AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169050 MtrunA17_Chr7g0264071 90.057 352 4 2 1 345 1 328 0.0 637
Msa1169050 MtrunA17_Chr1g0181351 68.091 351 99 7 1 344 1 345 8.83e-151 428
Msa1169050 MtrunA17_Chr2g0287731 50.193 259 120 4 96 345 127 385 1.81e-85 263
Msa1169050 MtrunA17_Chr4g0065661 45.364 302 146 8 58 345 61 357 2.47e-82 254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169050 AT3G09770.1 65.169 267 87 3 80 341 104 369 1.13e-119 351
Msa1169050 AT3G53410.1 56.667 300 105 7 48 345 21 297 2.72e-108 318
Msa1169050 AT5G03200.1 51.143 350 143 7 1 339 1 333 6.54e-105 311
Msa1169050 AT3G09770.2 60.169 236 88 3 80 310 104 338 4.76e-93 281
Msa1169050 AT5G19080.1 47.651 298 140 6 59 345 83 375 3.20e-85 262
Msa1169050 AT3G06140.1 45.946 296 146 6 56 345 69 356 3.83e-76 238

Find 140 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGATCATCATTTCAAAATT+AGG 0.094840 7_4:+61989276 Msa1169050:five_prime_UTR
ACCTTTGATGCTGCCGTATC+TGG 0.118140 7_4:+61989723 Msa1169050:CDS
AATTGATGAGGTGCGATTTC+GGG 0.192329 7_4:-61989417 None:intergenic
GGTTTCTCCCTCATTTATTC+TGG 0.202826 7_4:+61994392 Msa1169050:three_prime_UTR
CGATCATCATTTCAAAATTA+GGG 0.236357 7_4:+61989277 Msa1169050:five_prime_UTR
TAATAATGGAATATAGAAAT+AGG 0.236799 7_4:-61989135 None:intergenic
TGGACTGTACAGGAAGTTTA+TGG 0.242147 7_4:-61994317 None:intergenic
GAATTGATGAGGTGCGATTT+CGG 0.285307 7_4:-61989418 None:intergenic
ACAACCAGTTGAAAGGCTTT+TGG 0.292916 7_4:+61994249 Msa1169050:CDS
GGATAATGCATGGGTGGGTT+AGG 0.322234 7_4:-61989465 None:intergenic
GATGATGATGGTGGGTATAA+TGG 0.341069 7_4:-61989098 None:intergenic
ATTTCGGGTTGTGGTGTTAC+CGG 0.350931 7_4:-61989402 None:intergenic
ATCTGATCCATCATGATTAC+CGG 0.362191 7_4:-61993649 None:intergenic
GTTACCGGAGGTGGTGGTGG+TGG 0.364733 7_4:-61989387 None:intergenic
TCCTCATATGGATCCTGCTT+GGG 0.365700 7_4:+61989542 Msa1169050:CDS
CAACTGGTTGTCTGCAAATC+GGG 0.370008 7_4:-61994237 None:intergenic
TCAACTGGTTGTCTGCAAAT+CGG 0.372927 7_4:-61994238 None:intergenic
TGGATCCTGCTTGGGTTTCT+CGG 0.382151 7_4:+61989550 Msa1169050:CDS
AAGGAAGAAAGGAATAATAA+TGG 0.383520 7_4:-61989149 None:intergenic
TTAGGGTACGGTGCGGCACC+AGG 0.386472 7_4:-61989447 None:intergenic
ACTTCTGTCCAAGACCTTGC+TGG 0.386692 7_4:-61993515 None:intergenic
GCTTGAGTTATCTGAGAGTT+TGG 0.387330 7_4:-61993693 None:intergenic
TATGAGCTGCAGGAGATATA+TGG 0.402009 7_4:+61993789 Msa1169050:CDS
CCTTTGATGCTGCCGTATCT+GGG 0.410660 7_4:+61989724 Msa1169050:CDS
TGGTGGTGGGTGAGTCCGTC+GGG 0.414867 7_4:-61989373 None:intergenic
ATCTCCAAAAGCCTTTCAAC+TGG 0.415200 7_4:-61994253 None:intergenic
GAAAAGGAATAATATTGAAT+CGG 0.418095 7_4:-61989220 None:intergenic
AATAATTTATTAAAATAGAA+AGG 0.418899 7_4:-61989168 None:intergenic
GGTTGTGGTGTTACCGGAGG+TGG 0.426707 7_4:-61989396 None:intergenic
AATAATGGAATATAGAAATA+GGG 0.432895 7_4:-61989134 None:intergenic
GCCTCATCATCATCCTCATA+TGG 0.433411 7_4:+61989530 Msa1169050:CDS
GGAGTCAGATTTAGTAAAGG+TGG 0.440813 7_4:+61993581 Msa1169050:CDS
TGTTCACCCCTGCCGACATA+TGG 0.446468 7_4:+61993899 Msa1169050:CDS
ATTACCCATTGATAGATAGA+TGG 0.446614 7_4:-61989304 None:intergenic
TTACCGGAGGTGGTGGTGGT+GGG 0.450767 7_4:-61989386 None:intergenic
GATCGTTGCTGCATAGGTTA+TGG 0.451609 7_4:-61989259 None:intergenic
GTGGTGGTGGGTGAGTCCGT+CGG 0.453546 7_4:-61989374 None:intergenic
CTTGGTCTAAAATCAGCTAT+AGG 0.457520 7_4:+61994465 Msa1169050:three_prime_UTR
TTTAGACAGCAAGCTGGAAC+TGG 0.459183 7_4:+61993537 Msa1169050:CDS
GATAATGCATGGGTGGGTTA+GGG 0.461186 7_4:-61989464 None:intergenic
TCACCTGATGAGGAAAATCC+TGG 0.463626 7_4:+61989681 Msa1169050:CDS
ATCCTCATATGGATCCTGCT+TGG 0.463662 7_4:+61989541 Msa1169050:CDS
GCGGTGTTTGAGAAGGAAAA+AGG 0.465111 7_4:+61993714 Msa1169050:CDS
ATTAAAATAGAAAGGAAGAA+AGG 0.465413 7_4:-61989160 None:intergenic
TGTGGTGTTACCGGAGGTGG+TGG 0.469980 7_4:-61989393 None:intergenic
TGAAAATACCAGAATAAATG+AGG 0.476423 7_4:-61994400 None:intergenic
CTGCAGGAGATATATGGTAT+TGG 0.477865 7_4:+61993795 Msa1169050:CDS
GTACAATTCCAGCAAGGTCT+TGG 0.478019 7_4:+61993507 Msa1169050:CDS
AAAAGGAATAATATTGAATC+GGG 0.483382 7_4:-61989219 None:intergenic
GGTGTTACCGGAGGTGGTGG+TGG 0.484755 7_4:-61989390 None:intergenic
TGAGGTGCGATTTCGGGTTG+TGG 0.485233 7_4:-61989411 None:intergenic
TTCTTTGCAAAAGAAGATGA+AGG 0.485414 7_4:+61993438 Msa1169050:CDS
TGGGTGAGTCCGTCGGGAAG+CGG 0.486665 7_4:-61989367 None:intergenic
AAATGATGTTAATATTAAGA+AGG 0.487123 7_4:+61989644 Msa1169050:CDS
TGAATATACCATATGTCGGC+AGG 0.487759 7_4:-61993907 None:intergenic
GGAGATAAAGGTAGGGACTG+AGG 0.488255 7_4:+61994270 Msa1169050:CDS
AAATCGGGCATCTATTTGTC+TGG 0.489041 7_4:-61994222 None:intergenic
TTATTACAGTTGGACTGTAC+AGG 0.489581 7_4:-61994327 None:intergenic
CCCAGATACGGCAGCATCAA+AGG 0.490547 7_4:-61989724 None:intergenic
TTCTGTTGGGATGATGATGG+TGG 0.493481 7_4:-61989107 None:intergenic
TACAGTCACAGGTGCAAGAT+GGG 0.494387 7_4:-61993487 None:intergenic
GCTTTCTGATGCTCAACAAA+AGG 0.497062 7_4:-61989609 None:intergenic
TCACCCACCACCACCACCTC+CGG 0.498207 7_4:+61989383 Msa1169050:CDS
AAGCAGATCTTGTCGGTGAA+TGG 0.499467 7_4:+61993759 Msa1169050:CDS
TCGACGACGGTTGTGTCCGC+CGG 0.500495 7_4:-61989337 None:intergenic
TGAGGAGTCAGATTTAGTAA+AGG 0.513325 7_4:+61993578 Msa1169050:CDS
CAAAGTATAATTATTACAGT+TGG 0.516174 7_4:-61994337 None:intergenic
AAAAGTGCTTAATTCATCAA+TGG 0.517205 7_4:+61989044 Msa1169050:five_prime_UTR
TGATGCTCAACAAAAGGTGC+AGG 0.520299 7_4:-61989603 None:intergenic
TCTGTTGGGATGATGATGGT+GGG 0.523242 7_4:-61989106 None:intergenic
AGTTGTTAAGCAGATCTTGT+CGG 0.530254 7_4:+61993752 Msa1169050:CDS
TAACCAGGGTAATGATATTG+AGG 0.535672 7_4:-61989486 None:intergenic
GCATCATCCGGTAATCATGA+TGG 0.536466 7_4:+61993642 Msa1169050:CDS
ACCCAAGCAGGATCCATATG+AGG 0.538916 7_4:-61989543 None:intergenic
TGGAATGCGGTATGAGCTGC+AGG 0.539501 7_4:+61993779 Msa1169050:CDS
TTTGCAGACAACCAGTTGAA+AGG 0.542468 7_4:+61994242 Msa1169050:CDS
GAGTCAGATTTAGTAAAGGT+GGG 0.543543 7_4:+61993582 Msa1169050:CDS
CATTGTAATTTCACCTGATG+AGG 0.545895 7_4:+61989671 Msa1169050:CDS
GTTTCTCGGTACTACCCTTG+TGG 0.547007 7_4:+61989564 Msa1169050:CDS
GAAAACTAACCTCCCAGATA+CGG 0.551062 7_4:-61989736 None:intergenic
GCAAGATGGGTTACCTTGGT+CGG 0.553514 7_4:-61993474 None:intergenic
GTGAAGGCAGATGCATCATC+CGG 0.554451 7_4:+61993630 Msa1169050:CDS
TTTAGTAAAGGTGGGTGACA+TGG 0.558071 7_4:+61993590 Msa1169050:CDS
TGCTGGAATTGTACAGTCAC+AGG 0.558091 7_4:-61993498 None:intergenic
GCATCTGCCTTCACTGCTAG+AGG 0.560301 7_4:-61993621 None:intergenic
TGAGGATGATGATGAGGCAT+AGG 0.565184 7_4:-61989525 None:intergenic
AACTCAAGCGGTGTTTGAGA+AGG 0.567507 7_4:+61993707 Msa1169050:CDS
TGCATGGGTGGGTTAGGGTA+CGG 0.569196 7_4:-61989459 None:intergenic
AAGCGGTGGCGTGTCGACGA+CGG 0.569497 7_4:-61989350 None:intergenic
TGATGATGAGGCATAGGTAT+TGG 0.570267 7_4:-61989519 None:intergenic
TGATTCACCACGGGTCCACA+AGG 0.574272 7_4:-61989579 None:intergenic
ATGGGTAATATCTCAAGCAC+CGG 0.578879 7_4:+61989318 Msa1169050:CDS
ATTGGTGGTGGATAATAACC+AGG 0.584398 7_4:-61989501 None:intergenic
TGTTTACCCTCTAGCAGTGA+AGG 0.588610 7_4:+61993614 Msa1169050:CDS
TGATGAGGCATAGGTATTGG+TGG 0.589183 7_4:-61989516 None:intergenic
GAATATACCATATGTCGGCA+GGG 0.589767 7_4:-61993906 None:intergenic
GTACTACCCTTGTGGACCCG+TGG 0.593118 7_4:+61989572 Msa1169050:CDS
CATCAAAGGTAAACGAAACA+AGG 0.594203 7_4:-61989710 None:intergenic
GTGAGTCCGTCGGGAAGCGG+TGG 0.599821 7_4:-61989364 None:intergenic
CTCATCAGGTGAAATTACAA+TGG 0.602365 7_4:-61989670 None:intergenic
CCTCATCAATTCGTTTACCC+TGG 0.603106 7_4:+61989429 Msa1169050:CDS
TCCATATGAGGATGATGATG+AGG 0.604041 7_4:-61989531 None:intergenic
CTGCATCCTCACACCGACCA+AGG 0.607910 7_4:+61993461 Msa1169050:CDS
TATCCTCAATATCATTACCC+TGG 0.611148 7_4:+61989483 Msa1169050:CDS
GACACGCCACCGCTTCCCGA+CGG 0.612325 7_4:+61989358 Msa1169050:CDS
CAGAAGTTTAGACAGCAAGC+TGG 0.612738 7_4:+61993531 Msa1169050:CDS
GGTGGAATTTATATGACACT+TGG 0.616058 7_4:+61994447 Msa1169050:three_prime_UTR
GTACAGTCACAGGTGCAAGA+TGG 0.616443 7_4:-61993488 None:intergenic
AATGATGATCGTTGCTGCAT+AGG 0.617132 7_4:-61989265 None:intergenic
GAAAATACCAGAATAAATGA+GGG 0.619393 7_4:-61994399 None:intergenic
TCGGGTTGTGGTGTTACCGG+AGG 0.619613 7_4:-61989399 None:intergenic
AATATACCATATGTCGGCAG+GGG 0.619940 7_4:-61993905 None:intergenic
ATGCTGAATATACCATATGT+CGG 0.621925 7_4:-61993911 None:intergenic
ATATGGTATTGGAAATTCAG+TGG 0.622521 7_4:+61993806 Msa1169050:CDS
GGTAATATCTCAAGCACCGG+CGG 0.625709 7_4:+61989321 Msa1169050:CDS
GATGATGGTGGGTATAATGG+AGG 0.628710 7_4:-61989095 None:intergenic
GGTGCAGGTTGATTCACCAC+GGG 0.630188 7_4:-61989588 None:intergenic
CATCTGCCTTCACTGCTAGA+GGG 0.633223 7_4:-61993620 None:intergenic
AGGTGCAAGATGGGTTACCT+TGG 0.637199 7_4:-61993478 None:intergenic
TATTGAGGATAATGCATGGG+TGG 0.640046 7_4:-61989471 None:intergenic
TAGTACCGAGAAACCCAAGC+AGG 0.641166 7_4:-61989555 None:intergenic
TGATATTGAGGATAATGCAT+GGG 0.642567 7_4:-61989474 None:intergenic
AAACTCTCAGATAACTCAAG+CGG 0.648497 7_4:+61993695 Msa1169050:CDS
TGAGGCATAGGTATTGGTGG+TGG 0.650004 7_4:-61989513 None:intergenic
ATGATATTGAGGATAATGCA+TGG 0.652411 7_4:-61989475 None:intergenic
CCAGGGTAAACGAATTGATG+AGG 0.654862 7_4:-61989429 None:intergenic
ATTGAGGATAATGCATGGGT+GGG 0.663150 7_4:-61989470 None:intergenic
GGGTGAACAATTGTGTCGCG+AGG 0.663631 7_4:-61993885 None:intergenic
GGGTTACCTTGGTCGGTGTG+AGG 0.665482 7_4:-61993467 None:intergenic
AGGTGCAGGTTGATTCACCA+CGG 0.673012 7_4:-61989589 None:intergenic
CATGTGTAGTGGATGTGCAA+AGG 0.675895 7_4:+61994189 Msa1169050:CDS
TTGATGCTGCCGTATCTGGG+AGG 0.677621 7_4:+61989727 Msa1169050:CDS
AAATTCAGTGGAGAGTGATG+TGG 0.682565 7_4:+61993818 Msa1169050:CDS
GGTTGCGTATATTTCAACTG+AGG 0.693278 7_4:-61989074 None:intergenic
GTGACTGTACAATTCCAGCA+AGG 0.698948 7_4:+61993501 Msa1169050:CDS
TCTTGTCGGTGAATGGAATG+CGG 0.716236 7_4:+61993766 Msa1169050:CDS
GGGTGGGTTAGGGTACGGTG+CGG 0.722461 7_4:-61989454 None:intergenic
GATGTGGATGACAATGAACA+AGG 0.723839 7_4:+61993834 Msa1169050:CDS
GATTCACCACGGGTCCACAA+GGG 0.725292 7_4:-61989578 None:intergenic
TTGGTGGTGGATAATAACCA+GGG 0.728249 7_4:-61989500 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTAAAAAAAATAA+AGG + chr7_4:61989020-61989039 Msa1169050:five_prime_UTR 0.0%
!! GTATATATACATAATATAAT+AGG - chr7_4:61991466-61991485 None:intergenic 10.0%
!! AAAAAAAATATAATGAACTT+CGG - chr7_4:61992014-61992033 None:intergenic 10.0%
!!! AATAATGGAATATAGAAATA+GGG - chr7_4:61989137-61989156 None:intergenic 15.0%
!!! TAATAATGGAATATAGAAAT+AGG - chr7_4:61989138-61989157 None:intergenic 15.0%
!! AAATGATGTTAATATTAAGA+AGG + chr7_4:61989644-61989663 Msa1169050:CDS 15.0%
!!! AATGTGTTATTTTAATGTTT+TGG + chr7_4:61989785-61989804 Msa1169050:intron 15.0%
!!! ATGTGTTATTTTAATGTTTT+GGG + chr7_4:61989786-61989805 Msa1169050:intron 15.0%
!!! TGTTTTATAATAAAGTTTAC+AGG + chr7_4:61989850-61989869 Msa1169050:intron 15.0%
!! TTTCTTGAAGAATTTATTAA+TGG + chr7_4:61989949-61989968 Msa1169050:intron 15.0%
!! TAATTTCTATGAGATATTAA+GGG - chr7_4:61990182-61990201 None:intergenic 15.0%
!! TTAATATCTCATAGAAATTA+GGG + chr7_4:61990182-61990201 Msa1169050:intron 15.0%
!!! AGTTTATTTTTCTTGATTAA+AGG + chr7_4:61991163-61991182 Msa1169050:intron 15.0%
!!! GTTTATTTTTCTTGATTAAA+GGG + chr7_4:61991164-61991183 Msa1169050:intron 15.0%
!!! TTTATTTTTCTTGATTAAAG+GGG + chr7_4:61991165-61991184 Msa1169050:intron 15.0%
!! AAGATACATATATATATGAA+AGG - chr7_4:61991249-61991268 None:intergenic 15.0%
!!! AAATTGTACTTTTATAATGA+AGG - chr7_4:61991339-61991358 None:intergenic 15.0%
!!! GGTCTTATAAAAAAATTAAT+TGG + chr7_4:61991715-61991734 Msa1169050:intron 15.0%
!! GCAAAGAATTAATAATAAAT+TGG - chr7_4:61991741-61991760 None:intergenic 15.0%
!! ACAAATTAGTAGTATTAATT+AGG + chr7_4:61992226-61992245 Msa1169050:intron 15.0%
!! CAAATTAGTAGTATTAATTA+GGG + chr7_4:61992227-61992246 Msa1169050:intron 15.0%
!! AAATTAGTAGTATTAATTAG+GGG + chr7_4:61992228-61992247 Msa1169050:intron 15.0%
!! TAAAATCATAATGATGATTA+TGG + chr7_4:61993342-61993361 Msa1169050:intron 15.0%
!! ATTAAAATAGAAAGGAAGAA+AGG - chr7_4:61989163-61989182 None:intergenic 20.0%
!! AAAAGGAATAATATTGAATC+GGG - chr7_4:61989222-61989241 None:intergenic 20.0%
!! GAAAAGGAATAATATTGAAT+CGG - chr7_4:61989223-61989242 None:intergenic 20.0%
!!! GGGTATTTATTTTTCTTTTA+TGG + chr7_4:61989806-61989825 Msa1169050:intron 20.0%
!! TAAATTCTTCAAGAAACATT+TGG - chr7_4:61989945-61989964 None:intergenic 20.0%
!!! TTGTATGTTTTGTTTAAGAA+TGG + chr7_4:61990012-61990031 Msa1169050:intron 20.0%
!! CTAATTTCTATGAGATATTA+AGG - chr7_4:61990183-61990202 None:intergenic 20.0%
!! CTTAATATCTCATAGAAATT+AGG + chr7_4:61990181-61990200 Msa1169050:intron 20.0%
!!! TTATTTTTCTTGATTAAAGG+GGG + chr7_4:61991166-61991185 Msa1169050:intron 20.0%
!!! TTTAAAATAGGGTTAATTCA+GGG - chr7_4:61991677-61991696 None:intergenic 20.0%
!!! ATTTAAAATAGGGTTAATTC+AGG - chr7_4:61991678-61991697 None:intergenic 20.0%
!! TTTATTACACATACAAACAA+AGG - chr7_4:61992185-61992204 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr7_4:61992310-61992329 Msa1169050:intron 20.0%
!! TACACAAAAATAGCAAAATA+CGG - chr7_4:61992393-61992412 None:intergenic 20.0%
!!! TTTTTTGAAGCACTTATATT+TGG - chr7_4:61992861-61992880 None:intergenic 20.0%
!!! TTCTTTTGCAAAGAAAAATA+TGG - chr7_4:61993433-61993452 None:intergenic 20.0%
!!! TATTAACTTTTCAATGTTTG+AGG + chr7_4:61993560-61993579 Msa1169050:CDS 20.0%
!! CGAAAAATTTCATTCAAAAA+AGG - chr7_4:61993937-61993956 None:intergenic 20.0%
!!! TTTGAAACAATTTCAGTTTT+AGG + chr7_4:61994060-61994079 Msa1169050:intron 20.0%
!!! TAATTTTCAGCAGTTAAATT+TGG - chr7_4:61994112-61994131 None:intergenic 20.0%
!! CAAAGTATAATTATTACAGT+TGG - chr7_4:61994340-61994359 None:intergenic 20.0%
!! TAAAAAATGAAAAGAAAGCA+GGG - chr7_4:61994371-61994390 None:intergenic 20.0%
!! ATAAAAAATGAAAAGAAAGC+AGG - chr7_4:61994372-61994391 None:intergenic 20.0%
!!! TGCTTTCTTTTCATTTTTTA+TGG + chr7_4:61994371-61994390 Msa1169050:three_prime_UTR 20.0%
!!! AAAAGTGCTTAATTCATCAA+TGG + chr7_4:61989044-61989063 Msa1169050:five_prime_UTR 25.0%
! AAGGAAGAAAGGAATAATAA+TGG - chr7_4:61989152-61989171 None:intergenic 25.0%
! ACGATCATCATTTCAAAATT+AGG + chr7_4:61989276-61989295 Msa1169050:five_prime_UTR 25.0%
! CGATCATCATTTCAAAATTA+GGG + chr7_4:61989277-61989296 Msa1169050:five_prime_UTR 25.0%
!! TTTTCCATCTATCTATCAAT+GGG + chr7_4:61989300-61989319 Msa1169050:exon 25.0%
!!! ATGTTTTGTTTAAGAATGGA+TGG + chr7_4:61990016-61990035 Msa1169050:intron 25.0%
!!! TGTTTTGTTTAAGAATGGAT+GGG + chr7_4:61990017-61990036 Msa1169050:intron 25.0%
!!! CATTACGAACTGATTTTATA+GGG - chr7_4:61990223-61990242 None:intergenic 25.0%
!!! ACATTACGAACTGATTTTAT+AGG - chr7_4:61990224-61990243 None:intergenic 25.0%
! TCATTCAAATTGTCGTAATT+GGG - chr7_4:61990427-61990446 None:intergenic 25.0%
! TGAATGACAAAAGATATTGT+TGG + chr7_4:61990440-61990459 Msa1169050:intron 25.0%
! CAAAATAGAGACTACAATTA+AGG - chr7_4:61990474-61990493 None:intergenic 25.0%
!! CTTAATTGTAGTCTCTATTT+TGG + chr7_4:61990472-61990491 Msa1169050:intron 25.0%
! CATCCTGATTACTAAAAATA+TGG + chr7_4:61990535-61990554 Msa1169050:intron 25.0%
!!! TAGCCATATTTTTAGTAATC+AGG - chr7_4:61990541-61990560 None:intergenic 25.0%
! TAAAAATATGGCTAAGTAGT+AGG + chr7_4:61990547-61990566 Msa1169050:intron 25.0%
! ACTCTGTTGAACTTATAATA+CGG + chr7_4:61990848-61990867 Msa1169050:intron 25.0%
! ATATGAAAGGAAACAAAACA+AGG - chr7_4:61991236-61991255 None:intergenic 25.0%
! TTATAAATGCTCACAATGTT+CGG - chr7_4:61991277-61991296 None:intergenic 25.0%
! ACATTGTGAGCATTTATAAT+TGG + chr7_4:61991278-61991297 Msa1169050:intron 25.0%
! TTTATAATGAAGGAGGATAT+TGG - chr7_4:61991329-61991348 None:intergenic 25.0%
!! TTGTACTTTTATAATGAAGG+AGG - chr7_4:61991336-61991355 None:intergenic 25.0%
!!! AGTATAATGAACTTTTTGGT+GGG - chr7_4:61992056-61992075 None:intergenic 25.0%
! AGAAATGTGAAAAAAGCAAA+GGG - chr7_4:61992102-61992121 None:intergenic 25.0%
! AAGAAATGTGAAAAAAGCAA+AGG - chr7_4:61992103-61992122 None:intergenic 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr7_4:61992238-61992257 Msa1169050:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr7_4:61992274-61992293 Msa1169050:intron 25.0%
! TTGAAAAGGAGTTTACATTT+AGG + chr7_4:61992288-61992307 Msa1169050:intron 25.0%
! TGAAAAGGAGTTTACATTTA+GGG + chr7_4:61992289-61992308 Msa1169050:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr7_4:61992309-61992328 Msa1169050:intron 25.0%
! AGCAAAATACGGAAAATTAA+AGG - chr7_4:61992382-61992401 None:intergenic 25.0%
! ATGTTGTTAATCTCATATAG+CGG - chr7_4:61992524-61992543 None:intergenic 25.0%
! ATTATAGACAAAATATGACG+AGG - chr7_4:61992664-61992683 None:intergenic 25.0%
! CTTAATCGGTAATGTATATT+AGG - chr7_4:61993099-61993118 None:intergenic 25.0%
! TGCTCTTAAGTTTACTTAAT+CGG - chr7_4:61993113-61993132 None:intergenic 25.0%
! TACATAATACTCCTTGATAT+GGG - chr7_4:61993223-61993242 None:intergenic 25.0%
! TTACATAATACTCCTTGATA+TGG - chr7_4:61993224-61993243 None:intergenic 25.0%
! ATCAATATTATGACCAATCT+TGG + chr7_4:61994001-61994020 Msa1169050:intron 25.0%
! AATAAGATATTTGCCAAGAT+TGG - chr7_4:61994017-61994036 None:intergenic 25.0%
! ACTGAAATTGTTTCAAAAGA+AGG - chr7_4:61994057-61994076 None:intergenic 25.0%
! ACTGCTGAAAATTACTTATT+TGG + chr7_4:61994118-61994137 Msa1169050:intron 25.0%
! AAAAAATGAAAAGAAAGCAG+GGG - chr7_4:61994370-61994389 None:intergenic 25.0%
! GAAAATACCAGAATAAATGA+GGG - chr7_4:61994402-61994421 None:intergenic 25.0%
! TGAAAATACCAGAATAAATG+AGG - chr7_4:61994403-61994422 None:intergenic 25.0%
!! TTATTCTGGTATTTTCAATG+AGG + chr7_4:61994406-61994425 Msa1169050:three_prime_UTR 25.0%
!! TATTCTGGTATTTTCAATGA+GGG + chr7_4:61994407-61994426 Msa1169050:three_prime_UTR 25.0%
!!! GAAATAGGGTTTTTTCTGTT+GGG - chr7_4:61989123-61989142 None:intergenic 30.0%
!!! AGAAATAGGGTTTTTTCTGT+TGG - chr7_4:61989124-61989143 None:intergenic 30.0%
! GTTTTCCATCTATCTATCAA+TGG + chr7_4:61989299-61989318 Msa1169050:exon 30.0%
ATTACCCATTGATAGATAGA+TGG - chr7_4:61989307-61989326 None:intergenic 30.0%
TGATATTGAGGATAATGCAT+GGG - chr7_4:61989477-61989496 None:intergenic 30.0%
ATGATATTGAGGATAATGCA+TGG - chr7_4:61989478-61989497 None:intergenic 30.0%
! AATGGTGTCAAAATAAGAGT+TGG + chr7_4:61989967-61989986 Msa1169050:intron 30.0%
!!! GTTTTGTTTAAGAATGGATG+GGG + chr7_4:61990018-61990037 Msa1169050:intron 30.0%
ATCAAAGATTGTGCTAGTTA+TGG - chr7_4:61990137-61990156 None:intergenic 30.0%
TGAGATATTAAGGGTAGAAA+AGG - chr7_4:61990173-61990192 None:intergenic 30.0%
ATCTCATAGAAATTAGGGTT+AGG + chr7_4:61990187-61990206 Msa1169050:intron 30.0%
TCTCATAGAAATTAGGGTTA+GGG + chr7_4:61990188-61990207 Msa1169050:intron 30.0%
! CTGATTTTATAGGGTTTAGT+GGG - chr7_4:61990214-61990233 None:intergenic 30.0%
!! ACTGATTTTATAGGGTTTAG+TGG - chr7_4:61990215-61990234 None:intergenic 30.0%
TAAAATCAGTTCGTAATGTG+AGG + chr7_4:61990225-61990244 Msa1169050:intron 30.0%
GTCATTCAAATTGTCGTAAT+TGG - chr7_4:61990428-61990447 None:intergenic 30.0%
AATAGAGACTACAATTAAGG+AGG - chr7_4:61990471-61990490 None:intergenic 30.0%
!! ATTTTGGCAAATAGAACCAT+TGG + chr7_4:61990488-61990507 Msa1169050:intron 30.0%
ATTCAGAGTTTACATAGACA+TGG - chr7_4:61990670-61990689 None:intergenic 30.0%
CGTGTTTATGTTTCAAAGTA+AGG + chr7_4:61990789-61990808 Msa1169050:intron 30.0%
! TTCCATTCAATTAGCTTACT+TGG - chr7_4:61990915-61990934 None:intergenic 30.0%
AGTAAGCTAATTGAATGGAA+AGG + chr7_4:61990915-61990934 Msa1169050:intron 30.0%
CACTAAAAAGTCTAAGTGAA+AGG + chr7_4:61990958-61990977 Msa1169050:intron 30.0%
AAGTAGCGTTTGTATTAAGT+TGG + chr7_4:61991067-61991086 Msa1169050:intron 30.0%
! AAAACAAGGTAGAACCTTTT+CGG - chr7_4:61991222-61991241 None:intergenic 30.0%
AAGCTCTCTAACATAGAAAA+CGG + chr7_4:61991367-61991386 Msa1169050:intron 30.0%
!! TTTTGCTGCTTACTTTATCA+AGG + chr7_4:61991419-61991438 Msa1169050:intron 30.0%
ACACTAAAAAGATCTATAGC+TGG - chr7_4:61991488-61991507 None:intergenic 30.0%
! ATTCTTTGCAAACACGTTTT+AGG + chr7_4:61991752-61991771 Msa1169050:intron 30.0%
! GAGTATAATGAACTTTTTGG+TGG - chr7_4:61992057-61992076 None:intergenic 30.0%
!! AGGGAGTATAATGAACTTTT+TGG - chr7_4:61992060-61992079 None:intergenic 30.0%
AAATGTGAAAAAAGCAAAGG+GGG - chr7_4:61992100-61992119 None:intergenic 30.0%
GAAATGTGAAAAAAGCAAAG+GGG - chr7_4:61992101-61992120 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - chr7_4:61992176-61992195 None:intergenic 30.0%
TCAAATGGGTGTTTAGATAT+AGG + chr7_4:61992324-61992343 Msa1169050:intron 30.0%
CAAATGGGTGTTTAGATATA+GGG + chr7_4:61992325-61992344 Msa1169050:intron 30.0%
! CTATACTCTATAGCAGTTTT+GGG + chr7_4:61992482-61992501 Msa1169050:intron 30.0%
! TATACTCTATAGCAGTTTTG+GGG + chr7_4:61992483-61992502 Msa1169050:intron 30.0%
! AACATGTTTTCTGTCAAATG+TGG + chr7_4:61992633-61992652 Msa1169050:intron 30.0%
! ACATGTTTTCTGTCAAATGT+GGG + chr7_4:61992634-61992653 Msa1169050:intron 30.0%
AAAATCCCAAGATTCAACAA+TGG + chr7_4:61992877-61992896 Msa1169050:intron 30.0%
TCATTCCATTGTTGAATCTT+GGG - chr7_4:61992885-61992904 None:intergenic 30.0%
ATCATTCCATTGTTGAATCT+TGG - chr7_4:61992886-61992905 None:intergenic 30.0%
ATCAAATCGATGTTCAAATC+AGG + chr7_4:61993032-61993051 Msa1169050:intron 30.0%
CATAATGATGATTATGGATG+TGG + chr7_4:61993348-61993367 Msa1169050:intron 30.0%
CTTTACTTTAGTTGTTCTGA+AGG + chr7_4:61993375-61993394 Msa1169050:intron 30.0%
TTCTTTGCAAAAGAAGATGA+AGG + chr7_4:61993438-61993457 Msa1169050:CDS 30.0%
! ATATGGTATTGGAAATTCAG+TGG + chr7_4:61993806-61993825 Msa1169050:CDS 30.0%
ATGCTGAATATACCATATGT+CGG - chr7_4:61993914-61993933 None:intergenic 30.0%
AGTTGATTGAATGATACTGA+TGG + chr7_4:61993963-61993982 Msa1169050:intron 30.0%
! ATTCTGGTATTTTCAATGAG+GGG + chr7_4:61994408-61994427 Msa1169050:three_prime_UTR 30.0%
! TTTTTCTGTTGGGATGATGA+TGG - chr7_4:61989113-61989132 None:intergenic 35.0%
! TTTTGTGGAAAGAGCAGAAA+AGG - chr7_4:61989239-61989258 None:intergenic 35.0%
TATCCTCAATATCATTACCC+TGG + chr7_4:61989483-61989502 Msa1169050:CDS 35.0%
TAACCAGGGTAATGATATTG+AGG - chr7_4:61989489-61989508 None:intergenic 35.0%
CTCATCAGGTGAAATTACAA+TGG - chr7_4:61989673-61989692 None:intergenic 35.0%
CATTGTAATTTCACCTGATG+AGG + chr7_4:61989671-61989690 Msa1169050:CDS 35.0%
AACGAAACAAGGAAAAAACC+AGG - chr7_4:61989702-61989721 None:intergenic 35.0%
CATCAAAGGTAAACGAAACA+AGG - chr7_4:61989713-61989732 None:intergenic 35.0%
TGAACTTGATGAACTTGGTA+TGG + chr7_4:61989874-61989893 Msa1169050:intron 35.0%
GTATGGTAGGACAGAATAAT+CGG + chr7_4:61989891-61989910 Msa1169050:intron 35.0%
TGGTTACCTCCAAAATAGTT+TGG + chr7_4:61990062-61990081 Msa1169050:intron 35.0%
! AACAGACTGCCAAACTATTT+TGG - chr7_4:61990074-61990093 None:intergenic 35.0%
! ATAGTTTGGCAGTCTGTTTT+AGG + chr7_4:61990076-61990095 Msa1169050:intron 35.0%
! TAGTTTGGCAGTCTGTTTTA+GGG + chr7_4:61990077-61990096 Msa1169050:intron 35.0%
!! TTAGGGTTTTATGTTGTTCG+CGG + chr7_4:61990094-61990113 Msa1169050:intron 35.0%
TTTATGTTGTTCGCGGTATT+CGG + chr7_4:61990101-61990120 Msa1169050:intron 35.0%
TAGCTAGAGTTTACGACTTT+AGG + chr7_4:61990615-61990634 Msa1169050:intron 35.0%
GAGTTTACATAGACATGGTT+TGG - chr7_4:61990665-61990684 None:intergenic 35.0%
TGATTCTGTGCAAATCTATG+AGG - chr7_4:61990701-61990720 None:intergenic 35.0%
TAGATTTGCACAGAATCACA+TGG + chr7_4:61990703-61990722 Msa1169050:intron 35.0%
TTGAGGATGATTTGAATGCA+TGG + chr7_4:61990726-61990745 Msa1169050:intron 35.0%
!! AGCGTTTGTATTAAGTTGGT+TGG + chr7_4:61991071-61991090 Msa1169050:intron 35.0%
TATGTTAGAGAGCTTCAAAG+TGG - chr7_4:61991362-61991381 None:intergenic 35.0%
GCTTACTTTATCAAGGTAGT+TGG + chr7_4:61991426-61991445 Msa1169050:intron 35.0%
TTAAAGAGTTGTGGCTATCA+TGG + chr7_4:61991581-61991600 Msa1169050:intron 35.0%
GTTAATTCAGGGATTTCAGT+TGG - chr7_4:61991666-61991685 None:intergenic 35.0%
!! ACCCTATTTTAAATGCTGTC+TGG + chr7_4:61991684-61991703 Msa1169050:intron 35.0%
! CCCAGACAGCATTTAAAATA+GGG - chr7_4:61991688-61991707 None:intergenic 35.0%
!! CCCTATTTTAAATGCTGTCT+GGG + chr7_4:61991685-61991704 Msa1169050:intron 35.0%
!! CCTATTTTAAATGCTGTCTG+GGG + chr7_4:61991686-61991705 Msa1169050:intron 35.0%
!!! CGACGTTCATTTTTTTCCTT+TGG + chr7_4:61991858-61991877 Msa1169050:intron 35.0%
AATGTGAAAAAAGCAAAGGG+GGG - chr7_4:61992099-61992118 None:intergenic 35.0%
! GCTATACTCTATAGCAGTTT+TGG + chr7_4:61992481-61992500 Msa1169050:intron 35.0%
TGAGAGTCTACATAATTGCA+CGG - chr7_4:61992780-61992799 None:intergenic 35.0%
! ACTCTCAAGTTTTACAATCC+TGG + chr7_4:61992793-61992812 Msa1169050:intron 35.0%
TCTTGTAGACTTATTCTACC+AGG - chr7_4:61992814-61992833 None:intergenic 35.0%
GCACTTATATTTGGCATGTA+TGG - chr7_4:61992852-61992871 None:intergenic 35.0%
ATGGAATGATAAGTCTGTGT+AGG + chr7_4:61992896-61992915 Msa1169050:intron 35.0%
TGGAATGATAAGTCTGTGTA+GGG + chr7_4:61992897-61992916 Msa1169050:intron 35.0%
TGATGTTGTATTGAGTCTTG+TGG + chr7_4:61993007-61993026 Msa1169050:intron 35.0%
CTAATTTCTAAACCGTGAGT+CGG + chr7_4:61993066-61993085 Msa1169050:intron 35.0%
TACACAAGTGAGTGTTTACT+TGG + chr7_4:61993150-61993169 Msa1169050:intron 35.0%
ACACAAGTGAGTGTTTACTT+GGG + chr7_4:61993151-61993170 Msa1169050:intron 35.0%
! AAGTGACAGCTTTAGTTACA+AGG + chr7_4:61993178-61993197 Msa1169050:intron 35.0%
!! TCAAGGAGTATTATGTAAGC+TGG + chr7_4:61993226-61993245 Msa1169050:intron 35.0%
TTATGACAATCACTCACACA+TGG - chr7_4:61993325-61993344 None:intergenic 35.0%
TGAGGAGTCAGATTTAGTAA+AGG + chr7_4:61993578-61993597 Msa1169050:CDS 35.0%
GAGTCAGATTTAGTAAAGGT+GGG + chr7_4:61993582-61993601 Msa1169050:CDS 35.0%
ATCTGATCCATCATGATTAC+CGG - chr7_4:61993652-61993671 None:intergenic 35.0%
AAACTCTCAGATAACTCAAG+CGG + chr7_4:61993695-61993714 Msa1169050:CDS 35.0%
AGAAGGAAAAAGGAGAATTC+CGG + chr7_4:61993724-61993743 Msa1169050:CDS 35.0%
! TCTGCTTAACAACTTTTACC+CGG - chr7_4:61993746-61993765 None:intergenic 35.0%
AGTTGTTAAGCAGATCTTGT+CGG + chr7_4:61993752-61993771 Msa1169050:CDS 35.0%
AATTCAGCCAAAGTATGTCA+CGG - chr7_4:61994151-61994170 None:intergenic 35.0%
!! TGAAAGGCTTTTGGAGATAA+AGG + chr7_4:61994258-61994277 Msa1169050:CDS 35.0%
TTATTACAGTTGGACTGTAC+AGG - chr7_4:61994330-61994349 None:intergenic 35.0%
ATGAGGGGAAAAAATAGAGA+AGG + chr7_4:61994423-61994442 Msa1169050:three_prime_UTR 35.0%
TGAGGGGAAAAAATAGAGAA+GGG + chr7_4:61994424-61994443 Msa1169050:three_prime_UTR 35.0%
GGTGGAATTTATATGACACT+TGG + chr7_4:61994447-61994466 Msa1169050:three_prime_UTR 35.0%
! CTTGGTCTAAAATCAGCTAT+AGG + chr7_4:61994465-61994484 Msa1169050:three_prime_UTR 35.0%
GGTTGCGTATATTTCAACTG+AGG - chr7_4:61989077-61989096 None:intergenic 40.0%
!! GATGATGATGGTGGGTATAA+TGG - chr7_4:61989101-61989120 None:intergenic 40.0%
!! CTGCATAGGTTATGGTTTTG+TGG - chr7_4:61989254-61989273 None:intergenic 40.0%
AATGATGATCGTTGCTGCAT+AGG - chr7_4:61989268-61989287 None:intergenic 40.0%
ATGGGTAATATCTCAAGCAC+CGG + chr7_4:61989318-61989337 Msa1169050:CDS 40.0%
AATTGATGAGGTGCGATTTC+GGG - chr7_4:61989420-61989439 None:intergenic 40.0%
GAATTGATGAGGTGCGATTT+CGG - chr7_4:61989421-61989440 None:intergenic 40.0%
ATTGAGGATAATGCATGGGT+GGG - chr7_4:61989473-61989492 None:intergenic 40.0%
TATTGAGGATAATGCATGGG+TGG - chr7_4:61989474-61989493 None:intergenic 40.0%
!! TTGGTGGTGGATAATAACCA+GGG - chr7_4:61989503-61989522 None:intergenic 40.0%
!! ATTGGTGGTGGATAATAACC+AGG - chr7_4:61989504-61989523 None:intergenic 40.0%
! TGATGATGAGGCATAGGTAT+TGG - chr7_4:61989522-61989541 None:intergenic 40.0%
! TCCATATGAGGATGATGATG+AGG - chr7_4:61989534-61989553 None:intergenic 40.0%
GCTTTCTGATGCTCAACAAA+AGG - chr7_4:61989612-61989631 None:intergenic 40.0%
! AAACCAGGATTTTCCTCATC+AGG - chr7_4:61989687-61989706 None:intergenic 40.0%
GAAAACTAACCTCCCAGATA+CGG - chr7_4:61989739-61989758 None:intergenic 40.0%
! CAGGTTGAACTTGATGAACT+TGG + chr7_4:61989869-61989888 Msa1169050:intron 40.0%
CTTGATGAACTTGGTATGGT+AGG + chr7_4:61989878-61989897 Msa1169050:intron 40.0%
TTGTTTAAGAATGGATGGGG+AGG + chr7_4:61990021-61990040 Msa1169050:intron 40.0%
GGCATGTTAAAAGGAGAAAG+TGG + chr7_4:61990042-61990061 Msa1169050:intron 40.0%
!! AGACTGCCAAACTATTTTGG+AGG - chr7_4:61990071-61990090 None:intergenic 40.0%
! GGACTGTCTAAGCAAGTTTT+TGG + chr7_4:61990246-61990265 Msa1169050:intron 40.0%
TAGCACGATAGTCTTTCCAA+TGG - chr7_4:61990507-61990526 None:intergenic 40.0%
GGCCAAGTAAGCTAATTGAA+TGG + chr7_4:61990910-61990929 Msa1169050:intron 40.0%
GTGAAAGGTGACTACTAAAG+AGG + chr7_4:61990973-61990992 Msa1169050:intron 40.0%
GTAGCTAAAGGGAGAGAAAA+AGG + chr7_4:61991024-61991043 Msa1169050:intron 40.0%
AGTGAAAGGCGAATTAGGAA+GGG + chr7_4:61991102-61991121 Msa1169050:intron 40.0%
AACTCTTTAATGTGCATCGC+TGG - chr7_4:61991571-61991590 None:intergenic 40.0%
CGATGCACATTAAAGAGTTG+TGG + chr7_4:61991572-61991591 Msa1169050:intron 40.0%
! CCCCAGACAGCATTTAAAAT+AGG - chr7_4:61991689-61991708 None:intergenic 40.0%
! AAATGCTGTCTGGGGTATAT+TGG + chr7_4:61991694-61991713 Msa1169050:intron 40.0%
!! CTTTGCAAACACGTTTTAGG+AGG + chr7_4:61991755-61991774 Msa1169050:intron 40.0%
TCCTTTCTTTCTATGCACGA+AGG + chr7_4:61991911-61991930 Msa1169050:intron 40.0%
TCCTTCGTGCATAGAAAGAA+AGG - chr7_4:61991915-61991934 None:intergenic 40.0%
TGGGTGTTTAGATATAGGGA+CGG + chr7_4:61992329-61992348 Msa1169050:intron 40.0%
TGTTTAGATATAGGGACGGA+GGG + chr7_4:61992333-61992352 Msa1169050:intron 40.0%
TGAAAGTCATCCACAAGTTC+TGG + chr7_4:61992590-61992609 Msa1169050:intron 40.0%
!! CACAAATGCTTCTAAAGTCC+CGG + chr7_4:61992957-61992976 Msa1169050:intron 40.0%
CATTATCCTCCTTCGCATAT+AGG - chr7_4:61992989-61993008 None:intergenic 40.0%
CGACTCACGGTTTAGAAATT+AGG - chr7_4:61993068-61993087 None:intergenic 40.0%
TTAGGATAAGATCCGACTCA+CGG - chr7_4:61993081-61993100 None:intergenic 40.0%
CACAAGTGAGTGTTTACTTG+GGG + chr7_4:61993152-61993171 Msa1169050:intron 40.0%
GGAGTCAGATTTAGTAAAGG+TGG + chr7_4:61993581-61993600 Msa1169050:CDS 40.0%
TTTAGTAAAGGTGGGTGACA+TGG + chr7_4:61993590-61993609 Msa1169050:CDS 40.0%
GCTTGAGTTATCTGAGAGTT+TGG - chr7_4:61993696-61993715 None:intergenic 40.0%
GAAGGAAAAAGGAGAATTCC+GGG + chr7_4:61993725-61993744 Msa1169050:CDS 40.0%
TATGAGCTGCAGGAGATATA+TGG + chr7_4:61993789-61993808 Msa1169050:CDS 40.0%
CTGCAGGAGATATATGGTAT+TGG + chr7_4:61993795-61993814 Msa1169050:CDS 40.0%
AAATTCAGTGGAGAGTGATG+TGG + chr7_4:61993818-61993837 Msa1169050:CDS 40.0%
GATGTGGATGACAATGAACA+AGG + chr7_4:61993834-61993853 Msa1169050:CDS 40.0%
AATATACCATATGTCGGCAG+GGG - chr7_4:61993908-61993927 None:intergenic 40.0%
GAATATACCATATGTCGGCA+GGG - chr7_4:61993909-61993928 None:intergenic 40.0%
TGAATATACCATATGTCGGC+AGG - chr7_4:61993910-61993929 None:intergenic 40.0%
! TTTTTGCAGTGCATGTGTAG+TGG + chr7_4:61994178-61994197 Msa1169050:intron 40.0%
AAATCGGGCATCTATTTGTC+TGG - chr7_4:61994225-61994244 None:intergenic 40.0%
TCAACTGGTTGTCTGCAAAT+CGG - chr7_4:61994241-61994260 None:intergenic 40.0%
TTTGCAGACAACCAGTTGAA+AGG + chr7_4:61994242-61994261 Msa1169050:CDS 40.0%
! ACAACCAGTTGAAAGGCTTT+TGG + chr7_4:61994249-61994268 Msa1169050:CDS 40.0%
ATCTCCAAAAGCCTTTCAAC+TGG - chr7_4:61994256-61994275 None:intergenic 40.0%
!! AGGCTTTTGGAGATAAAGGT+AGG + chr7_4:61994262-61994281 Msa1169050:CDS 40.0%
!! GGCTTTTGGAGATAAAGGTA+GGG + chr7_4:61994263-61994282 Msa1169050:CDS 40.0%
TGGACTGTACAGGAAGTTTA+TGG - chr7_4:61994320-61994339 None:intergenic 40.0%
GGTTTCTCCCTCATTTATTC+TGG + chr7_4:61994392-61994411 Msa1169050:three_prime_UTR 40.0%
GAGGGGAAAAAATAGAGAAG+GGG + chr7_4:61994425-61994444 Msa1169050:three_prime_UTR 40.0%
AGGGGAAAAAATAGAGAAGG+GGG + chr7_4:61994426-61994445 Msa1169050:three_prime_UTR 40.0%
!! GATGATGGTGGGTATAATGG+AGG - chr7_4:61989098-61989117 None:intergenic 45.0%
!! TCTGTTGGGATGATGATGGT+GGG - chr7_4:61989109-61989128 None:intergenic 45.0%
!! TTCTGTTGGGATGATGATGG+TGG - chr7_4:61989110-61989129 None:intergenic 45.0%
GATCGTTGCTGCATAGGTTA+TGG - chr7_4:61989262-61989281 None:intergenic 45.0%
!! ATTTCGGGTTGTGGTGTTAC+CGG - chr7_4:61989405-61989424 None:intergenic 45.0%
CCAGGGTAAACGAATTGATG+AGG - chr7_4:61989432-61989451 None:intergenic 45.0%
CCTCATCAATTCGTTTACCC+TGG + chr7_4:61989429-61989448 Msa1169050:CDS 45.0%
!! GATAATGCATGGGTGGGTTA+GGG - chr7_4:61989467-61989486 None:intergenic 45.0%
!! TGATGAGGCATAGGTATTGG+TGG - chr7_4:61989519-61989538 None:intergenic 45.0%
! TGAGGATGATGATGAGGCAT+AGG - chr7_4:61989528-61989547 None:intergenic 45.0%
GCCTCATCATCATCCTCATA+TGG + chr7_4:61989530-61989549 Msa1169050:CDS 45.0%
ATCCTCATATGGATCCTGCT+TGG + chr7_4:61989541-61989560 Msa1169050:CDS 45.0%
TCCTCATATGGATCCTGCTT+GGG + chr7_4:61989542-61989561 Msa1169050:CDS 45.0%
! TGATGCTCAACAAAAGGTGC+AGG - chr7_4:61989606-61989625 None:intergenic 45.0%
TCACCTGATGAGGAAAATCC+TGG + chr7_4:61989681-61989700 Msa1169050:CDS 45.0%
!!! GCAAGTTTTTGGAACTGCAC+CGG + chr7_4:61990257-61990276 Msa1169050:intron 45.0%
TGCACAGAATCACATGGTTG+AGG + chr7_4:61990709-61990728 Msa1169050:intron 45.0%
GGTGACTACTAAAGAGGAAG+AGG + chr7_4:61990979-61990998 Msa1169050:intron 45.0%
GACTACTAAAGAGGAAGAGG+TGG + chr7_4:61990982-61991001 Msa1169050:intron 45.0%
AAGAGGTGGAGAGTAAGAAG+TGG + chr7_4:61990996-61991015 Msa1169050:intron 45.0%
TGGAGAGTAAGAAGTGGAGA+GGG + chr7_4:61991002-61991021 Msa1169050:intron 45.0%
AAGTGGAGAGGGTAGCTAAA+GGG + chr7_4:61991013-61991032 Msa1169050:intron 45.0%
GTTGCAGTGAAAGGCGAATT+AGG + chr7_4:61991097-61991116 Msa1169050:intron 45.0%
CAGTGAAAGGCGAATTAGGA+AGG + chr7_4:61991101-61991120 Msa1169050:intron 45.0%
AAAGGCGAATTAGGAAGGGA+TGG + chr7_4:61991106-61991125 Msa1169050:intron 45.0%
AAGGCGAATTAGGAAGGGAT+GGG + chr7_4:61991107-61991126 Msa1169050:intron 45.0%
TAGTGAGATTGCGTGTGAGT+TGG + chr7_4:61991195-61991214 Msa1169050:intron 45.0%
AGTGAGATTGCGTGTGAGTT+GGG + chr7_4:61991196-61991215 Msa1169050:intron 45.0%
CATGATTTCGCTGCTATGTG+CGG - chr7_4:61991607-61991626 None:intergenic 45.0%
ATAGTTTCGCAGGCGCTATT+AGG + chr7_4:61991636-61991655 Msa1169050:intron 45.0%
TAGTTTCGCAGGCGCTATTA+GGG + chr7_4:61991637-61991656 Msa1169050:intron 45.0%
TCGTAGCAACAAACAGCAGA+AGG - chr7_4:61991841-61991860 None:intergenic 45.0%
GGAAAGCAACAGAACAGAGA+AGG - chr7_4:61991894-61991913 None:intergenic 45.0%
! AGGATGCTGCTCTGTTTTGT+TGG + chr7_4:61991931-61991950 Msa1169050:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr7_4:61992087-61992106 None:intergenic 45.0%
AGCAAAGGGGGGTTACATTA+AGG - chr7_4:61992088-61992107 None:intergenic 45.0%
GTGTTTAGATATAGGGACGG+AGG + chr7_4:61992332-61992351 Msa1169050:intron 45.0%
GTTAATCTCATATAGCGGCG+TGG - chr7_4:61992519-61992538 None:intergenic 45.0%
! AGTCATCCACAAGTTCTGGT+TGG + chr7_4:61992594-61992613 Msa1169050:intron 45.0%
ATTCAGCCAACCAGAACTTG+TGG - chr7_4:61992603-61992622 None:intergenic 45.0%
ATTCAAGTGCTACAACTGCG+AGG - chr7_4:61992936-61992955 None:intergenic 45.0%
!! CGGGACTTTAGAAGCATTTG+TGG - chr7_4:61992959-61992978 None:intergenic 45.0%
TTCGCATATAGGTTCATGCC+GGG - chr7_4:61992978-61992997 None:intergenic 45.0%
CTTCGCATATAGGTTCATGC+CGG - chr7_4:61992979-61992998 None:intergenic 45.0%
CATGAACCTATATGCGAAGG+AGG + chr7_4:61992980-61992999 Msa1169050:intron 45.0%
CTCTTTGCTCTCCCATATCA+AGG + chr7_4:61993209-61993228 Msa1169050:intron 45.0%
TACAGTCACAGGTGCAAGAT+GGG - chr7_4:61993490-61993509 None:intergenic 45.0%
TGCTGGAATTGTACAGTCAC+AGG - chr7_4:61993501-61993520 None:intergenic 45.0%
GTGACTGTACAATTCCAGCA+AGG + chr7_4:61993501-61993520 Msa1169050:CDS 45.0%
GTACAATTCCAGCAAGGTCT+TGG + chr7_4:61993507-61993526 Msa1169050:CDS 45.0%
CAGAAGTTTAGACAGCAAGC+TGG + chr7_4:61993531-61993550 Msa1169050:CDS 45.0%
TTTAGACAGCAAGCTGGAAC+TGG + chr7_4:61993537-61993556 Msa1169050:CDS 45.0%
TGTTTACCCTCTAGCAGTGA+AGG + chr7_4:61993614-61993633 Msa1169050:CDS 45.0%
GCATCATCCGGTAATCATGA+TGG + chr7_4:61993642-61993661 Msa1169050:CDS 45.0%
AACTCAAGCGGTGTTTGAGA+AGG + chr7_4:61993707-61993726 Msa1169050:CDS 45.0%
GCGGTGTTTGAGAAGGAAAA+AGG + chr7_4:61993714-61993733 Msa1169050:CDS 45.0%
AAGCAGATCTTGTCGGTGAA+TGG + chr7_4:61993759-61993778 Msa1169050:CDS 45.0%
TCTTGTCGGTGAATGGAATG+CGG + chr7_4:61993766-61993785 Msa1169050:CDS 45.0%
!! CATGTGTAGTGGATGTGCAA+AGG + chr7_4:61994189-61994208 Msa1169050:CDS 45.0%
CAACTGGTTGTCTGCAAATC+GGG - chr7_4:61994240-61994259 None:intergenic 45.0%
GGAAAAAATAGAGAAGGGGG+TGG + chr7_4:61994429-61994448 Msa1169050:three_prime_UTR 45.0%
!! AATAATTTATTAAAATAGAA+AGG - chr7_4:61989171-61989190 None:intergenic 5.0%
!! GGTAATATCTCAAGCACCGG+CGG + chr7_4:61989321-61989340 Msa1169050:CDS 50.0%
! GGATAATGCATGGGTGGGTT+AGG - chr7_4:61989468-61989487 None:intergenic 50.0%
!! TGAGGCATAGGTATTGGTGG+TGG - chr7_4:61989516-61989535 None:intergenic 50.0%
ACCCAAGCAGGATCCATATG+AGG - chr7_4:61989546-61989565 None:intergenic 50.0%
TGGATCCTGCTTGGGTTTCT+CGG + chr7_4:61989550-61989569 Msa1169050:CDS 50.0%
! TAGTACCGAGAAACCCAAGC+AGG - chr7_4:61989558-61989577 None:intergenic 50.0%
GTTTCTCGGTACTACCCTTG+TGG + chr7_4:61989564-61989583 Msa1169050:CDS 50.0%
!! AGGTGCAGGTTGATTCACCA+CGG - chr7_4:61989592-61989611 None:intergenic 50.0%
ACCTTTGATGCTGCCGTATC+TGG + chr7_4:61989723-61989742 Msa1169050:CDS 50.0%
CCTTTGATGCTGCCGTATCT+GGG + chr7_4:61989724-61989743 Msa1169050:CDS 50.0%
! GGATGGGGAGGCATGTTAAA+AGG + chr7_4:61990033-61990052 Msa1169050:intron 50.0%
ATGTTGTTCGCGGTATTCGG+AGG + chr7_4:61990104-61990123 Msa1169050:intron 50.0%
TCCTTGACATGTGTCAACGC+CGG - chr7_4:61990279-61990298 None:intergenic 50.0%
TGCCGTATCTCTAGACGAAG+TGG + chr7_4:61990401-61990420 Msa1169050:intron 50.0%
GGCCACTTCGTCTAGAGATA+CGG - chr7_4:61990406-61990425 None:intergenic 50.0%
CGCTCATACTGACGTGCATA+TGG + chr7_4:61990889-61990908 Msa1169050:intron 50.0%
GTGGAGAGTAAGAAGTGGAG+AGG + chr7_4:61991001-61991020 Msa1169050:intron 50.0%
GAAGTGGAGAGGGTAGCTAA+AGG + chr7_4:61991012-61991031 Msa1169050:intron 50.0%
!! GGTTGGTGAGTTGCAGTGAA+AGG + chr7_4:61991088-61991107 Msa1169050:intron 50.0%
AGGCGAATTAGGAAGGGATG+GGG + chr7_4:61991108-61991127 Msa1169050:intron 50.0%
GCGGCTGATTGGAGAAAGAA+GGG + chr7_4:61991137-61991156 Msa1169050:intron 50.0%
CGGCTGATTGGAGAAAGAAG+GGG + chr7_4:61991138-61991157 Msa1169050:intron 50.0%
TGTCAATCGCGCTGCTATAG+CGG + chr7_4:61991522-61991541 Msa1169050:intron 50.0%
GCCTGCGAAACTATCGAACA+GGG - chr7_4:61991630-61991649 None:intergenic 50.0%
AGAAGGACACTTCACGCCAA+AGG - chr7_4:61991877-61991896 None:intergenic 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr7_4:61992079-61992098 None:intergenic 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr7_4:61992083-61992102 None:intergenic 50.0%
CGGCATGAACCTATATGCGA+AGG + chr7_4:61992977-61992996 Msa1169050:intron 50.0%
!! GCAAGATGGGTTACCTTGGT+CGG - chr7_4:61993477-61993496 None:intergenic 50.0%
!! AGGTGCAAGATGGGTTACCT+TGG - chr7_4:61993481-61993500 None:intergenic 50.0%
GTACAGTCACAGGTGCAAGA+TGG - chr7_4:61993491-61993510 None:intergenic 50.0%
ACTTCTGTCCAAGACCTTGC+TGG - chr7_4:61993518-61993537 None:intergenic 50.0%
CATCTGCCTTCACTGCTAGA+GGG - chr7_4:61993623-61993642 None:intergenic 50.0%
GTGAAGGCAGATGCATCATC+CGG + chr7_4:61993630-61993649 Msa1169050:CDS 50.0%
TCCGAGTCCGTGACATACTT+TGG + chr7_4:61994141-61994160 Msa1169050:intron 50.0%
GCCAAAGTATGTCACGGACT+CGG - chr7_4:61994145-61994164 None:intergenic 50.0%
GGAGATAAAGGTAGGGACTG+AGG + chr7_4:61994270-61994289 Msa1169050:CDS 50.0%
!! TGAGGTGCGATTTCGGGTTG+TGG - chr7_4:61989414-61989433 None:intergenic 55.0%
!! TGCATGGGTGGGTTAGGGTA+CGG - chr7_4:61989462-61989481 None:intergenic 55.0%
GATTCACCACGGGTCCACAA+GGG - chr7_4:61989581-61989600 None:intergenic 55.0%
TGATTCACCACGGGTCCACA+AGG - chr7_4:61989582-61989601 None:intergenic 55.0%
!! GGTGCAGGTTGATTCACCAC+GGG - chr7_4:61989591-61989610 None:intergenic 55.0%
CCCAGATACGGCAGCATCAA+AGG - chr7_4:61989727-61989746 None:intergenic 55.0%
TTGATGCTGCCGTATCTGGG+AGG + chr7_4:61989727-61989746 Msa1169050:CDS 55.0%
TTGTTCGCGGTATTCGGAGG+TGG + chr7_4:61990107-61990126 Msa1169050:intron 55.0%
!! ACCGGCGTTGACACATGTCA+AGG + chr7_4:61990275-61990294 Msa1169050:intron 55.0%
CGCACACTGAGCTAGCTACT+TGG + chr7_4:61990329-61990348 Msa1169050:intron 55.0%
ACTGAGCTAGCTACTTGGCG+CGG + chr7_4:61990334-61990353 Msa1169050:intron 55.0%
GGCGAATTAGGAAGGGATGG+GGG + chr7_4:61991109-61991128 Msa1169050:intron 55.0%
TTAGGAAGGGATGGGGGAGA+TGG + chr7_4:61991115-61991134 Msa1169050:intron 55.0%
GGCGGCTGATTGGAGAAAGA+AGG + chr7_4:61991136-61991155 Msa1169050:intron 55.0%
!! GCTGCTATAGCGGACAATCG+CGG + chr7_4:61991532-61991551 Msa1169050:intron 55.0%
!! CTGCTATAGCGGACAATCGC+GGG + chr7_4:61991533-61991552 Msa1169050:intron 55.0%
GCCCTGTTCGATAGTTTCGC+AGG + chr7_4:61991626-61991645 Msa1169050:intron 55.0%
CGCCTGCGAAACTATCGAAC+AGG - chr7_4:61991631-61991650 None:intergenic 55.0%
AGAAGGATGTGTCGCGGTCA+AGG - chr7_4:61991800-61991819 None:intergenic 55.0%
TGACCGCGACACATCCTTCT+TGG + chr7_4:61991800-61991819 Msa1169050:intron 55.0%
GGACCAAGAAGGATGTGTCG+CGG - chr7_4:61991806-61991825 None:intergenic 55.0%
AGCGTCTCACAGGACCAAGA+AGG - chr7_4:61991817-61991836 None:intergenic 55.0%
!! AGCAGAAGGAAGCGTCTCAC+AGG - chr7_4:61991827-61991846 None:intergenic 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr7_4:61992080-61992099 None:intergenic 55.0%
GCATCTGCCTTCACTGCTAG+AGG - chr7_4:61993624-61993643 None:intergenic 55.0%
TGGAATGCGGTATGAGCTGC+AGG + chr7_4:61993779-61993798 Msa1169050:CDS 55.0%
GGGTGAACAATTGTGTCGCG+AGG - chr7_4:61993888-61993907 None:intergenic 55.0%
TGTTCACCCCTGCCGACATA+TGG + chr7_4:61993899-61993918 Msa1169050:CDS 55.0%
!! TTACCGGAGGTGGTGGTGGT+GGG - chr7_4:61989389-61989408 None:intergenic 60.0%
!! TGTGGTGTTACCGGAGGTGG+TGG - chr7_4:61989396-61989415 None:intergenic 60.0%
!! GGTTGTGGTGTTACCGGAGG+TGG - chr7_4:61989399-61989418 None:intergenic 60.0%
!! TCGGGTTGTGGTGTTACCGG+AGG - chr7_4:61989402-61989421 None:intergenic 60.0%
GTACTACCCTTGTGGACCCG+TGG + chr7_4:61989572-61989591 Msa1169050:CDS 60.0%
! GCGTGTGAGTTGGGCCGAAA+AGG + chr7_4:61991205-61991224 Msa1169050:intron 60.0%
CTGCATCCTCACACCGACCA+AGG + chr7_4:61993461-61993480 Msa1169050:CDS 60.0%
GGGTTACCTTGGTCGGTGTG+AGG - chr7_4:61993470-61993489 None:intergenic 60.0%
TCGACGACGGTTGTGTCCGC+CGG - chr7_4:61989340-61989359 None:intergenic 65.0%
! AAGCGGTGGCGTGTCGACGA+CGG - chr7_4:61989353-61989372 None:intergenic 65.0%
TGGGTGAGTCCGTCGGGAAG+CGG - chr7_4:61989370-61989389 None:intergenic 65.0%
!! TGGTGGTGGGTGAGTCCGTC+GGG - chr7_4:61989376-61989395 None:intergenic 65.0%
!! GTGGTGGTGGGTGAGTCCGT+CGG - chr7_4:61989377-61989396 None:intergenic 65.0%
TCACCCACCACCACCACCTC+CGG + chr7_4:61989383-61989402 Msa1169050:CDS 65.0%
!! GTTACCGGAGGTGGTGGTGG+TGG - chr7_4:61989390-61989409 None:intergenic 65.0%
! GGTGTTACCGGAGGTGGTGG+TGG - chr7_4:61989393-61989412 None:intergenic 65.0%
TAGGGTACGGTGCGGCACCA+GGG - chr7_4:61989449-61989468 None:intergenic 65.0%
TTAGGGTACGGTGCGGCACC+AGG - chr7_4:61989450-61989469 None:intergenic 65.0%
!! GGGTGGGTTAGGGTACGGTG+CGG - chr7_4:61989457-61989476 None:intergenic 65.0%
GGAAGGGATGGGGGAGATGG+CGG + chr7_4:61991118-61991137 Msa1169050:intron 65.0%
! TGGGGGAGATGGCGGCTGAT+TGG + chr7_4:61991126-61991145 Msa1169050:intron 65.0%
GACACGCCACCGCTTCCCGA+CGG + chr7_4:61989358-61989377 Msa1169050:CDS 70.0%
GTGAGTCCGTCGGGAAGCGG+TGG - chr7_4:61989367-61989386 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 61988960 61994549 61988960 ID=Msa1169050;Name=Msa1169050
chr7_4 mRNA 61988960 61994549 61988960 ID=Msa1169050-mRNA-1;Parent=Msa1169050;Name=Msa1169050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=358|1|1|1|1|1|3|252|345
chr7_4 exon 61988960 61989748 61988960 ID=Msa1169050-mRNA-1:exon:19581;Parent=Msa1169050-mRNA-1
chr7_4 exon 61993425 61993920 61993425 ID=Msa1169050-mRNA-1:exon:19582;Parent=Msa1169050-mRNA-1
chr7_4 exon 61994187 61994549 61994187 ID=Msa1169050-mRNA-1:exon:19583;Parent=Msa1169050-mRNA-1
chr7_4 five_prime_UTR 61988960 61989317 61988960 ID=Msa1169050-mRNA-1:five_prime_utr;Parent=Msa1169050-mRNA-1
chr7_4 CDS 61989318 61989748 61989318 ID=Msa1169050-mRNA-1:cds;Parent=Msa1169050-mRNA-1
chr7_4 CDS 61993425 61993920 61993425 ID=Msa1169050-mRNA-1:cds;Parent=Msa1169050-mRNA-1
chr7_4 CDS 61994187 61994297 61994187 ID=Msa1169050-mRNA-1:cds;Parent=Msa1169050-mRNA-1
chr7_4 three_prime_UTR 61994298 61994549 61994298 ID=Msa1169050-mRNA-1:three_prime_utr;Parent=Msa1169050-mRNA-1
Gene Sequence

>Msa1169050

ATGGGTAATATCTCAAGCACCGGCGGACACAACCGTCGTCGACACGCCACCGCTTCCCGACGGACTCACCCACCACCACCACCTCCGGTAACACCACAACCCGAAATCGCACCTCATCAATTCGTTTACCCTGGTGCCGCACCGTACCCTAACCCACCCATGCATTATCCTCAATATCATTACCCTGGTTATTATCCACCACCAATACCTATGCCTCATCATCATCCTCATATGGATCCTGCTTGGGTTTCTCGGTACTACCCTTGTGGACCCGTGGTGAATCAACCTGCACCTTTTGTTGAGCATCAGAAAGCTGTTACTATTAGAAATGATGTTAATATTAAGAAGGAGACCATTGTAATTTCACCTGATGAGGAAAATCCTGGTTTTTTCCTTGTTTCGTTTACCTTTGATGCTGCCGTATCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGTAACCCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTAGTAAAGGTGGGTGACATGGATGTTTACCCTCTAGCAGTGAAGGCAGATGCATCATCCGGTAATCATGATGGATCAGATGAAACTGAGACATCTAGTAAACCAAACTCTCAGATAACTCAAGCGGTGTTTGAGAAGGAAAAAGGAGAATTCCGGGTAAAAGTTGTTAAGCAGATCTTGTCGGTGAATGGAATGCGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGATGTGGATGACAATGAACAAGGAAAAGAGTGTGTGATCTGCTTGTCAGAACCTCGCGACACAATTGTTCACCCCTGCCGACATATGTGCATGTGTAGTGGATGTGCAAAGGTATTAAGATTCCAGACAAATAGATGCCCGATTTGCAGACAACCAGTTGAAAGGCTTTTGGAGATAAAGGTAGGGACTGAGGAGTGA
Protein sequence

>Msa1169050

MGNISSTGGHNRRRHATASRRTHPPPPPPVTPQPEIAPHQFVYPGAAPYPNPPMHYPQYHYPGYYPPPIPMPHHHPHMDPAWVSRYYPCGPVVNQPAPFVEHQKAVTIRNDVNIKKETIVISPDEENPGFFLVSFTFDAAVSGSITIFFFAKEDEGCILTPTKVTHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLVKVGDMDVYPLAVKADASSGNHDGSDETETSSKPNSQITQAVFEKEKGEFRVKVVKQILSVNGMRYELQEIYGIGNSVESDVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE*