AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1393550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393550 MtrunA17_Chr8g0388411 95.714 140 6 0 1 140 1 140 3.93e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1393550 AT5G42070.1 78.571 70 15 0 65 134 69 138 4.04e-36 122

Find 65 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATGTATTCGTAAAAT+AGG 0.190213 tig0021743:+53257 Msa1393550:three_prime_UTR
TGTCCTGGATTTGTGGCTTC+TGG 0.277176 tig0021743:+52021 Msa1393550:CDS
GGTGGTATTGCAACAGTTCC+TGG 0.294401 tig0021743:+51964 Msa1393550:CDS
CATGGCCTGTATGCCTTTAT+AGG 0.312442 tig0021743:-52000 None:intergenic
CGCACCCTGCCCGAGTAAAA+AGG 0.330764 tig0021743:+51468 Msa1393550:five_prime_UTR
CTTTGGCTGGTGGCCTATAA+AGG 0.340571 tig0021743:+51987 Msa1393550:CDS
AAAATATGCTGTAAGGATTC+TGG 0.343912 tig0021743:+53220 Msa1393550:three_prime_UTR
ATTGCAACAGTTCCTGGCTT+TGG 0.355448 tig0021743:+51970 Msa1393550:CDS
CAGGCCATGTCCTGGATTTG+TGG 0.362074 tig0021743:+52014 Msa1393550:CDS
ATCAATGTATTCGTAAAATA+GGG 0.371971 tig0021743:+53258 Msa1393550:three_prime_UTR
TGCCCCTCTTCCTTAACCCT+GGG 0.391184 tig0021743:-53192 None:intergenic
TTGCCCCTCTTCCTTAACCC+TGG 0.391273 tig0021743:-53193 None:intergenic
CAACAGTTCCTGGCTTTGGC+TGG 0.392114 tig0021743:+51974 Msa1393550:CDS
AAAGTAATGTTGGAAGTTAA+CGG 0.425034 tig0021743:-53358 None:intergenic
CAGTTCCTGGCTTTGGCTGG+TGG 0.448784 tig0021743:+51977 Msa1393550:CDS
GCAGAAGAAATGAGTGAAGT+TGG 0.456714 tig0021743:-51746 None:intergenic
CAATGGTGAGGGTAGGATGC+AGG 0.456901 tig0021743:+51942 Msa1393550:CDS
GGAAGTTAACGGCAAGGAAC+CGG 0.465689 tig0021743:-53347 None:intergenic
TGACATAAAACCCAGGGTTA+AGG 0.473157 tig0021743:+53182 Msa1393550:three_prime_UTR
GAAACAGCAAGTTCATCATC+TGG 0.480522 tig0021743:-51770 None:intergenic
GACGAGGTTGTCTCCGGTAG+TGG 0.489301 tig0021743:+52075 Msa1393550:CDS
CCACCAGAAGCCACAAATCC+AGG 0.502695 tig0021743:-52024 None:intergenic
TGGATGGTACCTCTGTTTAG+TGG 0.503777 tig0021743:-51810 None:intergenic
AAGGCATACAGGCCATGTCC+TGG 0.519447 tig0021743:+52006 Msa1393550:CDS
TTGTATCATAAAAGTAATGT+TGG 0.520043 tig0021743:-53368 None:intergenic
TGCAATGTAATCATCTTATG+TGG 0.525133 tig0021743:+53284 Msa1393550:three_prime_UTR
AAAACCCAGGGTTAAGGAAG+AGG 0.530788 tig0021743:+53188 Msa1393550:three_prime_UTR
GGAACAAATATCTTAGTAGC+TGG 0.533811 tig0021743:-51707 None:intergenic
TGGTGGTAGGTACAGACGAC+AGG 0.534138 tig0021743:+52041 Msa1393550:CDS
GATTTGTGGCTTCTGGTGGT+AGG 0.534194 tig0021743:+52028 Msa1393550:CDS
GACTTGGAGTCAGTTGCAGT+TGG 0.535101 tig0021743:-52111 None:intergenic
ATAGGCCACCAGCCAAAGCC+AGG 0.536722 tig0021743:-51982 None:intergenic
TGAAGAGCTAAGTGTTTGCA+AGG 0.537825 tig0021743:+53132 Msa1393550:exon
AGCATGGACGAGGTTGTCTC+CGG 0.542240 tig0021743:+52069 Msa1393550:CDS
GAAGTTGGAGAGCATAGTGT+GGG 0.545271 tig0021743:-51731 None:intergenic
CACCTCAATGAAGCAGTGGC+TGG 0.545479 tig0021743:-53161 None:intergenic
GGAAACGAAGAAATTGAGAA+AGG 0.546629 tig0021743:+51916 Msa1393550:CDS
AAACCCAGGGTTAAGGAAGA+GGG 0.548593 tig0021743:+53189 Msa1393550:three_prime_UTR
TGAAGTTGGAGAGCATAGTG+TGG 0.558341 tig0021743:-51732 None:intergenic
CCTGGATTTGTGGCTTCTGG+TGG 0.563457 tig0021743:+52024 Msa1393550:CDS
GAAATTGAGAAAGGATGCAA+TGG 0.563789 tig0021743:+51925 Msa1393550:CDS
TGATGATAATGTTGAGGTGT+TGG 0.564881 tig0021743:-51653 None:intergenic
AAGGATGCAATGGTGAGGGT+AGG 0.574706 tig0021743:+51935 Msa1393550:CDS
AATGGTGAGGGTAGGATGCA+GGG 0.575709 tig0021743:+51943 Msa1393550:CDS
CAGACGACAGGGACAAAGCA+TGG 0.576125 tig0021743:+52053 Msa1393550:CDS
GGTGGCCTATAAAGGCATAC+AGG 0.580795 tig0021743:+51995 Msa1393550:CDS
GAGAAAGGATGCAATGGTGA+GGG 0.581838 tig0021743:+51931 Msa1393550:CDS
TATAAATTGAAGTAAAAGTG+TGG 0.587372 tig0021743:+51574 Msa1393550:five_prime_UTR
TACCAGCCACTGCTTCATTG+AGG 0.593729 tig0021743:+53159 Msa1393550:three_prime_UTR
AGACAATAGATACCTTGACT+TGG 0.607021 tig0021743:-52127 None:intergenic
ATGTCACCTCAATGAAGCAG+TGG 0.616278 tig0021743:-53165 None:intergenic
TGAGAAAGGATGCAATGGTG+AGG 0.617666 tig0021743:+51930 Msa1393550:CDS
TTGAGGTGACATAAAACCCA+GGG 0.626355 tig0021743:+53176 Msa1393550:three_prime_UTR
GTTGGAGAGCATAGTGTGGG+AGG 0.638611 tig0021743:-51728 None:intergenic
AATGTTGGAAGTTAACGGCA+AGG 0.641620 tig0021743:-53353 None:intergenic
AACAGCGGTTGCAAAGCATG+TGG 0.642827 tig0021743:+51895 Msa1393550:intron
AACCCAGGGTTAAGGAAGAG+GGG 0.643408 tig0021743:+53190 Msa1393550:three_prime_UTR
ACAGGGACAAAGCATGGACG+AGG 0.654227 tig0021743:+52059 Msa1393550:CDS
CTGCAACTGACTCCAAGTCA+AGG 0.664830 tig0021743:+52115 Msa1393550:CDS
ATTGAGGTGACATAAAACCC+AGG 0.671779 tig0021743:+53175 Msa1393550:three_prime_UTR
TGAACGTGATGATAATGTTG+AGG 0.683199 tig0021743:-51659 None:intergenic
GAAGCCACAAATCCAGGACA+TGG 0.686791 tig0021743:-52018 None:intergenic
GGTGGTAGGTACAGACGACA+GGG 0.692150 tig0021743:+52042 Msa1393550:CDS
CAGAATTCTCCACTAAACAG+AGG 0.708713 tig0021743:+51801 Msa1393550:CDS
GGTGAGGGTAGGATGCAGGG+TGG 0.740434 tig0021743:+51946 Msa1393550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATAAAAAATA+GGG - tig0021743:52335-52354 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG - tig0021743:52336-52355 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG + tig0021743:52335-52354 Msa1393550:intron 0.0%
!! AAATAAAAAAATAAAAAATA+GGG - tig0021743:52335-52354 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG - tig0021743:52336-52355 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG + tig0021743:52335-52354 Msa1393550:intron 0.0%
!!! AAAGATTTTTATTTAATGAA+GGG - tig0021743:51841-51860 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - tig0021743:51842-51861 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - tig0021743:52183-52202 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG + tig0021743:52893-52912 Msa1393550:intron 10.0%
!!! AAAGATTTTTATTTAATGAA+GGG - tig0021743:51841-51860 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - tig0021743:51842-51861 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - tig0021743:52183-52202 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG + tig0021743:52893-52912 Msa1393550:intron 10.0%
!!! TATCCGTAAATATTTTTTAT+CGG + tig0021743:51535-51554 Msa1393550:five_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG - tig0021743:51840-51859 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG - tig0021743:52621-52640 None:intergenic 15.0%
!!! TATCCGTAAATATTTTTTAT+CGG + tig0021743:51535-51554 Msa1393550:five_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG - tig0021743:51840-51859 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG - tig0021743:52621-52640 None:intergenic 15.0%
!! ACACCGATAAAAAATATTTA+CGG - tig0021743:51541-51560 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG + tig0021743:51574-51593 Msa1393550:five_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG - tig0021743:51839-51858 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG - tig0021743:52175-52194 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + tig0021743:52296-52315 Msa1393550:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + tig0021743:52297-52316 Msa1393550:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + tig0021743:52948-52967 Msa1393550:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + tig0021743:53068-53087 Msa1393550:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + tig0021743:53257-53276 Msa1393550:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + tig0021743:53258-53277 Msa1393550:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + tig0021743:53328-53347 Msa1393550:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - tig0021743:53371-53390 None:intergenic 20.0%
!! ACACCGATAAAAAATATTTA+CGG - tig0021743:51541-51560 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG + tig0021743:51574-51593 Msa1393550:five_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG - tig0021743:51839-51858 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG - tig0021743:52175-52194 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + tig0021743:52296-52315 Msa1393550:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + tig0021743:52297-52316 Msa1393550:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + tig0021743:52948-52967 Msa1393550:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + tig0021743:53068-53087 Msa1393550:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + tig0021743:53257-53276 Msa1393550:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + tig0021743:53258-53277 Msa1393550:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + tig0021743:53328-53347 Msa1393550:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - tig0021743:53371-53390 None:intergenic 20.0%
!! TCTATTAACTCCTTTTTACT+CGG - tig0021743:51481-51500 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG + tig0021743:51684-51703 Msa1393550:CDS 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + tig0021743:52264-52283 Msa1393550:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + tig0021743:52298-52317 Msa1393550:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG + tig0021743:52344-52363 Msa1393550:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + tig0021743:52345-52364 Msa1393550:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - tig0021743:52528-52547 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG + tig0021743:52625-52644 Msa1393550:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - tig0021743:52800-52819 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - tig0021743:52857-52876 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + tig0021743:52955-52974 Msa1393550:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - tig0021743:53096-53115 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + tig0021743:53094-53113 Msa1393550:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + tig0021743:53213-53232 Msa1393550:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - tig0021743:53361-53380 None:intergenic 25.0%
!! TCTATTAACTCCTTTTTACT+CGG - tig0021743:51481-51500 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG + tig0021743:51684-51703 Msa1393550:CDS 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + tig0021743:52264-52283 Msa1393550:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + tig0021743:52298-52317 Msa1393550:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG + tig0021743:52344-52363 Msa1393550:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + tig0021743:52345-52364 Msa1393550:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - tig0021743:52528-52547 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG + tig0021743:52625-52644 Msa1393550:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - tig0021743:52800-52819 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - tig0021743:52857-52876 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + tig0021743:52955-52974 Msa1393550:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - tig0021743:53096-53115 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + tig0021743:53094-53113 Msa1393550:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + tig0021743:53213-53232 Msa1393550:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - tig0021743:53361-53380 None:intergenic 25.0%
! CTATTAACTCCTTTTTACTC+GGG - tig0021743:51480-51499 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG + tig0021743:51549-51568 Msa1393550:five_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG + tig0021743:51550-51569 Msa1393550:five_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - tig0021743:52091-52110 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + tig0021743:52144-52163 Msa1393550:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + tig0021743:52145-52164 Msa1393550:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + tig0021743:52253-52272 Msa1393550:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + tig0021743:52346-52365 Msa1393550:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + tig0021743:52414-52433 Msa1393550:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - tig0021743:52520-52539 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG - tig0021743:52560-52579 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG + tig0021743:52611-52630 Msa1393550:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + tig0021743:52696-52715 Msa1393550:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - tig0021743:52820-52839 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - tig0021743:52831-52850 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - tig0021743:52846-52865 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - tig0021743:53058-53077 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + tig0021743:53098-53117 Msa1393550:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + tig0021743:53220-53239 Msa1393550:three_prime_UTR 30.0%
TGCAATGTAATCATCTTATG+TGG + tig0021743:53284-53303 Msa1393550:three_prime_UTR 30.0%
! CTATTAACTCCTTTTTACTC+GGG - tig0021743:51480-51499 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG + tig0021743:51549-51568 Msa1393550:five_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG + tig0021743:51550-51569 Msa1393550:five_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - tig0021743:52091-52110 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + tig0021743:52144-52163 Msa1393550:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + tig0021743:52145-52164 Msa1393550:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + tig0021743:52253-52272 Msa1393550:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + tig0021743:52346-52365 Msa1393550:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + tig0021743:52414-52433 Msa1393550:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - tig0021743:52520-52539 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG - tig0021743:52560-52579 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG + tig0021743:52611-52630 Msa1393550:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + tig0021743:52696-52715 Msa1393550:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - tig0021743:52820-52839 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - tig0021743:52831-52850 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - tig0021743:52846-52865 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - tig0021743:53058-53077 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + tig0021743:53098-53117 Msa1393550:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + tig0021743:53220-53239 Msa1393550:three_prime_UTR 30.0%
TGCAATGTAATCATCTTATG+TGG + tig0021743:53284-53303 Msa1393550:three_prime_UTR 30.0%
! TGATGATAATGTTGAGGTGT+TGG - tig0021743:51656-51675 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - tig0021743:51662-51681 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - tig0021743:51710-51729 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG - tig0021743:51833-51852 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + tig0021743:51916-51935 Msa1393550:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + tig0021743:51925-51944 Msa1393550:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - tig0021743:52130-52149 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + tig0021743:52229-52248 Msa1393550:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + tig0021743:52230-52249 Msa1393550:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + tig0021743:52437-52456 Msa1393550:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + tig0021743:52438-52457 Msa1393550:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + tig0021743:52452-52471 Msa1393550:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + tig0021743:52648-52667 Msa1393550:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + tig0021743:52695-52714 Msa1393550:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - tig0021743:52780-52799 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - tig0021743:52981-53000 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - tig0021743:53000-53019 None:intergenic 35.0%
! TGATGATAATGTTGAGGTGT+TGG - tig0021743:51656-51675 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - tig0021743:51662-51681 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - tig0021743:51710-51729 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG - tig0021743:51833-51852 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + tig0021743:51916-51935 Msa1393550:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + tig0021743:51925-51944 Msa1393550:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - tig0021743:52130-52149 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + tig0021743:52229-52248 Msa1393550:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + tig0021743:52230-52249 Msa1393550:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + tig0021743:52437-52456 Msa1393550:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + tig0021743:52438-52457 Msa1393550:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + tig0021743:52452-52471 Msa1393550:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + tig0021743:52648-52667 Msa1393550:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + tig0021743:52695-52714 Msa1393550:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - tig0021743:52780-52799 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - tig0021743:52981-53000 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - tig0021743:53000-53019 None:intergenic 35.0%
TTGTCATTCTCTCTCTCTCT+CGG - tig0021743:51616-51635 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - tig0021743:51695-51714 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - tig0021743:51749-51768 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - tig0021743:51773-51792 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + tig0021743:51801-51820 Msa1393550:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + tig0021743:51880-51899 Msa1393550:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - tig0021743:52443-52462 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - tig0021743:52644-52663 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - tig0021743:52995-53014 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + tig0021743:53132-53151 Msa1393550:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + tig0021743:53175-53194 Msa1393550:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + tig0021743:53176-53195 Msa1393550:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + tig0021743:53182-53201 Msa1393550:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - tig0021743:53356-53375 None:intergenic 40.0%
TTGTCATTCTCTCTCTCTCT+CGG - tig0021743:51616-51635 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - tig0021743:51695-51714 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - tig0021743:51749-51768 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - tig0021743:51773-51792 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + tig0021743:51801-51820 Msa1393550:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + tig0021743:51880-51899 Msa1393550:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - tig0021743:52443-52462 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - tig0021743:52644-52663 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - tig0021743:52995-53014 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + tig0021743:53132-53151 Msa1393550:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + tig0021743:53175-53194 Msa1393550:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + tig0021743:53176-53195 Msa1393550:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + tig0021743:53182-53201 Msa1393550:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - tig0021743:53356-53375 None:intergenic 40.0%
! AACTCCTTTTTACTCGGGCA+GGG - tig0021743:51475-51494 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG - tig0021743:51476-51495 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG - tig0021743:51615-51634 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG - tig0021743:51734-51753 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - tig0021743:51735-51754 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - tig0021743:51813-51832 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG - tig0021743:51829-51848 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + tig0021743:51930-51949 Msa1393550:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + tig0021743:51931-51950 Msa1393550:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + tig0021743:51970-51989 Msa1393550:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - tig0021743:52003-52022 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - tig0021743:52605-52624 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + tig0021743:52717-52736 Msa1393550:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - tig0021743:52992-53011 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - tig0021743:53168-53187 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + tig0021743:53188-53207 Msa1393550:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + tig0021743:53189-53208 Msa1393550:three_prime_UTR 45.0%
! AACTCCTTTTTACTCGGGCA+GGG - tig0021743:51475-51494 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG - tig0021743:51476-51495 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG - tig0021743:51615-51634 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG - tig0021743:51734-51753 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - tig0021743:51735-51754 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - tig0021743:51813-51832 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG - tig0021743:51829-51848 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + tig0021743:51930-51949 Msa1393550:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + tig0021743:51931-51950 Msa1393550:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + tig0021743:51970-51989 Msa1393550:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - tig0021743:52003-52022 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - tig0021743:52605-52624 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + tig0021743:52717-52736 Msa1393550:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - tig0021743:52992-53011 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - tig0021743:53168-53187 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + tig0021743:53188-53207 Msa1393550:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + tig0021743:53189-53208 Msa1393550:three_prime_UTR 45.0%
GTCATTCTCTCTCTCTCTCG+GGG - tig0021743:51614-51633 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG + tig0021743:51895-51914 Msa1393550:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + tig0021743:51935-51954 Msa1393550:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + tig0021743:51943-51962 Msa1393550:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + tig0021743:51964-51983 Msa1393550:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + tig0021743:51987-52006 Msa1393550:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + tig0021743:51995-52014 Msa1393550:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - tig0021743:52021-52040 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + tig0021743:52021-52040 Msa1393550:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + tig0021743:52028-52047 Msa1393550:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - tig0021743:52114-52133 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + tig0021743:52115-52134 Msa1393550:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - tig0021743:52598-52617 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + tig0021743:52734-52753 Msa1393550:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + tig0021743:53159-53178 Msa1393550:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + tig0021743:53190-53209 Msa1393550:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - tig0021743:53350-53369 None:intergenic 50.0%
GTCATTCTCTCTCTCTCTCG+GGG - tig0021743:51614-51633 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG + tig0021743:51895-51914 Msa1393550:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + tig0021743:51935-51954 Msa1393550:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + tig0021743:51943-51962 Msa1393550:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + tig0021743:51964-51983 Msa1393550:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + tig0021743:51987-52006 Msa1393550:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + tig0021743:51995-52014 Msa1393550:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - tig0021743:52021-52040 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + tig0021743:52021-52040 Msa1393550:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + tig0021743:52028-52047 Msa1393550:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - tig0021743:52114-52133 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + tig0021743:52115-52134 Msa1393550:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - tig0021743:52598-52617 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + tig0021743:52734-52753 Msa1393550:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + tig0021743:53159-53178 Msa1393550:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + tig0021743:53190-53209 Msa1393550:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - tig0021743:53350-53369 None:intergenic 50.0%
! GTTGGAGAGCATAGTGTGGG+AGG - tig0021743:51731-51750 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + tig0021743:51942-51961 Msa1393550:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + tig0021743:51974-51993 Msa1393550:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + tig0021743:52006-52025 Msa1393550:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + tig0021743:52014-52033 Msa1393550:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - tig0021743:52027-52046 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + tig0021743:52024-52043 Msa1393550:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + tig0021743:52041-52060 Msa1393550:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + tig0021743:52042-52061 Msa1393550:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + tig0021743:52053-52072 Msa1393550:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + tig0021743:52059-52078 Msa1393550:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + tig0021743:52069-52088 Msa1393550:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + tig0021743:52595-52614 Msa1393550:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - tig0021743:52599-52618 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - tig0021743:53164-53183 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - tig0021743:53195-53214 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - tig0021743:53196-53215 None:intergenic 55.0%
! GTTGGAGAGCATAGTGTGGG+AGG - tig0021743:51731-51750 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + tig0021743:51942-51961 Msa1393550:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + tig0021743:51974-51993 Msa1393550:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + tig0021743:52006-52025 Msa1393550:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + tig0021743:52014-52033 Msa1393550:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - tig0021743:52027-52046 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + tig0021743:52024-52043 Msa1393550:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + tig0021743:52041-52060 Msa1393550:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + tig0021743:52042-52061 Msa1393550:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + tig0021743:52053-52072 Msa1393550:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + tig0021743:52059-52078 Msa1393550:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + tig0021743:52069-52088 Msa1393550:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + tig0021743:52595-52614 Msa1393550:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - tig0021743:52599-52618 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - tig0021743:53164-53183 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - tig0021743:53195-53214 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - tig0021743:53196-53215 None:intergenic 55.0%
CGCACCCTGCCCGAGTAAAA+AGG + tig0021743:51468-51487 Msa1393550:five_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + tig0021743:51977-51996 Msa1393550:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - tig0021743:51985-52004 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + tig0021743:52075-52094 Msa1393550:CDS 60.0%
CGCACCCTGCCCGAGTAAAA+AGG + tig0021743:51468-51487 Msa1393550:five_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + tig0021743:51977-51996 Msa1393550:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - tig0021743:51985-52004 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + tig0021743:52075-52094 Msa1393550:CDS 60.0%
GGTGAGGGTAGGATGCAGGG+TGG + tig0021743:51946-51965 Msa1393550:CDS 65.0%
GGTGAGGGTAGGATGCAGGG+TGG + tig0021743:51946-51965 Msa1393550:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0021743 gene 51468 53436 51468 ID=Msa1393550;Name=Msa1393550
tig0021743 mRNA 51468 53436 51468 ID=Msa1393550-mRNA-1;Parent=Msa1393550;Name=Msa1393550-mRNA-1;_AED=0.35;_eAED=0.35;_QI=161|1|1|1|1|1|3|294|155
tig0021743 exon 51468 51822 51468 ID=Msa1393550-mRNA-1:exon:13865;Parent=Msa1393550-mRNA-1
tig0021743 exon 51900 52136 51900 ID=Msa1393550-mRNA-1:exon:13866;Parent=Msa1393550-mRNA-1
tig0021743 exon 53106 53436 53106 ID=Msa1393550-mRNA-1:exon:13867;Parent=Msa1393550-mRNA-1
tig0021743 five_prime_UTR 51468 51628 51468 ID=Msa1393550-mRNA-1:five_prime_utr;Parent=Msa1393550-mRNA-1
tig0021743 CDS 51629 51822 51629 ID=Msa1393550-mRNA-1:cds;Parent=Msa1393550-mRNA-1
tig0021743 CDS 51900 52136 51900 ID=Msa1393550-mRNA-1:cds;Parent=Msa1393550-mRNA-1
tig0021743 CDS 53106 53142 53106 ID=Msa1393550-mRNA-1:cds;Parent=Msa1393550-mRNA-1
tig0021743 three_prime_UTR 53143 53436 53143 ID=Msa1393550-mRNA-1:three_prime_utr;Parent=Msa1393550-mRNA-1
Gene Sequence

>Msa1393550

ATGACAACAGCTTTCTTCACAGTTCCAACACCTCAACATTATCATCACGTTCAATTGTACAAACCAAAAAAATCATGGCCAGCTACTAAGATATTTGTTCCTCCCACACTATGCTCTCCAACTTCACTCATTTCTTCTGCACCAGATGATGAACTTGCTGTTTCTGATCAATCAGAATTCTCCACTAAACAGAGCGGTTGCAAAGCATGTGGAAACGAAGAAATTGAGAAAGGATGCAATGGTGAGGGTAGGATGCAGGGTGGTATTGCAACAGTTCCTGGCTTTGGCTGGTGGCCTATAAAGGCATACAGGCCATGTCCTGGATTTGTGGCTTCTGGTGGTAGGTACAGACGACAGGGACAAAGCATGGACGAGGTTGTCTCCGGTAGTGGCAAAATTAAAACACCAACTGCAACTGACTCCAAGTCAAGTAACAAAAAGGATGGATCGAACAAATTGAAGAGCTAA

Protein sequence

>Msa1393550

MTTAFFTVPTPQHYHHVQLYKPKKSWPATKIFVPPTLCSPTSLISSAPDDELAVSDQSEFSTKQSGCKACGNEEIEKGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGSGKIKTPTATDSKSSNKKDGSNKLKS*