AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129600 MtrunA17_Chr7g0274421 93.381 559 27 2 1 559 1 549 0.0 1058
Msa1129600 MtrunA17_Chr1g0190421 77.505 529 110 2 32 559 21 541 0.0 837
Msa1129600 MtrunA17_Chr5g0399211 32.700 263 159 8 33 283 47 303 1.65e-32 130
Msa1129600 MtrunA17_Chr4g0056181 30.916 262 163 8 34 283 35 290 2.91e-28 118
Msa1129600 MtrunA17_Chr3g0129911 34.969 163 105 1 37 198 305 467 2.66e-26 113
Msa1129600 MtrunA17_Chr1g0159301 34.731 167 104 4 35 198 311 475 9.46e-26 111
Msa1129600 MtrunA17_Chr7g0272921 35.714 168 101 2 38 198 270 437 5.96e-24 105
Msa1129600 MtrunA17_Chr1g0153481 31.707 164 111 1 35 197 299 462 1.82e-23 104
Msa1129600 MtrunA17_Chr1g0153471 31.098 164 112 1 35 197 295 458 4.24e-23 103
Msa1129600 MtrunA17_Chr1g0191821 34.337 166 104 2 38 198 267 432 4.82e-23 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129600 AT5G18480.1 65.642 553 164 7 11 559 7 537 0.0 676
Msa1129600 AT1G77130.1 32.051 234 135 6 35 263 283 497 6.71e-28 118
Msa1129600 AT1G08990.1 41.358 162 92 3 38 197 279 439 8.17e-28 118
Msa1129600 AT3G18660.2 33.333 183 119 2 17 198 304 484 4.04e-27 116
Msa1129600 AT3G18660.3 33.333 183 119 2 17 198 299 479 4.48e-27 116
Msa1129600 AT3G18660.1 33.333 183 119 2 17 198 300 480 4.61e-27 116
Msa1129600 AT4G16600.1 31.801 261 161 9 34 282 56 311 9.65e-27 114
Msa1129600 AT2G35710.1 31.034 261 162 8 34 282 60 314 3.00e-26 112
Msa1129600 AT2G35710.4 31.034 261 162 8 34 282 60 314 4.35e-26 109
Msa1129600 AT1G54940.1 36.646 161 101 1 38 197 272 432 5.34e-24 106
Msa1129600 AT4G33330.1 33.537 164 108 1 35 197 299 462 2.64e-22 101
Msa1129600 AT4G33330.4 33.537 164 108 1 35 197 310 473 2.92e-22 101
Msa1129600 AT4G33330.2 33.537 164 108 1 35 197 299 462 3.42e-22 101
Msa1129600 AT4G33330.5 33.537 164 108 1 35 197 231 394 3.94e-22 100
Msa1129600 AT2G35710.2 32.178 202 125 6 87 282 11 206 3.81e-21 96.3
Msa1129600 AT4G33330.3 33.544 158 104 1 35 191 310 467 5.66e-21 96.7
Msa1129600 AT1G60450.1 25.556 270 137 8 35 263 18 264 1.18e-16 82.0
Msa1129600 AT1G60470.1 26.217 267 133 11 38 263 24 267 2.64e-14 74.7
Msa1129600 AT1G56600.1 24.823 282 140 9 27 263 12 266 9.41e-13 70.1
Msa1129600 AT1G09350.1 26.259 278 132 10 32 263 10 260 1.42e-12 69.7

Find 145 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGTTTATTGTATTATT+TGG 0.112274 7_3:-81579439 Msa1129600:CDS
GAAAATAGTCATTAGGATTT+TGG 0.140955 7_3:+81580239 None:intergenic
CGTTGGATATATTTATTTAA+AGG 0.166832 7_3:+81582209 None:intergenic
CAAAACAACCATGTGTTTAT+TGG 0.172219 7_3:+81581957 None:intergenic
CTCGTCACTTCCTGAGTCTT+TGG 0.182248 7_3:-81579359 Msa1129600:CDS
GAGTCTTTGGATTATGATTC+TGG 0.187029 7_3:-81579346 Msa1129600:CDS
GTGTTCGTCCTAAGAGATTT+TGG 0.201254 7_3:-81581749 Msa1129600:CDS
GGTCTGGATTTCAACTCTTC+TGG 0.218207 7_3:+81581247 None:intergenic
GTGGGGTTCTTCAGGATGTT+AGG 0.229561 7_3:-81580300 Msa1129600:intron
GTTGATAGTCTCTCCATTTC+CGG 0.233884 7_3:+81581220 None:intergenic
GTGCAAGGTTCCTACCTATT+TGG 0.237507 7_3:-81579584 Msa1129600:CDS
TTCTGTCTGTTTCTGTTTAA+CGG 0.247943 7_3:-81579554 Msa1129600:CDS
CAGCTTGGGGAGTCCCTTCC+TGG 0.263990 7_3:-81580274 Msa1129600:CDS
ATACGGAGATGAATTCTTAT+TGG 0.271311 7_3:-81582019 Msa1129600:CDS
CAATAAACACATGGTTGTTT+TGG 0.272587 7_3:-81581956 Msa1129600:CDS
AACTCTTCTGGGGACAAGTT+TGG 0.282864 7_3:+81581259 None:intergenic
GTTATCTTCATTTGGTTTAT+CGG 0.283666 7_3:-81579414 Msa1129600:CDS
ATGAAACACAGGCTCCTATT+TGG 0.301950 7_3:+81578345 None:intergenic
CTTCAATTCGAACCTTGTTT+AGG 0.314665 7_3:-81582081 Msa1129600:CDS
ATTTGGAGGTTATCTTCATT+TGG 0.317707 7_3:-81579422 Msa1129600:CDS
GCTATCCGGTCATTCCTAAA+AGG 0.323926 7_3:-81578390 Msa1129600:CDS
GCTACATGGTACTATGGATT+AGG 0.324256 7_3:-81579177 Msa1129600:CDS
CTCCATTTCCGGAACAGGTC+TGG 0.335358 7_3:+81581231 None:intergenic
TGCAAGGTTCCTACCTATTT+GGG 0.337684 7_3:-81579583 Msa1129600:CDS
TTGATCTAATCTTATAATAA+AGG 0.339906 7_3:+81579997 None:intergenic
TACGGAGATGAATTCTTATT+GGG 0.349527 7_3:-81582018 Msa1129600:CDS
TTCACAAGAAAATAGTCATT+AGG 0.353485 7_3:+81580232 None:intergenic
TTATTGGGCGTTCGTGTTCT+CGG 0.354632 7_3:-81582003 Msa1129600:CDS
CTTGGGACTGGTGGACATCT+TGG 0.360363 7_3:-81580469 Msa1129600:CDS
CGCCAACTGATTCTACTGTT+TGG 0.368147 7_3:+81582141 None:intergenic
GGTTAGGTTTGATGGTTGTC+GGG 0.371768 7_3:-81578458 Msa1129600:CDS
CTCTTAGGACGAACACGATT+AGG 0.374110 7_3:+81581756 None:intergenic
CAGTCCACGGCATCACTTGC+CGG 0.376274 7_3:+81579491 None:intergenic
ATCCAGACCTGTTCCGGAAA+TGG 0.383357 7_3:-81581233 Msa1129600:CDS
GTTGAAATCCAGACCTGTTC+CGG 0.386303 7_3:-81581239 Msa1129600:CDS
ACGGCTGCTGTGGTGTCTCT+TGG 0.387385 7_3:-81579535 Msa1129600:CDS
CCACCAGTCCCAAGGCTTAA+GGG 0.387655 7_3:+81580478 None:intergenic
AGGTTAGGTTTGATGGTTGT+CGG 0.394243 7_3:-81578459 Msa1129600:CDS
GTCTGGATTTCAACTCTTCT+GGG 0.395720 7_3:+81581248 None:intergenic
TAGAACAACAATACAAATCT+AGG 0.397919 7_3:+81578250 None:intergenic
ATTGGGAAAGTCAGAGTAAT+AGG 0.399496 7_3:+81581297 None:intergenic
AGTCTCTCCATTTCCGGAAC+AGG 0.401528 7_3:+81581226 None:intergenic
TAAACACCCCAAAATCTCTT+AGG 0.401974 7_3:+81581741 None:intergenic
CTAGTTGAAGATGTAAATAA+AGG 0.402579 7_3:-81578230 Msa1129600:three_prime_UTR
GACAGAAATACCGCCCAAAT+AGG 0.402864 7_3:+81579570 None:intergenic
AGGATGTTAGGGAACAGCTT+GGG 0.405735 7_3:-81580288 Msa1129600:CDS
TCCACCAGTCCCAAGGCTTA+AGG 0.409126 7_3:+81580477 None:intergenic
TTTCAGTCGTCTCTGACCTT+CGG 0.409977 7_3:+81582286 None:intergenic
ATTACCTGCCAGACATCAAC+AGG 0.412860 7_3:+81580437 None:intergenic
ATGTATCATTGTATTTGCTT+AGG 0.416458 7_3:-81578196 Msa1129600:three_prime_UTR
CTACATGGTACTATGGATTA+GGG 0.418213 7_3:-81579176 Msa1129600:CDS
TGGATTAGGGATGGCCTTGT+TGG 0.421428 7_3:-81579163 Msa1129600:CDS
TGGGGTTCTTCAGGATGTTA+GGG 0.430964 7_3:-81580299 Msa1129600:intron
ATTATCCCTCTTGTTTCCGT+TGG 0.431578 7_3:+81582192 None:intergenic
ATATTTATTTAAAGGAAAGT+TGG 0.431720 7_3:+81582217 None:intergenic
CTCTGACCTTCGGTCACCAC+TGG 0.435511 7_3:+81582296 None:intergenic
AACCATGTGTTTATTGGATC+TGG 0.436495 7_3:+81581963 None:intergenic
CATTCTGAGAGGTTGAATTC+CGG 0.440137 7_3:-81581494 Msa1129600:CDS
TTATTCTTTCAAAATCTAGT+TGG 0.442653 7_3:-81578151 Msa1129600:three_prime_UTR
CACTGGGACCCCTTAAGCCT+TGG 0.445458 7_3:-81580487 Msa1129600:CDS
AGTCCACGGCATCACTTGCC+GGG 0.455569 7_3:+81579492 None:intergenic
AGTGGGATATTGCTCCAAAT+AGG 0.456014 7_3:-81578359 Msa1129600:CDS
GATGCTGCTACATGGTACTA+TGG 0.457667 7_3:-81579183 Msa1129600:CDS
ATTGGATCTGGTGTCGCGTA+TGG 0.460416 7_3:+81581975 None:intergenic
CGGCAAGTGATGCCGTGGAC+TGG 0.461514 7_3:-81579490 Msa1129600:CDS
TCTTCATTTGGTTTATCGGT+GGG 0.463764 7_3:-81579410 Msa1129600:CDS
CTGCTATAATTCACTTATGA+AGG 0.468846 7_3:-81580170 Msa1129600:intron
GATGTTGAGATAGTTGTATA+AGG 0.472611 7_3:+81579963 None:intergenic
ATGTTTATTGTATTATTTGG+AGG 0.476336 7_3:-81579436 Msa1129600:CDS
CAATTCGAACCTTGTTTAGG+AGG 0.477001 7_3:-81582078 Msa1129600:CDS
CATATTAAGATTTGTTTCGA+TGG 0.477072 7_3:-81579634 Msa1129600:intron
GCCGCCTCTTGTTCCAGGAA+GGG 0.477864 7_3:+81580261 None:intergenic
CTTCTGAACATCTTGCTATC+CGG 0.479536 7_3:-81578404 Msa1129600:CDS
GAGGTTGAATTCCGGAGTTA+TGG 0.484212 7_3:-81581486 Msa1129600:CDS
ATCTTCATTTGGTTTATCGG+TGG 0.485026 7_3:-81579411 Msa1129600:CDS
AGGAATCAATTCAATCCATC+AGG 0.487708 7_3:-81579940 Msa1129600:intron
GGGATGGCCTTGTTGGCCAT+TGG 0.489010 7_3:-81579156 Msa1129600:CDS
GACCCCTTAAGCCTTGGGAC+TGG 0.492980 7_3:-81580481 Msa1129600:CDS
ATAATAAGCGGTGATGTAAA+CGG 0.494535 7_3:-81578307 Msa1129600:three_prime_UTR
ATAATAAAGCACAGAATGGT+AGG 0.502328 7_3:+81580197 None:intergenic
TTGCAGAATCGAGAGTACTT+TGG 0.502931 7_3:-81580059 Msa1129600:intron
GAGATAGTTGTATAAGGAAG+TGG 0.503037 7_3:+81579969 None:intergenic
GGCCGCCTCTTGTTCCAGGA+AGG 0.503271 7_3:+81580260 None:intergenic
ACTGGGACCCCTTAAGCCTT+GGG 0.507201 7_3:-81580486 Msa1129600:CDS
CCCTTAAGCCTTGGGACTGG+TGG 0.507393 7_3:-81580478 Msa1129600:CDS
AGGCACAATTCTGTCGGGTA+AGG 0.509918 7_3:+81578128 None:intergenic
GCTCCCTATGTGATCAAGTC+AGG 0.510268 7_3:-81580022 Msa1129600:CDS
TATACAACTATCTCAACATC+AGG 0.514583 7_3:-81579960 Msa1129600:CDS
TATTATAAGATTAGATCAAG+TGG 0.524639 7_3:-81579993 Msa1129600:CDS
CTTCATTTGGTTTATCGGTG+GGG 0.530069 7_3:-81579409 Msa1129600:CDS
AGGACGAACACGATTAGGAT+TGG 0.530654 7_3:+81581761 None:intergenic
CCTCGATGCCGATACTATTG+TGG 0.530695 7_3:-81581570 Msa1129600:CDS
CTCGAATGGTTCTCAGTGCA+AGG 0.544103 7_3:-81579599 Msa1129600:CDS
GTGCCTGACTTGATCACATA+GGG 0.545198 7_3:+81580019 None:intergenic
TTCCCCGGCAAGTGATGCCG+TGG 0.546088 7_3:-81579495 Msa1129600:CDS
GTTAGGTTTGATGGTTGTCG+GGG 0.547123 7_3:-81578457 Msa1129600:CDS
GAAACCTGTTGATGTCTGGC+AGG 0.547142 7_3:-81580441 Msa1129600:intron
CAGGATGTTAGGGAACAGCT+TGG 0.547351 7_3:-81580289 Msa1129600:CDS
TAGAATAATAAAGCACAGAA+TGG 0.551207 7_3:+81580193 None:intergenic
TAGCTCTCTTGATTGTTCCC+CGG 0.552382 7_3:-81579510 Msa1129600:CDS
TGGAGCACCAATGGCCAACA+AGG 0.554201 7_3:+81579149 None:intergenic
CTTTAAATAAATATATCCAA+CGG 0.558224 7_3:-81582208 Msa1129600:five_prime_UTR
AGGCAAAGATGGAGCACCAA+TGG 0.558429 7_3:+81579140 None:intergenic
ACATTGTATAATGCAGATGT+TGG 0.559822 7_3:-81581199 Msa1129600:CDS
GGATGTTAGGGAACAGCTTG+GGG 0.560129 7_3:-81580287 Msa1129600:CDS
CGTGTGATTCACTATACACT+GGG 0.562412 7_3:-81580503 Msa1129600:CDS
TCCCTTCCTGGAACAAGAGG+CGG 0.563395 7_3:-81580262 Msa1129600:CDS
TCTTTACATGCTCGCTAACA+AGG 0.564106 7_3:-81581176 Msa1129600:intron
GTGTGTTGCAGGCTGATGGT+TGG 0.566359 7_3:-81581809 Msa1129600:intron
CCGTGTGATTCACTATACAC+TGG 0.569851 7_3:-81580504 Msa1129600:CDS
GAATCATAATCCAAAGACTC+AGG 0.570217 7_3:+81579349 None:intergenic
CACCAGTCCCAAGGCTTAAG+GGG 0.573084 7_3:+81580479 None:intergenic
GGTGTCAAGCAGCTCTCGAA+TGG 0.582811 7_3:-81579613 Msa1129600:CDS
GAGTCCCTTCCTGGAACAAG+AGG 0.585313 7_3:-81580265 Msa1129600:CDS
CATCATGTGATGCTGCTACA+TGG 0.586772 7_3:-81579191 Msa1129600:CDS
GAAATACCGCCCAAATAGGT+AGG 0.586979 7_3:+81579574 None:intergenic
TCCTAAAAGGACTTGATGAG+TGG 0.590262 7_3:-81578377 Msa1129600:CDS
CCTAAAAGGACTTGATGAGT+GGG 0.598813 7_3:-81578376 Msa1129600:CDS
GTTGAATTCCGGAGTTATGG+TGG 0.600129 7_3:-81581483 Msa1129600:CDS
TATATCCAACGGAAACAAGA+GGG 0.602807 7_3:-81582197 Msa1129600:five_prime_UTR
TTGTAAGATCCTCCTAAACA+AGG 0.608903 7_3:+81582069 None:intergenic
ATCAAAAGCAAACCAGTCCA+CGG 0.610095 7_3:+81579478 None:intergenic
AGATGCACGCACGCAGCCAG+TGG 0.613650 7_3:-81582312 Msa1129600:five_prime_UTR
TTTCTGTTTAACGGCTGCTG+TGG 0.614224 7_3:-81579545 Msa1129600:CDS
CAAGATGTCCACCAGTCCCA+AGG 0.614633 7_3:+81580470 None:intergenic
AAAACTACTAAATCTTACAC+CGG 0.615106 7_3:-81581416 Msa1129600:CDS
ATATATCCAACGGAAACAAG+AGG 0.615931 7_3:-81582198 Msa1129600:five_prime_UTR
AAAATCAACATATGAAACAC+AGG 0.615989 7_3:+81578334 None:intergenic
GGTGCCTGACTTGATCACAT+AGG 0.616621 7_3:+81580018 None:intergenic
TCTGGATTTCAACTCTTCTG+GGG 0.623762 7_3:+81581249 None:intergenic
CACCAGATCCAATAAACACA+TGG 0.629948 7_3:-81581965 Msa1129600:CDS
ACGCAGCCAGTGGTGACCGA+AGG 0.632731 7_3:-81582302 Msa1129600:five_prime_UTR
ATGGTACTATGGATTAGGGA+TGG 0.639457 7_3:-81579172 Msa1129600:CDS
TGGCTCGACCACCATAACTC+CGG 0.646787 7_3:+81581475 None:intergenic
AACCAAACAGTAGAATCAGT+TGG 0.648274 7_3:-81582143 Msa1129600:CDS
AAGGTTCCTACCTATTTGGG+CGG 0.652522 7_3:-81579580 Msa1129600:CDS
TTAGGTTTGATGGTTGTCGG+GGG 0.659292 7_3:-81578456 Msa1129600:CDS
TTATCGGTGGGGAAAACATG+TGG 0.662735 7_3:-81579398 Msa1129600:CDS
GTCCACGGCATCACTTGCCG+GGG 0.666206 7_3:+81579493 None:intergenic
ACTACTAAATCTTACACCGG+AGG 0.674410 7_3:-81581413 Msa1129600:intron
CAAAGACTCAGGAAGTGACG+AGG 0.676512 7_3:+81579360 None:intergenic
CCACAATAGTATCGGCATCG+AGG 0.695118 7_3:+81581570 None:intergenic
CCAGTGTATAGTGAATCACA+CGG 0.701291 7_3:+81580504 None:intergenic
CTAATTTGAAGCATTCTGAG+AGG 0.701754 7_3:-81581505 Msa1129600:CDS
ATAAGCGGTGATGTAAACGG+TGG 0.756884 7_3:-81578304 Msa1129600:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTCTTTTTTTAATTAATTAA+AGG - chr7_3:81578653-81578672 Msa1129600:intron 10.0%
!! GTTAAAATTACAAAAATAAA+TGG + chr7_3:81582044-81582063 None:intergenic 10.0%
!!! TTTATTTTTGTAATTTTAAC+AGG - chr7_3:81582044-81582063 Msa1129600:CDS 10.0%
!! ATATTTATTTAAAGGAAAGT+TGG + chr7_3:81578309-81578328 None:intergenic 15.0%
!! CTTTAAATAAATATATCCAA+CGG - chr7_3:81578315-81578334 Msa1129600:three_prime_UTR 15.0%
!!! TTAACTGTTTGATTTAATTA+TGG - chr7_3:81578686-81578705 Msa1129600:intron 15.0%
!!! TTGTTATTAATGTTGTAAAA+AGG - chr7_3:81580123-81580142 Msa1129600:intron 15.0%
!! TTGATCTAATCTTATAATAA+AGG + chr7_3:81580529-81580548 None:intergenic 15.0%
!! ACAATGTTTATTGTATTATT+TGG - chr7_3:81581084-81581103 Msa1129600:intron 15.0%
!! TTAATTTATACTGTATTTAC+AGG - chr7_3:81581292-81581311 Msa1129600:CDS 15.0%
!! TATATCGAAATTATAAAAGT+TGG + chr7_3:81581680-81581699 None:intergenic 15.0%
!!! TTGATTTTTGTAATAATAAG+CGG - chr7_3:81582204-81582223 Msa1129600:five_prime_UTR 15.0%
!! CGTTGGATATATTTATTTAA+AGG + chr7_3:81578317-81578336 None:intergenic 20.0%
!!! ATTGTTACCTTTTTTGTAAT+TGG + chr7_3:81578834-81578853 None:intergenic 20.0%
!! TACAAAAAAGGTAACAATTA+AGG - chr7_3:81578836-81578855 Msa1129600:intron 20.0%
!!! ATTTTTAACCACAATAGTAT+CGG + chr7_3:81578964-81578983 None:intergenic 20.0%
!!! ATTTTTTGAGATTGTTAGTT+TGG - chr7_3:81579141-81579160 Msa1129600:CDS 20.0%
!!! TTTTTTGAGATTGTTAGTTT+GGG - chr7_3:81579142-81579161 Msa1129600:CDS 20.0%
!! TAAGCATATAAATCATAATG+AGG + chr7_3:81579470-81579489 None:intergenic 20.0%
!! TAATAGTTAGAATACAGTAT+GGG - chr7_3:81579672-81579691 Msa1129600:intron 20.0%
!! AATGAAATAAAAATGCATGA+GGG + chr7_3:81579832-81579851 None:intergenic 20.0%
!! TAATGAAATAAAAATGCATG+AGG + chr7_3:81579833-81579852 None:intergenic 20.0%
!! AAATATATGTATATGTCTCT+CGG - chr7_3:81579913-81579932 Msa1129600:intron 20.0%
!! TTAGATAATCTGAATTGAAA+AGG + chr7_3:81579943-81579962 None:intergenic 20.0%
!! TATTATAAGATTAGATCAAG+TGG - chr7_3:81580530-81580549 Msa1129600:CDS 20.0%
!! ATGTTTATTGTATTATTTGG+AGG - chr7_3:81581087-81581106 Msa1129600:intron 20.0%
!!! AAATACTTCAAACCTTTTTT+TGG - chr7_3:81581504-81581523 Msa1129600:CDS 20.0%
!!! AATACTTCAAACCTTTTTTT+GGG - chr7_3:81581505-81581524 Msa1129600:CDS 20.0%
!!! CGATATATTACAGTTAATTT+TGG - chr7_3:81581693-81581712 Msa1129600:intron 20.0%
!!! TATATTACAGTTAATTTTGG+TGG - chr7_3:81581696-81581715 Msa1129600:intron 20.0%
!!! TTGTACTTTTTAATAAGTTG+TGG - chr7_3:81581779-81581798 Msa1129600:CDS 20.0%
!!! TTTTGTAATTTTAACAGGTT+AGG - chr7_3:81582049-81582068 Msa1129600:CDS 20.0%
!! TTATTCTTTCAAAATCTAGT+TGG - chr7_3:81582372-81582391 Msa1129600:five_prime_UTR 20.0%
! AAGAAAGAAAAATACTGACA+CGG + chr7_3:81578630-81578649 None:intergenic 25.0%
! AACATGACCAATTACAAAAA+AGG - chr7_3:81578824-81578843 Msa1129600:intron 25.0%
!!! GTTTTCTTCTTGTTGATTAT+TGG - chr7_3:81578894-81578913 Msa1129600:intron 25.0%
!!! TTGATGATCTTTTCAAATGT+CGG - chr7_3:81578985-81579004 Msa1129600:intron 25.0%
! AAAACTACTAAATCTTACAC+CGG - chr7_3:81579107-81579126 Msa1129600:intron 25.0%
!!! CAAAAAATTGTTTTTACCTC+CGG + chr7_3:81579129-81579148 None:intergenic 25.0%
! GTAATAGTTAGAATACAGTA+TGG - chr7_3:81579671-81579690 Msa1129600:intron 25.0%
! ATCTATATCAGTATTCTCAA+AGG - chr7_3:81579704-81579723 Msa1129600:intron 25.0%
! AGTATTCTCAAAGGATTTAT+CGG - chr7_3:81579713-81579732 Msa1129600:intron 25.0%
!!! TATCTCAGTGTCTTATTTTT+AGG - chr7_3:81579772-81579791 Msa1129600:intron 25.0%
!!! ATCTCAGTGTCTTATTTTTA+GGG - chr7_3:81579773-81579792 Msa1129600:intron 25.0%
! ATGAAATAAAAATGCATGAG+GGG + chr7_3:81579831-81579850 None:intergenic 25.0%
! CATTAATAACAAACCAAAAG+AGG + chr7_3:81580115-81580134 None:intergenic 25.0%
!! TTTTGTCACAAGATTTAACT+GGG + chr7_3:81580175-81580194 None:intergenic 25.0%
!! GAAAATAGTCATTAGGATTT+TGG + chr7_3:81580287-81580306 None:intergenic 25.0%
! TTCACAAGAAAATAGTCATT+AGG + chr7_3:81580294-81580313 None:intergenic 25.0%
! TAGAATAATAAAGCACAGAA+TGG + chr7_3:81580333-81580352 None:intergenic 25.0%
!! CATATTAAGATTTGTTTCGA+TGG - chr7_3:81580889-81580908 Msa1129600:intron 25.0%
!! GTTATCTTCATTTGGTTTAT+CGG - chr7_3:81581109-81581128 Msa1129600:intron 25.0%
!!! ATACTTCAAACCTTTTTTTG+GGG - chr7_3:81581506-81581525 Msa1129600:CDS 25.0%
! TTGTGATTCAACATTTAAAG+AGG - chr7_3:81581626-81581645 Msa1129600:intron 25.0%
! AAAATCAACATATGAAACAC+AGG + chr7_3:81582192-81582211 None:intergenic 25.0%
! TAGAACAACAATACAAATCT+AGG + chr7_3:81582276-81582295 None:intergenic 25.0%
! CTAGTTGAAGATGTAAATAA+AGG - chr7_3:81582293-81582312 Msa1129600:five_prime_UTR 25.0%
! ATGTATCATTGTATTTGCTT+AGG - chr7_3:81582327-81582346 Msa1129600:five_prime_UTR 25.0%
! GCATACGTTACTCTTTTATA+CGG - chr7_3:81578487-81578506 Msa1129600:intron 30.0%
ATACGGAGATGAATTCTTAT+TGG - chr7_3:81578504-81578523 Msa1129600:intron 30.0%
TACGGAGATGAATTCTTATT+GGG - chr7_3:81578505-81578524 Msa1129600:intron 30.0%
CAAAACAACCATGTGTTTAT+TGG + chr7_3:81578569-81578588 None:intergenic 30.0%
! CAATAAACACATGGTTGTTT+TGG - chr7_3:81578567-81578586 Msa1129600:intron 30.0%
! TCTTCTTGTTGATTATTGGT+TGG - chr7_3:81578898-81578917 Msa1129600:intron 30.0%
TCGTTAAAAAGAGTTTCAGA+TGG + chr7_3:81579071-81579090 None:intergenic 30.0%
! TGAAACTCTTTTTAACGACA+TGG - chr7_3:81579073-81579092 Msa1129600:intron 30.0%
ACATTGTATAATGCAGATGT+TGG - chr7_3:81579324-81579343 Msa1129600:intron 30.0%
TTAAGTAATTAGAGTCACTG+AGG - chr7_3:81579417-81579436 Msa1129600:CDS 30.0%
GTTTAGATAGAATGTATGCT+AGG - chr7_3:81579500-81579519 Msa1129600:CDS 30.0%
ATTTGCCTAATGGCTAAAAA+TGG - chr7_3:81579577-81579596 Msa1129600:CDS 30.0%
CTAACTATTACAGACAATAC+CGG + chr7_3:81579662-81579681 None:intergenic 30.0%
! CTTTTGTCACAAGATTTAAC+TGG + chr7_3:81580176-81580195 None:intergenic 30.0%
ATAATAAAGCACAGAATGGT+AGG + chr7_3:81580329-81580348 None:intergenic 30.0%
CTGCTATAATTCACTTATGA+AGG - chr7_3:81580353-81580372 Msa1129600:intron 30.0%
ATGTGCTTAATGCTTGAAAT+TGG + chr7_3:81580410-81580429 None:intergenic 30.0%
ATTTCAAGCATTAAGCACAT+AGG - chr7_3:81580410-81580429 Msa1129600:intron 30.0%
TTTCAAGCATTAAGCACATA+GGG - chr7_3:81580411-81580430 Msa1129600:intron 30.0%
!! TACTTTGGTTCATTTTGTAG+AGG - chr7_3:81580479-81580498 Msa1129600:CDS 30.0%
GATGTTGAGATAGTTGTATA+AGG + chr7_3:81580563-81580582 None:intergenic 30.0%
TATACAACTATCTCAACATC+AGG - chr7_3:81580563-81580582 Msa1129600:intron 30.0%
TCTACCTCATCAAAATCAAA+TGG + chr7_3:81580674-81580693 None:intergenic 30.0%
ATGTCATGGATTCAAATAAC+AGG - chr7_3:81580818-81580837 Msa1129600:intron 30.0%
!! TTCTGTCTGTTTCTGTTTAA+CGG - chr7_3:81580969-81580988 Msa1129600:intron 30.0%
!! GTTTGCTTTTGATGTATGAA+TGG - chr7_3:81581055-81581074 Msa1129600:intron 30.0%
ATTTGGAGGTTATCTTCATT+TGG - chr7_3:81581101-81581120 Msa1129600:intron 30.0%
!!! CAAGAGTAAAGCTTATTTTG+TGG - chr7_3:81581214-81581233 Msa1129600:CDS 30.0%
!!! GAATAACTGCCTTGTTTTTA+AGG - chr7_3:81581416-81581435 Msa1129600:CDS 30.0%
AATTCGCGTTCTAATGTATT+AGG - chr7_3:81581440-81581459 Msa1129600:CDS 30.0%
! GAAATTTTCACCCCAAAAAA+AGG + chr7_3:81581519-81581538 None:intergenic 30.0%
AAAACAGTACATGTGTATAG+AGG + chr7_3:81581722-81581741 None:intergenic 30.0%
! CTATACACATGTACTGTTTT+CGG - chr7_3:81581722-81581741 Msa1129600:CDS 30.0%
CTTTCACATTACATCTCTTA+GGG + chr7_3:81581849-81581868 None:intergenic 30.0%
! TTTTAACAGGTTAGGTTTGA+TGG - chr7_3:81582057-81582076 Msa1129600:CDS 30.0%
ATAATAAGCGGTGATGTAAA+CGG - chr7_3:81582216-81582235 Msa1129600:five_prime_UTR 30.0%
ATATATCCAACGGAAACAAG+AGG - chr7_3:81578325-81578344 Msa1129600:exon 35.0%
TATATCCAACGGAAACAAGA+GGG - chr7_3:81578326-81578345 Msa1129600:exon 35.0%
AACCAAACAGTAGAATCAGT+TGG - chr7_3:81578380-81578399 Msa1129600:CDS 35.0%
! CTTCAATTCGAACCTTGTTT+AGG - chr7_3:81578442-81578461 Msa1129600:CDS 35.0%
TTGTAAGATCCTCCTAAACA+AGG + chr7_3:81578457-81578476 None:intergenic 35.0%
AACCATGTGTTTATTGGATC+TGG + chr7_3:81578563-81578582 None:intergenic 35.0%
! TTATGGTTTTTGTGTGTTGC+AGG - chr7_3:81578703-81578722 Msa1129600:intron 35.0%
! TGTTCGTCCTAAGAGATTTT+GGG - chr7_3:81578775-81578794 Msa1129600:intron 35.0%
TAAACACCCCAAAATCTCTT+AGG + chr7_3:81578785-81578804 None:intergenic 35.0%
! CTAATTTGAAGCATTCTGAG+AGG - chr7_3:81579018-81579037 Msa1129600:intron 35.0%
AAGAAACACAGTTGAAGACA+AGG + chr7_3:81579175-81579194 None:intergenic 35.0%
ATTGGGAAAGTCAGAGTAAT+AGG + chr7_3:81579229-81579248 None:intergenic 35.0%
ATTACTTAAGTTACGACACG+AGG + chr7_3:81579406-81579425 None:intergenic 35.0%
CATTAGGCAAATGTAACTGT+GGG + chr7_3:81579569-81579588 None:intergenic 35.0%
!!! CAATGCCATTTTTAGCCATT+AGG + chr7_3:81579585-81579604 None:intergenic 35.0%
ATTCTCAAAGGATTTATCGG+TGG - chr7_3:81579716-81579735 Msa1129600:intron 35.0%
!!! TTATTTTTAGGGCACCTTGT+CGG - chr7_3:81579784-81579803 Msa1129600:intron 35.0%
!!! TTTTGAAACCTGTTGATGTC+TGG - chr7_3:81580078-81580097 Msa1129600:intron 35.0%
TGACGTATTTCTTCTTACCT+TGG - chr7_3:81580201-81580220 Msa1129600:CDS 35.0%
GTATTTCTTCTTACCTTGGT+GGG - chr7_3:81580205-81580224 Msa1129600:CDS 35.0%
TATTTCTTCTTACCTTGGTG+GGG - chr7_3:81580206-81580225 Msa1129600:CDS 35.0%
GAGATAGTTGTATAAGGAAG+TGG + chr7_3:81580557-81580576 None:intergenic 35.0%
AGGAATCAATTCAATCCATC+AGG - chr7_3:81580583-81580602 Msa1129600:intron 35.0%
ATCAATTCAATCCATCAGGT+TGG - chr7_3:81580587-81580606 Msa1129600:intron 35.0%
! GATGATCCAAATCTAAAACC+AGG + chr7_3:81580625-81580644 None:intergenic 35.0%
GATTTGGATCATCTCATTTG+AGG - chr7_3:81580632-81580651 Msa1129600:intron 35.0%
CAAATGGCTAGATCATATGA+AGG + chr7_3:81580658-81580677 None:intergenic 35.0%
!! CTAGCCATTTGATTTTGATG+AGG - chr7_3:81580667-81580686 Msa1129600:intron 35.0%
ACTACTATCATCAAATGACC+TGG - chr7_3:81580784-81580803 Msa1129600:intron 35.0%
! ATCTTCATTTGGTTTATCGG+TGG - chr7_3:81581112-81581131 Msa1129600:intron 35.0%
! TCTTCATTTGGTTTATCGGT+GGG - chr7_3:81581113-81581132 Msa1129600:intron 35.0%
GAATCATAATCCAAAGACTC+AGG + chr7_3:81581177-81581196 None:intergenic 35.0%
GAGTCTTTGGATTATGATTC+TGG - chr7_3:81581177-81581196 Msa1129600:CDS 35.0%
! CTACATGGTACTATGGATTA+GGG - chr7_3:81581347-81581366 Msa1129600:intron 35.0%
GCAGTTATTCCAAAAAGACA+AGG + chr7_3:81581406-81581425 None:intergenic 35.0%
CGCGAATTACCTTAAAAACA+AGG + chr7_3:81581428-81581447 None:intergenic 35.0%
TCTTAGGGAATTCAAATGAG+TGG + chr7_3:81581834-81581853 None:intergenic 35.0%
CCTTTCACATTACATCTCTT+AGG + chr7_3:81581850-81581869 None:intergenic 35.0%
CCTAAGAGATGTAATGTGAA+AGG - chr7_3:81581847-81581866 Msa1129600:intron 35.0%
!!! GAAAGGTTTTAAGCTTGCAT+TGG - chr7_3:81581864-81581883 Msa1129600:intron 35.0%
!! GTTTTAAGCTTGCATTGGAA+AGG - chr7_3:81581869-81581888 Msa1129600:intron 35.0%
AGGCTAAAAATCAGTTTGAG+TGG - chr7_3:81581889-81581908 Msa1129600:intron 35.0%
AGAATTGAGAGAAAAGGGAA+AGG + chr7_3:81581920-81581939 None:intergenic 35.0%
CACTGAGAATTGAGAGAAAA+GGG + chr7_3:81581925-81581944 None:intergenic 35.0%
ACACTGAGAATTGAGAGAAA+AGG + chr7_3:81581926-81581945 None:intergenic 35.0%
! CTTTGCATCAGAGATTTGTT+TGG - chr7_3:81582006-81582025 Msa1129600:CDS 35.0%
! ATTATCCCTCTTGTTTCCGT+TGG + chr7_3:81578334-81578353 None:intergenic 40.0%
! CAATTCGAACCTTGTTTAGG+AGG - chr7_3:81578445-81578464 Msa1129600:CDS 40.0%
CACCAGATCCAATAAACACA+TGG - chr7_3:81578558-81578577 Msa1129600:intron 40.0%
!!! ATGGTTGTTTTGGTCTCTGA+TGG - chr7_3:81578577-81578596 Msa1129600:intron 40.0%
!!! GAGAAGGTTTTTGGCGAAAT+TGG + chr7_3:81578608-81578627 None:intergenic 40.0%
GAAAAATACTGACACGGAGA+AGG + chr7_3:81578624-81578643 None:intergenic 40.0%
! GTGTTCGTCCTAAGAGATTT+TGG - chr7_3:81578774-81578793 Msa1129600:intron 40.0%
! GTTCGTCCTAAGAGATTTTG+GGG - chr7_3:81578776-81578795 Msa1129600:intron 40.0%
! CATTCTGAGAGGTTGAATTC+CGG - chr7_3:81579029-81579048 Msa1129600:intron 40.0%
ACTACTAAATCTTACACCGG+AGG - chr7_3:81579110-81579129 Msa1129600:CDS 40.0%
! ACTGTGTTTCTTCCTTTTGC+AGG - chr7_3:81579183-81579202 Msa1129600:CDS 40.0%
GGATCAAAAACACGTGCATT+GGG + chr7_3:81579246-81579265 None:intergenic 40.0%
TGGATCAAAAACACGTGCAT+TGG + chr7_3:81579247-81579266 None:intergenic 40.0%
TCTGGATTTCAACTCTTCTG+GGG + chr7_3:81579277-81579296 None:intergenic 40.0%
GTCTGGATTTCAACTCTTCT+GGG + chr7_3:81579278-81579297 None:intergenic 40.0%
!! GTTGATAGTCTCTCCATTTC+CGG + chr7_3:81579306-81579325 None:intergenic 40.0%
TCTTTACATGCTCGCTAACA+AGG - chr7_3:81579347-81579366 Msa1129600:CDS 40.0%
GGGATTCTCTCAAACAAGTT+AGG + chr7_3:81579549-81579568 None:intergenic 40.0%
CCATTAGGCAAATGTAACTG+TGG + chr7_3:81579570-81579589 None:intergenic 40.0%
CCACAGTTACATTTGCCTAA+TGG - chr7_3:81579567-81579586 Msa1129600:CDS 40.0%
GTGTTCTATGTCCTATTGAC+CGG - chr7_3:81579640-81579659 Msa1129600:intron 40.0%
TACAGACAATACCGGTCAAT+AGG + chr7_3:81579654-81579673 None:intergenic 40.0%
CACTGAGATAAAATCTCCAC+AGG + chr7_3:81579762-81579781 None:intergenic 40.0%
CCAGTGTATAGTGAATCACA+CGG + chr7_3:81580022-81580041 None:intergenic 40.0%
CGTGTGATTCACTATACACT+GGG - chr7_3:81580020-81580039 Msa1129600:CDS 40.0%
! GGCAGGTAATTATCCTCTTT+TGG - chr7_3:81580099-81580118 Msa1129600:intron 40.0%
CGTATTTCTTCTTACCTTGG+TGG - chr7_3:81580204-81580223 Msa1129600:CDS 40.0%
ATAGGGCTTCGAATAAGTCT+TGG - chr7_3:81580428-81580447 Msa1129600:intron 40.0%
!! TTGCAGAATCGAGAGTACTT+TGG - chr7_3:81580464-81580483 Msa1129600:CDS 40.0%
!!! CAGTCTCCTGGTTTTAGATT+TGG - chr7_3:81580616-81580635 Msa1129600:intron 40.0%
CAAACACAACGCCTTGTATA+AGG - chr7_3:81580694-81580713 Msa1129600:intron 40.0%
!! ATTTTGGGAGGCCTTATACA+AGG + chr7_3:81580708-81580727 None:intergenic 40.0%
CTCCCAAAATCTCTTGTACA+GGG - chr7_3:81580718-81580737 Msa1129600:intron 40.0%
TCCTGTACATGAGAAGAACA+CGG + chr7_3:81580746-81580765 None:intergenic 40.0%
ATGACATGACAACATTGACC+AGG + chr7_3:81580805-81580824 None:intergenic 40.0%
TGGTCAATGTTGTCATGTCA+TGG - chr7_3:81580804-81580823 Msa1129600:intron 40.0%
AAGTATGCAAGTCCAACTAG+AGG + chr7_3:81580852-81580871 None:intergenic 40.0%
TGCAAGGTTCCTACCTATTT+GGG - chr7_3:81580940-81580959 Msa1129600:intron 40.0%
ATCAAAAGCAAACCAGTCCA+CGG + chr7_3:81581048-81581067 None:intergenic 40.0%
! CTTCATTTGGTTTATCGGTG+GGG - chr7_3:81581114-81581133 Msa1129600:intron 40.0%
GCTACATGGTACTATGGATT+AGG - chr7_3:81581346-81581365 Msa1129600:intron 40.0%
!! ATGGTACTATGGATTAGGGA+TGG - chr7_3:81581351-81581370 Msa1129600:intron 40.0%
CCAAAAAGACAAGGCAAAGA+TGG + chr7_3:81581397-81581416 None:intergenic 40.0%
! CCATCTTTGCCTTGTCTTTT+TGG - chr7_3:81581394-81581413 Msa1129600:intron 40.0%
GTCTACTCTGATGTGATTCT+AGG + chr7_3:81581956-81581975 None:intergenic 40.0%
! AGGTTAGGTTTGATGGTTGT+CGG - chr7_3:81582064-81582083 Msa1129600:CDS 40.0%
! CTTCTGAACATCTTGCTATC+CGG - chr7_3:81582119-81582138 Msa1129600:CDS 40.0%
!! CAAGTCCTTTTAGGAATGAC+CGG + chr7_3:81582141-81582160 None:intergenic 40.0%
TCCTAAAAGGACTTGATGAG+TGG - chr7_3:81582146-81582165 Msa1129600:CDS 40.0%
CCTAAAAGGACTTGATGAGT+GGG - chr7_3:81582147-81582166 Msa1129600:CDS 40.0%
AGTGGGATATTGCTCCAAAT+AGG - chr7_3:81582164-81582183 Msa1129600:exon 40.0%
ATGAAACACAGGCTCCTATT+TGG + chr7_3:81582181-81582200 None:intergenic 40.0%
TTTCAGTCGTCTCTGACCTT+CGG + chr7_3:81578240-81578259 None:intergenic 45.0%
! CGCCAACTGATTCTACTGTT+TGG + chr7_3:81578385-81578404 None:intergenic 45.0%
TTATTGGGCGTTCGTGTTCT+CGG - chr7_3:81578520-81578539 Msa1129600:intron 45.0%
! ACTGACACGGAGAAGGTTTT+TGG + chr7_3:81578617-81578636 None:intergenic 45.0%
! TTTTGTGTGTTGCAGGCTGA+TGG - chr7_3:81578710-81578729 Msa1129600:intron 45.0%
AGGACGAACACGATTAGGAT+TGG + chr7_3:81578765-81578784 None:intergenic 45.0%
CTCTTAGGACGAACACGATT+AGG + chr7_3:81578770-81578789 None:intergenic 45.0%
GAGGTTGAATTCCGGAGTTA+TGG - chr7_3:81579037-81579056 Msa1129600:intron 45.0%
GTTGAATTCCGGAGTTATGG+TGG - chr7_3:81579040-81579059 Msa1129600:intron 45.0%
! TCTTCCTTTTGCAGGAGATC+AGG - chr7_3:81579191-81579210 Msa1129600:CDS 45.0%
! CTTCCTTTTGCAGGAGATCA+GGG - chr7_3:81579192-81579211 Msa1129600:CDS 45.0%
AATCCCTGATCTCCTGCAAA+AGG + chr7_3:81579198-81579217 None:intergenic 45.0%
! AACTCTTCTGGGGACAAGTT+TGG + chr7_3:81579267-81579286 None:intergenic 45.0%
GGTCTGGATTTCAACTCTTC+TGG + chr7_3:81579279-81579298 None:intergenic 45.0%
GTTGAAATCCAGACCTGTTC+CGG - chr7_3:81579284-81579303 Msa1129600:intron 45.0%
ACATGCTCGCTAACAAGGTA+CGG - chr7_3:81579352-81579371 Msa1129600:CDS 45.0%
GCTAACAAGGTACGGAGTAT+AGG - chr7_3:81579360-81579379 Msa1129600:CDS 45.0%
!! TACGGAGTATAGGTACTGAG+AGG - chr7_3:81579370-81579389 Msa1129600:CDS 45.0%
!! GAGTATAGGTACTGAGAGGA+TGG - chr7_3:81579374-81579393 Msa1129600:CDS 45.0%
GTTCATGCTGATCTATCCAG+TGG - chr7_3:81579976-81579995 Msa1129600:CDS 45.0%
ATGCTGATCTATCCAGTGGA+TGG - chr7_3:81579980-81579999 Msa1129600:CDS 45.0%
CTTTCTCATCTACCATCCAC+TGG + chr7_3:81579995-81580014 None:intergenic 45.0%
CCGTGTGATTCACTATACAC+TGG - chr7_3:81580019-81580038 Msa1129600:CDS 45.0%
ATTACCTGCCAGACATCAAC+AGG + chr7_3:81580089-81580108 None:intergenic 45.0%
CTGGGTAGACATGATTGCTT+CGG + chr7_3:81580157-81580176 None:intergenic 45.0%
TGGGGTTCTTCAGGATGTTA+GGG - chr7_3:81580224-81580243 Msa1129600:CDS 45.0%
AGGATGTTAGGGAACAGCTT+GGG - chr7_3:81580235-81580254 Msa1129600:CDS 45.0%
! GTGCCTGACTTGATCACATA+GGG + chr7_3:81580507-81580526 None:intergenic 45.0%
GACTGAGAAAACCAACCTGA+TGG + chr7_3:81580601-81580620 None:intergenic 45.0%
! CCTGTACAAGAGATTTTGGG+AGG + chr7_3:81580720-81580739 None:intergenic 45.0%
CCTCCCAAAATCTCTTGTAC+AGG - chr7_3:81580717-81580736 Msa1129600:intron 45.0%
! GGCCCTGTACAAGAGATTTT+GGG + chr7_3:81580723-81580742 None:intergenic 45.0%
CTGTACATGAGAAGAACACG+GGG + chr7_3:81580744-81580763 None:intergenic 45.0%
CCTGTACATGAGAAGAACAC+GGG + chr7_3:81580745-81580764 None:intergenic 45.0%
CAGGATGCATAACCTCTAGT+TGG - chr7_3:81580837-81580856 Msa1129600:intron 45.0%
GTGCAAGGTTCCTACCTATT+TGG - chr7_3:81580939-81580958 Msa1129600:intron 45.0%
AAGGTTCCTACCTATTTGGG+CGG - chr7_3:81580943-81580962 Msa1129600:intron 45.0%
GAAATACCGCCCAAATAGGT+AGG + chr7_3:81580952-81580971 None:intergenic 45.0%
GACAGAAATACCGCCCAAAT+AGG + chr7_3:81580956-81580975 None:intergenic 45.0%
TTTCTGTTTAACGGCTGCTG+TGG - chr7_3:81580978-81580997 Msa1129600:intron 45.0%
TAGCTCTCTTGATTGTTCCC+CGG - chr7_3:81581013-81581032 Msa1129600:intron 45.0%
TTATCGGTGGGGAAAACATG+TGG - chr7_3:81581125-81581144 Msa1129600:intron 45.0%
CATCATGTGATGCTGCTACA+TGG - chr7_3:81581332-81581351 Msa1129600:intron 45.0%
GATGCTGCTACATGGTACTA+TGG - chr7_3:81581340-81581359 Msa1129600:intron 45.0%
TGGGGTGAAAATTTCATCCG+TGG - chr7_3:81581524-81581543 Msa1129600:CDS 45.0%
TTCATCCGTGGTTCCAAAAG+TGG - chr7_3:81581536-81581555 Msa1129600:CDS 45.0%
!!! AAGAGCCACTTTTGGAACCA+CGG + chr7_3:81581544-81581563 None:intergenic 45.0%
!! TGGCAACAAAGAGCCACTTT+TGG + chr7_3:81581552-81581571 None:intergenic 45.0%
TGCCAGTGCATGTCTGTTAT+CGG - chr7_3:81581567-81581586 Msa1129600:CDS 45.0%
! GGTTAGGTTTGATGGTTGTC+GGG - chr7_3:81582065-81582084 Msa1129600:CDS 45.0%
! GTTAGGTTTGATGGTTGTCG+GGG - chr7_3:81582066-81582085 Msa1129600:CDS 45.0%
! TTAGGTTTGATGGTTGTCGG+GGG - chr7_3:81582067-81582086 Msa1129600:CDS 45.0%
GCTATCCGGTCATTCCTAAA+AGG - chr7_3:81582133-81582152 Msa1129600:CDS 45.0%
! CCCACTCATCAAGTCCTTTT+AGG + chr7_3:81582150-81582169 None:intergenic 45.0%
ATAAGCGGTGATGTAAACGG+TGG - chr7_3:81582219-81582238 Msa1129600:five_prime_UTR 45.0%
!!! AAAATAATAAAATTTTAACA+TGG - chr7_3:81581653-81581672 Msa1129600:intron 5.0%
!! ATTGGATCTGGTGTCGCGTA+TGG + chr7_3:81578551-81578570 None:intergenic 50.0%
!! CCACAATAGTATCGGCATCG+AGG + chr7_3:81578956-81578975 None:intergenic 50.0%
CCTCGATGCCGATACTATTG+TGG - chr7_3:81578953-81578972 Msa1129600:intron 50.0%
ATCCAGACCTGTTCCGGAAA+TGG - chr7_3:81579290-81579309 Msa1129600:intron 50.0%
AGTCTCTCCATTTCCGGAAC+AGG + chr7_3:81579300-81579319 None:intergenic 50.0%
GTGAGTAGCACAGATTCCTG+TGG - chr7_3:81579743-81579762 Msa1129600:intron 50.0%
ACTCGACAGCAATTCCGACA+AGG + chr7_3:81579801-81579820 None:intergenic 50.0%
GAAACCTGTTGATGTCTGGC+AGG - chr7_3:81580082-81580101 Msa1129600:intron 50.0%
TTACCTTGGTGGGGTTCTTC+AGG - chr7_3:81580215-81580234 Msa1129600:CDS 50.0%
GTGGGGTTCTTCAGGATGTT+AGG - chr7_3:81580223-81580242 Msa1129600:CDS 50.0%
CAGGATGTTAGGGAACAGCT+TGG - chr7_3:81580234-81580253 Msa1129600:CDS 50.0%
GGATGTTAGGGAACAGCTTG+GGG - chr7_3:81580236-81580255 Msa1129600:CDS 50.0%
GCTCCCTATGTGATCAAGTC+AGG - chr7_3:81580501-81580520 Msa1129600:CDS 50.0%
! GGTGCCTGACTTGATCACAT+AGG + chr7_3:81580508-81580527 None:intergenic 50.0%
!!! GGTTGGTTTTCTCAGTCTCC+TGG - chr7_3:81580604-81580623 Msa1129600:intron 50.0%
! GGGCCCTGTACAAGAGATTT+TGG + chr7_3:81580724-81580743 None:intergenic 50.0%
CCCGTGTTCTTCTCATGTAC+AGG - chr7_3:81580742-81580761 Msa1129600:intron 50.0%
CTCGAATGGTTCTCAGTGCA+AGG - chr7_3:81580924-81580943 Msa1129600:intron 50.0%
CAAAGACTCAGGAAGTGACG+AGG + chr7_3:81581166-81581185 None:intergenic 50.0%
CTCGTCACTTCCTGAGTCTT+TGG - chr7_3:81581164-81581183 Msa1129600:intron 50.0%
!! TGGATTAGGGATGGCCTTGT+TGG - chr7_3:81581360-81581379 Msa1129600:intron 50.0%
! AGGCAAAGATGGAGCACCAA+TGG + chr7_3:81581386-81581405 None:intergenic 50.0%
AGCCGATAACAGACATGCAC+TGG + chr7_3:81581572-81581591 None:intergenic 50.0%
GTGTGTTGCAGGCTGATGGT+TGG - chr7_3:81578714-81578733 Msa1129600:intron 55.0%
TGGCTCGACCACCATAACTC+CGG + chr7_3:81579051-81579070 None:intergenic 55.0%
CTCCATTTCCGGAACAGGTC+TGG + chr7_3:81579295-81579314 None:intergenic 55.0%
ACTGGGACCCCTTAAGCCTT+GGG - chr7_3:81580037-81580056 Msa1129600:CDS 55.0%
CACCAGTCCCAAGGCTTAAG+GGG + chr7_3:81580047-81580066 None:intergenic 55.0%
CCACCAGTCCCAAGGCTTAA+GGG + chr7_3:81580048-81580067 None:intergenic 55.0%
TCCACCAGTCCCAAGGCTTA+AGG + chr7_3:81580049-81580068 None:intergenic 55.0%
CAAGATGTCCACCAGTCCCA+AGG + chr7_3:81580056-81580075 None:intergenic 55.0%
! CTTGGGACTGGTGGACATCT+TGG - chr7_3:81580054-81580073 Msa1129600:CDS 55.0%
CATCCTGAAGAACCCCACCA+AGG + chr7_3:81580221-81580240 None:intergenic 55.0%
GAGTCCCTTCCTGGAACAAG+AGG - chr7_3:81580258-81580277 Msa1129600:CDS 55.0%
TCCCTTCCTGGAACAAGAGG+CGG - chr7_3:81580261-81580280 Msa1129600:CDS 55.0%
! TTTTGGCCGCCTCTTGTTCC+AGG + chr7_3:81580270-81580289 None:intergenic 55.0%
GGTGTCAAGCAGCTCTCGAA+TGG - chr7_3:81580910-81580929 Msa1129600:intron 55.0%
! TGGAGCACCAATGGCCAACA+AGG + chr7_3:81581377-81581396 None:intergenic 55.0%
!! GGTTGTCGGGGGCATCATAT+TGG - chr7_3:81582078-81582097 Msa1129600:CDS 55.0%
CTCTGACCTTCGGTCACCAC+TGG + chr7_3:81578230-81578249 None:intergenic 60.0%
CACTGGGACCCCTTAAGCCT+TGG - chr7_3:81580036-81580055 Msa1129600:CDS 60.0%
GACCCCTTAAGCCTTGGGAC+TGG - chr7_3:81580042-81580061 Msa1129600:CDS 60.0%
CCCTTAAGCCTTGGGACTGG+TGG - chr7_3:81580045-81580064 Msa1129600:CDS 60.0%
GCCGCCTCTTGTTCCAGGAA+GGG + chr7_3:81580265-81580284 None:intergenic 60.0%
ACGGCTGCTGTGGTGTCTCT+TGG - chr7_3:81580988-81581007 Msa1129600:intron 60.0%
AGTCCACGGCATCACTTGCC+GGG + chr7_3:81581034-81581053 None:intergenic 60.0%
CAGTCCACGGCATCACTTGC+CGG + chr7_3:81581035-81581054 None:intergenic 60.0%
!! GGGATGGCCTTGTTGGCCAT+TGG - chr7_3:81581367-81581386 Msa1129600:intron 60.0%
AGATGCACGCACGCAGCCAG+TGG - chr7_3:81578211-81578230 Msa1129600:three_prime_UTR 65.0%
ACGCAGCCAGTGGTGACCGA+AGG - chr7_3:81578221-81578240 Msa1129600:three_prime_UTR 65.0%
CAGCTTGGGGAGTCCCTTCC+TGG - chr7_3:81580249-81580268 Msa1129600:CDS 65.0%
GGCCGCCTCTTGTTCCAGGA+AGG + chr7_3:81580266-81580285 None:intergenic 65.0%
TTCCCCGGCAAGTGATGCCG+TGG - chr7_3:81581028-81581047 Msa1129600:intron 65.0%
GTCCACGGCATCACTTGCCG+GGG + chr7_3:81581033-81581052 None:intergenic 65.0%
CGGCAAGTGATGCCGTGGAC+TGG - chr7_3:81581033-81581052 Msa1129600:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81578140 81582405 81578140 ID=Msa1129600;Name=Msa1129600
chr7_3 mRNA 81578140 81582405 81578140 ID=Msa1129600-mRNA-1;Parent=Msa1129600;Name=Msa1129600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=236|0.88|0.9|1|1|1|10|198|559
chr7_3 exon 81578140 81578479 81578140 ID=Msa1129600-mRNA-1:exon:23764;Parent=Msa1129600-mRNA-1
chr7_3 exon 81579108 81579231 81579108 ID=Msa1129600-mRNA-1:exon:23763;Parent=Msa1129600-mRNA-1
chr7_3 exon 81579341 81579647 81579341 ID=Msa1129600-mRNA-1:exon:23762;Parent=Msa1129600-mRNA-1
chr7_3 exon 81579941 81580075 81579941 ID=Msa1129600-mRNA-1:exon:23761;Parent=Msa1129600-mRNA-1
chr7_3 exon 81580171 81580308 81580171 ID=Msa1129600-mRNA-1:exon:23760;Parent=Msa1129600-mRNA-1
chr7_3 exon 81580442 81580549 81580442 ID=Msa1129600-mRNA-1:exon:23759;Parent=Msa1129600-mRNA-1
chr7_3 exon 81581177 81581340 81581177 ID=Msa1129600-mRNA-1:exon:23758;Parent=Msa1129600-mRNA-1
chr7_3 exon 81581414 81581599 81581414 ID=Msa1129600-mRNA-1:exon:23757;Parent=Msa1129600-mRNA-1
chr7_3 exon 81581700 81581820 81581700 ID=Msa1129600-mRNA-1:exon:23756;Parent=Msa1129600-mRNA-1
chr7_3 exon 81581915 81582405 81581915 ID=Msa1129600-mRNA-1:exon:23755;Parent=Msa1129600-mRNA-1
chr7_3 five_prime_UTR 81582170 81582405 81582170 ID=Msa1129600-mRNA-1:five_prime_utr;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81581915 81582169 81581915 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81581700 81581820 81581700 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81581414 81581599 81581414 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81581177 81581340 81581177 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81580442 81580549 81580442 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81580171 81580308 81580171 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81579941 81580075 81579941 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81579341 81579647 81579341 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81579108 81579231 81579108 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 CDS 81578338 81578479 81578338 ID=Msa1129600-mRNA-1:cds;Parent=Msa1129600-mRNA-1
chr7_3 three_prime_UTR 81578140 81578337 81578140 ID=Msa1129600-mRNA-1:three_prime_utr;Parent=Msa1129600-mRNA-1
Gene Sequence

>Msa1129600

ATGAAACCAAACAGTAGAATCAGTTGGCGTTCTTTACTATGCTTTATTATTTCTCTACTTTGTATTCTTCAATTCGAACCTTGTTTAGGAGGATCTTACAATGAAGAAGAAGCATACGTTACTCTTTTATACGGAGATGAATTCTTATTGGGCGTTCGTGTTCTCGGTAAATCCATACGCGACACCAGATCCAATAAACACATGGTTGTTTTGGTCTCTGATGGTGTTTCCAATTTCGCCAAAAACCTTCTCCGTGCTGATGGTTGGATAGTTGAGCAGATTACTTTACTTGCCAATCCTAATCGTGTTCGTCCTAAGAGATTTTGGGGTGTTTACACTAAGTTGAAAATCTTTAACATGACCAATTACAAAAAAGTTGTTTACCTCGATGCCGATACTATTGTGGTTAAAAATATTGATGATCTTTTCAAATGTCGGAAATTCTGTGCTAATTTGAAGCATTCTGAGAGGTTGAATTCCGGAGTTATGGTGGTCGAGCCATCTGAAACTCTTTTTAACGACATGGTCAACAAAATTAAAACTACTAAATCTTACACCGGAGGAGATCAGGGATTTCTAAACTCCTATTACTCTGACTTTCCCAATGCACGTGTTTTTGATCCAAACTTGTCCCCAGAAGAGTTGAAATCCAGACCTGTTCCGGAAATGGAGAGACTATCAACATTGTATAATGCAGATGTTGGTCTTTACATGCTCGCTAACAAGTGGATGGTAGATGAGAAAGAGCTCCGTGTGATTCACTATACACTGGGACCCCTTAAGCCTTGGGACTGGTGGACATCTTGGCTTTTGAAACCTGTTGATGTCTGGCAGGATGTTAGGGAACAGCTTGGGGAGTCCCTTCCTGGAACAAGAGGCGGCCAAAATCCTAATGACTATTTTCTTGTGAAATTTCTCTTTTTCCTACCATTCTGTGCTTTATTATTCTACTGCTATAATTCACTTATGAAGAATCGAGAGTACTTTGGTTCATTTTGTAGAGGCTCCCTATGTGATCAAGTCAGGCACCTTTATTATAAGATTAGATCAAGTGGACCACTTCCTTATACAACTATCTCAACATCAGGAATCAATTCAATCCATCAGATTTGTTTCGATGGTGTCAAGCAGCTCTCGAATGGTTCTCAGTGCAAGGTTCCTACCTATTTGGGCGGTATTTCTGTCTGTTTCTGTTTAACGGCTGCTGTGGTGTCTCTTGGACTAGCTCTCTTGATTGTTCCCCGGCAAGTGATGCCGTGGACTGGTTTGCTTTTGATGTATGAATGGACATTCACAATGTTTATTGTATTATTTGGAGGTTATCTTCATTTGGTTTATCGGTGGGGAAAACATGTGGCATCACGAGCAGCATCCTCGTCACTTCCTGAGTCTTTGGATTATGATTCTGGAAAACGTCATCAAAGACAGATATCATCATGTGATGCTGCTACATGGTACTATGGATTAGGGATGGCCTTGTTGGCCATTGGTGCTCCATCTTTGCCTTGTCTTTTTGGAATAACTGCCTTGTTTTTAAGGTTAGGTTTGATGGTTGTCGGGGGCATCATATTGGCATCTTTTATGACATATGCTTCTGAACATCTTGCTATCCGGTCATTCCTAAAAGGACTTGATGAGTGGGATATTGCTCCAAATAGGAGCCTGTGTTTCATATGTTGA

Protein sequence

>Msa1129600

MKPNSRISWRSLLCFIISLLCILQFEPCLGGSYNEEEAYVTLLYGDEFLLGVRVLGKSIRDTRSNKHMVVLVSDGVSNFAKNLLRADGWIVEQITLLANPNRVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVVKNIDDLFKCRKFCANLKHSERLNSGVMVVEPSETLFNDMVNKIKTTKSYTGGDQGFLNSYYSDFPNARVFDPNLSPEELKSRPVPEMERLSTLYNADVGLYMLANKWMVDEKELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLGESLPGTRGGQNPNDYFLVKFLFFLPFCALLFYCYNSLMKNREYFGSFCRGSLCDQVRHLYYKIRSSGPLPYTTISTSGINSIHQICFDGVKQLSNGSQCKVPTYLGGISVCFCLTAAVVSLGLALLIVPRQVMPWTGLLLMYEWTFTMFIVLFGGYLHLVYRWGKHVASRAASSSLPESLDYDSGKRHQRQISSCDAATWYYGLGMALLAIGAPSLPCLFGITALFLRLGLMVVGGIILASFMTYASEHLAIRSFLKGLDEWDIAPNRSLCFIC*