_4:-46510892 | Msa1157500:intron |
| AGCGGAATTTGAAGGTCCGG+TGG | 0.616808 | 7_4:-46511165 | Msa1157500:CDS |
| CGCCGTATAGAAGGTCTCAC+CGG | 0.625403 | 7_4:-46511257 | Msa1157500:CDS |
| CTTGTGTCGCAATAGTCACA+CGG | 0.626589 | 7_4:+46511527 | None:intergenic |
| TGAGACCTTCTATACGGCGG+CGG | 0.629918 | 7_4:+46511261 | None:intergenic |
| CGCTGCGATTGGAACTCTCA+CGG | 0.637906 | 7_4:-46511329 | Msa1157500:CDS |
| ACATACAAGGGAAATGCCAT+GGG | 0.639407 | 7_4:+46507768 | None:intergenic |
| ATTGAATCCATAACATACAG+TGG | 0.640281 | 7_4:-46508272 | Msa1157500:CDS |
| GCAAACTAAACAGAGTTTCG+CGG | 0.640738 | 7_4:+46511475 | None:intergenic |
| AACCTGGGGAGGCTGATACG+TGG | 0.646766 | 7_4:+46510890 | None:intergenic |
| CATTCGCTATGAATCAAGGA+AGG | 0.651760 | 7_4:-46507883 | Msa1157500:CDS |
| AGATATGACATATGATGGTG+TGG | 0.652581 | 7_4:-46509357 | Msa1157500:CDS |
| GGTGAAGCAACGAACTGAAG+CGG | 0.659811 | 7_4:+46511373 | None:intergenic |
| ATACGAGAAAGAGAGTGAGA+GGG | 0.660678 | 7_4:-46507851 | Msa1157500:CDS |
| AGGTGGTGGAAGTTGCGAAG+AGG | 0.669173 | 7_4:-46511106 | Msa1157500:CDS |
| TTATATGTATACACATACAA+GGG | 0.669811 | 7_4:+46507756 | None:intergenic |
| AGGAGAAGAAGAAAACTCGA+AGG | 0.686541 | 7_4:-46508127 | Msa1157500:intron |
| AGAGCACACAAGGAATAGAG+GGG | 0.718530 | 7_4:-46508168 | Msa1157500:CDS |
| CGGTGAGACCTTCTATACGG+CGG | 0.729242 | 7_4:+46511258 | None:intergenic |
| CGTGAGAGTTCCAATCGCAG+CGG | 0.733388 | 7_4:+46511330 | None:intergenic |
| CTATTGCGACACAAGAAACG+CGG | 0.741192 | 7_4:-46511519 | Msa1157500:CDS |
| TGCGATTGGAACTCTCACGG+CGG | 0.780073 | 7_4:-46511326 | Msa1157500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAACATTTTTTTTGA+GGG | + | chr7_4:46508442-46508461 | None:intergenic | 10.0% |
| !!! | AAAAAAAAACATTTTTTTTG+AGG | + | chr7_4:46508443-46508462 | None:intergenic | 10.0% |
| !!! | TTAAGATTGTTAATTTTAAT+TGG | - | chr7_4:46509373-46509392 | Msa1157500:CDS | 10.0% |
| !!! | TATTTTTTATTTTTTGTAGT+TGG | + | chr7_4:46511177-46511196 | None:intergenic | 10.0% |
| !!! | TTAAGTTGATTAATCTAAAA+AGG | + | chr7_4:46508374-46508393 | None:intergenic | 15.0% |
| !!! | ATAATAGTAGTTTTTTTTAG+AGG | - | chr7_4:46508466-46508485 | Msa1157500:intron | 15.0% |
| !!! | TGTTAATTTTAATTGGTTAA+AGG | - | chr7_4:46509380-46509399 | Msa1157500:CDS | 15.0% |
| !!! | GTTAATTTTAATTGGTTAAA+GGG | - | chr7_4:46509381-46509400 | Msa1157500:CDS | 15.0% |
| !!! | ACTTTTTCTACATTATAAAT+TGG | + | chr7_4:46509976-46509995 | None:intergenic | 15.0% |
| !!! | GAAAAAATAATCTCAAATTT+TGG | - | chr7_4:46510022-46510041 | Msa1157500:intron | 15.0% |
| !!! | CATTAATTCAACTTTTAATA+TGG | - | chr7_4:46510081-46510100 | Msa1157500:intron | 15.0% |
| !!! | TGTATTATTATTTTCAACTT+GGG | + | chr7_4:46511216-46511235 | None:intergenic | 15.0% |
| !! | AAATTAAGCAAAGAAGTAAA+CGG | + | chr7_4:46508186-46508205 | None:intergenic | 20.0% |
| !! | AAGAGAAATAGTAATGATTA+TGG | - | chr7_4:46508231-46508250 | Msa1157500:CDS | 20.0% |
| !!! | AAATATTTTACACATTCACA+AGG | - | chr7_4:46508924-46508943 | Msa1157500:intron | 20.0% |
| !!! | ATTACATTTTTAATGACTGA+TGG | - | chr7_4:46509077-46509096 | Msa1157500:intron | 20.0% |
| !! | ATAATGAATTTGAGTAAACT+AGG | - | chr7_4:46509104-46509123 | Msa1157500:intron | 20.0% |
| !!! | TAATAGGCTTTTAATTTTAC+TGG | - | chr7_4:46509239-46509258 | Msa1157500:intron | 20.0% |
| !!! | TGAATTTTTCTCATTAGTTT+CGG | - | chr7_4:46509264-46509283 | Msa1157500:intron | 20.0% |
| !! | AAAAATTCAATGACCTTAAA+TGG | + | chr7_4:46509685-46509704 | None:intergenic | 20.0% |
| !! | TGCATTAATTGAGTTTATTA+CGG | - | chr7_4:46509710-46509729 | Msa1157500:intron | 20.0% |
| !! | AAACTAAAATCTACAAAGAA+TGG | + | chr7_4:46509942-46509961 | None:intergenic | 20.0% |
| !! | TTAAGGAAATGTGATTTAAA+TGG | - | chr7_4:46510246-46510265 | Msa1157500:intron | 20.0% |
| !! | TCTATTAATATACTAGTATG+AGG | - | chr7_4:46510363-46510382 | Msa1157500:intron | 20.0% |
| !! | TATGACAATGTAGTAAATAA+AGG | + | chr7_4:46510721-46510740 | None:intergenic | 20.0% |
| !! | TTATCCAAAATTGAATGATT+GGG | - | chr7_4:46511147-46511166 | Msa1157500:CDS | 20.0% |
| !!! | GTATTATTATTTTCAACTTG+GGG | + | chr7_4:46511215-46511234 | None:intergenic | 20.0% |
| !!! | GTGTATTATTATTTTCAACT+TGG | + | chr7_4:46511217-46511236 | None:intergenic | 20.0% |
| !! | GTTGAAAATAATAATACACT+TGG | - | chr7_4:46511218-46511237 | Msa1157500:CDS | 20.0% |
| !! | TTATATGTATACACATACAA+GGG | + | chr7_4:46511426-46511445 | None:intergenic | 20.0% |
| !! | ATTATATGTATACACATACA+AGG | + | chr7_4:46511427-46511446 | None:intergenic | 20.0% |
| !! | TATATCAGAGAAATATTAAC+AGG | - | chr7_4:46511455-46511474 | Msa1157500:CDS | 20.0% |
| !!! | TTATTGATTTGATTCTTTCT+TGG | - | chr7_4:46511513-46511532 | Msa1157500:CDS | 20.0% |
| !!! | ATCGTTTTAAGAGAATACTT+TGG | + | chr7_4:46507625-46507644 | None:intergenic | 25.0% |
| ! | AATGATTATGGAAATGAATC+TGG | - | chr7_4:46508243-46508262 | Msa1157500:CDS | 25.0% |
| ! | AAACACAAATTAACAAACCT+GGG | + | chr7_4:46508307-46508326 | None:intergenic | 25.0% |
| ! | AAAACACAAATTAACAAACC+TGG | + | chr7_4:46508308-46508327 | None:intergenic | 25.0% |
| ! | TAAACTTTAACCACAATGAA+AGG | + | chr7_4:46508647-46508666 | None:intergenic | 25.0% |
| ! | GAATGTGTAAAATATTTGAC+TGG | + | chr7_4:46508921-46508940 | None:intergenic | 25.0% |
| ! | TATTCATATTTATTGTCCCA+CGG | - | chr7_4:46509002-46509021 | Msa1157500:intron | 25.0% |
| !! | GAACTTTTACTCTTGTTAAT+AGG | - | chr7_4:46509223-46509242 | Msa1157500:intron | 25.0% |
| !! | TATTTCAAAAGAAGGTACAA+GGG | + | chr7_4:46509638-46509657 | None:intergenic | 25.0% |
| !! | ATATTTCAAAAGAAGGTACA+AGG | + | chr7_4:46509639-46509658 | None:intergenic | 25.0% |
| ! | GGCAAAAATATTTCAAAAGA+AGG | + | chr7_4:46509646-46509665 | None:intergenic | 25.0% |
| ! | AATATGAATTGCTCAACATT+TGG | - | chr7_4:46509889-46509908 | Msa1157500:intron | 25.0% |
| !! | AACACACTTAACAATTTTTC+TGG | - | chr7_4:46510058-46510077 | Msa1157500:intron | 25.0% |
| !! | TCAACTTTTAATATGGTACA+AGG | - | chr7_4:46510088-46510107 | Msa1157500:intron | 25.0% |
| ! | ATTGAATTGCAAACTGTTTA+AGG | - | chr7_4:46510229-46510248 | Msa1157500:intron | 25.0% |
| !!! | GCAACTTTCTTTTTCAAAAT+TGG | + | chr7_4:46510442-46510461 | None:intergenic | 25.0% |
| !!! | ACAGTTTTTTCTGTATGTAT+AGG | + | chr7_4:46510492-46510511 | None:intergenic | 25.0% |
| ! | TATACATACAGAAAAAACTG+TGG | - | chr7_4:46510491-46510510 | Msa1157500:intron | 25.0% |
| ! | ATACATACAGAAAAAACTGT+GGG | - | chr7_4:46510492-46510511 | Msa1157500:intron | 25.0% |
| ! | TAAATAAAGGCCAAATCATA+TGG | + | chr7_4:46510708-46510727 | None:intergenic | 25.0% |
| !! | ATTTTGCAAAGACAAACAAT+TGG | + | chr7_4:46510788-46510807 | None:intergenic | 25.0% |
| ! | TGTTATGGATTCAATCAATT+TGG | + | chr7_4:46510902-46510921 | None:intergenic | 25.0% |
| ! | TTCATTTGTATTTGCTTATG+AGG | + | chr7_4:46511102-46511121 | None:intergenic | 25.0% |
| !! | TTTTGGATAAGTAATCGTAT+AGG | + | chr7_4:46511137-46511156 | None:intergenic | 25.0% |
| ! | CTTATCCAAAATTGAATGAT+TGG | - | chr7_4:46511146-46511165 | Msa1157500:CDS | 25.0% |
| ! | TATCCAAAATTGAATGATTG+GGG | - | chr7_4:46511148-46511167 | Msa1157500:CDS | 25.0% |
| !!! | TTTATAGTCAGTTGATAATG+TGG | + | chr7_4:46511578-46511597 | None:intergenic | 25.0% |
| TACTTTGGTTGTAAGAAAGA+AGG | + | chr7_4:46507610-46507629 | None:intergenic | 30.0% | |
| !! | TTTTGCAGTTTTGGCAAATT+TGG | + | chr7_4:46507780-46507799 | None:intergenic | 30.0% |
| ! | TTTTCGTCTGAATTTGATGT+TGG | - | chr7_4:46508204-46508223 | Msa1157500:CDS | 30.0% |
| AACACAAATTAACAAACCTG+GGG | + | chr7_4:46508306-46508325 | None:intergenic | 30.0% | |
| AGGAAGATAAGTAGTTGAAA+AGG | - | chr7_4:46508486-46508505 | Msa1157500:intron | 30.0% | |
| GGAAGATAAGTAGTTGAAAA+GGG | - | chr7_4:46508487-46508506 | Msa1157500:intron | 30.0% | |
| !!! | AAGTTTTGTTCCTTTCATTG+TGG | - | chr7_4:46508634-46508653 | Msa1157500:intron | 30.0% |
| AATTGGCAAAAATGCCAAAA+TGG | - | chr7_4:46508694-46508713 | Msa1157500:intron | 30.0% | |
| ! | ATTTTACACATTCACAAGGT+CGG | - | chr7_4:46508928-46508947 | Msa1157500:intron | 30.0% |
| !! | GTAGCATTGACATGAAAATT+TGG | - | chr7_4:46509155-46509174 | Msa1157500:intron | 30.0% |
| ATGCAAGATAACAACACATT+AGG | + | chr7_4:46509479-46509498 | None:intergenic | 30.0% | |
| TAAAATCTCAGTTGAGATCT+TGG | - | chr7_4:46509589-46509608 | Msa1157500:intron | 30.0% | |
| TCAAGAGATATGACATATGA+TGG | - | chr7_4:46509817-46509836 | Msa1157500:intron | 30.0% | |
| !!! | CAATGATTTTGGAATCGATA+AGG | + | chr7_4:46509857-46509876 | None:intergenic | 30.0% |
| ! | TACACATCTTGCAATGATTT+TGG | + | chr7_4:46509868-46509887 | None:intergenic | 30.0% |
| ATCTCTGAGCTTAATGTATT+AGG | - | chr7_4:46510138-46510157 | Msa1157500:intron | 30.0% | |
| ! | TTAATTCCTTGGTAGACTTT+TGG | + | chr7_4:46510169-46510188 | None:intergenic | 30.0% |
| ATGTGATTTAAATGGTTGAG+TGG | - | chr7_4:46510254-46510273 | Msa1157500:intron | 30.0% | |
| GATTCAAGCTCTTTAATGTA+AGG | - | chr7_4:46510312-46510331 | Msa1157500:intron | 30.0% | |
| CTTTAATGTAAGGACTTTGA+TGG | - | chr7_4:46510322-46510341 | Msa1157500:intron | 30.0% | |
| !! | TTTTGAAAAAGAAAGTTGCG+TGG | - | chr7_4:46510443-46510462 | Msa1157500:intron | 30.0% |
| TTTGAAAAAGAAAGTTGCGT+GGG | - | chr7_4:46510444-46510463 | Msa1157500:intron | 30.0% | |
| ACATTGAATCAAAGCAATGT+AGG | + | chr7_4:46510518-46510537 | None:intergenic | 30.0% | |
| !! | GAAGATTTGCTATGAATCTT+GGG | + | chr7_4:46510594-46510613 | None:intergenic | 30.0% |
| !! | TGTAGCTTTAATGTTGAACT+AGG | + | chr7_4:46510631-46510650 | None:intergenic | 30.0% |
| AGCACTATTTCCATATGATT+TGG | - | chr7_4:46510695-46510714 | Msa1157500:intron | 30.0% | |
| TCATGCTTGGTTTATCTATA+GGG | - | chr7_4:46510749-46510768 | Msa1157500:intron | 30.0% | |
| GCAAAATTTGCAGAATCAAT+CGG | - | chr7_4:46510801-46510820 | Msa1157500:intron | 30.0% | |
| TTTCTACTTTCTTCTTCACA+TGG | + | chr7_4:46510843-46510862 | None:intergenic | 30.0% | |
| ATTGAATCCATAACATACAG+TGG | - | chr7_4:46510907-46510926 | Msa1157500:CDS | 30.0% | |
| ATCCAAAATTGAATGATTGG+GGG | - | chr7_4:46511149-46511168 | Msa1157500:CDS | 30.0% | |
| !!! | ATGCTTATGTGCTTATTTTG+TGG | - | chr7_4:46511244-46511263 | Msa1157500:CDS | 30.0% |
| !!! | AACAGGTTCTAGTTTTAATG+AGG | - | chr7_4:46511472-46511491 | Msa1157500:CDS | 30.0% |
| ! | TTTTAATGAGGAATTCTGTC+AGG | - | chr7_4:46511484-46511503 | Msa1157500:CDS | 30.0% |
| ! | GTGACATTGAACTAGGTTTT+CGG | + | chr7_4:46507830-46507849 | None:intergenic | 35.0% |
| TTCAAATTCCGCTACGAAAA+CGG | + | chr7_4:46508007-46508026 | None:intergenic | 35.0% | |
| ! | ATGAATCTGGTCTTCTTCTT+TGG | - | chr7_4:46508256-46508275 | Msa1157500:CDS | 35.0% |
| ! | TGAATCTGGTCTTCTTCTTT+GGG | - | chr7_4:46508257-46508276 | Msa1157500:CDS | 35.0% |
| AATGTAACTAAACCGACGTT+TGG | + | chr7_4:46508806-46508825 | None:intergenic | 35.0% | |
| TCGGTTTAGTTACATTACCA+AGG | - | chr7_4:46508810-46508829 | Msa1157500:intron | 35.0% | |
| TTCGATGGAGTTAGATATAG+AGG | - | chr7_4:46508833-46508852 | Msa1157500:intron | 35.0% | |
| ATGGAGTTAGATATAGAGGA+TGG | - | chr7_4:46508837-46508856 | Msa1157500:intron | 35.0% | |
| TGGAGTTAGATATAGAGGAT+GGG | - | chr7_4:46508838-46508857 | Msa1157500:intron | 35.0% | |
| AAATATTTGACTGGCAATCC+AGG | + | chr7_4:46508912-46508931 | None:intergenic | 35.0% | |
| ACCAGAGGTAATAACATTCA+AGG | + | chr7_4:46509030-46509049 | None:intergenic | 35.0% | |
| TTGAATGTTATTACCTCTGG+TGG | - | chr7_4:46509029-46509048 | Msa1157500:intron | 35.0% | |
| ! | TCTCATTAGTTTCGGTTACT+AGG | - | chr7_4:46509272-46509291 | Msa1157500:CDS | 35.0% |
| GAAACTAGCAAAGAATGGTA+AGG | + | chr7_4:46509310-46509329 | None:intergenic | 35.0% | |
| AATTGGTTAAAGGGTGATGT+AGG | - | chr7_4:46509390-46509409 | Msa1157500:intron | 35.0% | |
| ATTGGTTAAAGGGTGATGTA+GGG | - | chr7_4:46509391-46509410 | Msa1157500:intron | 35.0% | |
| CTCCTACTTGACAATGAAAT+TGG | - | chr7_4:46509442-46509461 | Msa1157500:intron | 35.0% | |
| GACCAATTTCATTGTCAAGT+AGG | + | chr7_4:46509447-46509466 | None:intergenic | 35.0% | |
| ACAGAAAGCTGCAAATAAGA+TGG | + | chr7_4:46509516-46509535 | None:intergenic | 35.0% | |
| ! | TTTTTGCCTGTCCTTAAGTT+AGG | - | chr7_4:46509658-46509677 | Msa1157500:intron | 35.0% |
| ! | TTTTGCCTGTCCTTAAGTTA+GGG | - | chr7_4:46509659-46509678 | Msa1157500:intron | 35.0% |
| ! | AGATATGACATATGATGGTG+TGG | - | chr7_4:46509822-46509841 | Msa1157500:intron | 35.0% |
| GTAGGGTAGTATTAATTCCT+TGG | + | chr7_4:46510180-46510199 | None:intergenic | 35.0% | |
| ACAGCAATTGACAAGTAGTA+GGG | + | chr7_4:46510197-46510216 | None:intergenic | 35.0% | |
| TACAGCAATTGACAAGTAGT+AGG | + | chr7_4:46510198-46510217 | None:intergenic | 35.0% | |
| TGGGTTTAATAGCTTGGAAA+AGG | - | chr7_4:46510463-46510482 | Msa1157500:intron | 35.0% | |
| TTCAATGTACAGAGTTCACA+TGG | - | chr7_4:46510530-46510549 | Msa1157500:intron | 35.0% | |
| TCAATGTACAGAGTTCACAT+GGG | - | chr7_4:46510531-46510550 | Msa1157500:intron | 35.0% | |
| !! | GGAAGATTTGCTATGAATCT+TGG | + | chr7_4:46510595-46510614 | None:intergenic | 35.0% |
| GAACTAGGTACAACTAAAGT+TGG | + | chr7_4:46510616-46510635 | None:intergenic | 35.0% | |
| TCATATATTGCTGTCATGCT+TGG | - | chr7_4:46510736-46510755 | Msa1157500:intron | 35.0% | |
| GTCATGCTTGGTTTATCTAT+AGG | - | chr7_4:46510748-46510767 | Msa1157500:intron | 35.0% | |
| ACAAACAATTGGTCAAGCAT+TGG | + | chr7_4:46510777-46510796 | None:intergenic | 35.0% | |
| AGCAACAAGAAAACTAGAGA+TGG | - | chr7_4:46510862-46510881 | Msa1157500:intron | 35.0% | |
| GCAACAAGAAAACTAGAGAT+GGG | - | chr7_4:46510863-46510882 | Msa1157500:intron | 35.0% | |
| CTCAAAAGATGTTCCATAAC+TGG | + | chr7_4:46510946-46510965 | None:intergenic | 35.0% | |
| ! | GTTATGGAACATCTTTTGAG+TGG | - | chr7_4:46510946-46510965 | Msa1157500:CDS | 35.0% |
| AGCAACATAAATGCCAAGAT+TGG | - | chr7_4:46510982-46511001 | Msa1157500:CDS | 35.0% | |
| TCCAAAATTGAATGATTGGG+GGG | - | chr7_4:46511150-46511169 | Msa1157500:CDS | 35.0% | |
| GCAACTGATGATATTCAAGA+AGG | - | chr7_4:46511363-46511382 | Msa1157500:CDS | 35.0% | |
| GCAAACTAAACAGAGTTTCG+CGG | + | chr7_4:46507707-46507726 | None:intergenic | 40.0% | |
| TGGTGGAAAAATGAAGAGGT+GGG | + | chr7_4:46507892-46507911 | None:intergenic | 40.0% | |
| AGTAGAAACGATCTCGTGAA+CGG | + | chr7_4:46507956-46507975 | None:intergenic | 40.0% | |
| TCACGAGATCGTTTCTACTT+TGG | - | chr7_4:46507957-46507976 | Msa1157500:intron | 40.0% | |
| CACGAGATCGTTTCTACTTT+GGG | - | chr7_4:46507958-46507977 | Msa1157500:intron | 40.0% | |
| !! | GTTTTCGTAGCGGAATTTGA+AGG | - | chr7_4:46508006-46508025 | Msa1157500:intron | 40.0% |
| TCATCCCTATTCTTCACAAC+CGG | + | chr7_4:46508042-46508061 | None:intergenic | 40.0% | |
| ACAAATTAACAAACCTGGGG+AGG | + | chr7_4:46508303-46508322 | None:intergenic | 40.0% | |
| ! | GCATTTTTGCCAATTGAGCT+AGG | + | chr7_4:46508689-46508708 | None:intergenic | 40.0% |
| GCAAAAATGCCAAAATGGCT+AGG | - | chr7_4:46508699-46508718 | Msa1157500:intron | 40.0% | |
| !!! | TTCGTCGATTTTCCAAACGT+CGG | - | chr7_4:46508791-46508810 | Msa1157500:intron | 40.0% |
| GTTACATTACCAAGGTTCGA+TGG | - | chr7_4:46508818-46508837 | Msa1157500:intron | 40.0% | |
| TATCTAACTCCATCGAACCT+TGG | + | chr7_4:46508830-46508849 | None:intergenic | 40.0% | |
| GGAGTTAGATATAGAGGATG+GGG | - | chr7_4:46508839-46508858 | Msa1157500:intron | 40.0% | |
| ACAAAGGTTCAATCCTTGTC+AGG | - | chr7_4:46508878-46508897 | Msa1157500:intron | 40.0% | |
| !! | AATAACATTCAAGGCACCGT+GGG | + | chr7_4:46509021-46509040 | None:intergenic | 40.0% |
| !! | TAATAACATTCAAGGCACCG+TGG | + | chr7_4:46509022-46509041 | None:intergenic | 40.0% |
| GCCTTGAATGTTATTACCTC+TGG | - | chr7_4:46509026-46509045 | Msa1157500:intron | 40.0% | |
| AATGTTATTACCTCTGGTGG+AGG | - | chr7_4:46509032-46509051 | Msa1157500:intron | 40.0% | |
| ATGTTATTACCTCTGGTGGA+GGG | - | chr7_4:46509033-46509052 | Msa1157500:intron | 40.0% | |
| AGTAAACTAGGCTGCATTGT+TGG | - | chr7_4:46509116-46509135 | Msa1157500:intron | 40.0% | |
| ! | TGTTGGTTACTAGGTGAATG+AGG | - | chr7_4:46509133-46509152 | Msa1157500:intron | 40.0% |
| ACTAGCAAAGAATGGTAAGG+AGG | + | chr7_4:46509307-46509326 | None:intergenic | 40.0% | |
| GAAGGGAAACTAGCAAAGAA+TGG | + | chr7_4:46509315-46509334 | None:intergenic | 40.0% | |
| AAGTACCAGATAGAGAGGAA+GGG | + | chr7_4:46509332-46509351 | None:intergenic | 40.0% | |
| TGAAGCAAACCAACATATGC+AGG | - | chr7_4:46509547-46509566 | Msa1157500:intron | 40.0% | |
| AATGCTCTTCCTGCATATGT+TGG | + | chr7_4:46509559-46509578 | None:intergenic | 40.0% | |
| CCTTAAATGGCCCTAACTTA+AGG | + | chr7_4:46509672-46509691 | None:intergenic | 40.0% | |
| CCTTAAGTTAGGGCCATTTA+AGG | - | chr7_4:46509669-46509688 | Msa1157500:intron | 40.0% | |
| TAGTCTTTGTACGTTTGTGC+AGG | - | chr7_4:46509771-46509790 | Msa1157500:intron | 40.0% | |
| GAATCACCAAAAGTCTACCA+AGG | - | chr7_4:46510160-46510179 | Msa1157500:intron | 40.0% | |
| CAATGTACAGAGTTCACATG+GGG | - | chr7_4:46510532-46510551 | Msa1157500:intron | 40.0% | |
| TTCCATAACTGGTACACTGT+CGG | + | chr7_4:46510935-46510954 | None:intergenic | 40.0% | |
| ! | CATAAATGCCAAGATTGGCT+TGG | - | chr7_4:46510987-46511006 | Msa1157500:CDS | 40.0% |
| ! | AAGAGCACACAAGGAATAGA+GGG | - | chr7_4:46511010-46511029 | Msa1157500:CDS | 40.0% |
| AGGAGAAGAAGAAAACTCGA+AGG | - | chr7_4:46511052-46511071 | Msa1157500:CDS | 40.0% | |
| CCAAAATTGAATGATTGGGG+GGG | - | chr7_4:46511151-46511170 | Msa1157500:CDS | 40.0% | |
| AGCACATTCGCTATGAATCA+AGG | - | chr7_4:46511292-46511311 | Msa1157500:CDS | 40.0% | |
| CATTCGCTATGAATCAAGGA+AGG | - | chr7_4:46511296-46511315 | Msa1157500:CDS | 40.0% | |
| CTATGAATCAAGGAAGGCTA+GGG | - | chr7_4:46511302-46511321 | Msa1157500:CDS | 40.0% | |
| ATACGAGAAAGAGAGTGAGA+GGG | - | chr7_4:46511328-46511347 | Msa1157500:CDS | 40.0% | |
| ACATACAAGGGAAATGCCAT+GGG | + | chr7_4:46511414-46511433 | None:intergenic | 40.0% | |
| CTTGTGTCGCAATAGTCACA+CGG | + | chr7_4:46507655-46507674 | None:intergenic | 45.0% | |
| CTATTGCGACACAAGAAACG+CGG | - | chr7_4:46507660-46507679 | Msa1157500:three_prime_UTR | 45.0% | |
| GGTGGAAAAATGAAGAGGTG+GGG | + | chr7_4:46507891-46507910 | None:intergenic | 45.0% | |
| ! | GTGGTGGAAAAATGAAGAGG+TGG | + | chr7_4:46507893-46507912 | None:intergenic | 45.0% |
| !! | GTGGTGGTGGAAAAATGAAG+AGG | + | chr7_4:46507896-46507915 | None:intergenic | 45.0% |
| AACCGGTGAGACCTTCTATA+CGG | + | chr7_4:46507927-46507946 | None:intergenic | 45.0% | |
| GCTACGAAAACGGAGTCATT+CGG | + | chr7_4:46507997-46508016 | None:intergenic | 45.0% | |
| ! | GAATGACTCCGTTTTCGTAG+CGG | - | chr7_4:46507996-46508015 | Msa1157500:intron | 45.0% |
| TGGTTCCGGTTGTGAAGAAT+AGG | - | chr7_4:46508034-46508053 | Msa1157500:intron | 45.0% | |
| GGTTCCGGTTGTGAAGAATA+GGG | - | chr7_4:46508035-46508054 | Msa1157500:intron | 45.0% | |
| GGTTGTGAAGAATAGGGATG+AGG | - | chr7_4:46508041-46508060 | Msa1157500:intron | 45.0% | |
| TAGGGATGAGGTGTATGAAC+AGG | - | chr7_4:46508053-46508072 | Msa1157500:intron | 45.0% | |
| TGCGAAGAGGAAGAGGAATT+TGG | - | chr7_4:46508086-46508105 | Msa1157500:intron | 45.0% | |
| GAAGAGGAAGAGGAATTTGG+AGG | - | chr7_4:46508089-46508108 | Msa1157500:intron | 45.0% | |
| GACGTAAGTCCTAGCTCAAT+TGG | - | chr7_4:46508677-46508696 | Msa1157500:intron | 45.0% | |
| ! | ATCGTCTAGCCTAGCCATTT+TGG | + | chr7_4:46508711-46508730 | None:intergenic | 45.0% |
| TAGGCTAGACGATGTGATGA+GGG | - | chr7_4:46508718-46508737 | Msa1157500:intron | 45.0% | |
| GACGAAATGACCATCACGTT+TGG | + | chr7_4:46508777-46508796 | None:intergenic | 45.0% | |
| TTAGACTGCGTGGCAAACAA+AGG | - | chr7_4:46508862-46508881 | Msa1157500:intron | 45.0% | |
| ! | AGGCTGCATTGTTGGTTACT+AGG | - | chr7_4:46509124-46509143 | Msa1157500:intron | 45.0% |
| ! | AGAATGGTAAGGAGGTGCAA+TGG | + | chr7_4:46509299-46509318 | None:intergenic | 45.0% |
| AGTTTCCCTTCCTCTCTATC+TGG | - | chr7_4:46509324-46509343 | Msa1157500:CDS | 45.0% | |
| CAAGTACCAGATAGAGAGGA+AGG | + | chr7_4:46509333-46509352 | None:intergenic | 45.0% | |
| AACGCAAGTACCAGATAGAG+AGG | + | chr7_4:46509337-46509356 | None:intergenic | 45.0% | |
| AATGGCCCTAACTTAAGGAC+AGG | + | chr7_4:46509667-46509686 | None:intergenic | 45.0% | |
| TTTGTACGTTTGTGCAGGTC+TGG | - | chr7_4:46509776-46509795 | Msa1157500:intron | 45.0% | |
| TTGTACGTTTGTGCAGGTCT+GGG | - | chr7_4:46509777-46509796 | Msa1157500:intron | 45.0% | |
| TGGTTGAGTGGATGATGCAA+AGG | - | chr7_4:46510266-46510285 | Msa1157500:intron | 45.0% | |
| GTTGCGTGGGTTTAATAGCT+TGG | - | chr7_4:46510457-46510476 | Msa1157500:intron | 45.0% | |
| ! | GAAGAGCACACAAGGAATAG+AGG | - | chr7_4:46511009-46511028 | Msa1157500:CDS | 45.0% |
| AGAGCACACAAGGAATAGAG+GGG | - | chr7_4:46511011-46511030 | Msa1157500:CDS | 45.0% | |
| ATAGAGGGGATGCCATGTTA+CGG | - | chr7_4:46511025-46511044 | Msa1157500:CDS | 45.0% | |
| CTTCTCCTTGTACCGTAACA+TGG | + | chr7_4:46511040-46511059 | None:intergenic | 45.0% | |
| ! | CCCCCCCAATCATTCAATTT+TGG | + | chr7_4:46511154-46511173 | None:intergenic | 45.0% |
| TGTGGCATCAAACTTTGCAC+AGG | - | chr7_4:46511262-46511281 | Msa1157500:CDS | 45.0% | |
| GCTATGAATCAAGGAAGGCT+AGG | - | chr7_4:46511301-46511320 | Msa1157500:CDS | 45.0% | |
| GATACGAGAAAGAGAGTGAG+AGG | - | chr7_4:46511327-46511346 | Msa1157500:CDS | 45.0% | |
| !! | AGTGAGAGGGCGATTTGTTA+AGG | - | chr7_4:46511341-46511360 | Msa1157500:CDS | 45.0% |
| ATGGGATGAGGTTTCTTGGA+AGG | + | chr7_4:46511396-46511415 | None:intergenic | 45.0% | |
| TTCCAAGAAACCTCATCCCA+TGG | - | chr7_4:46511395-46511414 | Msa1157500:CDS | 45.0% | |
| CACATACAAGGGAAATGCCA+TGG | + | chr7_4:46511415-46511434 | None:intergenic | 45.0% | |
| AAACAGAGTTTCGCGGAGTC+TGG | + | chr7_4:46507700-46507719 | None:intergenic | 50.0% | |
| !!! | CGGCGTCGTTTTTGCAGTTT+TGG | + | chr7_4:46507789-46507808 | None:intergenic | 50.0% |
| GGTGAAGCAACGAACTGAAG+CGG | + | chr7_4:46507809-46507828 | None:intergenic | 50.0% | |
| TTCAATGTCACCGCTGCGAT+TGG | - | chr7_4:46507839-46507858 | Msa1157500:CDS | 50.0% | |
| GAAACGATCTCGTGAACGGA+AGG | + | chr7_4:46507952-46507971 | None:intergenic | 50.0% | |
| ! | CGTAGCGGAATTTGAAGGTC+CGG | - | chr7_4:46508011-46508030 | Msa1157500:intron | 50.0% |
| ATTTGAAGGTCCGGTGGTTC+CGG | - | chr7_4:46508020-46508039 | Msa1157500:intron | 50.0% | |
| TTCTTCACAACCGGAACCAC+CGG | + | chr7_4:46508033-46508052 | None:intergenic | 50.0% | |
| GGATGAGGTGTATGAACAGG+TGG | - | chr7_4:46508056-46508075 | Msa1157500:intron | 50.0% | |
| TGAGGTGTATGAACAGGTGG+TGG | - | chr7_4:46508059-46508078 | Msa1157500:intron | 50.0% | |
| TGGAAGTTGCGAAGAGGAAG+AGG | - | chr7_4:46508079-46508098 | Msa1157500:intron | 50.0% | |
| CTAGGCTAGACGATGTGATG+AGG | - | chr7_4:46508717-46508736 | Msa1157500:intron | 50.0% | |
| TGGAAACTCGCACACACAAG+TGG | + | chr7_4:46508757-46508776 | None:intergenic | 50.0% | |
| GTGCGAGTTTCCAAACGTGA+TGG | - | chr7_4:46508764-46508783 | Msa1157500:intron | 50.0% | |
| GGTTCAATCCTTGTCAGGAG+AGG | - | chr7_4:46508883-46508902 | Msa1157500:intron | 50.0% | |
| TCACAAGGTCGGCATATCTG+TGG | - | chr7_4:46508939-46508958 | Msa1157500:intron | 50.0% | |
| TGTACAGAGTTCACATGGGG+TGG | - | chr7_4:46510535-46510554 | Msa1157500:intron | 50.0% | |
| GTACAGAGTTCACATGGGGT+GGG | - | chr7_4:46510536-46510555 | Msa1157500:intron | 50.0% | |
| TACAGAGTTCACATGGGGTG+GGG | - | chr7_4:46510537-46510556 | Msa1157500:intron | 50.0% | |
| GTGCTCTTCCAAGCCAATCT+TGG | + | chr7_4:46510998-46511017 | None:intergenic | 50.0% | |
| !! | TTGGCTTGGAAGAGCACACA+AGG | - | chr7_4:46511001-46511020 | Msa1157500:CDS | 50.0% |
| GGATGCCATGTTACGGTACA+AGG | - | chr7_4:46511032-46511051 | Msa1157500:CDS | 50.0% | |
| TGCCATGGGATGAGGTTTCT+TGG | + | chr7_4:46511400-46511419 | None:intergenic | 50.0% | |
| AAGGGAAATGCCATGGGATG+AGG | + | chr7_4:46511408-46511427 | None:intergenic | 50.0% | |
| CTTGAGTGCGAGTGCGTTTG+CGG | + | chr7_4:46507746-46507765 | None:intergenic | 55.0% | |
| CGCAGCGGTGACATTGAACT+AGG | + | chr7_4:46507837-46507856 | None:intergenic | 55.0% | |
| CGTGAGAGTTCCAATCGCAG+CGG | + | chr7_4:46507852-46507871 | None:intergenic | 55.0% | |
| CGCTGCGATTGGAACTCTCA+CGG | - | chr7_4:46507850-46507869 | Msa1157500:CDS | 55.0% | |
| TGCGATTGGAACTCTCACGG+CGG | - | chr7_4:46507853-46507872 | Msa1157500:CDS | 55.0% | |
| TGAGACCTTCTATACGGCGG+CGG | + | chr7_4:46507921-46507940 | None:intergenic | 55.0% | |
| CGGTGAGACCTTCTATACGG+CGG | + | chr7_4:46507924-46507943 | None:intergenic | 55.0% | |
| CGCCGTATAGAAGGTCTCAC+CGG | - | chr7_4:46507922-46507941 | Msa1157500:intron | 55.0% | |
| CTCGTGAACGGAAGGACAAC+CGG | + | chr7_4:46507944-46507963 | None:intergenic | 55.0% | |
| AGCGGAATTTGAAGGTCCGG+TGG | - | chr7_4:46508014-46508033 | Msa1157500:intron | 55.0% | |
| !! | AGGTGGTGGAAGTTGCGAAG+AGG | - | chr7_4:46508073-46508092 | Msa1157500:intron | 55.0% |
| TCGCACACACAAGTGGCAAG+GGG | + | chr7_4:46508750-46508769 | None:intergenic | 55.0% | |
| CTCGCACACACAAGTGGCAA+GGG | + | chr7_4:46508751-46508770 | None:intergenic | 55.0% | |
| ACTCGCACACACAAGTGGCA+AGG | + | chr7_4:46508752-46508771 | None:intergenic | 55.0% | |
| CTAGAGATTCCCTCCACCAG+AGG | + | chr7_4:46509045-46509064 | None:intergenic | 55.0% | |
| CTCTGGTGGAGGGAATCTCT+AGG | - | chr7_4:46509043-46509062 | Msa1157500:intron | 55.0% | |
| TGGGGAGGGACAATAGAGGT+CGG | - | chr7_4:46510555-46510574 | Msa1157500:intron | 55.0% | |
| GTCGGCGCCACTGTATGTTA+TGG | + | chr7_4:46510917-46510936 | None:intergenic | 55.0% | |
| CGCCGACAGTGTACCAGTTA+TGG | - | chr7_4:46510930-46510949 | Msa1157500:CDS | 55.0% | |
| CTTCTATACGGCGGCGGTTG+TGG | + | chr7_4:46507915-46507934 | None:intergenic | 60.0% | |
| CACAACCGCCGCCGTATAGA+AGG | - | chr7_4:46507913-46507932 | Msa1157500:intron | 60.0% | |
| ACCTGGGGAGGCTGATACGT+GGG | + | chr7_4:46508291-46508310 | None:intergenic | 60.0% | |
| AACCTGGGGAGGCTGATACG+TGG | + | chr7_4:46508292-46508311 | None:intergenic | 60.0% | |
| GAGGATGGGGTTAGACTGCG+TGG | - | chr7_4:46508852-46508871 | Msa1157500:intron | 60.0% | |
| CCAGGTCTCCTCTCCTGACA+AGG | + | chr7_4:46508894-46508913 | None:intergenic | 60.0% | |
| CCTTGTCAGGAGAGGAGACC+TGG | - | chr7_4:46508891-46508910 | Msa1157500:intron | 60.0% | |
| AGAGTTCACATGGGGTGGGG+AGG | - | chr7_4:46510540-46510559 | Msa1157500:intron | 60.0% | |
| GAGTTCACATGGGGTGGGGA+GGG | - | chr7_4:46510541-46510560 | Msa1157500:intron | 60.0% | |
| CGTTTGCGGAGTGCACGTGC+TGG | + | chr7_4:46507732-46507751 | None:intergenic | 65.0% | |
| CTATACGGCGGCGGTTGTGG+TGG | + | chr7_4:46507912-46507931 | None:intergenic | 65.0% | |
| TCCCACGTATCAGCCTCCCC+AGG | - | chr7_4:46508287-46508306 | Msa1157500:CDS | 65.0% | |
| GGGGTGGGGAGGGACAATAG+AGG | - | chr7_4:46510551-46510570 | Msa1157500:intron | 65.0% | |
| TACGGCGGCGGTTGTGGTGG+TGG | + | chr7_4:46507909-46507928 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 46507600 | 46511601 | 46507600 | ID=Msa1157500;Name=Msa1157500 |
| chr7_4 | mRNA | 46507600 | 46511601 | 46507600 | ID=Msa1157500-mRNA-1;Parent=Msa1157500;Name=Msa1157500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=43|1|1|1|1|1|4|212|390 |
| chr7_4 | exon | 46507600 | 46507917 | 46507600 | ID=Msa1157500-mRNA-1:exon:12212;Parent=Msa1157500-mRNA-1 |
| chr7_4 | exon | 46508128 | 46508387 | 46508128 | ID=Msa1157500-mRNA-1:exon:12211;Parent=Msa1157500-mRNA-1 |
| chr7_4 | exon | 46509268 | 46509408 | 46509268 | ID=Msa1157500-mRNA-1:exon:12210;Parent=Msa1157500-mRNA-1 |
| chr7_4 | exon | 46510893 | 46511601 | 46510893 | ID=Msa1157500-mRNA-1:exon:12209;Parent=Msa1157500-mRNA-1 |
| chr7_4 | five_prime_UTR | 46511559 | 46511601 | 46511559 | ID=Msa1157500-mRNA-1:five_prime_utr;Parent=Msa1157500-mRNA-1 |
| chr7_4 | CDS | 46510893 | 46511558 | 46510893 | ID=Msa1157500-mRNA-1:cds;Parent=Msa1157500-mRNA-1 |
| chr7_4 | CDS | 46509268 | 46509408 | 46509268 | ID=Msa1157500-mRNA-1:cds;Parent=Msa1157500-mRNA-1 |
| chr7_4 | CDS | 46508128 | 46508387 | 46508128 | ID=Msa1157500-mRNA-1:cds;Parent=Msa1157500-mRNA-1 |
| chr7_4 | CDS | 46507812 | 46507917 | 46507812 | ID=Msa1157500-mRNA-1:cds;Parent=Msa1157500-mRNA-1 |
| chr7_4 | three_prime_UTR | 46507600 | 46507811 | 46507600 | ID=Msa1157500-mRNA-1:three_prime_utr;Parent=Msa1157500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
