Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1129600 | XP_013450547.1 | 94.464 | 560 | 19 | 4 | 1 | 559 | 1 | 549 | 0.0 | 1073 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1129600 | sp|Q8GWB7|GUX6_ARATH | 65.642 | 553 | 164 | 7 | 11 | 559 | 7 | 537 | 0.0 | 676 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1129600 | A0A072UFK8 | 93.381 | 559 | 27 | 2 | 1 | 559 | 1 | 549 | 0.0 | 1058 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0033820 | Msa1129600 | 0.806450 | 8.176313e-50 | -8.615850e-47 |
Msa0655970 | Msa1129600 | 0.832132 | 1.125387e-55 | -8.615850e-47 |
Msa0982110 | Msa1129600 | 0.801751 | 7.765459e-49 | -8.615850e-47 |
Msa1090150 | Msa1129600 | 0.815996 | 6.942340e-52 | -8.615850e-47 |
Msa1127910 | Msa1129600 | 0.818849 | 1.581760e-52 | -8.615850e-47 |
Msa1129600 | Msa1165820 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
Msa1129600 | Msa1168960 | 0.810192 | 1.302297e-50 | -8.615850e-47 |
Msa1129600 | Msa1169050 | 0.802493 | 5.464994e-49 | -8.615850e-47 |
Msa1129600 | Msa1401070 | 0.976970 | 7.448134e-143 | -8.615850e-47 |
Msa0535020 | Msa1129600 | -0.805085 | 1.582274e-49 | -8.615850e-47 |
Msa0535050 | Msa1129600 | -0.800744 | 1.248298e-48 | -8.615850e-47 |
Msa0561420 | Msa1129600 | -0.814206 | 1.733508e-51 | -8.615850e-47 |
Msa0569100 | Msa1129600 | 0.803254 | 3.805898e-49 | -8.615850e-47 |
Msa0570250 | Msa1129600 | -0.807194 | 5.693800e-50 | -8.615850e-47 |
Msa0846070 | Msa1129600 | -0.808120 | 3.619392e-50 | -8.615850e-47 |
Msa0882430 | Msa1129600 | 0.807012 | 6.221597e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1129600 | MtrunA17_Chr7g0274421 | 93.381 | 559 | 27 | 2 | 1 | 559 | 1 | 549 | 0.0 | 1058 |
Msa1129600 | MtrunA17_Chr1g0190421 | 77.505 | 529 | 110 | 2 | 32 | 559 | 21 | 541 | 0.0 | 837 |
Msa1129600 | MtrunA17_Chr5g0399211 | 32.700 | 263 | 159 | 8 | 33 | 283 | 47 | 303 | 1.65e-32 | 130 |
Msa1129600 | MtrunA17_Chr4g0056181 | 30.916 | 262 | 163 | 8 | 34 | 283 | 35 | 290 | 2.91e-28 | 118 |
Msa1129600 | MtrunA17_Chr3g0129911 | 34.969 | 163 | 105 | 1 | 37 | 198 | 305 | 467 | 2.66e-26 | 113 |
Msa1129600 | MtrunA17_Chr1g0159301 | 34.731 | 167 | 104 | 4 | 35 | 198 | 311 | 475 | 9.46e-26 | 111 |
Msa1129600 | MtrunA17_Chr7g0272921 | 35.714 | 168 | 101 | 2 | 38 | 198 | 270 | 437 | 5.96e-24 | 105 |
Msa1129600 | MtrunA17_Chr1g0153481 | 31.707 | 164 | 111 | 1 | 35 | 197 | 299 | 462 | 1.82e-23 | 104 |
Msa1129600 | MtrunA17_Chr1g0153471 | 31.098 | 164 | 112 | 1 | 35 | 197 | 295 | 458 | 4.24e-23 | 103 |
Msa1129600 | MtrunA17_Chr1g0191821 | 34.337 | 166 | 104 | 2 | 38 | 198 | 267 | 432 | 4.82e-23 | 103 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1129600 | AT5G18480.1 | 65.642 | 553 | 164 | 7 | 11 | 559 | 7 | 537 | 0.0 | 676 |
Msa1129600 | AT1G77130.1 | 32.051 | 234 | 135 | 6 | 35 | 263 | 283 | 497 | 6.71e-28 | 118 |
Msa1129600 | AT1G08990.1 | 41.358 | 162 | 92 | 3 | 38 | 197 | 279 | 439 | 8.17e-28 | 118 |
Msa1129600 | AT3G18660.2 | 33.333 | 183 | 119 | 2 | 17 | 198 | 304 | 484 | 4.04e-27 | 116 |
Msa1129600 | AT3G18660.3 | 33.333 | 183 | 119 | 2 | 17 | 198 | 299 | 479 | 4.48e-27 | 116 |
Msa1129600 | AT3G18660.1 | 33.333 | 183 | 119 | 2 | 17 | 198 | 300 | 480 | 4.61e-27 | 116 |
Msa1129600 | AT4G16600.1 | 31.801 | 261 | 161 | 9 | 34 | 282 | 56 | 311 | 9.65e-27 | 114 |
Msa1129600 | AT2G35710.1 | 31.034 | 261 | 162 | 8 | 34 | 282 | 60 | 314 | 3.00e-26 | 112 |
Msa1129600 | AT2G35710.4 | 31.034 | 261 | 162 | 8 | 34 | 282 | 60 | 314 | 4.35e-26 | 109 |
Msa1129600 | AT1G54940.1 | 36.646 | 161 | 101 | 1 | 38 | 197 | 272 | 432 | 5.34e-24 | 106 |
Msa1129600 | AT4G33330.1 | 33.537 | 164 | 108 | 1 | 35 | 197 | 299 | 462 | 2.64e-22 | 101 |
Msa1129600 | AT4G33330.4 | 33.537 | 164 | 108 | 1 | 35 | 197 | 310 | 473 | 2.92e-22 | 101 |
Msa1129600 | AT4G33330.2 | 33.537 | 164 | 108 | 1 | 35 | 197 | 299 | 462 | 3.42e-22 | 101 |
Msa1129600 | AT4G33330.5 | 33.537 | 164 | 108 | 1 | 35 | 197 | 231 | 394 | 3.94e-22 | 100 |
Msa1129600 | AT2G35710.2 | 32.178 | 202 | 125 | 6 | 87 | 282 | 11 | 206 | 3.81e-21 | 96.3 |
Msa1129600 | AT4G33330.3 | 33.544 | 158 | 104 | 1 | 35 | 191 | 310 | 467 | 5.66e-21 | 96.7 |
Msa1129600 | AT1G60450.1 | 25.556 | 270 | 137 | 8 | 35 | 263 | 18 | 264 | 1.18e-16 | 82.0 |
Msa1129600 | AT1G60470.1 | 26.217 | 267 | 133 | 11 | 38 | 263 | 24 | 267 | 2.64e-14 | 74.7 |
Msa1129600 | AT1G56600.1 | 24.823 | 282 | 140 | 9 | 27 | 263 | 12 | 266 | 9.41e-13 | 70.1 |
Msa1129600 | AT1G09350.1 | 26.259 | 278 | 132 | 10 | 32 | 263 | 10 | 260 | 1.42e-12 | 69.7 |
Find 145 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAATGTTTATTGTATTATT+TGG | 0.112274 | 7_3:-81579439 | Msa1129600:CDS |
GAAAATAGTCATTAGGATTT+TGG | 0.140955 | 7_3:+81580239 | None:intergenic |
CGTTGGATATATTTATTTAA+AGG | 0.166832 | 7_3:+81582209 | None:intergenic |
CAAAACAACCATGTGTTTAT+TGG | 0.172219 | 7_3:+81581957 | None:intergenic |
CTCGTCACTTCCTGAGTCTT+TGG | 0.182248 | 7_3:-81579359 | Msa1129600:CDS |
GAGTCTTTGGATTATGATTC+TGG | 0.187029 | 7_3:-81579346 | Msa1129600:CDS |
GTGTTCGTCCTAAGAGATTT+TGG | 0.201254 | 7_3:-81581749 | Msa1129600:CDS |
GGTCTGGATTTCAACTCTTC+TGG | 0.218207 | 7_3:+81581247 | None:intergenic |
GTGGGGTTCTTCAGGATGTT+AGG | 0.229561 | 7_3:-81580300 | Msa1129600:intron |
GTTGATAGTCTCTCCATTTC+CGG | 0.233884 | 7_3:+81581220 | None:intergenic |
GTGCAAGGTTCCTACCTATT+TGG | 0.237507 | 7_3:-81579584 | Msa1129600:CDS |
TTCTGTCTGTTTCTGTTTAA+CGG | 0.247943 | 7_3:-81579554 | Msa1129600:CDS |
CAGCTTGGGGAGTCCCTTCC+TGG | 0.263990 | 7_3:-81580274 | Msa1129600:CDS |
ATACGGAGATGAATTCTTAT+TGG | 0.271311 | 7_3:-81582019 | Msa1129600:CDS |
CAATAAACACATGGTTGTTT+TGG | 0.272587 | 7_3:-81581956 | Msa1129600:CDS |
AACTCTTCTGGGGACAAGTT+TGG | 0.282864 | 7_3:+81581259 | None:intergenic |
GTTATCTTCATTTGGTTTAT+CGG | 0.283666 | 7_3:-81579414 | Msa1129600:CDS |
ATGAAACACAGGCTCCTATT+TGG | 0.301950 | 7_3:+81578345 | None:intergenic |
CTTCAATTCGAACCTTGTTT+AGG | 0.314665 | 7_3:-81582081 | Msa1129600:CDS |
ATTTGGAGGTTATCTTCATT+TGG | 0.317707 | 7_3:-81579422 | Msa1129600:CDS |
GCTATCCGGTCATTCCTAAA+AGG | 0.323926 | 7_3:-81578390 | Msa1129600:CDS |
GCTACATGGTACTATGGATT+AGG | 0.324256 | 7_3:-81579177 | Msa1129600:CDS |
CTCCATTTCCGGAACAGGTC+TGG | 0.335358 | 7_3:+81581231 | None:intergenic |
TGCAAGGTTCCTACCTATTT+GGG | 0.337684 | 7_3:-81579583 | Msa1129600:CDS |
TTGATCTAATCTTATAATAA+AGG | 0.339906 | 7_3:+81579997 | None:intergenic |
TACGGAGATGAATTCTTATT+GGG | 0.349527 | 7_3:-81582018 | Msa1129600:CDS |
TTCACAAGAAAATAGTCATT+AGG | 0.353485 | 7_3:+81580232 | None:intergenic |
TTATTGGGCGTTCGTGTTCT+CGG | 0.354632 | 7_3:-81582003 | Msa1129600:CDS |
CTTGGGACTGGTGGACATCT+TGG | 0.360363 | 7_3:-81580469 | Msa1129600:CDS |
CGCCAACTGATTCTACTGTT+TGG | 0.368147 | 7_3:+81582141 | None:intergenic |
GGTTAGGTTTGATGGTTGTC+GGG | 0.371768 | 7_3:-81578458 | Msa1129600:CDS |
CTCTTAGGACGAACACGATT+AGG | 0.374110 | 7_3:+81581756 | None:intergenic |
CAGTCCACGGCATCACTTGC+CGG | 0.376274 | 7_3:+81579491 | None:intergenic |
ATCCAGACCTGTTCCGGAAA+TGG | 0.383357 | 7_3:-81581233 | Msa1129600:CDS |
GTTGAAATCCAGACCTGTTC+CGG | 0.386303 | 7_3:-81581239 | Msa1129600:CDS |
ACGGCTGCTGTGGTGTCTCT+TGG | 0.387385 | 7_3:-81579535 | Msa1129600:CDS |
CCACCAGTCCCAAGGCTTAA+GGG | 0.387655 | 7_3:+81580478 | None:intergenic |
AGGTTAGGTTTGATGGTTGT+CGG | 0.394243 | 7_3:-81578459 | Msa1129600:CDS |
GTCTGGATTTCAACTCTTCT+GGG | 0.395720 | 7_3:+81581248 | None:intergenic |
TAGAACAACAATACAAATCT+AGG | 0.397919 | 7_3:+81578250 | None:intergenic |
ATTGGGAAAGTCAGAGTAAT+AGG | 0.399496 | 7_3:+81581297 | None:intergenic |
AGTCTCTCCATTTCCGGAAC+AGG | 0.401528 | 7_3:+81581226 | None:intergenic |
TAAACACCCCAAAATCTCTT+AGG | 0.401974 | 7_3:+81581741 | None:intergenic |
CTAGTTGAAGATGTAAATAA+AGG | 0.402579 | 7_3:-81578230 | Msa1129600:three_prime_UTR |
GACAGAAATACCGCCCAAAT+AGG | 0.402864 | 7_3:+81579570 | None:intergenic |
AGGATGTTAGGGAACAGCTT+GGG | 0.405735 | 7_3:-81580288 | Msa1129600:CDS |
TCCACCAGTCCCAAGGCTTA+AGG | 0.409126 | 7_3:+81580477 | None:intergenic |
TTTCAGTCGTCTCTGACCTT+CGG | 0.409977 | 7_3:+81582286 | None:intergenic |
ATTACCTGCCAGACATCAAC+AGG | 0.412860 | 7_3:+81580437 | None:intergenic |
ATGTATCATTGTATTTGCTT+AGG | 0.416458 | 7_3:-81578196 | Msa1129600:three_prime_UTR |
CTACATGGTACTATGGATTA+GGG | 0.418213 | 7_3:-81579176 | Msa1129600:CDS |
TGGATTAGGGATGGCCTTGT+TGG | 0.421428 | 7_3:-81579163 | Msa1129600:CDS |
TGGGGTTCTTCAGGATGTTA+GGG | 0.430964 | 7_3:-81580299 | Msa1129600:intron |
ATTATCCCTCTTGTTTCCGT+TGG | 0.431578 | 7_3:+81582192 | None:intergenic |
ATATTTATTTAAAGGAAAGT+TGG | 0.431720 | 7_3:+81582217 | None:intergenic |
CTCTGACCTTCGGTCACCAC+TGG | 0.435511 | 7_3:+81582296 | None:intergenic |
AACCATGTGTTTATTGGATC+TGG | 0.436495 | 7_3:+81581963 | None:intergenic |
CATTCTGAGAGGTTGAATTC+CGG | 0.440137 | 7_3:-81581494 | Msa1129600:CDS |
TTATTCTTTCAAAATCTAGT+TGG | 0.442653 | 7_3:-81578151 | Msa1129600:three_prime_UTR |
CACTGGGACCCCTTAAGCCT+TGG | 0.445458 | 7_3:-81580487 | Msa1129600:CDS |
AGTCCACGGCATCACTTGCC+GGG | 0.455569 | 7_3:+81579492 | None:intergenic |
AGTGGGATATTGCTCCAAAT+AGG | 0.456014 | 7_3:-81578359 | Msa1129600:CDS |
GATGCTGCTACATGGTACTA+TGG | 0.457667 | 7_3:-81579183 | Msa1129600:CDS |
ATTGGATCTGGTGTCGCGTA+TGG | 0.460416 | 7_3:+81581975 | None:intergenic |
CGGCAAGTGATGCCGTGGAC+TGG | 0.461514 | 7_3:-81579490 | Msa1129600:CDS |
TCTTCATTTGGTTTATCGGT+GGG | 0.463764 | 7_3:-81579410 | Msa1129600:CDS |
CTGCTATAATTCACTTATGA+AGG | 0.468846 | 7_3:-81580170 | Msa1129600:intron |
GATGTTGAGATAGTTGTATA+AGG | 0.472611 | 7_3:+81579963 | None:intergenic |
ATGTTTATTGTATTATTTGG+AGG | 0.476336 | 7_3:-81579436 | Msa1129600:CDS |
CAATTCGAACCTTGTTTAGG+AGG | 0.477001 | 7_3:-81582078 | Msa1129600:CDS |
CATATTAAGATTTGTTTCGA+TGG | 0.477072 | 7_3:-81579634 | Msa1129600:intron |
GCCGCCTCTTGTTCCAGGAA+GGG | 0.477864 | 7_3:+81580261 | None:intergenic |
CTTCTGAACATCTTGCTATC+CGG | 0.479536 | 7_3:-81578404 | Msa1129600:CDS |
GAGGTTGAATTCCGGAGTTA+TGG | 0.484212 | 7_3:-81581486 | Msa1129600:CDS |
ATCTTCATTTGGTTTATCGG+TGG | 0.485026 | 7_3:-81579411 | Msa1129600:CDS |
AGGAATCAATTCAATCCATC+AGG | 0.487708 | 7_3:-81579940 | Msa1129600:intron |
GGGATGGCCTTGTTGGCCAT+TGG | 0.489010 | 7_3:-81579156 | Msa1129600:CDS |
GACCCCTTAAGCCTTGGGAC+TGG | 0.492980 | 7_3:-81580481 | Msa1129600:CDS |
ATAATAAGCGGTGATGTAAA+CGG | 0.494535 | 7_3:-81578307 | Msa1129600:three_prime_UTR |
ATAATAAAGCACAGAATGGT+AGG | 0.502328 | 7_3:+81580197 | None:intergenic |
TTGCAGAATCGAGAGTACTT+TGG | 0.502931 | 7_3:-81580059 | Msa1129600:intron |
GAGATAGTTGTATAAGGAAG+TGG | 0.503037 | 7_3:+81579969 | None:intergenic |
GGCCGCCTCTTGTTCCAGGA+AGG | 0.503271 | 7_3:+81580260 | None:intergenic |
ACTGGGACCCCTTAAGCCTT+GGG | 0.507201 | 7_3:-81580486 | Msa1129600:CDS |
CCCTTAAGCCTTGGGACTGG+TGG | 0.507393 | 7_3:-81580478 | Msa1129600:CDS |
AGGCACAATTCTGTCGGGTA+AGG | 0.509918 | 7_3:+81578128 | None:intergenic |
GCTCCCTATGTGATCAAGTC+AGG | 0.510268 | 7_3:-81580022 | Msa1129600:CDS |
TATACAACTATCTCAACATC+AGG | 0.514583 | 7_3:-81579960 | Msa1129600:CDS |
TATTATAAGATTAGATCAAG+TGG | 0.524639 | 7_3:-81579993 | Msa1129600:CDS |
CTTCATTTGGTTTATCGGTG+GGG | 0.530069 | 7_3:-81579409 | Msa1129600:CDS |
AGGACGAACACGATTAGGAT+TGG | 0.530654 | 7_3:+81581761 | None:intergenic |
CCTCGATGCCGATACTATTG+TGG | 0.530695 | 7_3:-81581570 | Msa1129600:CDS |
CTCGAATGGTTCTCAGTGCA+AGG | 0.544103 | 7_3:-81579599 | Msa1129600:CDS |
GTGCCTGACTTGATCACATA+GGG | 0.545198 | 7_3:+81580019 | None:intergenic |
TTCCCCGGCAAGTGATGCCG+TGG | 0.546088 | 7_3:-81579495 | Msa1129600:CDS |
GTTAGGTTTGATGGTTGTCG+GGG | 0.547123 | 7_3:-81578457 | Msa1129600:CDS |
GAAACCTGTTGATGTCTGGC+AGG | 0.547142 | 7_3:-81580441 | Msa1129600:intron |
CAGGATGTTAGGGAACAGCT+TGG | 0.547351 | 7_3:-81580289 | Msa1129600:CDS |
TAGAATAATAAAGCACAGAA+TGG | 0.551207 | 7_3:+81580193 | None:intergenic |
TAGCTCTCTTGATTGTTCCC+CGG | 0.552382 | 7_3:-81579510 | Msa1129600:CDS |
TGGAGCACCAATGGCCAACA+AGG | 0.554201 | 7_3:+81579149 | None:intergenic |
CTTTAAATAAATATATCCAA+CGG | 0.558224 | 7_3:-81582208 | Msa1129600:five_prime_UTR |
AGGCAAAGATGGAGCACCAA+TGG | 0.558429 | 7_3:+81579140 | None:intergenic |
ACATTGTATAATGCAGATGT+TGG | 0.559822 | 7_3:-81581199 | Msa1129600:CDS |
GGATGTTAGGGAACAGCTTG+GGG | 0.560129 | 7_3:-81580287 | Msa1129600:CDS |
CGTGTGATTCACTATACACT+GGG | 0.562412 | 7_3:-81580503 | Msa1129600:CDS |
TCCCTTCCTGGAACAAGAGG+CGG | 0.563395 | 7_3:-81580262 | Msa1129600:CDS |
TCTTTACATGCTCGCTAACA+AGG | 0.564106 | 7_3:-81581176 | Msa1129600:intron |
GTGTGTTGCAGGCTGATGGT+TGG | 0.566359 | 7_3:-81581809 | Msa1129600:intron |
CCGTGTGATTCACTATACAC+TGG | 0.569851 | 7_3:-81580504 | Msa1129600:CDS |
GAATCATAATCCAAAGACTC+AGG | 0.570217 | 7_3:+81579349 | None:intergenic |
CACCAGTCCCAAGGCTTAAG+GGG | 0.573084 | 7_3:+81580479 | None:intergenic |
GGTGTCAAGCAGCTCTCGAA+TGG | 0.582811 | 7_3:-81579613 | Msa1129600:CDS |
GAGTCCCTTCCTGGAACAAG+AGG | 0.585313 | 7_3:-81580265 | Msa1129600:CDS |
CATCATGTGATGCTGCTACA+TGG | 0.586772 | 7_3:-81579191 | Msa1129600:CDS |
GAAATACCGCCCAAATAGGT+AGG | 0.586979 | 7_3:+81579574 | None:intergenic |
TCCTAAAAGGACTTGATGAG+TGG | 0.590262 | 7_3:-81578377 | Msa1129600:CDS |
CCTAAAAGGACTTGATGAGT+GGG | 0.598813 | 7_3:-81578376 | Msa1129600:CDS |
GTTGAATTCCGGAGTTATGG+TGG | 0.600129 | 7_3:-81581483 | Msa1129600:CDS |
TATATCCAACGGAAACAAGA+GGG | 0.602807 | 7_3:-81582197 | Msa1129600:five_prime_UTR |
TTGTAAGATCCTCCTAAACA+AGG | 0.608903 | 7_3:+81582069 | None:intergenic |
ATCAAAAGCAAACCAGTCCA+CGG | 0.610095 | 7_3:+81579478 | None:intergenic |
AGATGCACGCACGCAGCCAG+TGG | 0.613650 | 7_3:-81582312 | Msa1129600:five_prime_UTR |
TTTCTGTTTAACGGCTGCTG+TGG | 0.614224 | 7_3:-81579545 | Msa1129600:CDS |
CAAGATGTCCACCAGTCCCA+AGG | 0.614633 | 7_3:+81580470 | None:intergenic |
AAAACTACTAAATCTTACAC+CGG | 0.615106 | 7_3:-81581416 | Msa1129600:CDS |
ATATATCCAACGGAAACAAG+AGG | 0.615931 | 7_3:-81582198 | Msa1129600:five_prime_UTR |
AAAATCAACATATGAAACAC+AGG | 0.615989 | 7_3:+81578334 | None:intergenic |
GGTGCCTGACTTGATCACAT+AGG | 0.616621 | 7_3:+81580018 | None:intergenic |
TCTGGATTTCAACTCTTCTG+GGG | 0.623762 | 7_3:+81581249 | None:intergenic |
CACCAGATCCAATAAACACA+TGG | 0.629948 | 7_3:-81581965 | Msa1129600:CDS |
ACGCAGCCAGTGGTGACCGA+AGG | 0.632731 | 7_3:-81582302 | Msa1129600:five_prime_UTR |
ATGGTACTATGGATTAGGGA+TGG | 0.639457 | 7_3:-81579172 | Msa1129600:CDS |
TGGCTCGACCACCATAACTC+CGG | 0.646787 | 7_3:+81581475 | None:intergenic |
AACCAAACAGTAGAATCAGT+TGG | 0.648274 | 7_3:-81582143 | Msa1129600:CDS |
AAGGTTCCTACCTATTTGGG+CGG | 0.652522 | 7_3:-81579580 | Msa1129600:CDS |
TTAGGTTTGATGGTTGTCGG+GGG | 0.659292 | 7_3:-81578456 | Msa1129600:CDS |
TTATCGGTGGGGAAAACATG+TGG | 0.662735 | 7_3:-81579398 | Msa1129600:CDS |
GTCCACGGCATCACTTGCCG+GGG | 0.666206 | 7_3:+81579493 | None:intergenic |
ACTACTAAATCTTACACCGG+AGG | 0.674410 | 7_3:-81581413 | Msa1129600:intron |
CAAAGACTCAGGAAGTGACG+AGG | 0.676512 | 7_3:+81579360 | None:intergenic |
CCACAATAGTATCGGCATCG+AGG | 0.695118 | 7_3:+81581570 | None:intergenic |
CCAGTGTATAGTGAATCACA+CGG | 0.701291 | 7_3:+81580504 | None:intergenic |
CTAATTTGAAGCATTCTGAG+AGG | 0.701754 | 7_3:-81581505 | Msa1129600:CDS |
ATAAGCGGTGATGTAAACGG+TGG | 0.756884 | 7_3:-81578304 | Msa1129600:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTCTTTTTTTAATTAATTAA+AGG | - | chr7_3:81578653-81578672 | Msa1129600:intron | 10.0% |
!! | GTTAAAATTACAAAAATAAA+TGG | + | chr7_3:81582044-81582063 | None:intergenic | 10.0% |
!!! | TTTATTTTTGTAATTTTAAC+AGG | - | chr7_3:81582044-81582063 | Msa1129600:CDS | 10.0% |
!! | ATATTTATTTAAAGGAAAGT+TGG | + | chr7_3:81578309-81578328 | None:intergenic | 15.0% |
!! | CTTTAAATAAATATATCCAA+CGG | - | chr7_3:81578315-81578334 | Msa1129600:three_prime_UTR | 15.0% |
!!! | TTAACTGTTTGATTTAATTA+TGG | - | chr7_3:81578686-81578705 | Msa1129600:intron | 15.0% |
!!! | TTGTTATTAATGTTGTAAAA+AGG | - | chr7_3:81580123-81580142 | Msa1129600:intron | 15.0% |
!! | TTGATCTAATCTTATAATAA+AGG | + | chr7_3:81580529-81580548 | None:intergenic | 15.0% |
!! | ACAATGTTTATTGTATTATT+TGG | - | chr7_3:81581084-81581103 | Msa1129600:intron | 15.0% |
!! | TTAATTTATACTGTATTTAC+AGG | - | chr7_3:81581292-81581311 | Msa1129600:CDS | 15.0% |
!! | TATATCGAAATTATAAAAGT+TGG | + | chr7_3:81581680-81581699 | None:intergenic | 15.0% |
!!! | TTGATTTTTGTAATAATAAG+CGG | - | chr7_3:81582204-81582223 | Msa1129600:five_prime_UTR | 15.0% |
!! | CGTTGGATATATTTATTTAA+AGG | + | chr7_3:81578317-81578336 | None:intergenic | 20.0% |
!!! | ATTGTTACCTTTTTTGTAAT+TGG | + | chr7_3:81578834-81578853 | None:intergenic | 20.0% |
!! | TACAAAAAAGGTAACAATTA+AGG | - | chr7_3:81578836-81578855 | Msa1129600:intron | 20.0% |
!!! | ATTTTTAACCACAATAGTAT+CGG | + | chr7_3:81578964-81578983 | None:intergenic | 20.0% |
!!! | ATTTTTTGAGATTGTTAGTT+TGG | - | chr7_3:81579141-81579160 | Msa1129600:CDS | 20.0% |
!!! | TTTTTTGAGATTGTTAGTTT+GGG | - | chr7_3:81579142-81579161 | Msa1129600:CDS | 20.0% |
!! | TAAGCATATAAATCATAATG+AGG | + | chr7_3:81579470-81579489 | None:intergenic | 20.0% |
!! | TAATAGTTAGAATACAGTAT+GGG | - | chr7_3:81579672-81579691 | Msa1129600:intron | 20.0% |
!! | AATGAAATAAAAATGCATGA+GGG | + | chr7_3:81579832-81579851 | None:intergenic | 20.0% |
!! | TAATGAAATAAAAATGCATG+AGG | + | chr7_3:81579833-81579852 | None:intergenic | 20.0% |
!! | AAATATATGTATATGTCTCT+CGG | - | chr7_3:81579913-81579932 | Msa1129600:intron | 20.0% |
!! | TTAGATAATCTGAATTGAAA+AGG | + | chr7_3:81579943-81579962 | None:intergenic | 20.0% |
!! | TATTATAAGATTAGATCAAG+TGG | - | chr7_3:81580530-81580549 | Msa1129600:CDS | 20.0% |
!! | ATGTTTATTGTATTATTTGG+AGG | - | chr7_3:81581087-81581106 | Msa1129600:intron | 20.0% |
!!! | AAATACTTCAAACCTTTTTT+TGG | - | chr7_3:81581504-81581523 | Msa1129600:CDS | 20.0% |
!!! | AATACTTCAAACCTTTTTTT+GGG | - | chr7_3:81581505-81581524 | Msa1129600:CDS | 20.0% |
!!! | CGATATATTACAGTTAATTT+TGG | - | chr7_3:81581693-81581712 | Msa1129600:intron | 20.0% |
!!! | TATATTACAGTTAATTTTGG+TGG | - | chr7_3:81581696-81581715 | Msa1129600:intron | 20.0% |
!!! | TTGTACTTTTTAATAAGTTG+TGG | - | chr7_3:81581779-81581798 | Msa1129600:CDS | 20.0% |
!!! | TTTTGTAATTTTAACAGGTT+AGG | - | chr7_3:81582049-81582068 | Msa1129600:CDS | 20.0% |
!! | TTATTCTTTCAAAATCTAGT+TGG | - | chr7_3:81582372-81582391 | Msa1129600:five_prime_UTR | 20.0% |
! | AAGAAAGAAAAATACTGACA+CGG | + | chr7_3:81578630-81578649 | None:intergenic | 25.0% |
! | AACATGACCAATTACAAAAA+AGG | - | chr7_3:81578824-81578843 | Msa1129600:intron | 25.0% |
!!! | GTTTTCTTCTTGTTGATTAT+TGG | - | chr7_3:81578894-81578913 | Msa1129600:intron | 25.0% |
!!! | TTGATGATCTTTTCAAATGT+CGG | - | chr7_3:81578985-81579004 | Msa1129600:intron | 25.0% |
! | AAAACTACTAAATCTTACAC+CGG | - | chr7_3:81579107-81579126 | Msa1129600:intron | 25.0% |
!!! | CAAAAAATTGTTTTTACCTC+CGG | + | chr7_3:81579129-81579148 | None:intergenic | 25.0% |
! | GTAATAGTTAGAATACAGTA+TGG | - | chr7_3:81579671-81579690 | Msa1129600:intron | 25.0% |
! | ATCTATATCAGTATTCTCAA+AGG | - | chr7_3:81579704-81579723 | Msa1129600:intron | 25.0% |
! | AGTATTCTCAAAGGATTTAT+CGG | - | chr7_3:81579713-81579732 | Msa1129600:intron | 25.0% |
!!! | TATCTCAGTGTCTTATTTTT+AGG | - | chr7_3:81579772-81579791 | Msa1129600:intron | 25.0% |
!!! | ATCTCAGTGTCTTATTTTTA+GGG | - | chr7_3:81579773-81579792 | Msa1129600:intron | 25.0% |
! | ATGAAATAAAAATGCATGAG+GGG | + | chr7_3:81579831-81579850 | None:intergenic | 25.0% |
! | CATTAATAACAAACCAAAAG+AGG | + | chr7_3:81580115-81580134 | None:intergenic | 25.0% |
!! | TTTTGTCACAAGATTTAACT+GGG | + | chr7_3:81580175-81580194 | None:intergenic | 25.0% |
!! | GAAAATAGTCATTAGGATTT+TGG | + | chr7_3:81580287-81580306 | None:intergenic | 25.0% |
! | TTCACAAGAAAATAGTCATT+AGG | + | chr7_3:81580294-81580313 | None:intergenic | 25.0% |
! | TAGAATAATAAAGCACAGAA+TGG | + | chr7_3:81580333-81580352 | None:intergenic | 25.0% |
!! | CATATTAAGATTTGTTTCGA+TGG | - | chr7_3:81580889-81580908 | Msa1129600:intron | 25.0% |
!! | GTTATCTTCATTTGGTTTAT+CGG | - | chr7_3:81581109-81581128 | Msa1129600:intron | 25.0% |
!!! | ATACTTCAAACCTTTTTTTG+GGG | - | chr7_3:81581506-81581525 | Msa1129600:CDS | 25.0% |
! | TTGTGATTCAACATTTAAAG+AGG | - | chr7_3:81581626-81581645 | Msa1129600:intron | 25.0% |
! | AAAATCAACATATGAAACAC+AGG | + | chr7_3:81582192-81582211 | None:intergenic | 25.0% |
! | TAGAACAACAATACAAATCT+AGG | + | chr7_3:81582276-81582295 | None:intergenic | 25.0% |
! | CTAGTTGAAGATGTAAATAA+AGG | - | chr7_3:81582293-81582312 | Msa1129600:five_prime_UTR | 25.0% |
! | ATGTATCATTGTATTTGCTT+AGG | - | chr7_3:81582327-81582346 | Msa1129600:five_prime_UTR | 25.0% |
! | GCATACGTTACTCTTTTATA+CGG | - | chr7_3:81578487-81578506 | Msa1129600:intron | 30.0% |
ATACGGAGATGAATTCTTAT+TGG | - | chr7_3:81578504-81578523 | Msa1129600:intron | 30.0% | |
TACGGAGATGAATTCTTATT+GGG | - | chr7_3:81578505-81578524 | Msa1129600:intron | 30.0% | |
CAAAACAACCATGTGTTTAT+TGG | + | chr7_3:81578569-81578588 | None:intergenic | 30.0% | |
! | CAATAAACACATGGTTGTTT+TGG | - | chr7_3:81578567-81578586 | Msa1129600:intron | 30.0% |
! | TCTTCTTGTTGATTATTGGT+TGG | - | chr7_3:81578898-81578917 | Msa1129600:intron | 30.0% |
TCGTTAAAAAGAGTTTCAGA+TGG | + | chr7_3:81579071-81579090 | None:intergenic | 30.0% | |
! | TGAAACTCTTTTTAACGACA+TGG | - | chr7_3:81579073-81579092 | Msa1129600:intron | 30.0% |
ACATTGTATAATGCAGATGT+TGG | - | chr7_3:81579324-81579343 | Msa1129600:intron | 30.0% | |
TTAAGTAATTAGAGTCACTG+AGG | - | chr7_3:81579417-81579436 | Msa1129600:CDS | 30.0% | |
GTTTAGATAGAATGTATGCT+AGG | - | chr7_3:81579500-81579519 | Msa1129600:CDS | 30.0% | |
ATTTGCCTAATGGCTAAAAA+TGG | - | chr7_3:81579577-81579596 | Msa1129600:CDS | 30.0% | |
CTAACTATTACAGACAATAC+CGG | + | chr7_3:81579662-81579681 | None:intergenic | 30.0% | |
! | CTTTTGTCACAAGATTTAAC+TGG | + | chr7_3:81580176-81580195 | None:intergenic | 30.0% |
ATAATAAAGCACAGAATGGT+AGG | + | chr7_3:81580329-81580348 | None:intergenic | 30.0% | |
CTGCTATAATTCACTTATGA+AGG | - | chr7_3:81580353-81580372 | Msa1129600:intron | 30.0% | |
ATGTGCTTAATGCTTGAAAT+TGG | + | chr7_3:81580410-81580429 | None:intergenic | 30.0% | |
ATTTCAAGCATTAAGCACAT+AGG | - | chr7_3:81580410-81580429 | Msa1129600:intron | 30.0% | |
TTTCAAGCATTAAGCACATA+GGG | - | chr7_3:81580411-81580430 | Msa1129600:intron | 30.0% | |
!! | TACTTTGGTTCATTTTGTAG+AGG | - | chr7_3:81580479-81580498 | Msa1129600:CDS | 30.0% |
GATGTTGAGATAGTTGTATA+AGG | + | chr7_3:81580563-81580582 | None:intergenic | 30.0% | |
TATACAACTATCTCAACATC+AGG | - | chr7_3:81580563-81580582 | Msa1129600:intron | 30.0% | |
TCTACCTCATCAAAATCAAA+TGG | + | chr7_3:81580674-81580693 | None:intergenic | 30.0% | |
ATGTCATGGATTCAAATAAC+AGG | - | chr7_3:81580818-81580837 | Msa1129600:intron | 30.0% | |
!! | TTCTGTCTGTTTCTGTTTAA+CGG | - | chr7_3:81580969-81580988 | Msa1129600:intron | 30.0% |
!! | GTTTGCTTTTGATGTATGAA+TGG | - | chr7_3:81581055-81581074 | Msa1129600:intron | 30.0% |
ATTTGGAGGTTATCTTCATT+TGG | - | chr7_3:81581101-81581120 | Msa1129600:intron | 30.0% | |
!!! | CAAGAGTAAAGCTTATTTTG+TGG | - | chr7_3:81581214-81581233 | Msa1129600:CDS | 30.0% |
!!! | GAATAACTGCCTTGTTTTTA+AGG | - | chr7_3:81581416-81581435 | Msa1129600:CDS | 30.0% |
AATTCGCGTTCTAATGTATT+AGG | - | chr7_3:81581440-81581459 | Msa1129600:CDS | 30.0% | |
! | GAAATTTTCACCCCAAAAAA+AGG | + | chr7_3:81581519-81581538 | None:intergenic | 30.0% |
AAAACAGTACATGTGTATAG+AGG | + | chr7_3:81581722-81581741 | None:intergenic | 30.0% | |
! | CTATACACATGTACTGTTTT+CGG | - | chr7_3:81581722-81581741 | Msa1129600:CDS | 30.0% |
CTTTCACATTACATCTCTTA+GGG | + | chr7_3:81581849-81581868 | None:intergenic | 30.0% | |
! | TTTTAACAGGTTAGGTTTGA+TGG | - | chr7_3:81582057-81582076 | Msa1129600:CDS | 30.0% |
ATAATAAGCGGTGATGTAAA+CGG | - | chr7_3:81582216-81582235 | Msa1129600:five_prime_UTR | 30.0% | |
ATATATCCAACGGAAACAAG+AGG | - | chr7_3:81578325-81578344 | Msa1129600:exon | 35.0% | |
TATATCCAACGGAAACAAGA+GGG | - | chr7_3:81578326-81578345 | Msa1129600:exon | 35.0% | |
AACCAAACAGTAGAATCAGT+TGG | - | chr7_3:81578380-81578399 | Msa1129600:CDS | 35.0% | |
! | CTTCAATTCGAACCTTGTTT+AGG | - | chr7_3:81578442-81578461 | Msa1129600:CDS | 35.0% |
TTGTAAGATCCTCCTAAACA+AGG | + | chr7_3:81578457-81578476 | None:intergenic | 35.0% | |
AACCATGTGTTTATTGGATC+TGG | + | chr7_3:81578563-81578582 | None:intergenic | 35.0% | |
! | TTATGGTTTTTGTGTGTTGC+AGG | - | chr7_3:81578703-81578722 | Msa1129600:intron | 35.0% |
! | TGTTCGTCCTAAGAGATTTT+GGG | - | chr7_3:81578775-81578794 | Msa1129600:intron | 35.0% |
TAAACACCCCAAAATCTCTT+AGG | + | chr7_3:81578785-81578804 | None:intergenic | 35.0% | |
! | CTAATTTGAAGCATTCTGAG+AGG | - | chr7_3:81579018-81579037 | Msa1129600:intron | 35.0% |
AAGAAACACAGTTGAAGACA+AGG | + | chr7_3:81579175-81579194 | None:intergenic | 35.0% | |
ATTGGGAAAGTCAGAGTAAT+AGG | + | chr7_3:81579229-81579248 | None:intergenic | 35.0% | |
ATTACTTAAGTTACGACACG+AGG | + | chr7_3:81579406-81579425 | None:intergenic | 35.0% | |
CATTAGGCAAATGTAACTGT+GGG | + | chr7_3:81579569-81579588 | None:intergenic | 35.0% | |
!!! | CAATGCCATTTTTAGCCATT+AGG | + | chr7_3:81579585-81579604 | None:intergenic | 35.0% |
ATTCTCAAAGGATTTATCGG+TGG | - | chr7_3:81579716-81579735 | Msa1129600:intron | 35.0% | |
!!! | TTATTTTTAGGGCACCTTGT+CGG | - | chr7_3:81579784-81579803 | Msa1129600:intron | 35.0% |
!!! | TTTTGAAACCTGTTGATGTC+TGG | - | chr7_3:81580078-81580097 | Msa1129600:intron | 35.0% |
TGACGTATTTCTTCTTACCT+TGG | - | chr7_3:81580201-81580220 | Msa1129600:CDS | 35.0% | |
GTATTTCTTCTTACCTTGGT+GGG | - | chr7_3:81580205-81580224 | Msa1129600:CDS | 35.0% | |
TATTTCTTCTTACCTTGGTG+GGG | - | chr7_3:81580206-81580225 | Msa1129600:CDS | 35.0% | |
GAGATAGTTGTATAAGGAAG+TGG | + | chr7_3:81580557-81580576 | None:intergenic | 35.0% | |
AGGAATCAATTCAATCCATC+AGG | - | chr7_3:81580583-81580602 | Msa1129600:intron | 35.0% | |
ATCAATTCAATCCATCAGGT+TGG | - | chr7_3:81580587-81580606 | Msa1129600:intron | 35.0% | |
! | GATGATCCAAATCTAAAACC+AGG | + | chr7_3:81580625-81580644 | None:intergenic | 35.0% |
GATTTGGATCATCTCATTTG+AGG | - | chr7_3:81580632-81580651 | Msa1129600:intron | 35.0% | |
CAAATGGCTAGATCATATGA+AGG | + | chr7_3:81580658-81580677 | None:intergenic | 35.0% | |
!! | CTAGCCATTTGATTTTGATG+AGG | - | chr7_3:81580667-81580686 | Msa1129600:intron | 35.0% |
ACTACTATCATCAAATGACC+TGG | - | chr7_3:81580784-81580803 | Msa1129600:intron | 35.0% | |
! | ATCTTCATTTGGTTTATCGG+TGG | - | chr7_3:81581112-81581131 | Msa1129600:intron | 35.0% |
! | TCTTCATTTGGTTTATCGGT+GGG | - | chr7_3:81581113-81581132 | Msa1129600:intron | 35.0% |
GAATCATAATCCAAAGACTC+AGG | + | chr7_3:81581177-81581196 | None:intergenic | 35.0% | |
GAGTCTTTGGATTATGATTC+TGG | - | chr7_3:81581177-81581196 | Msa1129600:CDS | 35.0% | |
! | CTACATGGTACTATGGATTA+GGG | - | chr7_3:81581347-81581366 | Msa1129600:intron | 35.0% |
GCAGTTATTCCAAAAAGACA+AGG | + | chr7_3:81581406-81581425 | None:intergenic | 35.0% | |
CGCGAATTACCTTAAAAACA+AGG | + | chr7_3:81581428-81581447 | None:intergenic | 35.0% | |
TCTTAGGGAATTCAAATGAG+TGG | + | chr7_3:81581834-81581853 | None:intergenic | 35.0% | |
CCTTTCACATTACATCTCTT+AGG | + | chr7_3:81581850-81581869 | None:intergenic | 35.0% | |
CCTAAGAGATGTAATGTGAA+AGG | - | chr7_3:81581847-81581866 | Msa1129600:intron | 35.0% | |
!!! | GAAAGGTTTTAAGCTTGCAT+TGG | - | chr7_3:81581864-81581883 | Msa1129600:intron | 35.0% |
!! | GTTTTAAGCTTGCATTGGAA+AGG | - | chr7_3:81581869-81581888 | Msa1129600:intron | 35.0% |
AGGCTAAAAATCAGTTTGAG+TGG | - | chr7_3:81581889-81581908 | Msa1129600:intron | 35.0% | |
AGAATTGAGAGAAAAGGGAA+AGG | + | chr7_3:81581920-81581939 | None:intergenic | 35.0% | |
CACTGAGAATTGAGAGAAAA+GGG | + | chr7_3:81581925-81581944 | None:intergenic | 35.0% | |
ACACTGAGAATTGAGAGAAA+AGG | + | chr7_3:81581926-81581945 | None:intergenic | 35.0% | |
! | CTTTGCATCAGAGATTTGTT+TGG | - | chr7_3:81582006-81582025 | Msa1129600:CDS | 35.0% |
! | ATTATCCCTCTTGTTTCCGT+TGG | + | chr7_3:81578334-81578353 | None:intergenic | 40.0% |
! | CAATTCGAACCTTGTTTAGG+AGG | - | chr7_3:81578445-81578464 | Msa1129600:CDS | 40.0% |
CACCAGATCCAATAAACACA+TGG | - | chr7_3:81578558-81578577 | Msa1129600:intron | 40.0% | |
!!! | ATGGTTGTTTTGGTCTCTGA+TGG | - | chr7_3:81578577-81578596 | Msa1129600:intron | 40.0% |
!!! | GAGAAGGTTTTTGGCGAAAT+TGG | + | chr7_3:81578608-81578627 | None:intergenic | 40.0% |
GAAAAATACTGACACGGAGA+AGG | + | chr7_3:81578624-81578643 | None:intergenic | 40.0% | |
! | GTGTTCGTCCTAAGAGATTT+TGG | - | chr7_3:81578774-81578793 | Msa1129600:intron | 40.0% |
! | GTTCGTCCTAAGAGATTTTG+GGG | - | chr7_3:81578776-81578795 | Msa1129600:intron | 40.0% |
! | CATTCTGAGAGGTTGAATTC+CGG | - | chr7_3:81579029-81579048 | Msa1129600:intron | 40.0% |
ACTACTAAATCTTACACCGG+AGG | - | chr7_3:81579110-81579129 | Msa1129600:CDS | 40.0% | |
! | ACTGTGTTTCTTCCTTTTGC+AGG | - | chr7_3:81579183-81579202 | Msa1129600:CDS | 40.0% |
GGATCAAAAACACGTGCATT+GGG | + | chr7_3:81579246-81579265 | None:intergenic | 40.0% | |
TGGATCAAAAACACGTGCAT+TGG | + | chr7_3:81579247-81579266 | None:intergenic | 40.0% | |
TCTGGATTTCAACTCTTCTG+GGG | + | chr7_3:81579277-81579296 | None:intergenic | 40.0% | |
GTCTGGATTTCAACTCTTCT+GGG | + | chr7_3:81579278-81579297 | None:intergenic | 40.0% | |
!! | GTTGATAGTCTCTCCATTTC+CGG | + | chr7_3:81579306-81579325 | None:intergenic | 40.0% |
TCTTTACATGCTCGCTAACA+AGG | - | chr7_3:81579347-81579366 | Msa1129600:CDS | 40.0% | |
GGGATTCTCTCAAACAAGTT+AGG | + | chr7_3:81579549-81579568 | None:intergenic | 40.0% | |
CCATTAGGCAAATGTAACTG+TGG | + | chr7_3:81579570-81579589 | None:intergenic | 40.0% | |
CCACAGTTACATTTGCCTAA+TGG | - | chr7_3:81579567-81579586 | Msa1129600:CDS | 40.0% | |
GTGTTCTATGTCCTATTGAC+CGG | - | chr7_3:81579640-81579659 | Msa1129600:intron | 40.0% | |
TACAGACAATACCGGTCAAT+AGG | + | chr7_3:81579654-81579673 | None:intergenic | 40.0% | |
CACTGAGATAAAATCTCCAC+AGG | + | chr7_3:81579762-81579781 | None:intergenic | 40.0% | |
CCAGTGTATAGTGAATCACA+CGG | + | chr7_3:81580022-81580041 | None:intergenic | 40.0% | |
CGTGTGATTCACTATACACT+GGG | - | chr7_3:81580020-81580039 | Msa1129600:CDS | 40.0% | |
! | GGCAGGTAATTATCCTCTTT+TGG | - | chr7_3:81580099-81580118 | Msa1129600:intron | 40.0% |
CGTATTTCTTCTTACCTTGG+TGG | - | chr7_3:81580204-81580223 | Msa1129600:CDS | 40.0% | |
ATAGGGCTTCGAATAAGTCT+TGG | - | chr7_3:81580428-81580447 | Msa1129600:intron | 40.0% | |
!! | TTGCAGAATCGAGAGTACTT+TGG | - | chr7_3:81580464-81580483 | Msa1129600:CDS | 40.0% |
!!! | CAGTCTCCTGGTTTTAGATT+TGG | - | chr7_3:81580616-81580635 | Msa1129600:intron | 40.0% |
CAAACACAACGCCTTGTATA+AGG | - | chr7_3:81580694-81580713 | Msa1129600:intron | 40.0% | |
!! | ATTTTGGGAGGCCTTATACA+AGG | + | chr7_3:81580708-81580727 | None:intergenic | 40.0% |
CTCCCAAAATCTCTTGTACA+GGG | - | chr7_3:81580718-81580737 | Msa1129600:intron | 40.0% | |
TCCTGTACATGAGAAGAACA+CGG | + | chr7_3:81580746-81580765 | None:intergenic | 40.0% | |
ATGACATGACAACATTGACC+AGG | + | chr7_3:81580805-81580824 | None:intergenic | 40.0% | |
TGGTCAATGTTGTCATGTCA+TGG | - | chr7_3:81580804-81580823 | Msa1129600:intron | 40.0% | |
AAGTATGCAAGTCCAACTAG+AGG | + | chr7_3:81580852-81580871 | None:intergenic | 40.0% | |
TGCAAGGTTCCTACCTATTT+GGG | - | chr7_3:81580940-81580959 | Msa1129600:intron | 40.0% | |
ATCAAAAGCAAACCAGTCCA+CGG | + | chr7_3:81581048-81581067 | None:intergenic | 40.0% | |
! | CTTCATTTGGTTTATCGGTG+GGG | - | chr7_3:81581114-81581133 | Msa1129600:intron | 40.0% |
GCTACATGGTACTATGGATT+AGG | - | chr7_3:81581346-81581365 | Msa1129600:intron | 40.0% | |
!! | ATGGTACTATGGATTAGGGA+TGG | - | chr7_3:81581351-81581370 | Msa1129600:intron | 40.0% |
CCAAAAAGACAAGGCAAAGA+TGG | + | chr7_3:81581397-81581416 | None:intergenic | 40.0% | |
! | CCATCTTTGCCTTGTCTTTT+TGG | - | chr7_3:81581394-81581413 | Msa1129600:intron | 40.0% |
GTCTACTCTGATGTGATTCT+AGG | + | chr7_3:81581956-81581975 | None:intergenic | 40.0% | |
! | AGGTTAGGTTTGATGGTTGT+CGG | - | chr7_3:81582064-81582083 | Msa1129600:CDS | 40.0% |
! | CTTCTGAACATCTTGCTATC+CGG | - | chr7_3:81582119-81582138 | Msa1129600:CDS | 40.0% |
!! | CAAGTCCTTTTAGGAATGAC+CGG | + | chr7_3:81582141-81582160 | None:intergenic | 40.0% |
TCCTAAAAGGACTTGATGAG+TGG | - | chr7_3:81582146-81582165 | Msa1129600:CDS | 40.0% | |
CCTAAAAGGACTTGATGAGT+GGG | - | chr7_3:81582147-81582166 | Msa1129600:CDS | 40.0% | |
AGTGGGATATTGCTCCAAAT+AGG | - | chr7_3:81582164-81582183 | Msa1129600:exon | 40.0% | |
ATGAAACACAGGCTCCTATT+TGG | + | chr7_3:81582181-81582200 | None:intergenic | 40.0% | |
TTTCAGTCGTCTCTGACCTT+CGG | + | chr7_3:81578240-81578259 | None:intergenic | 45.0% | |
! | CGCCAACTGATTCTACTGTT+TGG | + | chr7_3:81578385-81578404 | None:intergenic | 45.0% |
TTATTGGGCGTTCGTGTTCT+CGG | - | chr7_3:81578520-81578539 | Msa1129600:intron | 45.0% | |
! | ACTGACACGGAGAAGGTTTT+TGG | + | chr7_3:81578617-81578636 | None:intergenic | 45.0% |
! | TTTTGTGTGTTGCAGGCTGA+TGG | - | chr7_3:81578710-81578729 | Msa1129600:intron | 45.0% |
AGGACGAACACGATTAGGAT+TGG | + | chr7_3:81578765-81578784 | None:intergenic | 45.0% | |
CTCTTAGGACGAACACGATT+AGG | + | chr7_3:81578770-81578789 | None:intergenic | 45.0% | |
GAGGTTGAATTCCGGAGTTA+TGG | - | chr7_3:81579037-81579056 | Msa1129600:intron | 45.0% | |
GTTGAATTCCGGAGTTATGG+TGG | - | chr7_3:81579040-81579059 | Msa1129600:intron | 45.0% | |
! | TCTTCCTTTTGCAGGAGATC+AGG | - | chr7_3:81579191-81579210 | Msa1129600:CDS | 45.0% |
! | CTTCCTTTTGCAGGAGATCA+GGG | - | chr7_3:81579192-81579211 | Msa1129600:CDS | 45.0% |
AATCCCTGATCTCCTGCAAA+AGG | + | chr7_3:81579198-81579217 | None:intergenic | 45.0% | |
! | AACTCTTCTGGGGACAAGTT+TGG | + | chr7_3:81579267-81579286 | None:intergenic | 45.0% |
GGTCTGGATTTCAACTCTTC+TGG | + | chr7_3:81579279-81579298 | None:intergenic | 45.0% | |
GTTGAAATCCAGACCTGTTC+CGG | - | chr7_3:81579284-81579303 | Msa1129600:intron | 45.0% | |
ACATGCTCGCTAACAAGGTA+CGG | - | chr7_3:81579352-81579371 | Msa1129600:CDS | 45.0% | |
GCTAACAAGGTACGGAGTAT+AGG | - | chr7_3:81579360-81579379 | Msa1129600:CDS | 45.0% | |
!! | TACGGAGTATAGGTACTGAG+AGG | - | chr7_3:81579370-81579389 | Msa1129600:CDS | 45.0% |
!! | GAGTATAGGTACTGAGAGGA+TGG | - | chr7_3:81579374-81579393 | Msa1129600:CDS | 45.0% |
GTTCATGCTGATCTATCCAG+TGG | - | chr7_3:81579976-81579995 | Msa1129600:CDS | 45.0% | |
ATGCTGATCTATCCAGTGGA+TGG | - | chr7_3:81579980-81579999 | Msa1129600:CDS | 45.0% | |
CTTTCTCATCTACCATCCAC+TGG | + | chr7_3:81579995-81580014 | None:intergenic | 45.0% | |
CCGTGTGATTCACTATACAC+TGG | - | chr7_3:81580019-81580038 | Msa1129600:CDS | 45.0% | |
ATTACCTGCCAGACATCAAC+AGG | + | chr7_3:81580089-81580108 | None:intergenic | 45.0% | |
CTGGGTAGACATGATTGCTT+CGG | + | chr7_3:81580157-81580176 | None:intergenic | 45.0% | |
TGGGGTTCTTCAGGATGTTA+GGG | - | chr7_3:81580224-81580243 | Msa1129600:CDS | 45.0% | |
AGGATGTTAGGGAACAGCTT+GGG | - | chr7_3:81580235-81580254 | Msa1129600:CDS | 45.0% | |
! | GTGCCTGACTTGATCACATA+GGG | + | chr7_3:81580507-81580526 | None:intergenic | 45.0% |
GACTGAGAAAACCAACCTGA+TGG | + | chr7_3:81580601-81580620 | None:intergenic | 45.0% | |
! | CCTGTACAAGAGATTTTGGG+AGG | + | chr7_3:81580720-81580739 | None:intergenic | 45.0% |
CCTCCCAAAATCTCTTGTAC+AGG | - | chr7_3:81580717-81580736 | Msa1129600:intron | 45.0% | |
! | GGCCCTGTACAAGAGATTTT+GGG | + | chr7_3:81580723-81580742 | None:intergenic | 45.0% |
CTGTACATGAGAAGAACACG+GGG | + | chr7_3:81580744-81580763 | None:intergenic | 45.0% | |
CCTGTACATGAGAAGAACAC+GGG | + | chr7_3:81580745-81580764 | None:intergenic | 45.0% | |
CAGGATGCATAACCTCTAGT+TGG | - | chr7_3:81580837-81580856 | Msa1129600:intron | 45.0% | |
GTGCAAGGTTCCTACCTATT+TGG | - | chr7_3:81580939-81580958 | Msa1129600:intron | 45.0% | |
AAGGTTCCTACCTATTTGGG+CGG | - | chr7_3:81580943-81580962 | Msa1129600:intron | 45.0% | |
GAAATACCGCCCAAATAGGT+AGG | + | chr7_3:81580952-81580971 | None:intergenic | 45.0% | |
GACAGAAATACCGCCCAAAT+AGG | + | chr7_3:81580956-81580975 | None:intergenic | 45.0% | |
TTTCTGTTTAACGGCTGCTG+TGG | - | chr7_3:81580978-81580997 | Msa1129600:intron | 45.0% | |
TAGCTCTCTTGATTGTTCCC+CGG | - | chr7_3:81581013-81581032 | Msa1129600:intron | 45.0% | |
TTATCGGTGGGGAAAACATG+TGG | - | chr7_3:81581125-81581144 | Msa1129600:intron | 45.0% | |
CATCATGTGATGCTGCTACA+TGG | - | chr7_3:81581332-81581351 | Msa1129600:intron | 45.0% | |
GATGCTGCTACATGGTACTA+TGG | - | chr7_3:81581340-81581359 | Msa1129600:intron | 45.0% | |
TGGGGTGAAAATTTCATCCG+TGG | - | chr7_3:81581524-81581543 | Msa1129600:CDS | 45.0% | |
TTCATCCGTGGTTCCAAAAG+TGG | - | chr7_3:81581536-81581555 | Msa1129600:CDS | 45.0% | |
!!! | AAGAGCCACTTTTGGAACCA+CGG | + | chr7_3:81581544-81581563 | None:intergenic | 45.0% |
!! | TGGCAACAAAGAGCCACTTT+TGG | + | chr7_3:81581552-81581571 | None:intergenic | 45.0% |
TGCCAGTGCATGTCTGTTAT+CGG | - | chr7_3:81581567-81581586 | Msa1129600:CDS | 45.0% | |
! | GGTTAGGTTTGATGGTTGTC+GGG | - | chr7_3:81582065-81582084 | Msa1129600:CDS | 45.0% |
! | GTTAGGTTTGATGGTTGTCG+GGG | - | chr7_3:81582066-81582085 | Msa1129600:CDS | 45.0% |
! | TTAGGTTTGATGGTTGTCGG+GGG | - | chr7_3:81582067-81582086 | Msa1129600:CDS | 45.0% |
GCTATCCGGTCATTCCTAAA+AGG | - | chr7_3:81582133-81582152 | Msa1129600:CDS | 45.0% | |
! | CCCACTCATCAAGTCCTTTT+AGG | + | chr7_3:81582150-81582169 | None:intergenic | 45.0% |
ATAAGCGGTGATGTAAACGG+TGG | - | chr7_3:81582219-81582238 | Msa1129600:five_prime_UTR | 45.0% | |
!!! | AAAATAATAAAATTTTAACA+TGG | - | chr7_3:81581653-81581672 | Msa1129600:intron | 5.0% |
!! | ATTGGATCTGGTGTCGCGTA+TGG | + | chr7_3:81578551-81578570 | None:intergenic | 50.0% |
!! | CCACAATAGTATCGGCATCG+AGG | + | chr7_3:81578956-81578975 | None:intergenic | 50.0% |
CCTCGATGCCGATACTATTG+TGG | - | chr7_3:81578953-81578972 | Msa1129600:intron | 50.0% | |
ATCCAGACCTGTTCCGGAAA+TGG | - | chr7_3:81579290-81579309 | Msa1129600:intron | 50.0% | |
AGTCTCTCCATTTCCGGAAC+AGG | + | chr7_3:81579300-81579319 | None:intergenic | 50.0% | |
GTGAGTAGCACAGATTCCTG+TGG | - | chr7_3:81579743-81579762 | Msa1129600:intron | 50.0% | |
ACTCGACAGCAATTCCGACA+AGG | + | chr7_3:81579801-81579820 | None:intergenic | 50.0% | |
GAAACCTGTTGATGTCTGGC+AGG | - | chr7_3:81580082-81580101 | Msa1129600:intron | 50.0% | |
TTACCTTGGTGGGGTTCTTC+AGG | - | chr7_3:81580215-81580234 | Msa1129600:CDS | 50.0% | |
GTGGGGTTCTTCAGGATGTT+AGG | - | chr7_3:81580223-81580242 | Msa1129600:CDS | 50.0% | |
CAGGATGTTAGGGAACAGCT+TGG | - | chr7_3:81580234-81580253 | Msa1129600:CDS | 50.0% | |
GGATGTTAGGGAACAGCTTG+GGG | - | chr7_3:81580236-81580255 | Msa1129600:CDS | 50.0% | |
GCTCCCTATGTGATCAAGTC+AGG | - | chr7_3:81580501-81580520 | Msa1129600:CDS | 50.0% | |
! | GGTGCCTGACTTGATCACAT+AGG | + | chr7_3:81580508-81580527 | None:intergenic | 50.0% |
!!! | GGTTGGTTTTCTCAGTCTCC+TGG | - | chr7_3:81580604-81580623 | Msa1129600:intron | 50.0% |
! | GGGCCCTGTACAAGAGATTT+TGG | + | chr7_3:81580724-81580743 | None:intergenic | 50.0% |
CCCGTGTTCTTCTCATGTAC+AGG | - | chr7_3:81580742-81580761 | Msa1129600:intron | 50.0% | |
CTCGAATGGTTCTCAGTGCA+AGG | - | chr7_3:81580924-81580943 | Msa1129600:intron | 50.0% | |
CAAAGACTCAGGAAGTGACG+AGG | + | chr7_3:81581166-81581185 | None:intergenic | 50.0% | |
CTCGTCACTTCCTGAGTCTT+TGG | - | chr7_3:81581164-81581183 | Msa1129600:intron | 50.0% | |
!! | TGGATTAGGGATGGCCTTGT+TGG | - | chr7_3:81581360-81581379 | Msa1129600:intron | 50.0% |
! | AGGCAAAGATGGAGCACCAA+TGG | + | chr7_3:81581386-81581405 | None:intergenic | 50.0% |
AGCCGATAACAGACATGCAC+TGG | + | chr7_3:81581572-81581591 | None:intergenic | 50.0% | |
GTGTGTTGCAGGCTGATGGT+TGG | - | chr7_3:81578714-81578733 | Msa1129600:intron | 55.0% | |
TGGCTCGACCACCATAACTC+CGG | + | chr7_3:81579051-81579070 | None:intergenic | 55.0% | |
CTCCATTTCCGGAACAGGTC+TGG | + | chr7_3:81579295-81579314 | None:intergenic | 55.0% | |
ACTGGGACCCCTTAAGCCTT+GGG | - | chr7_3:81580037-81580056 | Msa1129600:CDS | 55.0% | |
CACCAGTCCCAAGGCTTAAG+GGG | + | chr7_3:81580047-81580066 | None:intergenic | 55.0% | |
CCACCAGTCCCAAGGCTTAA+GGG | + | chr7_3:81580048-81580067 | None:intergenic | 55.0% | |
TCCACCAGTCCCAAGGCTTA+AGG | + | chr7_3:81580049-81580068 | None:intergenic | 55.0% | |
CAAGATGTCCACCAGTCCCA+AGG | + | chr7_3:81580056-81580075 | None:intergenic | 55.0% | |
! | CTTGGGACTGGTGGACATCT+TGG | - | chr7_3:81580054-81580073 | Msa1129600:CDS | 55.0% |
CATCCTGAAGAACCCCACCA+AGG | + | chr7_3:81580221-81580240 | None:intergenic | 55.0% | |
GAGTCCCTTCCTGGAACAAG+AGG | - | chr7_3:81580258-81580277 | Msa1129600:CDS | 55.0% | |
TCCCTTCCTGGAACAAGAGG+CGG | - | chr7_3:81580261-81580280 | Msa1129600:CDS | 55.0% | |
! | TTTTGGCCGCCTCTTGTTCC+AGG | + | chr7_3:81580270-81580289 | None:intergenic | 55.0% |
GGTGTCAAGCAGCTCTCGAA+TGG | - | chr7_3:81580910-81580929 | Msa1129600:intron | 55.0% | |
! | TGGAGCACCAATGGCCAACA+AGG | + | chr7_3:81581377-81581396 | None:intergenic | 55.0% |
!! | GGTTGTCGGGGGCATCATAT+TGG | - | chr7_3:81582078-81582097 | Msa1129600:CDS | 55.0% |
CTCTGACCTTCGGTCACCAC+TGG | + | chr7_3:81578230-81578249 | None:intergenic | 60.0% | |
CACTGGGACCCCTTAAGCCT+TGG | - | chr7_3:81580036-81580055 | Msa1129600:CDS | 60.0% | |
GACCCCTTAAGCCTTGGGAC+TGG | - | chr7_3:81580042-81580061 | Msa1129600:CDS | 60.0% | |
CCCTTAAGCCTTGGGACTGG+TGG | - | chr7_3:81580045-81580064 | Msa1129600:CDS | 60.0% | |
GCCGCCTCTTGTTCCAGGAA+GGG | + | chr7_3:81580265-81580284 | None:intergenic | 60.0% | |
ACGGCTGCTGTGGTGTCTCT+TGG | - | chr7_3:81580988-81581007 | Msa1129600:intron | 60.0% | |
AGTCCACGGCATCACTTGCC+GGG | + | chr7_3:81581034-81581053 | None:intergenic | 60.0% | |
CAGTCCACGGCATCACTTGC+CGG | + | chr7_3:81581035-81581054 | None:intergenic | 60.0% | |
!! | GGGATGGCCTTGTTGGCCAT+TGG | - | chr7_3:81581367-81581386 | Msa1129600:intron | 60.0% |
AGATGCACGCACGCAGCCAG+TGG | - | chr7_3:81578211-81578230 | Msa1129600:three_prime_UTR | 65.0% | |
ACGCAGCCAGTGGTGACCGA+AGG | - | chr7_3:81578221-81578240 | Msa1129600:three_prime_UTR | 65.0% | |
CAGCTTGGGGAGTCCCTTCC+TGG | - | chr7_3:81580249-81580268 | Msa1129600:CDS | 65.0% | |
GGCCGCCTCTTGTTCCAGGA+AGG | + | chr7_3:81580266-81580285 | None:intergenic | 65.0% | |
TTCCCCGGCAAGTGATGCCG+TGG | - | chr7_3:81581028-81581047 | Msa1129600:intron | 65.0% | |
GTCCACGGCATCACTTGCCG+GGG | + | chr7_3:81581033-81581052 | None:intergenic | 65.0% | |
CGGCAAGTGATGCCGTGGAC+TGG | - | chr7_3:81581033-81581052 | Msa1129600:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_3 | gene | 81578140 | 81582405 | 81578140 | ID=Msa1129600;Name=Msa1129600 |
chr7_3 | mRNA | 81578140 | 81582405 | 81578140 | ID=Msa1129600-mRNA-1;Parent=Msa1129600;Name=Msa1129600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=236|0.88|0.9|1|1|1|10|198|559 |
chr7_3 | exon | 81578140 | 81578479 | 81578140 | ID=Msa1129600-mRNA-1:exon:23764;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81579108 | 81579231 | 81579108 | ID=Msa1129600-mRNA-1:exon:23763;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81579341 | 81579647 | 81579341 | ID=Msa1129600-mRNA-1:exon:23762;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81579941 | 81580075 | 81579941 | ID=Msa1129600-mRNA-1:exon:23761;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81580171 | 81580308 | 81580171 | ID=Msa1129600-mRNA-1:exon:23760;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81580442 | 81580549 | 81580442 | ID=Msa1129600-mRNA-1:exon:23759;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81581177 | 81581340 | 81581177 | ID=Msa1129600-mRNA-1:exon:23758;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81581414 | 81581599 | 81581414 | ID=Msa1129600-mRNA-1:exon:23757;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81581700 | 81581820 | 81581700 | ID=Msa1129600-mRNA-1:exon:23756;Parent=Msa1129600-mRNA-1 |
chr7_3 | exon | 81581915 | 81582405 | 81581915 | ID=Msa1129600-mRNA-1:exon:23755;Parent=Msa1129600-mRNA-1 |
chr7_3 | five_prime_UTR | 81582170 | 81582405 | 81582170 | ID=Msa1129600-mRNA-1:five_prime_utr;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81581915 | 81582169 | 81581915 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81581700 | 81581820 | 81581700 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81581414 | 81581599 | 81581414 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81581177 | 81581340 | 81581177 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81580442 | 81580549 | 81580442 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81580171 | 81580308 | 81580171 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81579941 | 81580075 | 81579941 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81579341 | 81579647 | 81579341 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81579108 | 81579231 | 81579108 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | CDS | 81578338 | 81578479 | 81578338 | ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1 |
chr7_3 | three_prime_UTR | 81578140 | 81578337 | 81578140 | ID=Msa1129600-mRNA-1:three_prime_utr;Parent=Msa1129600-mRNA-1 |
Gene Sequence |
Protein sequence |