AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426310 MtrunA17_Chr8g0388411 95.714 140 6 0 1 140 1 140 3.93e-99 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426310 AT5G42070.1 78.571 70 15 0 65 134 69 138 4.04e-36 122

Find 65 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAATGTATTCGTAAAAT+AGG 0.190213 tig0025962:+54170 Msa1426310:three_prime_UTR
TGTCCTGGATTTGTGGCTTC+TGG 0.277176 tig0025962:+52934 Msa1426310:CDS
GGTGGTATTGCAACAGTTCC+TGG 0.294401 tig0025962:+52877 Msa1426310:CDS
CATGGCCTGTATGCCTTTAT+AGG 0.312442 tig0025962:-52913 None:intergenic
CGCACCCTGCCCGAGTAAAA+AGG 0.330764 tig0025962:+52381 Msa1426310:five_prime_UTR
CTTTGGCTGGTGGCCTATAA+AGG 0.340571 tig0025962:+52900 Msa1426310:CDS
AAAATATGCTGTAAGGATTC+TGG 0.343912 tig0025962:+54133 Msa1426310:three_prime_UTR
ATTGCAACAGTTCCTGGCTT+TGG 0.355448 tig0025962:+52883 Msa1426310:CDS
CAGGCCATGTCCTGGATTTG+TGG 0.362074 tig0025962:+52927 Msa1426310:CDS
ATCAATGTATTCGTAAAATA+GGG 0.371971 tig0025962:+54171 Msa1426310:three_prime_UTR
TGCCCCTCTTCCTTAACCCT+GGG 0.391184 tig0025962:-54105 None:intergenic
TTGCCCCTCTTCCTTAACCC+TGG 0.391273 tig0025962:-54106 None:intergenic
CAACAGTTCCTGGCTTTGGC+TGG 0.392114 tig0025962:+52887 Msa1426310:CDS
AAAGTAATGTTGGAAGTTAA+CGG 0.425034 tig0025962:-54271 None:intergenic
CAGTTCCTGGCTTTGGCTGG+TGG 0.448784 tig0025962:+52890 Msa1426310:CDS
GCAGAAGAAATGAGTGAAGT+TGG 0.456714 tig0025962:-52659 None:intergenic
CAATGGTGAGGGTAGGATGC+AGG 0.456901 tig0025962:+52855 Msa1426310:CDS
GGAAGTTAACGGCAAGGAAC+CGG 0.465689 tig0025962:-54260 None:intergenic
TGACATAAAACCCAGGGTTA+AGG 0.473157 tig0025962:+54095 Msa1426310:three_prime_UTR
GAAACAGCAAGTTCATCATC+TGG 0.480522 tig0025962:-52683 None:intergenic
GACGAGGTTGTCTCCGGTAG+TGG 0.489301 tig0025962:+52988 Msa1426310:CDS
CCACCAGAAGCCACAAATCC+AGG 0.502695 tig0025962:-52937 None:intergenic
TGGATGGTACCTCTGTTTAG+TGG 0.503777 tig0025962:-52723 None:intergenic
AAGGCATACAGGCCATGTCC+TGG 0.519447 tig0025962:+52919 Msa1426310:CDS
TTGTATCATAAAAGTAATGT+TGG 0.520043 tig0025962:-54281 None:intergenic
TGCAATGTAATCATCTTATG+TGG 0.525133 tig0025962:+54197 Msa1426310:three_prime_UTR
AAAACCCAGGGTTAAGGAAG+AGG 0.530788 tig0025962:+54101 Msa1426310:three_prime_UTR
GGAACAAATATCTTAGTAGC+TGG 0.533811 tig0025962:-52620 None:intergenic
TGGTGGTAGGTACAGACGAC+AGG 0.534138 tig0025962:+52954 Msa1426310:CDS
GATTTGTGGCTTCTGGTGGT+AGG 0.534194 tig0025962:+52941 Msa1426310:CDS
GACTTGGAGTCAGTTGCAGT+TGG 0.535101 tig0025962:-53024 None:intergenic
ATAGGCCACCAGCCAAAGCC+AGG 0.536722 tig0025962:-52895 None:intergenic
TGAAGAGCTAAGTGTTTGCA+AGG 0.537825 tig0025962:+54045 Msa1426310:exon
AGCATGGACGAGGTTGTCTC+CGG 0.542240 tig0025962:+52982 Msa1426310:CDS
GAAGTTGGAGAGCATAGTGT+GGG 0.545271 tig0025962:-52644 None:intergenic
CACCTCAATGAAGCAGTGGC+TGG 0.545479 tig0025962:-54074 None:intergenic
GGAAACGAAGAAATTGAGAA+AGG 0.546629 tig0025962:+52829 Msa1426310:CDS
AAACCCAGGGTTAAGGAAGA+GGG 0.548593 tig0025962:+54102 Msa1426310:three_prime_UTR
TGAAGTTGGAGAGCATAGTG+TGG 0.558341 tig0025962:-52645 None:intergenic
CCTGGATTTGTGGCTTCTGG+TGG 0.563457 tig0025962:+52937 Msa1426310:CDS
GAAATTGAGAAAGGATGCAA+TGG 0.563789 tig0025962:+52838 Msa1426310:CDS
TGATGATAATGTTGAGGTGT+TGG 0.564881 tig0025962:-52566 None:intergenic
AAGGATGCAATGGTGAGGGT+AGG 0.574706 tig0025962:+52848 Msa1426310:CDS
AATGGTGAGGGTAGGATGCA+GGG 0.575709 tig0025962:+52856 Msa1426310:CDS
CAGACGACAGGGACAAAGCA+TGG 0.576125 tig0025962:+52966 Msa1426310:CDS
GGTGGCCTATAAAGGCATAC+AGG 0.580795 tig0025962:+52908 Msa1426310:CDS
GAGAAAGGATGCAATGGTGA+GGG 0.581838 tig0025962:+52844 Msa1426310:CDS
TATAAATTGAAGTAAAAGTG+TGG 0.587372 tig0025962:+52487 Msa1426310:five_prime_UTR
TACCAGCCACTGCTTCATTG+AGG 0.593729 tig0025962:+54072 Msa1426310:three_prime_UTR
AGACAATAGATACCTTGACT+TGG 0.607021 tig0025962:-53040 None:intergenic
ATGTCACCTCAATGAAGCAG+TGG 0.616278 tig0025962:-54078 None:intergenic
TGAGAAAGGATGCAATGGTG+AGG 0.617666 tig0025962:+52843 Msa1426310:CDS
TTGAGGTGACATAAAACCCA+GGG 0.626355 tig0025962:+54089 Msa1426310:three_prime_UTR
GTTGGAGAGCATAGTGTGGG+AGG 0.638611 tig0025962:-52641 None:intergenic
AATGTTGGAAGTTAACGGCA+AGG 0.641620 tig0025962:-54266 None:intergenic
AACAGCGGTTGCAAAGCATG+TGG 0.642827 tig0025962:+52808 Msa1426310:intron
AACCCAGGGTTAAGGAAGAG+GGG 0.643408 tig0025962:+54103 Msa1426310:three_prime_UTR
ACAGGGACAAAGCATGGACG+AGG 0.654227 tig0025962:+52972 Msa1426310:CDS
CTGCAACTGACTCCAAGTCA+AGG 0.664830 tig0025962:+53028 Msa1426310:CDS
ATTGAGGTGACATAAAACCC+AGG 0.671779 tig0025962:+54088 Msa1426310:three_prime_UTR
TGAACGTGATGATAATGTTG+AGG 0.683199 tig0025962:-52572 None:intergenic
GAAGCCACAAATCCAGGACA+TGG 0.686791 tig0025962:-52931 None:intergenic
GGTGGTAGGTACAGACGACA+GGG 0.692150 tig0025962:+52955 Msa1426310:CDS
CAGAATTCTCCACTAAACAG+AGG 0.708713 tig0025962:+52714 Msa1426310:CDS
GGTGAGGGTAGGATGCAGGG+TGG 0.740434 tig0025962:+52859 Msa1426310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATAAAAAATA+GGG - tig0025962:53248-53267 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG - tig0025962:53249-53268 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG + tig0025962:53248-53267 Msa1426310:intron 0.0%
!! AAATAAAAAAATAAAAAATA+GGG - tig0025962:53248-53267 None:intergenic 0.0%
!! AAAATAAAAAAATAAAAAAT+AGG - tig0025962:53249-53268 None:intergenic 0.0%
!!! TATTTTTTATTTTTTTATTT+TGG + tig0025962:53248-53267 Msa1426310:intron 0.0%
!!! AAAGATTTTTATTTAATGAA+GGG - tig0025962:52754-52773 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - tig0025962:52755-52774 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - tig0025962:53096-53115 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG + tig0025962:53806-53825 Msa1426310:intron 10.0%
!!! AAAGATTTTTATTTAATGAA+GGG - tig0025962:52754-52773 None:intergenic 10.0%
!!! TAAAGATTTTTATTTAATGA+AGG - tig0025962:52755-52774 None:intergenic 10.0%
!! AAGATTTATCTATAAATAAA+TGG - tig0025962:53096-53115 None:intergenic 10.0%
!!! ATGATAATAACTTTTTTTTT+TGG + tig0025962:53806-53825 Msa1426310:intron 10.0%
!!! TATCCGTAAATATTTTTTAT+CGG + tig0025962:52448-52467 Msa1426310:five_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG - tig0025962:52753-52772 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG - tig0025962:53534-53553 None:intergenic 15.0%
!!! TATCCGTAAATATTTTTTAT+CGG + tig0025962:52448-52467 Msa1426310:five_prime_UTR 15.0%
!!! AAGATTTTTATTTAATGAAG+GGG - tig0025962:52753-52772 None:intergenic 15.0%
!! AATTACTCCTATATAATAAA+AGG - tig0025962:53534-53553 None:intergenic 15.0%
!! ACACCGATAAAAAATATTTA+CGG - tig0025962:52454-52473 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG + tig0025962:52487-52506 Msa1426310:five_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG - tig0025962:52752-52771 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG - tig0025962:53088-53107 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + tig0025962:53209-53228 Msa1426310:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + tig0025962:53210-53229 Msa1426310:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + tig0025962:53861-53880 Msa1426310:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + tig0025962:53981-54000 Msa1426310:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + tig0025962:54170-54189 Msa1426310:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + tig0025962:54171-54190 Msa1426310:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + tig0025962:54241-54260 Msa1426310:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - tig0025962:54284-54303 None:intergenic 20.0%
!! ACACCGATAAAAAATATTTA+CGG - tig0025962:52454-52473 None:intergenic 20.0%
!! TATAAATTGAAGTAAAAGTG+TGG + tig0025962:52487-52506 Msa1426310:five_prime_UTR 20.0%
!!! AGATTTTTATTTAATGAAGG+GGG - tig0025962:52752-52771 None:intergenic 20.0%
!! TCTATAAATAAATGGTAAAC+TGG - tig0025962:53088-53107 None:intergenic 20.0%
!!! ATTTTGTTTATGTTGATAGA+AGG + tig0025962:53209-53228 Msa1426310:intron 20.0%
!!! TTTTGTTTATGTTGATAGAA+GGG + tig0025962:53210-53229 Msa1426310:intron 20.0%
!! AATTGTGTGAATTGTTATAT+AGG + tig0025962:53861-53880 Msa1426310:intron 20.0%
!! CTAATCAGTATAATATATCA+TGG + tig0025962:53981-54000 Msa1426310:intron 20.0%
!! TATCAATGTATTCGTAAAAT+AGG + tig0025962:54170-54189 Msa1426310:three_prime_UTR 20.0%
!! ATCAATGTATTCGTAAAATA+GGG + tig0025962:54171-54190 Msa1426310:three_prime_UTR 20.0%
!!! TTTTTTTTTTCATTGATCAC+CGG + tig0025962:54241-54260 Msa1426310:three_prime_UTR 20.0%
!! TTGTATCATAAAAGTAATGT+TGG - tig0025962:54284-54303 None:intergenic 20.0%
!! TCTATTAACTCCTTTTTACT+CGG - tig0025962:52394-52413 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG + tig0025962:52597-52616 Msa1426310:CDS 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + tig0025962:53177-53196 Msa1426310:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + tig0025962:53211-53230 Msa1426310:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG + tig0025962:53257-53276 Msa1426310:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + tig0025962:53258-53277 Msa1426310:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - tig0025962:53441-53460 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG + tig0025962:53538-53557 Msa1426310:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - tig0025962:53713-53732 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - tig0025962:53770-53789 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + tig0025962:53868-53887 Msa1426310:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - tig0025962:54009-54028 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + tig0025962:54007-54026 Msa1426310:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + tig0025962:54126-54145 Msa1426310:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - tig0025962:54274-54293 None:intergenic 25.0%
!! TCTATTAACTCCTTTTTACT+CGG - tig0025962:52394-52413 None:intergenic 25.0%
! TGTACAAACCAAAAAAATCA+TGG + tig0025962:52597-52616 Msa1426310:CDS 25.0%
!!! CAAATGAGAAGGATTTTAAT+AGG + tig0025962:53177-53196 Msa1426310:intron 25.0%
!! TTTGTTTATGTTGATAGAAG+GGG + tig0025962:53211-53230 Msa1426310:intron 25.0%
!!! TTTTTTTATTTTGGTTCGCA+AGG + tig0025962:53257-53276 Msa1426310:intron 25.0%
!!! TTTTTTATTTTGGTTCGCAA+GGG + tig0025962:53258-53277 Msa1426310:intron 25.0%
! AAAGATAAGATCAAGAGTTA+AGG - tig0025962:53441-53460 None:intergenic 25.0%
! TTATATAGGAGTAATTCCAT+AGG + tig0025962:53538-53557 Msa1426310:intron 25.0%
!!! AGGTGTTATTTAAGATAGAA+AGG - tig0025962:53713-53732 None:intergenic 25.0%
! ATAAAGTGAGATGTATTTCA+TGG - tig0025962:53770-53789 None:intergenic 25.0%
! TGAATTGTTATATAGGATGA+TGG + tig0025962:53868-53887 Msa1426310:intron 25.0%
!! CTTTTTGTTACTGCAAAATT+TGG - tig0025962:54009-54028 None:intergenic 25.0%
!! CAAATTTTGCAGTAACAAAA+AGG + tig0025962:54007-54026 Msa1426310:intron 25.0%
! CAAAAACAAAATATGCTGTA+AGG + tig0025962:54126-54145 Msa1426310:three_prime_UTR 25.0%
! AAAGTAATGTTGGAAGTTAA+CGG - tig0025962:54274-54293 None:intergenic 25.0%
! CTATTAACTCCTTTTTACTC+GGG - tig0025962:52393-52412 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG + tig0025962:52462-52481 Msa1426310:five_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG + tig0025962:52463-52482 Msa1426310:five_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - tig0025962:53004-53023 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + tig0025962:53057-53076 Msa1426310:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + tig0025962:53058-53077 Msa1426310:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + tig0025962:53166-53185 Msa1426310:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + tig0025962:53259-53278 Msa1426310:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + tig0025962:53327-53346 Msa1426310:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - tig0025962:53433-53452 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG - tig0025962:53473-53492 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG + tig0025962:53524-53543 Msa1426310:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + tig0025962:53609-53628 Msa1426310:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - tig0025962:53733-53752 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - tig0025962:53744-53763 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - tig0025962:53759-53778 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - tig0025962:53971-53990 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + tig0025962:54011-54030 Msa1426310:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + tig0025962:54133-54152 Msa1426310:three_prime_UTR 30.0%
TGCAATGTAATCATCTTATG+TGG + tig0025962:54197-54216 Msa1426310:three_prime_UTR 30.0%
! CTATTAACTCCTTTTTACTC+GGG - tig0025962:52393-52412 None:intergenic 30.0%
!!! TTTTATCGGTGTTGAACTTT+TGG + tig0025962:52462-52481 Msa1426310:five_prime_UTR 30.0%
!!! TTTATCGGTGTTGAACTTTT+GGG + tig0025962:52463-52482 Msa1426310:five_prime_UTR 30.0%
!!! TGTTTTAATTTTGCCACTAC+CGG - tig0025962:53004-53023 None:intergenic 30.0%
TTGTCTCTTTCTCATGTATA+TGG + tig0025962:53057-53076 Msa1426310:intron 30.0%
TGTCTCTTTCTCATGTATAT+GGG + tig0025962:53058-53077 Msa1426310:intron 30.0%
TCTAGTTAGTTCAAATGAGA+AGG + tig0025962:53166-53185 Msa1426310:intron 30.0%
!!! TTTTTATTTTGGTTCGCAAG+GGG + tig0025962:53259-53278 Msa1426310:intron 30.0%
CTTGATTCTAAGTCTTTCTT+AGG + tig0025962:53327-53346 Msa1426310:intron 30.0%
GATCAAGAGTTAAGGTAATT+TGG - tig0025962:53433-53452 None:intergenic 30.0%
TGTTGTCTGTGTTAAATGAT+TGG - tig0025962:53473-53492 None:intergenic 30.0%
! TTGCAGGCCTTTTATTATAT+AGG + tig0025962:53524-53543 Msa1426310:intron 30.0%
!! AAGAGTGTGTTTTGCAAATA+GGG + tig0025962:53609-53628 Msa1426310:intron 30.0%
ATGAAATATTGGAACACTTG+AGG - tig0025962:53733-53752 None:intergenic 30.0%
TAGTTCGGTAGATGAAATAT+TGG - tig0025962:53744-53763 None:intergenic 30.0%
!! TGTATTTCATGGTTCTAGTT+CGG - tig0025962:53759-53778 None:intergenic 30.0%
! TACTGATTAGAAGCTAAAGA+CGG - tig0025962:53971-53990 None:intergenic 30.0%
! TTTTGCAGTAACAAAAAGGA+TGG + tig0025962:54011-54030 Msa1426310:intron 30.0%
AAAATATGCTGTAAGGATTC+TGG + tig0025962:54133-54152 Msa1426310:three_prime_UTR 30.0%
TGCAATGTAATCATCTTATG+TGG + tig0025962:54197-54216 Msa1426310:three_prime_UTR 30.0%
! TGATGATAATGTTGAGGTGT+TGG - tig0025962:52569-52588 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - tig0025962:52575-52594 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - tig0025962:52623-52642 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG - tig0025962:52746-52765 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + tig0025962:52829-52848 Msa1426310:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + tig0025962:52838-52857 Msa1426310:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - tig0025962:53043-53062 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + tig0025962:53142-53161 Msa1426310:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + tig0025962:53143-53162 Msa1426310:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + tig0025962:53350-53369 Msa1426310:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + tig0025962:53351-53370 Msa1426310:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + tig0025962:53365-53384 Msa1426310:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + tig0025962:53561-53580 Msa1426310:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + tig0025962:53608-53627 Msa1426310:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - tig0025962:53693-53712 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - tig0025962:53894-53913 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - tig0025962:53913-53932 None:intergenic 35.0%
! TGATGATAATGTTGAGGTGT+TGG - tig0025962:52569-52588 None:intergenic 35.0%
! TGAACGTGATGATAATGTTG+AGG - tig0025962:52575-52594 None:intergenic 35.0%
GGAACAAATATCTTAGTAGC+TGG - tig0025962:52623-52642 None:intergenic 35.0%
TTATTTAATGAAGGGGGCAA+TGG - tig0025962:52746-52765 None:intergenic 35.0%
GGAAACGAAGAAATTGAGAA+AGG + tig0025962:52829-52848 Msa1426310:CDS 35.0%
GAAATTGAGAAAGGATGCAA+TGG + tig0025962:52838-52857 Msa1426310:CDS 35.0%
AGACAATAGATACCTTGACT+TGG - tig0025962:53043-53062 None:intergenic 35.0%
! AAGCTGCATCAAGACTTTTA+AGG + tig0025962:53142-53161 Msa1426310:intron 35.0%
! AGCTGCATCAAGACTTTTAA+GGG + tig0025962:53143-53162 Msa1426310:intron 35.0%
TCACCTCTACGTTCAATTAA+AGG + tig0025962:53350-53369 Msa1426310:intron 35.0%
CACCTCTACGTTCAATTAAA+GGG + tig0025962:53351-53370 Msa1426310:intron 35.0%
ATTAAAGGGCTATGACTATG+AGG + tig0025962:53365-53384 Msa1426310:intron 35.0%
!! CATAAAGCACTGTGAATTAG+TGG + tig0025962:53561-53580 Msa1426310:intron 35.0%
!! GAAGAGTGTGTTTTGCAAAT+AGG + tig0025962:53608-53627 Msa1426310:intron 35.0%
AGGTGTTTCTTAAGCTAGAA+AGG - tig0025962:53693-53712 None:intergenic 35.0%
!! TTGGTTTGGAGGAGAAAAAT+TGG - tig0025962:53894-53913 None:intergenic 35.0%
ATCAAGATTTGAGCTAGCAT+TGG - tig0025962:53913-53932 None:intergenic 35.0%
TTGTCATTCTCTCTCTCTCT+CGG - tig0025962:52529-52548 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - tig0025962:52608-52627 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - tig0025962:52662-52681 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - tig0025962:52686-52705 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + tig0025962:52714-52733 Msa1426310:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + tig0025962:52793-52812 Msa1426310:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - tig0025962:53356-53375 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - tig0025962:53557-53576 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - tig0025962:53908-53927 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + tig0025962:54045-54064 Msa1426310:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + tig0025962:54088-54107 Msa1426310:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + tig0025962:54089-54108 Msa1426310:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + tig0025962:54095-54114 Msa1426310:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - tig0025962:54269-54288 None:intergenic 40.0%
TTGTCATTCTCTCTCTCTCT+CGG - tig0025962:52529-52548 None:intergenic 40.0%
!!! GTAGCTGGCCATGATTTTTT+TGG - tig0025962:52608-52627 None:intergenic 40.0%
GCAGAAGAAATGAGTGAAGT+TGG - tig0025962:52662-52681 None:intergenic 40.0%
GAAACAGCAAGTTCATCATC+TGG - tig0025962:52686-52705 None:intergenic 40.0%
CAGAATTCTCCACTAAACAG+AGG + tig0025962:52714-52733 Msa1426310:CDS 40.0%
TTTGAGTAGTTGCTGAACAG+CGG + tig0025962:52793-52812 Msa1426310:intron 40.0%
AGCCCTTTAATTGAACGTAG+AGG - tig0025962:53356-53375 None:intergenic 40.0%
TTCACAGTGCTTTATGCCTA+TGG - tig0025962:53557-53576 None:intergenic 40.0%
!! GATTTGAGCTAGCATTGGTT+TGG - tig0025962:53908-53927 None:intergenic 40.0%
TGAAGAGCTAAGTGTTTGCA+AGG + tig0025962:54045-54064 Msa1426310:exon 40.0%
ATTGAGGTGACATAAAACCC+AGG + tig0025962:54088-54107 Msa1426310:three_prime_UTR 40.0%
TTGAGGTGACATAAAACCCA+GGG + tig0025962:54089-54108 Msa1426310:three_prime_UTR 40.0%
TGACATAAAACCCAGGGTTA+AGG + tig0025962:54095-54114 Msa1426310:three_prime_UTR 40.0%
AATGTTGGAAGTTAACGGCA+AGG - tig0025962:54269-54288 None:intergenic 40.0%
! AACTCCTTTTTACTCGGGCA+GGG - tig0025962:52388-52407 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG - tig0025962:52389-52408 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG - tig0025962:52528-52547 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG - tig0025962:52647-52666 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - tig0025962:52648-52667 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - tig0025962:52726-52745 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG - tig0025962:52742-52761 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + tig0025962:52843-52862 Msa1426310:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + tig0025962:52844-52863 Msa1426310:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + tig0025962:52883-52902 Msa1426310:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - tig0025962:52916-52935 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - tig0025962:53518-53537 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + tig0025962:53630-53649 Msa1426310:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - tig0025962:53905-53924 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - tig0025962:54081-54100 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + tig0025962:54101-54120 Msa1426310:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + tig0025962:54102-54121 Msa1426310:three_prime_UTR 45.0%
! AACTCCTTTTTACTCGGGCA+GGG - tig0025962:52388-52407 None:intergenic 45.0%
! TAACTCCTTTTTACTCGGGC+AGG - tig0025962:52389-52408 None:intergenic 45.0%
TGTCATTCTCTCTCTCTCTC+GGG - tig0025962:52528-52547 None:intergenic 45.0%
! GAAGTTGGAGAGCATAGTGT+GGG - tig0025962:52647-52666 None:intergenic 45.0%
! TGAAGTTGGAGAGCATAGTG+TGG - tig0025962:52648-52667 None:intergenic 45.0%
TGGATGGTACCTCTGTTTAG+TGG - tig0025962:52726-52745 None:intergenic 45.0%
TTAATGAAGGGGGCAATGGA+TGG - tig0025962:52742-52761 None:intergenic 45.0%
TGAGAAAGGATGCAATGGTG+AGG + tig0025962:52843-52862 Msa1426310:CDS 45.0%
GAGAAAGGATGCAATGGTGA+GGG + tig0025962:52844-52863 Msa1426310:CDS 45.0%
ATTGCAACAGTTCCTGGCTT+TGG + tig0025962:52883-52902 Msa1426310:CDS 45.0%
CATGGCCTGTATGCCTTTAT+AGG - tig0025962:52916-52935 None:intergenic 45.0%
TAAAAGGCCTGCAAGTGTGT+AGG - tig0025962:53518-53537 None:intergenic 45.0%
! GGTGTTAGAGAGTGTGTTGT+CGG + tig0025962:53630-53649 Msa1426310:intron 45.0%
!! TTGAGCTAGCATTGGTTTGG+AGG - tig0025962:53905-53924 None:intergenic 45.0%
ATGTCACCTCAATGAAGCAG+TGG - tig0025962:54081-54100 None:intergenic 45.0%
AAAACCCAGGGTTAAGGAAG+AGG + tig0025962:54101-54120 Msa1426310:three_prime_UTR 45.0%
AAACCCAGGGTTAAGGAAGA+GGG + tig0025962:54102-54121 Msa1426310:three_prime_UTR 45.0%
GTCATTCTCTCTCTCTCTCG+GGG - tig0025962:52527-52546 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG + tig0025962:52808-52827 Msa1426310:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + tig0025962:52848-52867 Msa1426310:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + tig0025962:52856-52875 Msa1426310:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + tig0025962:52877-52896 Msa1426310:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + tig0025962:52900-52919 Msa1426310:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + tig0025962:52908-52927 Msa1426310:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - tig0025962:52934-52953 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + tig0025962:52934-52953 Msa1426310:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + tig0025962:52941-52960 Msa1426310:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - tig0025962:53027-53046 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + tig0025962:53028-53047 Msa1426310:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - tig0025962:53511-53530 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + tig0025962:53647-53666 Msa1426310:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + tig0025962:54072-54091 Msa1426310:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + tig0025962:54103-54122 Msa1426310:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - tig0025962:54263-54282 None:intergenic 50.0%
GTCATTCTCTCTCTCTCTCG+GGG - tig0025962:52527-52546 None:intergenic 50.0%
AACAGCGGTTGCAAAGCATG+TGG + tig0025962:52808-52827 Msa1426310:intron 50.0%
AAGGATGCAATGGTGAGGGT+AGG + tig0025962:52848-52867 Msa1426310:CDS 50.0%
AATGGTGAGGGTAGGATGCA+GGG + tig0025962:52856-52875 Msa1426310:CDS 50.0%
GGTGGTATTGCAACAGTTCC+TGG + tig0025962:52877-52896 Msa1426310:CDS 50.0%
CTTTGGCTGGTGGCCTATAA+AGG + tig0025962:52900-52919 Msa1426310:CDS 50.0%
! GGTGGCCTATAAAGGCATAC+AGG + tig0025962:52908-52927 Msa1426310:CDS 50.0%
GAAGCCACAAATCCAGGACA+TGG - tig0025962:52934-52953 None:intergenic 50.0%
TGTCCTGGATTTGTGGCTTC+TGG + tig0025962:52934-52953 Msa1426310:CDS 50.0%
GATTTGTGGCTTCTGGTGGT+AGG + tig0025962:52941-52960 Msa1426310:CDS 50.0%
GACTTGGAGTCAGTTGCAGT+TGG - tig0025962:53027-53046 None:intergenic 50.0%
! CTGCAACTGACTCCAAGTCA+AGG + tig0025962:53028-53047 Msa1426310:CDS 50.0%
CCTGCAAGTGTGTAGGCTAA+GGG - tig0025962:53511-53530 None:intergenic 50.0%
TGTCGGCACTCAAGCACTAT+TGG + tig0025962:53647-53666 Msa1426310:intron 50.0%
TACCAGCCACTGCTTCATTG+AGG + tig0025962:54072-54091 Msa1426310:three_prime_UTR 50.0%
AACCCAGGGTTAAGGAAGAG+GGG + tig0025962:54103-54122 Msa1426310:three_prime_UTR 50.0%
GGAAGTTAACGGCAAGGAAC+CGG - tig0025962:54263-54282 None:intergenic 50.0%
! GTTGGAGAGCATAGTGTGGG+AGG - tig0025962:52644-52663 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + tig0025962:52855-52874 Msa1426310:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + tig0025962:52887-52906 Msa1426310:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + tig0025962:52919-52938 Msa1426310:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + tig0025962:52927-52946 Msa1426310:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - tig0025962:52940-52959 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + tig0025962:52937-52956 Msa1426310:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + tig0025962:52954-52973 Msa1426310:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + tig0025962:52955-52974 Msa1426310:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + tig0025962:52966-52985 Msa1426310:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + tig0025962:52972-52991 Msa1426310:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + tig0025962:52982-53001 Msa1426310:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + tig0025962:53508-53527 Msa1426310:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - tig0025962:53512-53531 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - tig0025962:54077-54096 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - tig0025962:54108-54127 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - tig0025962:54109-54128 None:intergenic 55.0%
! GTTGGAGAGCATAGTGTGGG+AGG - tig0025962:52644-52663 None:intergenic 55.0%
CAATGGTGAGGGTAGGATGC+AGG + tig0025962:52855-52874 Msa1426310:CDS 55.0%
!! CAACAGTTCCTGGCTTTGGC+TGG + tig0025962:52887-52906 Msa1426310:CDS 55.0%
AAGGCATACAGGCCATGTCC+TGG + tig0025962:52919-52938 Msa1426310:CDS 55.0%
CAGGCCATGTCCTGGATTTG+TGG + tig0025962:52927-52946 Msa1426310:CDS 55.0%
CCACCAGAAGCCACAAATCC+AGG - tig0025962:52940-52959 None:intergenic 55.0%
CCTGGATTTGTGGCTTCTGG+TGG + tig0025962:52937-52956 Msa1426310:CDS 55.0%
TGGTGGTAGGTACAGACGAC+AGG + tig0025962:52954-52973 Msa1426310:CDS 55.0%
GGTGGTAGGTACAGACGACA+GGG + tig0025962:52955-52974 Msa1426310:CDS 55.0%
CAGACGACAGGGACAAAGCA+TGG + tig0025962:52966-52985 Msa1426310:CDS 55.0%
ACAGGGACAAAGCATGGACG+AGG + tig0025962:52972-52991 Msa1426310:CDS 55.0%
AGCATGGACGAGGTTGTCTC+CGG + tig0025962:52982-53001 Msa1426310:CDS 55.0%
CCCTTAGCCTACACACTTGC+AGG + tig0025962:53508-53527 Msa1426310:intron 55.0%
GCCTGCAAGTGTGTAGGCTA+AGG - tig0025962:53512-53531 None:intergenic 55.0%
CACCTCAATGAAGCAGTGGC+TGG - tig0025962:54077-54096 None:intergenic 55.0%
TGCCCCTCTTCCTTAACCCT+GGG - tig0025962:54108-54127 None:intergenic 55.0%
TTGCCCCTCTTCCTTAACCC+TGG - tig0025962:54109-54128 None:intergenic 55.0%
CGCACCCTGCCCGAGTAAAA+AGG + tig0025962:52381-52400 Msa1426310:five_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + tig0025962:52890-52909 Msa1426310:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - tig0025962:52898-52917 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + tig0025962:52988-53007 Msa1426310:CDS 60.0%
CGCACCCTGCCCGAGTAAAA+AGG + tig0025962:52381-52400 Msa1426310:five_prime_UTR 60.0%
!! CAGTTCCTGGCTTTGGCTGG+TGG + tig0025962:52890-52909 Msa1426310:CDS 60.0%
ATAGGCCACCAGCCAAAGCC+AGG - tig0025962:52898-52917 None:intergenic 60.0%
GACGAGGTTGTCTCCGGTAG+TGG + tig0025962:52988-53007 Msa1426310:CDS 60.0%
GGTGAGGGTAGGATGCAGGG+TGG + tig0025962:52859-52878 Msa1426310:CDS 65.0%
GGTGAGGGTAGGATGCAGGG+TGG + tig0025962:52859-52878 Msa1426310:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0025962 gene 52381 54349 52381 ID=Msa1426310;Name=Msa1426310
tig0025962 mRNA 52381 54349 52381 ID=Msa1426310-mRNA-1;Parent=Msa1426310;Name=Msa1426310-mRNA-1;_AED=0.35;_eAED=0.35;_QI=161|1|1|1|1|1|3|294|155
tig0025962 exon 52381 52735 52381 ID=Msa1426310-mRNA-1:exon:4817;Parent=Msa1426310-mRNA-1
tig0025962 exon 52813 53049 52813 ID=Msa1426310-mRNA-1:exon:4818;Parent=Msa1426310-mRNA-1
tig0025962 exon 54019 54349 54019 ID=Msa1426310-mRNA-1:exon:4819;Parent=Msa1426310-mRNA-1
tig0025962 five_prime_UTR 52381 52541 52381 ID=Msa1426310-mRNA-1:five_prime_utr;Parent=Msa1426310-mRNA-1
tig0025962 CDS 52542 52735 52542 ID=Msa1426310-mRNA-1:cds;Parent=Msa1426310-mRNA-1
tig0025962 CDS 52813 53049 52813 ID=Msa1426310-mRNA-1:cds;Parent=Msa1426310-mRNA-1
tig0025962 CDS 54019 54055 54019 ID=Msa1426310-mRNA-1:cds;Parent=Msa1426310-mRNA-1
tig0025962 three_prime_UTR 54056 54349 54056 ID=Msa1426310-mRNA-1:three_prime_utr;Parent=Msa1426310-mRNA-1
Gene Sequence

>Msa1426310

ATGACAACAGCTTTCTTCACAGTTCCAACACCTCAACATTATCATCACGTTCAATTGTACAAACCAAAAAAATCATGGCCAGCTACTAAGATATTTGTTCCTCCCACACTATGCTCTCCAACTTCACTCATTTCTTCTGCACCAGATGATGAACTTGCTGTTTCTGATCAATCAGAATTCTCCACTAAACAGAGCGGTTGCAAAGCATGTGGAAACGAAGAAATTGAGAAAGGATGCAATGGTGAGGGTAGGATGCAGGGTGGTATTGCAACAGTTCCTGGCTTTGGCTGGTGGCCTATAAAGGCATACAGGCCATGTCCTGGATTTGTGGCTTCTGGTGGTAGGTACAGACGACAGGGACAAAGCATGGACGAGGTTGTCTCCGGTAGTGGCAAAATTAAAACACCAACTGCAACTGACTCCAAGTCAAGTAACAAAAAGGATGGATCGAACAAATTGAAGAGCTAA

Protein sequence

>Msa1426310

MTTAFFTVPTPQHYHHVQLYKPKKSWPATKIFVPPTLCSPTSLISSAPDDELAVSDQSEFSTKQSGCKACGNEEIEKGCNGEGRMQGGIATVPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGSGKIKTPTATDSKSSNKKDGSNKLKS*