AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867720 MtrunA17_Chr4g0035031 97.895 190 3 1 1 189 1 190 8.52e-110 311
Msa0867720 MtrunA17_Chr4g0035051 88.235 85 10 0 1 85 1 85 1.31e-52 164
Msa0867720 MtrunA17_Chr4g0035001 83.673 98 16 0 4 101 2 99 1.10e-46 150
Msa0867720 MtrunA17_Chr2g0278661 56.180 89 38 1 1 89 1 88 1.37e-31 114
Msa0867720 MtrunA17_Chr4g0050781 57.647 85 36 0 3 87 2 86 2.88e-31 112
Msa0867720 MtrunA17_Chr1g0210241 50.617 81 40 0 7 87 6 86 3.78e-24 95.9
Msa0867720 MtrunA17_Chr3g0086861 47.059 85 45 0 3 87 39 123 6.51e-23 94.7
Msa0867720 MtrunA17_Chr3g0116631 51.852 81 39 0 8 88 206 286 7.18e-23 92.8
Msa0867720 MtrunA17_Chr3g0116631 39.506 81 49 0 9 89 110 190 2.44e-11 61.2
Msa0867720 MtrunA17_Chr4g0061451 47.500 80 42 0 9 88 43 122 2.31e-22 90.9
Msa0867720 MtrunA17_Chr7g0219021 44.578 83 46 0 9 91 41 123 6.65e-22 89.4
Msa0867720 MtrunA17_Chr3g0121631 50.633 79 38 1 9 87 37 114 1.22e-20 83.6
Msa0867720 MtrunA17_Chr4g0058151 50.617 81 40 0 8 88 216 296 1.64e-20 86.7
Msa0867720 MtrunA17_Chr4g0058151 40.964 83 49 0 8 90 122 204 3.81e-14 68.9
Msa0867720 MtrunA17_Chr1g0181111 50.575 87 43 0 2 88 190 276 2.46e-18 80.5
Msa0867720 MtrunA17_Chr1g0181111 36.283 113 71 1 9 120 85 197 3.95e-11 60.5
Msa0867720 MtrunA17_Chr3g0119311 40.244 82 49 0 9 90 37 118 2.54e-18 77.0
Msa0867720 MtrunA17_Chr7g0266751 40.741 81 48 0 6 86 30 110 3.90e-17 74.3
Msa0867720 MtrunA17_Chr3g0144311 46.053 76 40 1 9 84 30 104 2.07e-16 75.1
Msa0867720 MtrunA17_Chr4g0017401 41.000 100 52 4 5 99 12 109 2.90e-16 74.7
Msa0867720 MtrunA17_Chr1g0168601 41.463 82 48 0 4 85 149 230 1.96e-15 71.6
Msa0867720 MtrunA17_Chr5g0447761 37.975 79 47 1 9 87 7 83 1.97e-15 73.6
Msa0867720 MtrunA17_Chr5g0447761 32.258 93 62 1 9 101 107 198 3.47e-11 61.2
Msa0867720 MtrunA17_Chr3g0101061 37.975 79 47 1 9 87 41 117 2.98e-15 73.2
Msa0867720 MtrunA17_Chr3g0101061 31.126 151 87 4 9 144 141 289 6.59e-11 60.5
Msa0867720 MtrunA17_Chr7g0276531 46.053 76 40 1 9 84 19 93 5.04e-15 70.9
Msa0867720 MtrunA17_Chr3g0127751 28.485 165 98 3 9 170 27 174 8.35e-15 70.5
Msa0867720 MtrunA17_Chr2g0327921 39.024 82 50 0 9 90 8 89 8.52e-15 66.6
Msa0867720 MtrunA17_Chr2g0290191 39.241 79 46 1 9 87 5 81 9.15e-15 71.6
Msa0867720 MtrunA17_Chr2g0290191 33.607 122 71 3 9 120 107 228 2.66e-11 61.6
Msa0867720 MtrunA17_Chr5g0426311 44.737 76 41 1 9 84 17 91 9.57e-15 70.5
Msa0867720 MtrunA17_Chr1g0186351 35.443 79 49 1 9 87 7 83 1.69e-14 70.9
Msa0867720 MtrunA17_Chr1g0186351 33.117 154 89 5 9 151 113 263 5.34e-12 63.5
Msa0867720 MtrunA17_Chr8g0346011 33.594 128 78 3 9 130 38 164 1.98e-14 69.7
Msa0867720 MtrunA17_Chr4g0065741 37.500 96 57 1 1 96 67 159 4.32e-14 66.6
Msa0867720 MtrunA17_Chr6g0449481 38.095 84 50 1 9 92 46 127 9.08e-14 68.6
Msa0867720 MtrunA17_Chr3g0120721 36.585 82 50 1 9 90 19 98 1.84e-13 67.4
Msa0867720 MtrunA17_Chr3g0120721 33.333 138 85 2 9 146 107 237 2.11e-13 67.4
Msa0867720 MtrunA17_Chr7g0263001 37.931 87 54 0 1 87 28 114 3.16e-13 63.9
Msa0867720 MtrunA17_Chr7g0219031 42.424 66 38 0 9 74 41 106 4.02e-13 63.2
Msa0867720 MtrunA17_Chr5g0406171 32.386 176 98 6 10 170 133 302 9.18e-13 65.1
Msa0867720 MtrunA17_Chr6g0481071 38.750 80 49 0 9 88 96 175 1.07e-12 63.5
Msa0867720 MtrunA17_Chr4g0042161 38.298 94 52 2 11 101 54 144 1.78e-12 62.0
Msa0867720 MtrunA17_Chr5g0402191 41.250 80 43 2 9 87 5 81 2.43e-12 64.3
Msa0867720 MtrunA17_Chr4g0018581 44.444 72 40 0 10 81 453 524 8.20e-12 63.2
Msa0867720 MtrunA17_Chr4g0031091 39.726 73 44 0 9 81 34 106 9.51e-12 59.3
Msa0867720 MtrunA17_Chr1g0198431 35.870 92 56 1 9 97 193 284 1.04e-11 62.0
Msa0867720 MtrunA17_Chr3g0110211 39.175 97 58 1 3 98 107 203 1.78e-11 62.0
Msa0867720 MtrunA17_Chr3g0135111 29.851 134 88 2 9 137 118 250 2.10e-11 61.6
Msa0867720 MtrunA17_Chr5g0419351 36.957 92 58 0 10 101 12 103 3.22e-11 59.3
Msa0867720 MtrunA17_Chr4g0062931 39.837 123 65 6 10 126 9 128 3.49e-11 61.2
Msa0867720 MtrunA17_Chr3g0088511 38.356 73 45 0 9 81 33 105 6.70e-11 57.8
Msa0867720 MtrunA17_Chr8g0360551 35.955 89 55 2 9 97 74 160 7.24e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867720 AT4G39260.3 77.778 90 20 0 4 93 2 91 5.05e-48 152
Msa0867720 AT2G21660.2 78.824 85 18 0 1 85 1 85 3.86e-45 147
Msa0867720 AT2G21660.1 78.824 85 18 0 1 85 1 85 6.45e-45 147
Msa0867720 AT4G39260.1 75.610 82 20 0 4 85 2 83 2.57e-42 140
Msa0867720 AT4G39260.2 62.016 129 27 1 4 132 2 108 6.31e-36 122
Msa0867720 AT4G39260.4 76.119 67 16 0 4 70 2 68 3.83e-34 117
Msa0867720 AT3G26420.1 54.167 96 43 1 3 98 2 96 3.63e-31 114
Msa0867720 AT4G13850.2 54.217 83 38 0 9 91 36 118 3.84e-25 95.9
Msa0867720 AT3G23830.2 52.475 101 43 1 9 109 36 131 7.53e-24 92.0
Msa0867720 AT3G23830.1 52.475 101 43 1 9 109 36 131 7.53e-24 92.0
Msa0867720 AT5G04280.1 47.475 99 47 1 9 102 8 106 9.18e-24 95.9
Msa0867720 AT4G13850.3 56.566 99 43 0 9 107 36 134 1.46e-23 91.3
Msa0867720 AT4G13850.1 57.426 101 43 0 9 109 36 136 2.82e-23 90.9
Msa0867720 AT4G13850.4 56.383 94 40 1 9 101 36 129 3.96e-23 89.7
Msa0867720 AT5G61030.2 49.367 79 40 0 9 87 41 119 1.97e-22 92.4
Msa0867720 AT5G61030.1 49.367 79 40 0 9 87 41 119 1.97e-22 92.4
Msa0867720 AT2G21690.1 50.000 90 40 1 3 87 2 91 2.64e-21 84.7
Msa0867720 AT4G24770.1 47.561 82 43 0 8 89 244 325 1.59e-20 87.4
Msa0867720 AT4G24770.1 45.783 83 45 0 7 89 149 231 8.99e-16 74.3
Msa0867720 AT4G24770.2 47.561 82 43 0 8 89 244 325 1.59e-20 87.4
Msa0867720 AT4G24770.2 45.783 83 45 0 7 89 149 231 8.99e-16 74.3
Msa0867720 AT5G06210.1 44.318 88 49 0 6 93 32 119 1.85e-20 83.6
Msa0867720 AT5G50250.1 48.193 83 43 0 5 87 204 286 1.08e-19 84.7
Msa0867720 AT5G50250.1 44.578 83 46 0 7 89 112 194 1.93e-15 72.8
Msa0867720 AT3G53460.1 45.783 83 45 0 9 91 258 340 1.88e-19 84.7
Msa0867720 AT3G53460.3 45.783 83 45 0 9 91 258 340 1.88e-19 84.7
Msa0867720 AT3G53460.2 45.783 83 45 0 9 91 258 340 1.88e-19 84.7
Msa0867720 AT2G37220.1 45.679 81 44 0 9 89 205 285 2.61e-19 83.6
Msa0867720 AT3G53460.4 45.783 83 45 0 9 91 279 361 2.66e-19 84.3
Msa0867720 AT1G60650.2 42.169 83 48 0 5 87 9 91 3.84e-19 83.2
Msa0867720 AT1G60650.1 42.169 83 48 0 5 87 9 91 3.84e-19 83.2
Msa0867720 AT1G74230.1 52.688 93 39 2 1 93 31 118 5.13e-19 82.8
Msa0867720 AT3G07810.1 41.772 79 44 1 9 87 7 83 2.47e-17 79.3
Msa0867720 AT3G07810.1 32.847 137 73 4 9 130 109 241 1.70e-11 62.4
Msa0867720 AT3G07810.2 41.772 79 44 1 9 87 7 83 2.55e-17 79.3
Msa0867720 AT3G07810.2 32.847 137 73 4 9 130 109 241 1.67e-11 62.4
Msa0867720 AT1G76460.1 48.684 76 38 1 9 84 25 99 5.07e-17 77.4
Msa0867720 AT1G22330.1 44.118 102 51 3 9 105 18 118 9.28e-17 76.6
Msa0867720 AT1G18630.1 46.154 78 42 0 9 86 37 114 1.40e-16 73.6
Msa0867720 AT5G47320.1 46.753 77 41 0 9 85 32 108 2.04e-16 74.3
Msa0867720 AT4G26650.2 34.286 105 67 1 9 113 13 115 2.09e-16 76.6
Msa0867720 AT4G26650.1 34.286 105 67 1 9 113 16 118 2.14e-16 76.6
Msa0867720 AT4G14300.1 40.506 79 45 1 9 87 7 83 3.03e-16 76.3
Msa0867720 AT4G14300.2 40.506 79 45 1 9 87 7 83 3.03e-16 76.3
Msa0867720 AT1G20880.2 46.053 76 40 1 9 84 25 99 6.07e-16 74.3
Msa0867720 AT1G20880.3 46.053 76 40 1 9 84 25 99 6.07e-16 74.3
Msa0867720 AT1G20880.1 46.053 76 40 1 9 84 25 99 6.07e-16 74.3
Msa0867720 AT3G46020.1 42.857 77 44 0 9 85 8 84 1.74e-15 69.3
Msa0867720 AT1G22910.1 40.404 99 54 3 5 99 9 106 2.00e-15 72.4
Msa0867720 AT2G33410.1 39.241 79 46 1 9 87 7 83 2.44e-15 73.6
Msa0867720 AT2G33410.1 34.177 79 51 1 9 87 111 188 9.58e-11 60.1
Msa0867720 AT2G46780.1 46.053 76 40 1 9 84 23 97 2.61e-15 73.2
Msa0867720 AT2G46780.2 46.053 76 40 1 9 84 23 97 2.61e-15 73.2
Msa0867720 AT1G22910.2 40.404 99 54 3 5 99 9 106 2.73e-15 72.0
Msa0867720 AT3G13224.3 38.462 91 50 2 6 92 4 92 3.93e-15 72.8
Msa0867720 AT3G13224.3 32.955 88 58 1 3 89 94 181 9.10e-12 63.2
Msa0867720 AT3G13224.2 39.286 84 49 1 9 92 20 101 4.54e-15 72.4
Msa0867720 AT3G13224.2 32.955 88 58 1 3 89 103 190 2.77e-12 64.7
Msa0867720 AT5G55550.5 33.981 103 66 1 9 111 7 107 5.60e-15 72.4
Msa0867720 AT5G55550.4 33.981 103 66 1 9 111 7 107 5.60e-15 72.4
Msa0867720 AT5G55550.9 33.981 103 66 1 9 111 7 107 5.60e-15 72.4
Msa0867720 AT5G55550.7 33.981 103 66 1 9 111 7 107 5.60e-15 72.4
Msa0867720 AT5G55550.1 33.981 103 66 1 9 111 7 107 5.60e-15 72.4
Msa0867720 AT1G33470.3 43.421 76 42 1 9 84 8 82 6.17e-15 70.9
Msa0867720 AT5G55550.2 33.981 103 66 1 9 111 7 107 6.96e-15 72.4
Msa0867720 AT5G55550.3 33.981 103 66 1 9 111 7 107 6.96e-15 72.4
Msa0867720 AT5G55550.6 33.981 103 66 1 9 111 7 107 6.96e-15 72.4
Msa0867720 AT5G55550.11 33.981 103 66 1 9 111 7 107 6.96e-15 72.4
Msa0867720 AT1G33470.2 43.421 76 42 1 9 84 8 82 7.04e-15 70.9
Msa0867720 AT1G33470.1 43.421 76 42 1 9 84 8 82 7.50e-15 70.9
Msa0867720 AT1G17640.2 42.500 80 44 1 9 88 67 144 1.21e-14 71.2
Msa0867720 AT1G17640.1 42.500 80 44 1 9 88 67 144 1.21e-14 71.2
Msa0867720 AT1G17640.3 42.500 80 44 1 9 88 67 144 1.21e-14 71.2
Msa0867720 AT3G08000.1 43.678 87 43 2 9 92 42 125 1.68e-14 67.8
Msa0867720 AT1G22910.3 40.404 99 54 3 5 99 9 106 1.93e-14 70.9
Msa0867720 AT2G37510.1 45.946 74 40 0 9 82 35 108 2.35e-14 67.4
Msa0867720 AT5G59865.1 44.304 79 44 0 11 89 29 107 4.03e-14 65.9
Msa0867720 AT1G78260.1 43.210 81 44 2 5 84 13 92 5.34e-14 68.9
Msa0867720 AT3G54770.3 43.421 76 42 1 9 84 18 92 6.40e-14 68.6
Msa0867720 AT3G54770.1 43.421 76 42 1 9 84 18 92 8.07e-14 68.2
Msa0867720 AT1G78260.2 43.421 76 42 1 9 84 18 92 9.20e-14 68.2
Msa0867720 AT5G19960.1 35.897 117 66 2 10 126 9 116 2.45e-13 67.4
Msa0867720 AT5G53720.1 42.683 82 46 1 3 84 4 84 2.69e-13 63.5
Msa0867720 AT5G40490.1 38.542 96 57 1 9 104 43 136 4.63e-13 67.0
Msa0867720 AT1G60000.1 40.244 82 49 0 4 85 173 254 4.82e-13 65.9
Msa0867720 AT5G55550.8 40.278 72 41 1 9 80 7 76 5.31e-13 67.0
Msa0867720 AT2G27330.1 29.670 91 63 1 11 100 24 114 6.14e-13 62.8
Msa0867720 AT3G13224.1 39.286 84 49 1 9 92 20 101 6.27e-13 65.5
Msa0867720 AT5G55550.10 40.278 72 41 1 9 80 7 76 6.79e-13 66.6
Msa0867720 AT3G14100.1 42.308 78 45 0 7 84 143 220 7.37e-13 66.2
Msa0867720 AT2G14160.1 39.286 84 32 2 1 66 1 83 8.40e-13 61.6
Msa0867720 AT5G47620.1 36.709 79 48 1 9 87 7 83 8.72e-13 66.2
Msa0867720 AT5G47620.2 36.709 79 48 1 9 87 7 83 8.72e-13 66.2
Msa0867720 AT5G47620.5 36.709 79 48 1 9 87 7 83 8.72e-13 66.2
Msa0867720 AT4G13860.1 40.541 74 44 0 9 82 4 77 1.54e-12 61.2
Msa0867720 AT1G01080.1 41.772 79 41 2 7 83 211 286 2.17e-12 64.7
Msa0867720 AT1G01080.2 41.772 79 41 2 7 83 212 287 2.18e-12 64.7
Msa0867720 AT1G54080.1 42.308 78 45 0 7 84 147 224 3.50e-12 64.3
Msa0867720 AT3G06970.1 27.660 141 95 3 9 148 13 147 6.28e-12 63.5
Msa0867720 AT5G53680.1 46.377 69 36 1 9 77 14 81 6.32e-12 61.6
Msa0867720 AT5G51300.1 30.345 145 91 3 7 150 479 614 8.83e-12 63.5
Msa0867720 AT5G51300.2 30.345 145 91 3 7 150 479 614 8.83e-12 63.5
Msa0867720 AT5G51300.3 30.345 145 91 3 7 150 479 614 8.83e-12 63.5
Msa0867720 AT5G04280.3 47.059 68 31 1 40 102 1 68 1.18e-11 62.4
Msa0867720 AT5G04280.4 47.059 68 31 1 40 102 1 68 1.18e-11 62.4
Msa0867720 AT5G04280.5 47.059 68 31 1 40 102 1 68 1.18e-11 62.4
Msa0867720 AT5G04280.2 47.059 68 31 1 40 102 1 68 1.18e-11 62.4
Msa0867720 AT5G47620.4 37.500 72 43 1 9 80 7 76 1.23e-11 62.8
Msa0867720 AT4G27000.1 43.243 74 41 1 7 79 172 245 2.18e-11 62.0
Msa0867720 AT4G36960.1 36.782 87 53 1 6 90 1 87 4.27e-11 61.2
Msa0867720 AT4G36960.2 36.782 87 53 1 6 90 1 87 4.27e-11 61.2
Msa0867720 AT3G20930.1 35.000 80 52 0 9 88 283 362 5.32e-11 60.8
Msa0867720 AT2G22090.2 38.043 92 54 3 5 95 100 189 8.75e-11 60.1
Msa0867720 AT2G22090.1 38.043 92 54 3 5 95 100 189 9.35e-11 60.1

Find 103 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAACCCATCGAACTATT+AGG 0.243068 6_1:-787359 None:intergenic
ACTGGAAGATCAAGAGGTTT+TGG 0.244628 6_1:+787749 Msa0867720:CDS
GGTGGAGGTGGTGGTGGTTA+TGG 0.247285 6_1:+788040 Msa0867720:CDS
TGTCTTTATTGTCCTGAATC+TGG 0.270319 6_1:+788311 Msa0867720:three_prime_UTR
ACTGGAGGGATTAGAAAATT+AGG 0.300294 6_1:+788173 Msa0867720:exon
GGTGGCGGCGGTGGTGGATA+TGG 0.307147 6_1:+787899 Msa0867720:CDS
GGTGGTGGCGGTTATGGTGG+AGG 0.307721 6_1:+788001 Msa0867720:CDS
TTGGTTGAAGTTTAGTGATT+TGG 0.311002 6_1:+788254 Msa0867720:three_prime_UTR
TATGGTGGCGGCGGTGGTTA+TGG 0.314627 6_1:+787917 Msa0867720:CDS
GGAGGTGGTGGTGGTTATGG+TGG 0.314652 6_1:+788043 Msa0867720:CDS
AGTGGTGGTGGTGGCGGTTA+TGG 0.324812 6_1:+787995 Msa0867720:CDS
AAGAACCCATCGAACTATTA+GGG 0.328265 6_1:-787358 None:intergenic
GTTATCAATGATCGTGAAAC+TGG 0.330573 6_1:+787731 Msa0867720:CDS
GGTCGAGGTGGCGGCGGTGG+TGG 0.344552 6_1:+787893 Msa0867720:CDS
GGAGGTGGTGACCGTGGTTA+TGG 0.350450 6_1:+788094 Msa0867720:CDS
GGAGGTCGAGGTGGCGGCGG+TGG 0.351610 6_1:+787890 Msa0867720:CDS
GCTTCGTCGGTGGTCTTGCT+TGG 0.353153 6_1:+787399 Msa0867720:CDS
GTGCTGATAGCGGTGGAAAC+TGG 0.354817 6_1:+788155 Msa0867720:CDS
GTTTATACAAAACCAGATTC+AGG 0.358098 6_1:-788323 None:intergenic
GAGCAAGCCTTCTCTAAGTT+TGG 0.374142 6_1:+787443 Msa0867720:CDS
GTGGTGGCGGTTATGGTGGA+GGG 0.383697 6_1:+788002 Msa0867720:CDS
CGTGGATATGGTGGAGGTGG+TGG 0.384415 6_1:+788031 Msa0867720:CDS
CTTCGTCGGTGGTCTTGCTT+GGG 0.385202 6_1:+787400 Msa0867720:CDS
GGTGGTTATGGCGGAGGTGG+TGG 0.401287 6_1:+787929 Msa0867720:CDS
GGTGGTAGAGACCGTGGATA+TGG 0.401669 6_1:+788067 Msa0867720:CDS
TTGATTTAGTTTGATTTAGT+TGG 0.405201 6_1:+788235 Msa0867720:three_prime_UTR
GGTGGTGGTGGTTATGGTGG+AGG 0.410493 6_1:+788046 Msa0867720:CDS
GGCGGAGGTGGTGGTGGCTA+TGG 0.415407 6_1:+787938 Msa0867720:CDS
GGTGGTGGTGGCTATGGAGG+TGG 0.416082 6_1:+787944 Msa0867720:CDS
AGAAAATTAGGTCTTCAGTT+TGG 0.418164 6_1:+788185 Msa0867720:exon
CGTGGTTATGGTGGTGGAGG+TGG 0.419917 6_1:+788106 Msa0867720:CDS
GGAGGAGGTCGAGGTGGCGG+CGG 0.426267 6_1:+787887 Msa0867720:CDS
GGTGGATATGGTGGCGGCGG+TGG 0.432939 6_1:+787911 Msa0867720:CDS
GGCGGTGGTTATGGCGGAGG+TGG 0.433064 6_1:+787926 Msa0867720:CDS
GGAGGTGGTGGTGGCTATGG+AGG 0.438729 6_1:+787941 Msa0867720:CDS
GGATATGGTGGAGGTGGTGG+TGG 0.439317 6_1:+788034 Msa0867720:CDS
GGCCACCGATAGCCAAGCTC+TGG 0.439871 6_1:+787421 Msa0867720:CDS
GGTTATGGCGGAGGTGGTGG+TGG 0.443104 6_1:+787932 Msa0867720:CDS
GGTAGTGGTGGAGGAGGTCG+AGG 0.455825 6_1:+787878 Msa0867720:CDS
GGCGGCGGTGGTGGATATGG+TGG 0.462700 6_1:+787902 Msa0867720:CDS
GGTGGTGGTGGCGGTTATGG+TGG 0.463200 6_1:+787998 Msa0867720:CDS
GTATAAACGATTGATTGAAA+AGG 0.465420 6_1:+788338 Msa0867720:three_prime_UTR
TGGTGGCGGTTATGGTGGAG+GGG 0.468047 6_1:+788003 Msa0867720:CDS
GGTGGCGGTTATGGTGGAGG+GGG 0.468567 6_1:+788004 Msa0867720:CDS
GGTGGAGGAGGTCGAGGTGG+CGG 0.471160 6_1:+787884 Msa0867720:CDS
GGTTATGGTGGTGGAGGTGG+CGG 0.475016 6_1:+788109 Msa0867720:CDS
AGAAGGCTTGCTCCAGAGCT+TGG 0.478074 6_1:-787433 None:intergenic
GGTGATCGTGGATATGGTGG+AGG 0.478917 6_1:+788025 Msa0867720:CDS
CGTGGATATGGTGGTGGAGG+TGG 0.479477 6_1:+788079 Msa0867720:CDS
GGCGGCGGTGGTTATGGCGG+AGG 0.479896 6_1:+787923 Msa0867720:CDS
AGCAGAAGTGGTGGTGGTGG+CGG 0.484704 6_1:+787989 Msa0867720:CDS
GGCGGTGGTGGATATGGTGG+CGG 0.485442 6_1:+787905 Msa0867720:CDS
GAAGCTCAGTCCCGTGGTAG+TGG 0.495918 6_1:+787863 Msa0867720:CDS
GGTGGTGGTTATGGTGGAGG+TGG 0.498780 6_1:+788049 Msa0867720:CDS
AAATTAGGTCTTCAGTTTGG+TGG 0.507215 6_1:+788188 Msa0867720:three_prime_UTR
CAAGACCACCGACGAAGCAC+CGG 0.514431 6_1:-787394 None:intergenic
CAGTCCCGTGGTAGTGGTGG+AGG 0.515463 6_1:+787869 Msa0867720:CDS
GATCGCTACTCTCGCGGTGG+TGG 0.518871 6_1:+788133 Msa0867720:CDS
GATCGTGGATATGGTGGAGG+TGG 0.521221 6_1:+788028 Msa0867720:CDS
TCCCGTGGTAGTGGTGGAGG+AGG 0.528218 6_1:+787872 Msa0867720:CDS
GGAGGTGGTGGTCGACGTGA+TGG 0.531938 6_1:+787959 Msa0867720:CDS
GGTGACCGTGGTTATGGTGG+TGG 0.532821 6_1:+788100 Msa0867720:CDS
TACAGCAGAAGTGGTGGTGG+TGG 0.534700 6_1:+787986 Msa0867720:CDS
ACCTCCTCCACCACTACCAC+GGG 0.543580 6_1:-787873 None:intergenic
GACCGTGGTTATGGTGGTGG+AGG 0.549033 6_1:+788103 Msa0867720:CDS
AATTGAAGAGATGAACGGTC+AGG 0.551398 6_1:+787811 Msa0867720:CDS
GACCGTGGATATGGTGGTGG+AGG 0.551656 6_1:+788076 Msa0867720:CDS
TGGTGAAATCACTGATTCCA+AGG 0.553599 6_1:+787463 Msa0867720:CDS
GGTGGTGGATATGGTGGCGG+CGG 0.554336 6_1:+787908 Msa0867720:CDS
GGTGGCGGCGGTGGTTATGG+CGG 0.555099 6_1:+787920 Msa0867720:CDS
GGTGGTGGCTATGGAGGTGG+TGG 0.555533 6_1:+787947 Msa0867720:CDS
TTGCTCCAGAGCTTGGCTAT+CGG 0.556107 6_1:-787426 None:intergenic
AGAGACCGTGGATATGGTGG+TGG 0.557634 6_1:+788073 Msa0867720:CDS
CGTGAAACTGGAAGATCAAG+AGG 0.562850 6_1:+787743 Msa0867720:CDS
GCTCAGTCCCGTGGTAGTGG+TGG 0.563419 6_1:+787866 Msa0867720:CDS
GGTGGTGGTCGACGTGATGG+TGG 0.565795 6_1:+787962 Msa0867720:CDS
CGCGGTGGTGGTGCTGATAG+CGG 0.567365 6_1:+788145 Msa0867720:CDS
GGCGGTGATCGCTACTCTCG+CGG 0.570761 6_1:+788127 Msa0867720:CDS
CTCCAGAGCTTGGCTATCGG+TGG 0.571940 6_1:-787423 None:intergenic
GGTGGTGACCGTGGTTATGG+TGG 0.575688 6_1:+788097 Msa0867720:CDS
GATTTCACCAAACTTAGAGA+AGG 0.575852 6_1:-787450 None:intergenic
GACCTCCTCCACCACTACCA+CGG 0.582027 6_1:-787874 None:intergenic
GGATACAGCAGAAGTGGTGG+TGG 0.583391 6_1:+787983 Msa0867720:CDS
GTTGAGTACCGGTGCTTCGT+CGG 0.588309 6_1:+787386 Msa0867720:CDS
AGTGGTGGAGGAGGTCGAGG+TGG 0.601853 6_1:+787881 Msa0867720:CDS
CTGATAGCGGTGGAAACTGG+AGG 0.605217 6_1:+788158 Msa0867720:CDS
ATGAACGGTCAGGATATTGA+CGG 0.611489 6_1:+787821 Msa0867720:CDS
GAGTACCGGTGCTTCGTCGG+TGG 0.614835 6_1:+787389 Msa0867720:CDS
ACGGTCAGGATATTGACGGC+AGG 0.621480 6_1:+787825 Msa0867720:CDS
GTTCTTCTGATGTTGAGTAC+CGG 0.622558 6_1:+787375 Msa0867720:CDS
GGTGGTGGAGGTGGTGACCG+TGG 0.625086 6_1:+788088 Msa0867720:CDS
CACCTCCACCACCATATCCA+CGG 0.628164 6_1:-788078 None:intergenic
GGTAGAGACCGTGGATATGG+TGG 0.628309 6_1:+788070 Msa0867720:CDS
TGATAGCGGTGGAAACTGGA+GGG 0.650756 6_1:+788159 Msa0867720:CDS
GTGAATGAAGCTCAGTCCCG+TGG 0.655571 6_1:+787857 Msa0867720:CDS
AGAACCCATCGAACTATTAG+GGG 0.657602 6_1:-787357 None:intergenic
GGTGGAGGTGGTAGAGACCG+TGG 0.658126 6_1:+788061 Msa0867720:CDS
GATGCAATTGAAGAGATGAA+CGG 0.671848 6_1:+787806 Msa0867720:CDS
GATGGTGGATACAGCAGAAG+TGG 0.672149 6_1:+787977 Msa0867720:CDS
CACCTCCACCACCATAACCA+CGG 0.677931 6_1:-788105 None:intergenic
GGTGATCGCTACTCTCGCGG+TGG 0.687217 6_1:+788130 Msa0867720:CDS
GGTGGATACAGCAGAAGTGG+TGG 0.687566 6_1:+787980 Msa0867720:CDS
GGTGGTGGTGCTGATAGCGG+TGG 0.706620 6_1:+788148 Msa0867720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTAGTTTGATTTAGT+TGG + chr6_1:788235-788254 Msa0867720:three_prime_UTR 20.0%
!! TGAAAAGGATAATGAAAAAT+TGG + chr6_1:788353-788372 Msa0867720:three_prime_UTR 20.0%
!!! TTGATTTAGTTTGATTTAGT+TGG + chr6_1:788235-788254 Msa0867720:three_prime_UTR 20.0%
!! TGAAAAGGATAATGAAAAAT+TGG + chr6_1:788353-788372 Msa0867720:three_prime_UTR 20.0%
! GTATAAACGATTGATTGAAA+AGG + chr6_1:788338-788357 Msa0867720:three_prime_UTR 25.0%
! GTATAAACGATTGATTGAAA+AGG + chr6_1:788338-788357 Msa0867720:three_prime_UTR 25.0%
ATTAGGGGAAAAAAAGATGA+AGG - chr6_1:787345-787364 None:intergenic 30.0%
! TGTGAATTTTCTTAGATCTG+AGG + chr6_1:787694-787713 Msa0867720:intron 30.0%
!!! ATCTGAGGTTATTTTTGTTC+AGG + chr6_1:787709-787728 Msa0867720:intron 30.0%
AGAAAATTAGGTCTTCAGTT+TGG + chr6_1:788185-788204 Msa0867720:exon 30.0%
TTGGTTGAAGTTTAGTGATT+TGG + chr6_1:788254-788273 Msa0867720:three_prime_UTR 30.0%
GTTTATACAAAACCAGATTC+AGG - chr6_1:788326-788345 None:intergenic 30.0%
ATTAGGGGAAAAAAAGATGA+AGG - chr6_1:787345-787364 None:intergenic 30.0%
! TGTGAATTTTCTTAGATCTG+AGG + chr6_1:787694-787713 Msa0867720:intron 30.0%
!!! ATCTGAGGTTATTTTTGTTC+AGG + chr6_1:787709-787728 Msa0867720:intron 30.0%
AGAAAATTAGGTCTTCAGTT+TGG + chr6_1:788185-788204 Msa0867720:exon 30.0%
TTGGTTGAAGTTTAGTGATT+TGG + chr6_1:788254-788273 Msa0867720:three_prime_UTR 30.0%
GTTTATACAAAACCAGATTC+AGG - chr6_1:788326-788345 None:intergenic 30.0%
! TTTTTCCCCTAATAGTTCGA+TGG + chr6_1:787352-787371 Msa0867720:exon 35.0%
! TTTTCCCCTAATAGTTCGAT+GGG + chr6_1:787353-787372 Msa0867720:exon 35.0%
AAGAACCCATCGAACTATTA+GGG - chr6_1:787361-787380 None:intergenic 35.0%
GATTTCACCAAACTTAGAGA+AGG - chr6_1:787453-787472 None:intergenic 35.0%
! CTTTTGTTACTCACACCAAT+AGG + chr6_1:787590-787609 Msa0867720:intron 35.0%
ATGAAGATGAACGTACCTAT+TGG - chr6_1:787608-787627 None:intergenic 35.0%
ACCAAAAGAAGAAGATCGAT+CGG + chr6_1:787634-787653 Msa0867720:intron 35.0%
! AAGATCGATCGGTTTCTATT+CGG + chr6_1:787645-787664 Msa0867720:intron 35.0%
GTTATCAATGATCGTGAAAC+TGG + chr6_1:787731-787750 Msa0867720:CDS 35.0%
GATGCAATTGAAGAGATGAA+CGG + chr6_1:787806-787825 Msa0867720:CDS 35.0%
ACTGGAGGGATTAGAAAATT+AGG + chr6_1:788173-788192 Msa0867720:exon 35.0%
AAATTAGGTCTTCAGTTTGG+TGG + chr6_1:788188-788207 Msa0867720:three_prime_UTR 35.0%
TGTCTTTATTGTCCTGAATC+TGG + chr6_1:788311-788330 Msa0867720:three_prime_UTR 35.0%
! TTTTTCCCCTAATAGTTCGA+TGG + chr6_1:787352-787371 Msa0867720:exon 35.0%
! TTTTCCCCTAATAGTTCGAT+GGG + chr6_1:787353-787372 Msa0867720:exon 35.0%
AAGAACCCATCGAACTATTA+GGG - chr6_1:787361-787380 None:intergenic 35.0%
GATTTCACCAAACTTAGAGA+AGG - chr6_1:787453-787472 None:intergenic 35.0%
! CTTTTGTTACTCACACCAAT+AGG + chr6_1:787590-787609 Msa0867720:intron 35.0%
ATGAAGATGAACGTACCTAT+TGG - chr6_1:787608-787627 None:intergenic 35.0%
ACCAAAAGAAGAAGATCGAT+CGG + chr6_1:787634-787653 Msa0867720:intron 35.0%
! AAGATCGATCGGTTTCTATT+CGG + chr6_1:787645-787664 Msa0867720:intron 35.0%
GTTATCAATGATCGTGAAAC+TGG + chr6_1:787731-787750 Msa0867720:CDS 35.0%
GATGCAATTGAAGAGATGAA+CGG + chr6_1:787806-787825 Msa0867720:CDS 35.0%
ACTGGAGGGATTAGAAAATT+AGG + chr6_1:788173-788192 Msa0867720:exon 35.0%
AAATTAGGTCTTCAGTTTGG+TGG + chr6_1:788188-788207 Msa0867720:three_prime_UTR 35.0%
TGTCTTTATTGTCCTGAATC+TGG + chr6_1:788311-788330 Msa0867720:three_prime_UTR 35.0%
AGAACCCATCGAACTATTAG+GGG - chr6_1:787360-787379 None:intergenic 40.0%
GAAGAACCCATCGAACTATT+AGG - chr6_1:787362-787381 None:intergenic 40.0%
GTTCTTCTGATGTTGAGTAC+CGG + chr6_1:787375-787394 Msa0867720:CDS 40.0%
!! TGGTGAAATCACTGATTCCA+AGG + chr6_1:787463-787482 Msa0867720:CDS 40.0%
! ACCGATCGATCTTCTTCTTT+TGG - chr6_1:787638-787657 None:intergenic 40.0%
!! GATCGGTTTCTATTCGGTTT+TGG + chr6_1:787651-787670 Msa0867720:intron 40.0%
! ACTGGAAGATCAAGAGGTTT+TGG + chr6_1:787749-787768 Msa0867720:CDS 40.0%
AATTGAAGAGATGAACGGTC+AGG + chr6_1:787811-787830 Msa0867720:CDS 40.0%
ATGAACGGTCAGGATATTGA+CGG + chr6_1:787821-787840 Msa0867720:CDS 40.0%
! ATTTTGAGCAGTGAACTCAG+AGG - chr6_1:787317-787336 None:intergenic 40.0%
AGAACCCATCGAACTATTAG+GGG - chr6_1:787360-787379 None:intergenic 40.0%
GAAGAACCCATCGAACTATT+AGG - chr6_1:787362-787381 None:intergenic 40.0%
GTTCTTCTGATGTTGAGTAC+CGG + chr6_1:787375-787394 Msa0867720:CDS 40.0%
!! TGGTGAAATCACTGATTCCA+AGG + chr6_1:787463-787482 Msa0867720:CDS 40.0%
! ACCGATCGATCTTCTTCTTT+TGG - chr6_1:787638-787657 None:intergenic 40.0%
!! GATCGGTTTCTATTCGGTTT+TGG + chr6_1:787651-787670 Msa0867720:intron 40.0%
! ACTGGAAGATCAAGAGGTTT+TGG + chr6_1:787749-787768 Msa0867720:CDS 40.0%
AATTGAAGAGATGAACGGTC+AGG + chr6_1:787811-787830 Msa0867720:CDS 40.0%
ATGAACGGTCAGGATATTGA+CGG + chr6_1:787821-787840 Msa0867720:CDS 40.0%
GAGCAAGCCTTCTCTAAGTT+TGG + chr6_1:787443-787462 Msa0867720:CDS 45.0%
AATCCGAATCAGAATCCGCA+CGG - chr6_1:787490-787509 None:intergenic 45.0%
CGTGAAACTGGAAGATCAAG+AGG + chr6_1:787743-787762 Msa0867720:CDS 45.0%
GAGCAAGCCTTCTCTAAGTT+TGG + chr6_1:787443-787462 Msa0867720:CDS 45.0%
AATCCGAATCAGAATCCGCA+CGG - chr6_1:787490-787509 None:intergenic 45.0%
CGTGAAACTGGAAGATCAAG+AGG + chr6_1:787743-787762 Msa0867720:CDS 45.0%
TTGCTCCAGAGCTTGGCTAT+CGG - chr6_1:787429-787448 None:intergenic 50.0%
!! GATGGTGGATACAGCAGAAG+TGG + chr6_1:787977-787996 Msa0867720:CDS 50.0%
!! TGATAGCGGTGGAAACTGGA+GGG + chr6_1:788159-788178 Msa0867720:CDS 50.0%
TTGCTCCAGAGCTTGGCTAT+CGG - chr6_1:787429-787448 None:intergenic 50.0%
!! GATGGTGGATACAGCAGAAG+TGG + chr6_1:787977-787996 Msa0867720:CDS 50.0%
!! TGATAGCGGTGGAAACTGGA+GGG + chr6_1:788159-788178 Msa0867720:CDS 50.0%
!! GTTGAGTACCGGTGCTTCGT+CGG + chr6_1:787386-787405 Msa0867720:CDS 55.0%
! CTTCGTCGGTGGTCTTGCTT+GGG + chr6_1:787400-787419 Msa0867720:CDS 55.0%
! AGAAGGCTTGCTCCAGAGCT+TGG - chr6_1:787436-787455 None:intergenic 55.0%
!! CACTGATTCCAAGGTCCGTG+CGG + chr6_1:787472-787491 Msa0867720:intron 55.0%
ATCAGAATCCGCACGGACCT+TGG - chr6_1:787483-787502 None:intergenic 55.0%
GGTCCGTGCGGATTCTGATT+CGG + chr6_1:787484-787503 Msa0867720:intron 55.0%
ACGGTCAGGATATTGACGGC+AGG + chr6_1:787825-787844 Msa0867720:CDS 55.0%
GTGAATGAAGCTCAGTCCCG+TGG + chr6_1:787857-787876 Msa0867720:CDS 55.0%
GGTGGATACAGCAGAAGTGG+TGG + chr6_1:787980-787999 Msa0867720:CDS 55.0%
GGATACAGCAGAAGTGGTGG+TGG + chr6_1:787983-788002 Msa0867720:CDS 55.0%
!! TACAGCAGAAGTGGTGGTGG+TGG + chr6_1:787986-788005 Msa0867720:CDS 55.0%
GGTGATCGTGGATATGGTGG+AGG + chr6_1:788025-788044 Msa0867720:CDS 55.0%
! GATCGTGGATATGGTGGAGG+TGG + chr6_1:788028-788047 Msa0867720:CDS 55.0%
GGTGGTAGAGACCGTGGATA+TGG + chr6_1:788067-788086 Msa0867720:CDS 55.0%
GGTAGAGACCGTGGATATGG+TGG + chr6_1:788070-788089 Msa0867720:CDS 55.0%
AGAGACCGTGGATATGGTGG+TGG + chr6_1:788073-788092 Msa0867720:CDS 55.0%
CACCTCCACCACCATATCCA+CGG - chr6_1:788081-788100 None:intergenic 55.0%
CACCTCCACCACCATAACCA+CGG - chr6_1:788108-788127 None:intergenic 55.0%
!! GTGCTGATAGCGGTGGAAAC+TGG + chr6_1:788155-788174 Msa0867720:CDS 55.0%
!! CTGATAGCGGTGGAAACTGG+AGG + chr6_1:788158-788177 Msa0867720:CDS 55.0%
!! GTTGAGTACCGGTGCTTCGT+CGG + chr6_1:787386-787405 Msa0867720:CDS 55.0%
! CTTCGTCGGTGGTCTTGCTT+GGG + chr6_1:787400-787419 Msa0867720:CDS 55.0%
! AGAAGGCTTGCTCCAGAGCT+TGG - chr6_1:787436-787455 None:intergenic 55.0%
!! CACTGATTCCAAGGTCCGTG+CGG + chr6_1:787472-787491 Msa0867720:intron 55.0%
ATCAGAATCCGCACGGACCT+TGG - chr6_1:787483-787502 None:intergenic 55.0%
GGTCCGTGCGGATTCTGATT+CGG + chr6_1:787484-787503 Msa0867720:intron 55.0%
ACGGTCAGGATATTGACGGC+AGG + chr6_1:787825-787844 Msa0867720:CDS 55.0%
GTGAATGAAGCTCAGTCCCG+TGG + chr6_1:787857-787876 Msa0867720:CDS 55.0%
GGTGGATACAGCAGAAGTGG+TGG + chr6_1:787980-787999 Msa0867720:CDS 55.0%
GGATACAGCAGAAGTGGTGG+TGG + chr6_1:787983-788002 Msa0867720:CDS 55.0%
!! TACAGCAGAAGTGGTGGTGG+TGG + chr6_1:787986-788005 Msa0867720:CDS 55.0%
GGTGATCGTGGATATGGTGG+AGG + chr6_1:788025-788044 Msa0867720:CDS 55.0%
! GATCGTGGATATGGTGGAGG+TGG + chr6_1:788028-788047 Msa0867720:CDS 55.0%
GGTGGTAGAGACCGTGGATA+TGG + chr6_1:788067-788086 Msa0867720:CDS 55.0%
GGTAGAGACCGTGGATATGG+TGG + chr6_1:788070-788089 Msa0867720:CDS 55.0%
AGAGACCGTGGATATGGTGG+TGG + chr6_1:788073-788092 Msa0867720:CDS 55.0%
CACCTCCACCACCATATCCA+CGG - chr6_1:788081-788100 None:intergenic 55.0%
CACCTCCACCACCATAACCA+CGG - chr6_1:788108-788127 None:intergenic 55.0%
!! GTGCTGATAGCGGTGGAAAC+TGG + chr6_1:788155-788174 Msa0867720:CDS 55.0%
!! CTGATAGCGGTGGAAACTGG+AGG + chr6_1:788158-788177 Msa0867720:CDS 55.0%
CAAGACCACCGACGAAGCAC+CGG - chr6_1:787397-787416 None:intergenic 60.0%
! GCTTCGTCGGTGGTCTTGCT+TGG + chr6_1:787399-787418 Msa0867720:CDS 60.0%
CTCCAGAGCTTGGCTATCGG+TGG - chr6_1:787426-787445 None:intergenic 60.0%
GAAGCTCAGTCCCGTGGTAG+TGG + chr6_1:787863-787882 Msa0867720:CDS 60.0%
ACCTCCTCCACCACTACCAC+GGG - chr6_1:787876-787895 None:intergenic 60.0%
GACCTCCTCCACCACTACCA+CGG - chr6_1:787877-787896 None:intergenic 60.0%
!! TATGGTGGCGGCGGTGGTTA+TGG + chr6_1:787917-787936 Msa0867720:CDS 60.0%
!! AGCAGAAGTGGTGGTGGTGG+CGG + chr6_1:787989-788008 Msa0867720:CDS 60.0%
!! AGTGGTGGTGGTGGCGGTTA+TGG + chr6_1:787995-788014 Msa0867720:CDS 60.0%
!! GTGGTGGCGGTTATGGTGGA+GGG + chr6_1:788002-788021 Msa0867720:CDS 60.0%
!! TGGTGGCGGTTATGGTGGAG+GGG + chr6_1:788003-788022 Msa0867720:CDS 60.0%
! TATGGTGGAGGGGGTGATCG+TGG + chr6_1:788013-788032 Msa0867720:CDS 60.0%
GGAGGGGGTGATCGTGGATA+TGG + chr6_1:788019-788038 Msa0867720:CDS 60.0%
GGGGGTGATCGTGGATATGG+TGG + chr6_1:788022-788041 Msa0867720:CDS 60.0%
! CGTGGATATGGTGGAGGTGG+TGG + chr6_1:788031-788050 Msa0867720:CDS 60.0%
! GGATATGGTGGAGGTGGTGG+TGG + chr6_1:788034-788053 Msa0867720:CDS 60.0%
!! GGTGGAGGTGGTGGTGGTTA+TGG + chr6_1:788040-788059 Msa0867720:CDS 60.0%
!! GGAGGTGGTGGTGGTTATGG+TGG + chr6_1:788043-788062 Msa0867720:CDS 60.0%
!! GGTGGTGGTGGTTATGGTGG+AGG + chr6_1:788046-788065 Msa0867720:CDS 60.0%
! GGTGGTGGTTATGGTGGAGG+TGG + chr6_1:788049-788068 Msa0867720:CDS 60.0%
!! GACCGTGGATATGGTGGTGG+AGG + chr6_1:788076-788095 Msa0867720:CDS 60.0%
!! CGTGGATATGGTGGTGGAGG+TGG + chr6_1:788079-788098 Msa0867720:CDS 60.0%
GGAGGTGGTGACCGTGGTTA+TGG + chr6_1:788094-788113 Msa0867720:CDS 60.0%
GGTGGTGACCGTGGTTATGG+TGG + chr6_1:788097-788116 Msa0867720:CDS 60.0%
GGTGACCGTGGTTATGGTGG+TGG + chr6_1:788100-788119 Msa0867720:CDS 60.0%
!! GACCGTGGTTATGGTGGTGG+AGG + chr6_1:788103-788122 Msa0867720:CDS 60.0%
!! CGTGGTTATGGTGGTGGAGG+TGG + chr6_1:788106-788125 Msa0867720:CDS 60.0%
!! GGTTATGGTGGTGGAGGTGG+CGG + chr6_1:788109-788128 Msa0867720:CDS 60.0%
CAAGACCACCGACGAAGCAC+CGG - chr6_1:787397-787416 None:intergenic 60.0%
! GCTTCGTCGGTGGTCTTGCT+TGG + chr6_1:787399-787418 Msa0867720:CDS 60.0%
CTCCAGAGCTTGGCTATCGG+TGG - chr6_1:787426-787445 None:intergenic 60.0%
GAAGCTCAGTCCCGTGGTAG+TGG + chr6_1:787863-787882 Msa0867720:CDS 60.0%
ACCTCCTCCACCACTACCAC+GGG - chr6_1:787876-787895 None:intergenic 60.0%
GACCTCCTCCACCACTACCA+CGG - chr6_1:787877-787896 None:intergenic 60.0%
!! TATGGTGGCGGCGGTGGTTA+TGG + chr6_1:787917-787936 Msa0867720:CDS 60.0%
!! AGCAGAAGTGGTGGTGGTGG+CGG + chr6_1:787989-788008 Msa0867720:CDS 60.0%
!! AGTGGTGGTGGTGGCGGTTA+TGG + chr6_1:787995-788014 Msa0867720:CDS 60.0%
!! GTGGTGGCGGTTATGGTGGA+GGG + chr6_1:788002-788021 Msa0867720:CDS 60.0%
!! TGGTGGCGGTTATGGTGGAG+GGG + chr6_1:788003-788022 Msa0867720:CDS 60.0%
! TATGGTGGAGGGGGTGATCG+TGG + chr6_1:788013-788032 Msa0867720:CDS 60.0%
GGAGGGGGTGATCGTGGATA+TGG + chr6_1:788019-788038 Msa0867720:CDS 60.0%
GGGGGTGATCGTGGATATGG+TGG + chr6_1:788022-788041 Msa0867720:CDS 60.0%
! CGTGGATATGGTGGAGGTGG+TGG + chr6_1:788031-788050 Msa0867720:CDS 60.0%
! GGATATGGTGGAGGTGGTGG+TGG + chr6_1:788034-788053 Msa0867720:CDS 60.0%
!! GGTGGAGGTGGTGGTGGTTA+TGG + chr6_1:788040-788059 Msa0867720:CDS 60.0%
!! GGAGGTGGTGGTGGTTATGG+TGG + chr6_1:788043-788062 Msa0867720:CDS 60.0%
!! GGTGGTGGTGGTTATGGTGG+AGG + chr6_1:788046-788065 Msa0867720:CDS 60.0%
! GGTGGTGGTTATGGTGGAGG+TGG + chr6_1:788049-788068 Msa0867720:CDS 60.0%
!! GACCGTGGATATGGTGGTGG+AGG + chr6_1:788076-788095 Msa0867720:CDS 60.0%
!! CGTGGATATGGTGGTGGAGG+TGG + chr6_1:788079-788098 Msa0867720:CDS 60.0%
GGAGGTGGTGACCGTGGTTA+TGG + chr6_1:788094-788113 Msa0867720:CDS 60.0%
GGTGGTGACCGTGGTTATGG+TGG + chr6_1:788097-788116 Msa0867720:CDS 60.0%
GGTGACCGTGGTTATGGTGG+TGG + chr6_1:788100-788119 Msa0867720:CDS 60.0%
!! GACCGTGGTTATGGTGGTGG+AGG + chr6_1:788103-788122 Msa0867720:CDS 60.0%
!! CGTGGTTATGGTGGTGGAGG+TGG + chr6_1:788106-788125 Msa0867720:CDS 60.0%
!! GGTTATGGTGGTGGAGGTGG+CGG + chr6_1:788109-788128 Msa0867720:CDS 60.0%
!! GAGTACCGGTGCTTCGTCGG+TGG + chr6_1:787389-787408 Msa0867720:CDS 65.0%
GGCCACCGATAGCCAAGCTC+TGG + chr6_1:787421-787440 Msa0867720:CDS 65.0%
!! GCTCAGTCCCGTGGTAGTGG+TGG + chr6_1:787866-787885 Msa0867720:CDS 65.0%
!! CAGTCCCGTGGTAGTGGTGG+AGG + chr6_1:787869-787888 Msa0867720:CDS 65.0%
!! TCCCGTGGTAGTGGTGGAGG+AGG + chr6_1:787872-787891 Msa0867720:CDS 65.0%
! GGTAGTGGTGGAGGAGGTCG+AGG + chr6_1:787878-787897 Msa0867720:CDS 65.0%
! AGTGGTGGAGGAGGTCGAGG+TGG + chr6_1:787881-787900 Msa0867720:CDS 65.0%
!! GGCGGTGGTGGATATGGTGG+CGG + chr6_1:787905-787924 Msa0867720:CDS 65.0%
!! GGTGGTGGATATGGTGGCGG+CGG + chr6_1:787908-787927 Msa0867720:CDS 65.0%
! GGTGGTTATGGCGGAGGTGG+TGG + chr6_1:787929-787948 Msa0867720:CDS 65.0%
! GGTTATGGCGGAGGTGGTGG+TGG + chr6_1:787932-787951 Msa0867720:CDS 65.0%
!! GGAGGTGGTGGTGGCTATGG+AGG + chr6_1:787941-787960 Msa0867720:CDS 65.0%
!! GGTGGTGGTGGCTATGGAGG+TGG + chr6_1:787944-787963 Msa0867720:CDS 65.0%
! GGTGGTGGCTATGGAGGTGG+TGG + chr6_1:787947-787966 Msa0867720:CDS 65.0%
! GGAGGTGGTGGTCGACGTGA+TGG + chr6_1:787959-787978 Msa0867720:CDS 65.0%
! GGTGGTGGTCGACGTGATGG+TGG + chr6_1:787962-787981 Msa0867720:CDS 65.0%
!! GGTGGTGGTGGCGGTTATGG+TGG + chr6_1:787998-788017 Msa0867720:CDS 65.0%
!! GGTGGTGGCGGTTATGGTGG+AGG + chr6_1:788001-788020 Msa0867720:CDS 65.0%
! GGTGGCGGTTATGGTGGAGG+GGG + chr6_1:788004-788023 Msa0867720:CDS 65.0%
GGTGGAGGTGGTAGAGACCG+TGG + chr6_1:788061-788080 Msa0867720:CDS 65.0%
GGCGGTGATCGCTACTCTCG+CGG + chr6_1:788127-788146 Msa0867720:CDS 65.0%
GGTGATCGCTACTCTCGCGG+TGG + chr6_1:788130-788149 Msa0867720:CDS 65.0%
GATCGCTACTCTCGCGGTGG+TGG + chr6_1:788133-788152 Msa0867720:CDS 65.0%
!! CGCGGTGGTGGTGCTGATAG+CGG + chr6_1:788145-788164 Msa0867720:CDS 65.0%
!! GGTGGTGGTGCTGATAGCGG+TGG + chr6_1:788148-788167 Msa0867720:CDS 65.0%
!! GAGTACCGGTGCTTCGTCGG+TGG + chr6_1:787389-787408 Msa0867720:CDS 65.0%
GGCCACCGATAGCCAAGCTC+TGG + chr6_1:787421-787440 Msa0867720:CDS 65.0%
!! GCTCAGTCCCGTGGTAGTGG+TGG + chr6_1:787866-787885 Msa0867720:CDS 65.0%
!! CAGTCCCGTGGTAGTGGTGG+AGG + chr6_1:787869-787888 Msa0867720:CDS 65.0%
!! TCCCGTGGTAGTGGTGGAGG+AGG + chr6_1:787872-787891 Msa0867720:CDS 65.0%
! GGTAGTGGTGGAGGAGGTCG+AGG + chr6_1:787878-787897 Msa0867720:CDS 65.0%
! AGTGGTGGAGGAGGTCGAGG+TGG + chr6_1:787881-787900 Msa0867720:CDS 65.0%
!! GGCGGTGGTGGATATGGTGG+CGG + chr6_1:787905-787924 Msa0867720:CDS 65.0%
!! GGTGGTGGATATGGTGGCGG+CGG + chr6_1:787908-787927 Msa0867720:CDS 65.0%
! GGTGGTTATGGCGGAGGTGG+TGG + chr6_1:787929-787948 Msa0867720:CDS 65.0%
! GGTTATGGCGGAGGTGGTGG+TGG + chr6_1:787932-787951 Msa0867720:CDS 65.0%
!! GGAGGTGGTGGTGGCTATGG+AGG + chr6_1:787941-787960 Msa0867720:CDS 65.0%
!! GGTGGTGGTGGCTATGGAGG+TGG + chr6_1:787944-787963 Msa0867720:CDS 65.0%
! GGTGGTGGCTATGGAGGTGG+TGG + chr6_1:787947-787966 Msa0867720:CDS 65.0%
! GGAGGTGGTGGTCGACGTGA+TGG + chr6_1:787959-787978 Msa0867720:CDS 65.0%
! GGTGGTGGTCGACGTGATGG+TGG + chr6_1:787962-787981 Msa0867720:CDS 65.0%
!! GGTGGTGGTGGCGGTTATGG+TGG + chr6_1:787998-788017 Msa0867720:CDS 65.0%
!! GGTGGTGGCGGTTATGGTGG+AGG + chr6_1:788001-788020 Msa0867720:CDS 65.0%
! GGTGGCGGTTATGGTGGAGG+GGG + chr6_1:788004-788023 Msa0867720:CDS 65.0%
GGTGGAGGTGGTAGAGACCG+TGG + chr6_1:788061-788080 Msa0867720:CDS 65.0%
GGCGGTGATCGCTACTCTCG+CGG + chr6_1:788127-788146 Msa0867720:CDS 65.0%
GGTGATCGCTACTCTCGCGG+TGG + chr6_1:788130-788149 Msa0867720:CDS 65.0%
GATCGCTACTCTCGCGGTGG+TGG + chr6_1:788133-788152 Msa0867720:CDS 65.0%
!! CGCGGTGGTGGTGCTGATAG+CGG + chr6_1:788145-788164 Msa0867720:CDS 65.0%
!! GGTGGTGGTGCTGATAGCGG+TGG + chr6_1:788148-788167 Msa0867720:CDS 65.0%
GGTGGAGGAGGTCGAGGTGG+CGG + chr6_1:787884-787903 Msa0867720:CDS 70.0%
!! GGTGGCGGCGGTGGTGGATA+TGG + chr6_1:787899-787918 Msa0867720:CDS 70.0%
!! GGCGGCGGTGGTGGATATGG+TGG + chr6_1:787902-787921 Msa0867720:CDS 70.0%
!! GGTGGATATGGTGGCGGCGG+TGG + chr6_1:787911-787930 Msa0867720:CDS 70.0%
! GGTGGCGGCGGTGGTTATGG+CGG + chr6_1:787920-787939 Msa0867720:CDS 70.0%
! GGCGGTGGTTATGGCGGAGG+TGG + chr6_1:787926-787945 Msa0867720:CDS 70.0%
!! GGCGGAGGTGGTGGTGGCTA+TGG + chr6_1:787938-787957 Msa0867720:CDS 70.0%
!! GGTGGTGGAGGTGGTGACCG+TGG + chr6_1:788088-788107 Msa0867720:CDS 70.0%
GGTGGAGGAGGTCGAGGTGG+CGG + chr6_1:787884-787903 Msa0867720:CDS 70.0%
!! GGTGGCGGCGGTGGTGGATA+TGG + chr6_1:787899-787918 Msa0867720:CDS 70.0%
!! GGCGGCGGTGGTGGATATGG+TGG + chr6_1:787902-787921 Msa0867720:CDS 70.0%
!! GGTGGATATGGTGGCGGCGG+TGG + chr6_1:787911-787930 Msa0867720:CDS 70.0%
! GGTGGCGGCGGTGGTTATGG+CGG + chr6_1:787920-787939 Msa0867720:CDS 70.0%
! GGCGGTGGTTATGGCGGAGG+TGG + chr6_1:787926-787945 Msa0867720:CDS 70.0%
!! GGCGGAGGTGGTGGTGGCTA+TGG + chr6_1:787938-787957 Msa0867720:CDS 70.0%
!! GGTGGTGGAGGTGGTGACCG+TGG + chr6_1:788088-788107 Msa0867720:CDS 70.0%
! GGAGGAGGTCGAGGTGGCGG+CGG + chr6_1:787887-787906 Msa0867720:CDS 75.0%
GGCGGCGGTGGTTATGGCGG+AGG + chr6_1:787923-787942 Msa0867720:CDS 75.0%
! GGAGGAGGTCGAGGTGGCGG+CGG + chr6_1:787887-787906 Msa0867720:CDS 75.0%
GGCGGCGGTGGTTATGGCGG+AGG + chr6_1:787923-787942 Msa0867720:CDS 75.0%
!! GGAGGTCGAGGTGGCGGCGG+TGG + chr6_1:787890-787909 Msa0867720:CDS 80.0%
!! GGTCGAGGTGGCGGCGGTGG+TGG + chr6_1:787893-787912 Msa0867720:CDS 80.0%
!! GGAGGTCGAGGTGGCGGCGG+TGG + chr6_1:787890-787909 Msa0867720:CDS 80.0%
!! GGTCGAGGTGGCGGCGGTGG+TGG + chr6_1:787893-787912 Msa0867720:CDS 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 787316 788395 787316 ID=Msa0867720;Name=Msa0867720
chr6_1 mRNA 787316 788395 787316 ID=Msa0867720-mRNA-1;Parent=Msa0867720;Name=Msa0867720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=55|1|1|1|1|1|2|209|189
chr6_1 exon 787316 787484 787316 ID=Msa0867720-mRNA-1:exon:205;Parent=Msa0867720-mRNA-1
chr6_1 exon 787731 788395 787731 ID=Msa0867720-mRNA-1:exon:206;Parent=Msa0867720-mRNA-1
chr6_1 five_prime_UTR 787316 787370 787316 ID=Msa0867720-mRNA-1:five_prime_utr;Parent=Msa0867720-mRNA-1
chr6_1 CDS 787371 787484 787371 ID=Msa0867720-mRNA-1:cds;Parent=Msa0867720-mRNA-1
chr6_1 CDS 787731 788186 787731 ID=Msa0867720-mRNA-1:cds;Parent=Msa0867720-mRNA-1
chr6_1 three_prime_UTR 788187 788395 788187 ID=Msa0867720-mRNA-1:three_prime_utr;Parent=Msa0867720-mRNA-1
Gene Sequence

>Msa0867720

ATGGGTTCTTCTGATGTTGAGTACCGGTGCTTCGTCGGTGGTCTTGCTTGGGCCACCGATAGCCAAGCTCTGGAGCAAGCCTTCTCTAAGTTTGGTGAAATCACTGATTCCAAGGTTATCAATGATCGTGAAACTGGAAGATCAAGAGGTTTTGGATTTGTGACATTCGCTGATGAGAAATCGATGAGAGATGCAATTGAAGAGATGAACGGTCAGGATATTGACGGCAGGAATATAACTGTGAATGAAGCTCAGTCCCGTGGTAGTGGTGGAGGAGGTCGAGGTGGCGGCGGTGGTGGATATGGTGGCGGCGGTGGTTATGGCGGAGGTGGTGGTGGCTATGGAGGTGGTGGTCGACGTGATGGTGGATACAGCAGAAGTGGTGGTGGTGGCGGTTATGGTGGAGGGGGTGATCGTGGATATGGTGGAGGTGGTGGTGGTTATGGTGGAGGTGGTAGAGACCGTGGATATGGTGGTGGAGGTGGTGACCGTGGTTATGGTGGTGGAGGTGGCGGTGATCGCTACTCTCGCGGTGGTGGTGCTGATAGCGGTGGAAACTGGAGGGATTAG
Protein sequence

>Msa0867720

MGSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFADEKSMRDAIEEMNGQDIDGRNITVNEAQSRGSGGGGRGGGGGGYGGGGGYGGGGGGYGGGGRRDGGYSRSGGGGGYGGGGDRGYGGGGGGYGGGGRDRGYGGGGGDRGYGGGGGGDRYSRGGGADSGGNWRD*