AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542290 MtrunA17_Chr4g0022171 99.362 470 3 0 1 470 1 470 0.0 964
Msa0542290 MtrunA17_Chr2g0324061 79.665 477 83 6 1 470 1 470 0.0 730
Msa0542290 MtrunA17_Chr7g0249421 50.225 444 183 8 51 464 50 485 2.11e-142 417
Msa0542290 MtrunA17_Chr7g0221691 54.790 334 143 4 54 380 86 418 4.09e-130 384
Msa0542290 MtrunA17_Chr7g0243571 43.902 410 197 7 62 468 57 436 7.08e-115 345
Msa0542290 MtrunA17_Chr8g0342431 45.050 404 156 10 1 370 1 372 8.98e-107 323
Msa0542290 MtrunA17_Chr7g0272061 45.679 324 169 3 58 379 52 370 1.06e-102 311
Msa0542290 MtrunA17_Chr4g0004971 46.855 318 157 4 56 371 37 344 3.26e-102 309
Msa0542290 MtrunA17_Chr1g0192421 44.272 323 166 3 49 370 41 350 4.33e-100 304
Msa0542290 MtrunA17_Chr4g0067711 46.382 304 147 4 69 370 63 352 1.29e-99 303
Msa0542290 MtrunA17_Chr2g0295401 46.885 305 148 4 67 370 62 353 4.75e-99 301
Msa0542290 MtrunA17_Chr1g0151781 46.965 313 152 3 61 373 33 331 5.69e-90 278
Msa0542290 MtrunA17_Chr6g0486661 29.524 315 164 9 79 372 106 383 1.60e-26 113
Msa0542290 MtrunA17_Chr4g0066371 26.646 319 177 8 79 378 68 348 6.16e-26 109
Msa0542290 MtrunA17_Chr5g0396731 33.582 268 122 9 74 332 80 300 6.85e-24 102
Msa0542290 MtrunA17_Chr2g0286951 27.219 338 188 10 79 396 69 368 1.86e-23 102
Msa0542290 MtrunA17_Chr3g0136711 29.577 284 137 9 98 378 67 290 2.92e-19 88.2
Msa0542290 MtrunA17_Chr1g0212961 30.435 253 118 9 96 347 126 321 3.05e-19 89.0
Msa0542290 MtrunA17_Chr6g0483411 30.045 223 117 7 165 369 117 318 7.28e-19 87.4
Msa0542290 MtrunA17_Chr1g0150451 30.677 251 120 7 98 347 110 307 7.40e-19 87.4
Msa0542290 MtrunA17_Chr8g0389921 28.958 259 153 7 74 329 156 386 2.93e-18 87.0
Msa0542290 MtrunA17_Chr3g0135961 29.688 256 137 10 77 329 269 484 4.88e-18 86.7
Msa0542290 MtrunA17_Chr4g0070871 27.888 251 135 8 84 329 236 445 7.50e-18 86.3
Msa0542290 MtrunA17_Chr3g0112291 34.595 185 92 6 159 330 153 321 1.68e-17 84.3
Msa0542290 MtrunA17_Chr5g0435721 29.151 271 127 9 74 330 200 419 2.21e-16 81.3
Msa0542290 MtrunA17_Chr1g0150781 27.869 244 135 6 89 329 283 488 1.92e-15 78.6
Msa0542290 MtrunA17_Chr2g0317021 35.556 180 90 8 193 370 177 332 2.10e-15 77.4
Msa0542290 MtrunA17_Chr8g0360351 34.463 177 98 7 172 347 106 265 2.52e-15 76.3
Msa0542290 MtrunA17_Chr1g0175381 26.115 314 175 12 93 378 76 360 2.69e-15 77.4
Msa0542290 MtrunA17_Chr3g0089711 27.245 323 155 14 91 371 63 347 5.65e-15 76.3
Msa0542290 MtrunA17_Chr3g0089721 27.245 323 155 14 91 371 63 347 7.10e-15 75.9
Msa0542290 MtrunA17_Chr2g0299981 24.345 267 141 8 82 325 248 476 2.66e-14 75.1
Msa0542290 MtrunA17_Chr1g0194191 28.030 264 134 11 96 349 118 335 5.06e-14 73.6
Msa0542290 MtrunA17_Chr4g0050381 30.645 186 108 8 166 347 92 260 5.63e-14 72.4
Msa0542290 MtrunA17_Chr3g0136811 28.826 281 158 10 71 330 28 287 1.03e-13 72.4
Msa0542290 MtrunA17_Chr1g0158781 28.870 239 113 7 96 330 145 330 2.29e-13 71.6
Msa0542290 MtrunA17_Chr5g0407161 25.833 240 118 7 96 330 124 308 4.15e-13 70.9
Msa0542290 MtrunA17_Chr3g0126511 31.481 162 93 4 169 329 162 306 4.65e-13 70.5
Msa0542290 MtrunA17_Chr8g0371321 26.087 253 138 10 168 378 116 361 5.66e-13 70.5
Msa0542290 MtrunA17_Chr7g0256751 27.660 282 145 11 91 349 64 309 8.36e-13 70.1
Msa0542290 MtrunA17_Chr5g0430481 25.439 342 195 11 35 370 87 374 1.01e-12 69.7
Msa0542290 MtrunA17_Chr7g0250061 28.879 232 117 12 197 391 149 369 1.93e-12 68.6
Msa0542290 MtrunA17_Chr1g0150071 27.402 281 162 9 71 330 28 287 4.70e-12 67.4
Msa0542290 MtrunA17_Chr3g0089691 26.966 267 124 10 185 392 45 299 5.70e-12 66.6
Msa0542290 MtrunA17_Chr3g0144111 27.711 166 96 4 169 329 43 189 1.08e-11 65.1
Msa0542290 MtrunA17_Chr1g0171571 28.182 220 129 7 168 380 457 654 1.37e-11 67.0
Msa0542290 MtrunA17_Chr2g0295991 26.667 270 153 9 95 332 165 421 4.43e-11 65.1
Msa0542290 MtrunA17_Chr1g0207571 24.107 336 192 13 89 390 54 360 4.99e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542290 AT4G03415.1 76.261 476 99 6 1 470 1 468 0.0 672
Msa0542290 AT4G03415.3 76.261 476 99 6 1 470 1 468 0.0 672
Msa0542290 AT4G03415.2 76.261 476 99 6 1 470 1 468 0.0 672
Msa0542290 AT1G03590.1 68.499 473 127 6 1 466 1 458 0.0 619
Msa0542290 AT1G16220.1 48.098 447 210 6 35 463 35 477 1.84e-145 425
Msa0542290 AT3G02750.2 47.400 500 214 11 1 463 1 488 1.06e-139 410
Msa0542290 AT3G02750.1 47.400 500 214 11 1 463 1 488 1.06e-139 410
Msa0542290 AT1G79630.1 47.758 446 181 8 57 463 58 490 7.46e-138 406
Msa0542290 AT1G79630.8 47.758 446 181 8 57 463 54 486 1.46e-137 405
Msa0542290 AT5G36250.1 48.252 429 169 7 51 463 52 443 1.44e-133 393
Msa0542290 AT3G02750.3 46.888 482 180 9 51 463 49 523 1.27e-131 391
Msa0542290 AT5G36250.2 46.953 443 168 8 51 463 52 457 9.59e-130 384
Msa0542290 AT1G79630.2 47.115 416 168 8 87 463 18 420 8.14e-123 365
Msa0542290 AT1G79630.7 47.115 416 168 8 87 463 18 420 8.14e-123 365
Msa0542290 AT1G79630.6 51.948 308 124 3 167 463 86 380 1.28e-109 330
Msa0542290 AT1G79630.3 51.948 308 124 3 167 463 86 380 1.28e-109 330
Msa0542290 AT1G79630.4 51.948 308 124 3 167 463 86 380 1.28e-109 330
Msa0542290 AT1G79630.5 51.948 308 124 3 167 463 86 380 1.28e-109 330
Msa0542290 AT5G01700.2 48.094 341 161 4 58 397 39 364 7.78e-104 315
Msa0542290 AT5G01700.1 49.235 327 150 4 72 397 4 315 5.81e-103 311
Msa0542290 AT5G27930.1 43.658 339 178 3 32 369 27 353 3.45e-101 308
Msa0542290 AT5G27930.2 43.658 339 178 3 32 369 27 353 3.45e-101 308
Msa0542290 AT3G05640.2 45.541 314 152 3 58 370 54 349 3.91e-101 307
Msa0542290 AT3G05640.1 45.541 314 152 3 58 370 54 349 3.91e-101 307
Msa0542290 AT3G05640.3 45.541 314 152 3 58 370 54 349 3.91e-101 307
Msa0542290 AT5G36250.3 52.297 283 122 4 51 320 52 334 7.42e-101 306
Msa0542290 AT3G16800.2 42.208 308 156 4 65 370 61 348 6.55e-84 263
Msa0542290 AT3G16800.1 42.208 308 156 4 65 370 61 348 6.55e-84 263
Msa0542290 AT3G16800.3 42.208 308 156 4 65 370 61 348 6.55e-84 263
Msa0542290 AT5G27930.3 44.788 259 130 3 60 317 55 301 4.00e-80 252
Msa0542290 AT5G26010.1 44.702 302 142 5 73 373 50 327 1.21e-79 251
Msa0542290 AT4G32950.1 39.118 363 171 7 17 377 9 323 6.90e-78 246
Msa0542290 AT3G16800.4 41.026 273 140 3 99 370 1 253 1.46e-71 227
Msa0542290 AT3G16800.6 41.026 273 140 3 99 370 1 253 1.46e-71 227
Msa0542290 AT4G32950.2 38.284 303 137 7 17 317 9 263 6.59e-58 192
Msa0542290 AT3G16800.5 35.754 179 93 4 65 241 61 219 1.18e-32 124
Msa0542290 AT2G20050.2 29.430 316 166 9 79 375 125 402 5.62e-29 121
Msa0542290 AT2G20050.1 29.430 316 166 9 79 375 125 402 5.89e-29 121
Msa0542290 AT3G06270.1 28.041 296 151 9 79 353 70 324 1.21e-22 99.4
Msa0542290 AT3G11410.1 33.333 276 108 11 74 324 112 336 1.85e-22 99.4
Msa0542290 AT5G10740.1 35.417 192 102 5 161 349 93 265 1.72e-20 93.2
Msa0542290 AT5G10740.2 35.417 192 102 5 161 349 93 265 1.72e-20 93.2
Msa0542290 AT5G59220.1 31.541 279 114 11 74 330 119 342 2.48e-20 93.2
Msa0542290 AT5G24940.1 34.737 190 106 5 161 349 93 265 3.54e-20 93.2
Msa0542290 AT1G07430.1 28.772 285 133 9 74 338 128 362 5.23e-20 92.8
Msa0542290 AT4G28400.3 37.778 180 94 9 169 347 82 244 1.84e-19 88.2
Msa0542290 AT2G34740.1 36.667 210 104 10 166 370 150 335 2.84e-19 89.4
Msa0542290 AT4G28400.1 37.778 180 94 9 169 347 104 266 3.25e-19 88.2
Msa0542290 AT1G72770.4 33.603 247 113 11 96 329 238 446 1.07e-18 89.0
Msa0542290 AT1G72770.1 33.603 247 113 11 96 329 238 446 1.07e-18 89.0
Msa0542290 AT1G72770.3 33.603 247 113 11 96 329 238 446 1.07e-18 89.0
Msa0542290 AT4G31750.1 32.547 212 120 6 161 371 93 282 1.32e-18 87.0
Msa0542290 AT4G31750.3 32.547 212 120 6 161 371 93 282 1.32e-18 87.0
Msa0542290 AT4G31750.2 32.710 214 117 7 161 371 93 282 1.38e-18 86.7
Msa0542290 AT1G78200.5 34.239 184 106 5 167 349 54 223 9.39e-18 82.8
Msa0542290 AT1G78200.4 34.239 184 106 5 167 349 54 223 9.39e-18 82.8
Msa0542290 AT1G78200.1 34.239 184 106 5 167 349 99 268 1.09e-17 83.6
Msa0542290 AT1G78200.3 34.239 184 106 5 167 349 99 268 1.09e-17 83.6
Msa0542290 AT1G78200.2 34.239 184 106 5 167 349 99 268 1.09e-17 83.6
Msa0542290 AT1G43900.1 30.400 250 119 7 96 344 154 349 2.96e-16 80.5
Msa0542290 AT5G57050.1 29.487 234 123 7 96 329 160 351 5.01e-16 80.5
Msa0542290 AT5G57050.2 29.487 234 123 7 96 329 120 311 5.35e-16 80.1
Msa0542290 AT2G20630.1 36.066 183 99 9 167 348 98 263 6.00e-16 78.6
Msa0542290 AT4G26080.1 30.769 234 118 9 96 329 172 361 9.01e-16 79.7
Msa0542290 AT2G20630.2 38.217 157 80 7 193 348 123 263 1.04e-15 77.8
Msa0542290 AT1G34750.2 31.606 193 112 8 159 349 93 267 1.34e-15 77.4
Msa0542290 AT1G34750.1 31.606 193 112 8 159 349 93 267 1.34e-15 77.4
Msa0542290 AT1G34750.3 31.606 193 112 8 159 349 93 267 1.34e-15 77.4
Msa0542290 AT5G53140.1 28.287 251 126 7 98 347 134 331 2.21e-15 78.6
Msa0542290 AT5G53140.2 28.287 251 126 7 98 347 134 331 2.21e-15 78.6
Msa0542290 AT1G17550.1 30.204 245 117 10 96 325 237 442 9.67e-15 77.0
Msa0542290 AT1G17550.2 30.204 245 117 10 96 325 237 442 9.67e-15 77.0
Msa0542290 AT5G51760.2 31.553 206 113 6 157 350 153 342 3.63e-14 74.3
Msa0542290 AT5G51760.1 31.553 206 113 6 157 350 183 372 4.05e-14 74.3
Msa0542290 AT5G06750.3 25.559 313 172 12 94 374 80 363 6.49e-14 73.6
Msa0542290 AT5G06750.1 25.559 313 172 12 94 374 80 363 6.49e-14 73.6
Msa0542290 AT4G28400.2 37.908 153 77 9 169 320 104 239 2.30e-13 70.5
Msa0542290 AT3G15260.2 33.333 186 103 8 166 347 104 272 2.32e-13 70.9
Msa0542290 AT3G15260.1 33.333 186 103 8 166 347 104 272 2.32e-13 70.9
Msa0542290 AT1G22280.1 31.863 204 115 8 167 369 100 280 2.85e-13 70.5
Msa0542290 AT1G22280.3 31.863 204 115 8 167 369 106 286 2.86e-13 70.5
Msa0542290 AT1G18030.1 25.792 221 125 6 167 369 149 348 1.04e-12 69.7
Msa0542290 AT3G62260.3 28.409 264 130 9 96 347 27 243 5.50e-12 67.0
Msa0542290 AT5G06750.2 25.984 254 154 9 153 374 30 281 7.91e-12 66.6
Msa0542290 AT3G62260.2 28.309 272 132 10 90 347 111 333 8.05e-12 67.4
Msa0542290 AT3G62260.1 28.309 272 132 10 90 347 110 332 8.16e-12 67.0
Msa0542290 AT1G07160.1 28.502 207 130 5 164 370 188 376 1.27e-11 66.6
Msa0542290 AT1G34750.4 31.792 173 96 9 159 329 93 245 1.37e-11 65.1
Msa0542290 AT3G17250.1 24.911 281 158 10 96 368 158 393 2.22e-11 66.2
Msa0542290 AT1G48040.1 27.344 256 128 10 96 341 116 323 2.23e-11 65.9
Msa0542290 AT3G51470.1 25.735 272 134 10 70 330 76 290 2.72e-11 65.5
Msa0542290 AT2G40860.4 27.419 248 145 8 141 380 340 560 3.04e-11 65.9
Msa0542290 AT2G40860.2 28.899 218 128 7 141 350 438 636 3.12e-11 66.2
Msa0542290 AT2G40860.1 27.419 248 145 8 141 380 438 658 4.22e-11 65.9
Msa0542290 AT3G51470.2 25.556 270 137 9 70 330 32 246 4.28e-11 64.3

Find 151 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGACTTAAAGAGAAATTT+TGG 0.163208 4_1:+26894628 Msa0542290:five_prime_UTR
CAGTAAAATTGCTTTCATTT+TGG 0.208933 4_1:+26895263 Msa0542290:CDS
AATCTCTTCATGGGATATAT+TGG 0.215176 4_1:+26895604 Msa0542290:CDS
CATGGAGTCATTGCTGTCTT+TGG 0.215963 4_1:-26895650 None:intergenic
TGCTCTAATCATATTATCTT+AGG 0.241529 4_1:-26898345 None:intergenic
GTTGTAAAGTAACTTATATT+TGG 0.272280 4_1:+26894609 Msa0542290:five_prime_UTR
ACCATCCAGAGCAACCATTC+TGG 0.309209 4_1:+26897682 Msa0542290:CDS
ATCTCTTCATGGGATATATT+GGG 0.314474 4_1:+26895605 Msa0542290:CDS
AAACTCGAAGTGGTTTGATT+TGG 0.316314 4_1:+26898064 Msa0542290:three_prime_UTR
TCCAGAATACACACATTATA+TGG 0.326389 4_1:-26894748 None:intergenic
AACTCGAAGTGGTTTGATTT+GGG 0.333922 4_1:+26898065 Msa0542290:three_prime_UTR
CTACAGAAGCAGTCTAGATT+TGG 0.335148 4_1:-26895460 None:intergenic
TGATTTGGGTAATTAGTTTA+CGG 0.341139 4_1:+26898079 Msa0542290:three_prime_UTR
CCAGGGTTCAAATCTCTTCA+TGG 0.346038 4_1:+26895594 Msa0542290:intron
AGAATCAGATTATGATGAAC+AGG 0.348246 4_1:+26897645 Msa0542290:CDS
AATGACCCACTTGGCAAATC+AGG 0.352742 4_1:-26895703 None:intergenic
GGGAGTAATGTGGCAGCGAC+TGG 0.368370 4_1:+26898312 Msa0542290:three_prime_UTR
ATCATCAGCAGCAAGGATTC+TGG 0.370635 4_1:+26897525 Msa0542290:CDS
ACCATATAATGTGTGTATTC+TGG 0.372095 4_1:+26894747 Msa0542290:five_prime_UTR
TGCTAGGTAAGGATGATAAT+TGG 0.373974 4_1:-26894929 None:intergenic
TTAGCAATGGCTAGGGCGTT+TGG 0.378040 4_1:+26895905 Msa0542290:CDS
TGTCCATCATCTGATTCAAC+TGG 0.378270 4_1:-26897709 None:intergenic
TTCATTGTTCTTGCGTCAGA+TGG 0.392602 4_1:+26896004 Msa0542290:CDS
GATTTCTGCTTGAAGGAGTA+TGG 0.392742 4_1:+26895929 Msa0542290:CDS
AGATCAAAACTGGTTAGGTT+TGG 0.408331 4_1:+26897840 Msa0542290:CDS
GATCCTTCTTCAGAAAATCT+AGG 0.412334 4_1:-26897898 None:intergenic
GTTTGGAGATTTCTGCTTGA+AGG 0.422853 4_1:+26895922 Msa0542290:CDS
CTCTTGAATCGAAACAAAAT+AGG 0.424477 4_1:+26895290 Msa0542290:CDS
AGCAGCCGGTGAGAAAATTC+AGG 0.426271 4_1:-26895965 None:intergenic
TTTCACTAATGGAAAGAGTC+GGG 0.431687 4_1:+26894956 Msa0542290:CDS
CCATCCAGAGCAACCATTCT+GGG 0.439997 4_1:+26897683 Msa0542290:CDS
ACATTTATGTCTTGATTTAG+TGG 0.442410 4_1:+26898162 Msa0542290:three_prime_UTR
TGGGGATTCTCGAGCAATCA+TGG 0.443019 4_1:+26895624 Msa0542290:CDS
ATTCAACTGGATTCCCAGAA+TGG 0.448330 4_1:-26897696 None:intergenic
GGGTCGCAAGGGAATTAATC+AGG 0.449317 4_1:+26895001 Msa0542290:CDS
TGTGGTGTCTTTGATGGTCA+TGG 0.456999 4_1:+26895196 Msa0542290:CDS
ATCGACAGACACTGCTCCGT+TGG 0.458733 4_1:-26897791 None:intergenic
CTTCAGAAAATCTAGGAAGT+TGG 0.460649 4_1:-26897891 None:intergenic
GATTCCCAGAATGGTTGCTC+TGG 0.461681 4_1:-26897687 None:intergenic
TGCTTCGAAATTTGTTTCTG+TGG 0.462580 4_1:+26894858 Msa0542290:CDS
GGTGAAGATCAAAACTGGTT+AGG 0.462884 4_1:+26897835 Msa0542290:CDS
TTCGTGCATATTTACACAGC+AGG 0.465091 4_1:+26894980 Msa0542290:CDS
ACCACAAAATATCGTATCTT+CGG 0.468013 4_1:-26895179 None:intergenic
CATCGGGTGAAGATCAAAAC+TGG 0.468748 4_1:+26897830 Msa0542290:CDS
AATATGATTAGAGCAAATCT+TGG 0.468969 4_1:+26898353 Msa0542290:three_prime_UTR
TCTTGAATCGAGTGTTTACC+AGG 0.472160 4_1:-26897967 None:intergenic
CGTGAGATCTGTACTGGAAA+GGG 0.472923 4_1:+26894706 Msa0542290:five_prime_UTR
CCCAGAATGGTTGCTCTGGA+TGG 0.475678 4_1:-26897683 None:intergenic
GAAGCAAGAAATTCAAGAGT+TGG 0.482013 4_1:-26897920 None:intergenic
GTAAAGTTCCTTCTCAAAGA+TGG 0.483162 4_1:-26897742 None:intergenic
ATTGAACATGTTAGATCCGC+GGG 0.484081 4_1:-26898109 None:intergenic
TCTGGTAAATTCAGCTGCTC+GGG 0.485878 4_1:+26897543 Msa0542290:CDS
AGCCACACCCTAGGAACTTC+AGG 0.487256 4_1:-26895860 None:intergenic
TTCTGGTAAATTCAGCTGCT+CGG 0.491412 4_1:+26897542 Msa0542290:CDS
TAAATTCAGCTGCTCGGGAA+TGG 0.495611 4_1:+26897548 Msa0542290:CDS
AACCCTGGTGCGTCATCAAA+AGG 0.497791 4_1:-26895884 None:intergenic
AAGATGAGCCTGAAGTTCCT+AGG 0.498159 4_1:+26895852 Msa0542290:CDS
AATTATCATCCTTACCTAGC+AGG 0.505801 4_1:+26894931 Msa0542290:CDS
TCGACAGACACTGCTCCGTT+GGG 0.507468 4_1:-26897790 None:intergenic
TTCTCAGACTCACCACAGTC+TGG 0.510311 4_1:-26895346 None:intergenic
ATCTGTGACTGTAGTAAAGC+AGG 0.511946 4_1:+26895492 Msa0542290:CDS
CAAAACTGGTTAGGTTTGGA+AGG 0.513854 4_1:+26897844 Msa0542290:CDS
AAATTATATATTTATGAGAT+CGG 0.514396 4_1:+26898288 Msa0542290:three_prime_UTR
TTATTGCTCTAGCTTTGTAA+AGG 0.514552 4_1:+26893736 Msa0542290:five_prime_UTR
CAGGGTTCAAATCTCTTCAT+GGG 0.514984 4_1:+26895595 Msa0542290:intron
CACCAGGGTTAGCAATGGCT+AGG 0.517626 4_1:+26895897 Msa0542290:CDS
GTTGAAGATGAAGCAGCATC+GGG 0.521303 4_1:+26897814 Msa0542290:CDS
AAACCACTTCGAGTTTGTCT+AGG 0.521629 4_1:-26898057 None:intergenic
GTCGAAGTACTTGTAGCAGC+GGG 0.528583 4_1:+26894808 Msa0542290:CDS
AGCCTGAAGTTCCTAGGGTG+TGG 0.534994 4_1:+26895858 Msa0542290:CDS
ATTTACACAGCAGGGTCGCA+AGG 0.535677 4_1:+26894989 Msa0542290:CDS
TCATTGTTCTTGCGTCAGAT+GGG 0.536426 4_1:+26896005 Msa0542290:CDS
AGTGAAAATCCTGCTAGGTA+AGG 0.538054 4_1:-26894940 None:intergenic
TGTTGAAGATGAAGCAGCAT+CGG 0.540658 4_1:+26897813 Msa0542290:CDS
CTTGAATTTCTTGCTTCATG+AGG 0.542683 4_1:+26897926 Msa0542290:exon
CAGACAAAACTTGCTTCAAA+CGG 0.544074 4_1:+26895314 Msa0542290:CDS
AAATACTTCTTCAAAATCCG+TGG 0.545645 4_1:-26894574 None:intergenic
TATATATTTATGAGATCGGA+GGG 0.547151 4_1:+26898292 Msa0542290:three_prime_UTR
TGCGAACGTGAGATCTGTAC+TGG 0.547512 4_1:+26894700 Msa0542290:five_prime_UTR
TGTGGAGTTCAGTTTATCCT+CGG 0.553472 4_1:-26895380 None:intergenic
ACTTGTAGCAGCGGGAGCAA+TGG 0.557749 4_1:+26894816 Msa0542290:CDS
GATCTCTGTCTGTGAGCAGC+CGG 0.558467 4_1:-26895979 None:intergenic
CAAAGACAGCAATGACTCCA+TGG 0.558918 4_1:+26895651 Msa0542290:CDS
AATCAAGCAGTGCAAGGGTA+GGG 0.560069 4_1:+26895817 Msa0542290:CDS
AATGAAGTAATGCTTGCTGC+AGG 0.560412 4_1:-26893706 None:intergenic
GGAGTAATGTGGCAGCGACT+GGG 0.561191 4_1:+26898313 Msa0542290:three_prime_UTR
ATATGATTAGAGCAAATCTT+GGG 0.561419 4_1:+26898354 Msa0542290:three_prime_UTR
AATCTAGACTGCTTCTGTAG+TGG 0.563578 4_1:+26895463 Msa0542290:CDS
ATCTTGTTGCGCGTAAAGTG+AGG 0.564465 4_1:+26895230 Msa0542290:CDS
GGGAATTAATCAGGATGCCA+TGG 0.565143 4_1:+26895010 Msa0542290:CDS
ACGTGAGATCTGTACTGGAA+AGG 0.565989 4_1:+26894705 Msa0542290:five_prime_UTR
AGACCATGGACAAAGAGCTT+AGG 0.566360 4_1:+26895431 Msa0542290:CDS
TAACTGTTTATTGCAGTACC+TGG 0.566515 4_1:+26897949 Msa0542290:three_prime_UTR
AATCCAGTTGAATCAGATGA+TGG 0.567117 4_1:+26897706 Msa0542290:CDS
CAGCGGGAGCAATGGAGAGA+TGG 0.567234 4_1:+26894824 Msa0542290:CDS
ATCAGATGATGGACAAAAGT+CGG 0.568179 4_1:+26897717 Msa0542290:CDS
TCTCTTCATGGGATATATTG+GGG 0.568937 4_1:+26895606 Msa0542290:CDS
ACCAGGGTTAGCAATGGCTA+GGG 0.571256 4_1:+26895898 Msa0542290:CDS
GGAAAGAATCAAGCAGTGCA+AGG 0.573684 4_1:+26895811 Msa0542290:CDS
TGTGCTCCAGACACTCTGTA+AGG 0.576452 4_1:+26898260 Msa0542290:three_prime_UTR
AAAACTGGTTAGGTTTGGAA+GGG 0.578580 4_1:+26897845 Msa0542290:CDS
AATTGAACATGTTAGATCCG+CGG 0.578821 4_1:-26898110 None:intergenic
AGATGAGCCTGAAGTTCCTA+GGG 0.581249 4_1:+26895853 Msa0542290:CDS
AGACCTAAGCTCTTTGTCCA+TGG 0.584175 4_1:-26895434 None:intergenic
GTGGCAGCGACTGGGTGCAT+TGG 0.584956 4_1:+26898321 Msa0542290:three_prime_UTR
AGTCGAAGTACTTGTAGCAG+CGG 0.586885 4_1:+26894807 Msa0542290:CDS
GGGGATTCTCGAGCAATCAT+GGG 0.587725 4_1:+26895625 Msa0542290:CDS
CCATTAGTGAAAATCCTGCT+AGG 0.589167 4_1:-26894945 None:intergenic
ATCAGGATGCCATGGTTGTG+TGG 0.596198 4_1:+26895018 Msa0542290:CDS
CATTGTTCTTGCGTCAGATG+GGG 0.596634 4_1:+26896006 Msa0542290:CDS
GAATCAAGCAGTGCAAGGGT+AGG 0.597342 4_1:+26895816 Msa0542290:CDS
GAAAGAATCAAGCAGTGCAA+GGG 0.598000 4_1:+26895812 Msa0542290:CDS
GGTGGTTGAGATAGTATCAT+CGG 0.598952 4_1:+26897492 Msa0542290:CDS
AAACCTAGACAAACTCGAAG+TGG 0.598952 4_1:+26898054 Msa0542290:three_prime_UTR
CTTGCTGCTGATGATCGTGT+TGG 0.601429 4_1:-26897517 None:intergenic
TCCGTTCAAATAGCGTCCCA+CGG 0.601606 4_1:+26894557 Msa0542290:five_prime_UTR
TCAAAAGGCAGCCACACCCT+AGG 0.606675 4_1:-26895869 None:intergenic
GCCCTAGCCATTGCTAACCC+TGG 0.606931 4_1:-26895899 None:intergenic
TTATATATTTATGAGATCGG+AGG 0.609226 4_1:+26898291 Msa0542290:three_prime_UTR
AAACTGGTTAGGTTTGGAAG+GGG 0.609381 4_1:+26897846 Msa0542290:CDS
AGTCGGAGCCATCTTTGAGA+AGG 0.610231 4_1:+26897734 Msa0542290:CDS
AGGATAAACTGAACTCCACA+TGG 0.618329 4_1:+26895383 Msa0542290:CDS
TTCACTAATGGAAAGAGTCG+GGG 0.619236 4_1:+26894957 Msa0542290:CDS
TCTGTGGACAAAAGAGAGCA+AGG 0.624356 4_1:+26894874 Msa0542290:CDS
TTTACACAGCAGGGTCGCAA+GGG 0.624371 4_1:+26894990 Msa0542290:CDS
TGAGAAGGATTGTTCTGCCG+AGG 0.624451 4_1:+26895363 Msa0542290:CDS
TCTTGTTGCGCGTAAAGTGA+GGG 0.625856 4_1:+26895231 Msa0542290:CDS
TATGAAAGCTTCTCTCCATG+TGG 0.626211 4_1:-26895398 None:intergenic
AGTCAACTGAATTGCCACCA+TGG 0.629372 4_1:-26895668 None:intergenic
TCCGTGGGACGCTATTTGAA+CGG 0.632474 4_1:-26894558 None:intergenic
TCGTGCATATTTACACAGCA+GGG 0.634119 4_1:+26894981 Msa0542290:CDS
ACTGGTGAATTAGGCTACCA+AGG 0.634135 4_1:-26898028 None:intergenic
TCAGGATGCCATGGTTGTGT+GGG 0.634495 4_1:+26895019 Msa0542290:CDS
AATACTTCTTCAAAATCCGT+GGG 0.635830 4_1:-26894573 None:intergenic
TTTGATGGTCATGGTCCACA+AGG 0.637535 4_1:+26895205 Msa0542290:CDS
AGACTGTGGTGAGTCTGAGA+AGG 0.641591 4_1:+26895348 Msa0542290:CDS
TTGGTTGGGAATAGGAGAAG+CGG 0.643491 4_1:+26895790 Msa0542290:intron
ACTTACTTCCCACACAACCA+TGG 0.645722 4_1:-26895027 None:intergenic
CATAAAAGCATACAAGACCA+TGG 0.649143 4_1:+26895417 Msa0542290:CDS
AAACAAATTTCGAAGCAAGA+CGG 0.655211 4_1:-26894852 None:intergenic
TCAGAAGAAAACGAGCCCAA+CGG 0.659752 4_1:+26897775 Msa0542290:CDS
AGTTTACGGTTTCAAACCCG+CGG 0.666192 4_1:+26898093 Msa0542290:three_prime_UTR
GAATCAGATTATGATGAACA+GGG 0.666739 4_1:+26897646 Msa0542290:CDS
AGAATACACACATTATATGG+TGG 0.669023 4_1:-26894745 None:intergenic
TGACGCACCAGGGTTAGCAA+TGG 0.672958 4_1:+26895892 Msa0542290:CDS
CAACACGATCATCAGCAGCA+AGG 0.675811 4_1:+26897518 Msa0542290:CDS
ATGAAGTAATGCTTGCTGCA+GGG 0.684169 4_1:-26893705 None:intergenic
CGCGCAACAAGATGACCTTG+TGG 0.685405 4_1:-26895220 None:intergenic
TGAGATCGGAGGGAGTAATG+TGG 0.686498 4_1:+26898302 Msa0542290:three_prime_UTR
CGGAACATAACACCAGACTG+TGG 0.709411 4_1:+26895334 Msa0542290:CDS
AGACAGCAATGACTCCATGG+TGG 0.756556 4_1:+26895654 Msa0542290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTACTTTTTTATTTTTC+TGG + chr4_1:26896079-26896098 Msa0542290:intron 10.0%
!! TAAGAAAATATAATTAGTAT+AGG + chr4_1:26896177-26896196 Msa0542290:intron 10.0%
!! CAAATTAATTAAAAAATAGA+TGG - chr4_1:26896663-26896682 None:intergenic 10.0%
!! AAATTATATATTTATGAGAT+CGG + chr4_1:26898288-26898307 Msa0542290:three_prime_UTR 10.0%
!! ATTAATATCATGTTTCAAAT+AGG - chr4_1:26894251-26894270 None:intergenic 15.0%
!! GATTGTATATTAACTATTAT+TGG + chr4_1:26894498-26894517 Msa0542290:intron 15.0%
!!! TCTTTTTTTAAGTTATATGA+GGG + chr4_1:26895092-26895111 Msa0542290:intron 15.0%
!! CAAAAATACAGATAATAATT+AGG - chr4_1:26895146-26895165 None:intergenic 15.0%
!!! ATTATTATCTGTATTTTTGT+AGG + chr4_1:26895147-26895166 Msa0542290:intron 15.0%
!! GAAATTAAGAAAAACATAAA+AGG - chr4_1:26895566-26895585 None:intergenic 15.0%
!! TATACTAAAAACTATGATAA+GGG - chr4_1:26897384-26897403 None:intergenic 15.0%
!! TTATACTAAAAACTATGATA+AGG - chr4_1:26897385-26897404 None:intergenic 15.0%
!!! TAACATGTTCAATTTTTTTT+TGG + chr4_1:26898119-26898138 Msa0542290:three_prime_UTR 15.0%
!!! CAATTTTTTTTTGGTATTTT+TGG + chr4_1:26898128-26898147 Msa0542290:three_prime_UTR 15.0%
!!! TTTGGTTTTTTGTTTTTACA+AGG + chr4_1:26893851-26893870 Msa0542290:intron 20.0%
!! ATAACTAAATATCAAAGCAA+AGG - chr4_1:26894169-26894188 None:intergenic 20.0%
!! TTAGTTATTTGAGCTATATA+AGG + chr4_1:26894181-26894200 Msa0542290:intron 20.0%
!!! AGGATCTATTTTTATTGAAA+AGG + chr4_1:26894201-26894220 Msa0542290:intron 20.0%
!! AACATGATATTAATAAGACA+TGG + chr4_1:26894257-26894276 Msa0542290:intron 20.0%
!! TAAAAACTAAACCAAAACAA+AGG - chr4_1:26894311-26894330 None:intergenic 20.0%
!!! TTTATTTTACATTTGGCAAA+TGG + chr4_1:26894463-26894482 Msa0542290:intron 20.0%
!! GTTGTAAAGTAACTTATATT+TGG + chr4_1:26894609-26894628 Msa0542290:five_prime_UTR 20.0%
!! ATAACTTAAAAAAAGAGTCA+TGG - chr4_1:26895088-26895107 None:intergenic 20.0%
!!! CTCTTTTTTTAAGTTATATG+AGG + chr4_1:26895091-26895110 Msa0542290:intron 20.0%
!! CATCAGAGAATAAATAATAT+TGG - chr4_1:26895732-26895751 None:intergenic 20.0%
!! TTTCTAACTTAATTCCAATT+TGG + chr4_1:26895771-26895790 Msa0542290:intron 20.0%
!!! ATGGTAAGATTATTTTTTCA+TGG - chr4_1:26896137-26896156 None:intergenic 20.0%
!! ATGTTAATAGTAATGAATTG+TGG + chr4_1:26896203-26896222 Msa0542290:intron 20.0%
!! AGAACATTGGAAAAAAAATT+CGG + chr4_1:26896760-26896779 Msa0542290:intron 20.0%
!! AATTTGTAAATAACTTCTGT+AGG + chr4_1:26897344-26897363 Msa0542290:intron 20.0%
!!! AAGATTTTTTTTTGTTGAAG+TGG + chr4_1:26897990-26898009 Msa0542290:three_prime_UTR 20.0%
! GTAAGCAATGAAAATTTCAA+TGG + chr4_1:26893758-26893777 Msa0542290:intron 25.0%
!!! TCCTTTTTCTTCTTGTTTTT+TGG + chr4_1:26893833-26893852 Msa0542290:intron 25.0%
! ACCAAAAAACAAGAAGAAAA+AGG - chr4_1:26893837-26893856 None:intergenic 25.0%
! TATATTCTTTCTTCACATGT+TGG + chr4_1:26894409-26894428 Msa0542290:intron 25.0%
! ATATTCTTTCTTCACATGTT+GGG + chr4_1:26894410-26894429 Msa0542290:intron 25.0%
!! TTGGACTTAAAGAGAAATTT+TGG + chr4_1:26894628-26894647 Msa0542290:five_prime_UTR 25.0%
!!! TTCTGGAACTGAAAAAAAAA+TGG + chr4_1:26894764-26894783 Msa0542290:exon 25.0%
!! TCTGGAACTGAAAAAAAAAT+GGG + chr4_1:26894765-26894784 Msa0542290:exon 25.0%
! TATGTTCATGTTCACTTTAT+TGG + chr4_1:26895049-26895068 Msa0542290:intron 25.0%
!! CAAAATGAAAGCAATTTTAC+TGG - chr4_1:26895265-26895284 None:intergenic 25.0%
!! CAGTAAAATTGCTTTCATTT+TGG + chr4_1:26895263-26895282 Msa0542290:CDS 25.0%
! TCTTAATTTCTTAACTTACC+AGG + chr4_1:26895576-26895595 Msa0542290:intron 25.0%
! CTTAATTTCTTAACTTACCA+GGG + chr4_1:26895577-26895596 Msa0542290:intron 25.0%
! ATTGGAATTAAGTTAGAAAC+AGG - chr4_1:26895770-26895789 None:intergenic 25.0%
! TAACTTAATTCCAATTTGGT+TGG + chr4_1:26895775-26895794 Msa0542290:intron 25.0%
! AACTTAATTCCAATTTGGTT+GGG + chr4_1:26895776-26895795 Msa0542290:intron 25.0%
!!! TTTATTTTTCTGGTGTGAAT+CGG + chr4_1:26896089-26896108 Msa0542290:intron 25.0%
!!! GAAACAAGTTGATTTTCATA+GGG - chr4_1:26896452-26896471 None:intergenic 25.0%
!! CTATGAAAATCAACTTGTTT+CGG + chr4_1:26896451-26896470 Msa0542290:intron 25.0%
!! TATGAAAATCAACTTGTTTC+GGG + chr4_1:26896452-26896471 Msa0542290:intron 25.0%
!! GTATCTGATTTTTAATGAGT+AGG + chr4_1:26896529-26896548 Msa0542290:intron 25.0%
! AAATAACAACCAATCATAGA+AGG + chr4_1:26896552-26896571 Msa0542290:intron 25.0%
! AATAACAACCAATCATAGAA+GGG + chr4_1:26896553-26896572 Msa0542290:intron 25.0%
!!! TGTTTTAAGCATTAGCAAAT+AGG + chr4_1:26896630-26896649 Msa0542290:intron 25.0%
!!! ATCAGAATTTTCAAGTAACT+TGG + chr4_1:26896725-26896744 Msa0542290:intron 25.0%
! GATTAAATAGTACAGAACAT+TGG + chr4_1:26896747-26896766 Msa0542290:intron 25.0%
!!! TAATGCTTTTGGTTCTAATA+TGG + chr4_1:26896790-26896809 Msa0542290:intron 25.0%
! TCCATATTTCATATATTTGC+AGG - chr4_1:26896905-26896924 None:intergenic 25.0%
! AAATCATAGAAATTCCACTT+AGG - chr4_1:26897010-26897029 None:intergenic 25.0%
!!! CTTATTTTTGGATGGTAAAA+TGG + chr4_1:26897618-26897637 Msa0542290:CDS 25.0%
!! TGATTTGGGTAATTAGTTTA+CGG + chr4_1:26898079-26898098 Msa0542290:three_prime_UTR 25.0%
! ACATTTATGTCTTGATTTAG+TGG + chr4_1:26898162-26898181 Msa0542290:three_prime_UTR 25.0%
! TTATATATTTATGAGATCGG+AGG + chr4_1:26898291-26898310 Msa0542290:three_prime_UTR 25.0%
! TATATATTTATGAGATCGGA+GGG + chr4_1:26898292-26898311 Msa0542290:three_prime_UTR 25.0%
! TGCTCTAATCATATTATCTT+AGG - chr4_1:26898348-26898367 None:intergenic 25.0%
! AATATGATTAGAGCAAATCT+TGG + chr4_1:26898353-26898372 Msa0542290:three_prime_UTR 25.0%
! ATATGATTAGAGCAAATCTT+GGG + chr4_1:26898354-26898373 Msa0542290:three_prime_UTR 25.0%
!! TTATTGCTCTAGCTTTGTAA+AGG + chr4_1:26893736-26893755 Msa0542290:five_prime_UTR 30.0%
AAGAAGAAAAAGGAGAAAAG+AGG - chr4_1:26893827-26893846 None:intergenic 30.0%
!!! ACAAGGTTGTATTTTAGTGT+TGG + chr4_1:26893868-26893887 Msa0542290:intron 30.0%
!!! CAAGGTTGTATTTTAGTGTT+GGG + chr4_1:26893869-26893888 Msa0542290:intron 30.0%
!!! AAGGTTGTATTTTAGTGTTG+GGG + chr4_1:26893870-26893889 Msa0542290:intron 30.0%
GTTGGGGTTGTTTATAATTT+AGG + chr4_1:26893886-26893905 Msa0542290:intron 30.0%
!!! TTTTTTGTGTGTTTTTCCTC+CGG + chr4_1:26893969-26893988 Msa0542290:intron 30.0%
AATACTTCTTCAAAATCCGT+GGG - chr4_1:26894576-26894595 None:intergenic 30.0%
AAATACTTCTTCAAAATCCG+TGG - chr4_1:26894577-26894596 None:intergenic 30.0%
AGAATACACACATTATATGG+TGG - chr4_1:26894748-26894767 None:intergenic 30.0%
ACCATATAATGTGTGTATTC+TGG + chr4_1:26894747-26894766 Msa0542290:five_prime_UTR 30.0%
TCCAGAATACACACATTATA+TGG - chr4_1:26894751-26894770 None:intergenic 30.0%
AAACAAATTTCGAAGCAAGA+CGG - chr4_1:26894855-26894874 None:intergenic 30.0%
! TTTTCACTAATGGAAAGAGT+CGG + chr4_1:26894955-26894974 Msa0542290:CDS 30.0%
ACCACAAAATATCGTATCTT+CGG - chr4_1:26895182-26895201 None:intergenic 30.0%
! ATATTTTGTGGTGTCTTTGA+TGG + chr4_1:26895190-26895209 Msa0542290:CDS 30.0%
CTCTTGAATCGAAACAAAAT+AGG + chr4_1:26895290-26895309 Msa0542290:CDS 30.0%
AATCTCTTCATGGGATATAT+TGG + chr4_1:26895604-26895623 Msa0542290:CDS 30.0%
ATCTCTTCATGGGATATATT+GGG + chr4_1:26895605-26895624 Msa0542290:CDS 30.0%
ATGTTATTCTACTCAATGGT+TGG - chr4_1:26896283-26896302 None:intergenic 30.0%
GAACATGTTATTCTACTCAA+TGG - chr4_1:26896287-26896306 None:intergenic 30.0%
!!! CGAAACAAGTTGATTTTCAT+AGG - chr4_1:26896453-26896472 None:intergenic 30.0%
GCCTGCAAATATATGAAATA+TGG + chr4_1:26896901-26896920 Msa0542290:intron 30.0%
AATCAAAAACGTTAGACACA+AGG - chr4_1:26897144-26897163 None:intergenic 30.0%
!! TGTGTCTAACGTTTTTGATT+TGG + chr4_1:26897144-26897163 Msa0542290:intron 30.0%
!!! GTGTCTAACGTTTTTGATTT+GGG + chr4_1:26897145-26897164 Msa0542290:intron 30.0%
! GATTCTCTTGGTATTTTTCT+AGG + chr4_1:26897444-26897463 Msa0542290:intron 30.0%
! TCTTGGTATTTTTCTAGGTT+TGG + chr4_1:26897449-26897468 Msa0542290:intron 30.0%
! CTTGGTATTTTTCTAGGTTT+GGG + chr4_1:26897450-26897469 Msa0542290:intron 30.0%
AGAATCAGATTATGATGAAC+AGG + chr4_1:26897645-26897664 Msa0542290:CDS 30.0%
GAATCAGATTATGATGAACA+GGG + chr4_1:26897646-26897665 Msa0542290:CDS 30.0%
!!! TTTGGTATTTTTGGTTATGC+TGG + chr4_1:26898137-26898156 Msa0542290:three_prime_UTR 30.0%
! TCTTGATTTAGTGGTGTTTT+TGG + chr4_1:26898171-26898190 Msa0542290:three_prime_UTR 30.0%
! TGGTAATCTGAAATTCGGTT+AGG + chr4_1:26893993-26894012 Msa0542290:intron 35.0%
! TAATCTGAAATTCGGTTAGG+AGG + chr4_1:26893996-26894015 Msa0542290:intron 35.0%
!! TCTCTTTCATGCCTTTGTTT+TGG + chr4_1:26894297-26894316 Msa0542290:intron 35.0%
!! TGCTTCGAAATTTGTTTCTG+TGG + chr4_1:26894858-26894877 Msa0542290:CDS 35.0%
TGCTAGGTAAGGATGATAAT+TGG - chr4_1:26894932-26894951 None:intergenic 35.0%
AATTATCATCCTTACCTAGC+AGG + chr4_1:26894931-26894950 Msa0542290:CDS 35.0%
TTTCACTAATGGAAAGAGTC+GGG + chr4_1:26894956-26894975 Msa0542290:CDS 35.0%
TAAGTTATATGAGGGAGACT+TGG + chr4_1:26895100-26895119 Msa0542290:intron 35.0%
! TCCGAAGATACGATATTTTG+TGG + chr4_1:26895178-26895197 Msa0542290:CDS 35.0%
! CAGACAAAACTTGCTTCAAA+CGG + chr4_1:26895314-26895333 Msa0542290:CDS 35.0%
! CATAAAAGCATACAAGACCA+TGG + chr4_1:26895417-26895436 Msa0542290:CDS 35.0%
TCTCTTCATGGGATATATTG+GGG + chr4_1:26895606-26895625 Msa0542290:CDS 35.0%
! CTCTGATGAGTATATGCTTT+TGG + chr4_1:26895744-26895763 Msa0542290:intron 35.0%
ATTCCAATTTGGTTGGGAAT+AGG + chr4_1:26895782-26895801 Msa0542290:intron 35.0%
! CTATACCTGAATTTTCTCAC+CGG + chr4_1:26895960-26895979 Msa0542290:CDS 35.0%
TTCAATTTCACAGCTTGACA+TGG - chr4_1:26896156-26896175 None:intergenic 35.0%
GTAGGAAGGAAACTAATAAG+TGG + chr4_1:26896248-26896267 Msa0542290:intron 35.0%
AACATGTCCTGTTTGTCAAT+TGG + chr4_1:26896327-26896346 Msa0542290:intron 35.0%
! AATTGAGTTAGCTAGCTTCT+TGG + chr4_1:26896359-26896378 Msa0542290:intron 35.0%
GAATATATCCGTGGAATCTT+AGG + chr4_1:26896402-26896421 Msa0542290:intron 35.0%
TTTAGAAACATGCCTTTGCT+GGG + chr4_1:26896479-26896498 Msa0542290:intron 35.0%
! TCGGTACATGTTAATGCTTT+TGG + chr4_1:26896779-26896798 Msa0542290:intron 35.0%
TCTAATATGGACTCAGTGAA+AGG + chr4_1:26896803-26896822 Msa0542290:intron 35.0%
TTGCACTTGCATGTTGTAAA+AGG - chr4_1:26896928-26896947 None:intergenic 35.0%
TGTATCCTCAACAATTAGCA+TGG - chr4_1:26896976-26896995 None:intergenic 35.0%
ACAAATATGCATTGCCTAAG+TGG + chr4_1:26896993-26897012 Msa0542290:intron 35.0%
TTGTCATTGAGTGACATTGT+TGG + chr4_1:26897091-26897110 Msa0542290:intron 35.0%
TGTCATTGAGTGACATTGTT+GGG + chr4_1:26897092-26897111 Msa0542290:intron 35.0%
CGTAGAAACATAGTCAAATG+TGG + chr4_1:26897191-26897210 Msa0542290:intron 35.0%
! GTCAAATGTGGTGTTAATTG+TGG + chr4_1:26897203-26897222 Msa0542290:intron 35.0%
!!! CACGGACATGGTTTTAAAAA+GGG - chr4_1:26897280-26897299 None:intergenic 35.0%
!!! ACACGGACATGGTTTTAAAA+AGG - chr4_1:26897281-26897300 None:intergenic 35.0%
AGTGAATGTTGGAAGCTTTA+GGG - chr4_1:26897414-26897433 None:intergenic 35.0%
!! TTGGGATGTTTTAAGCAATG+AGG + chr4_1:26897468-26897487 Msa0542290:CDS 35.0%
!!! AGTCATCCATTTTTGAAGTC+GGG - chr4_1:26897585-26897604 None:intergenic 35.0%
!!! CAGTCATCCATTTTTGAAGT+CGG - chr4_1:26897586-26897605 None:intergenic 35.0%
!! TGCTGTAGTGTGCTTATTTT+TGG + chr4_1:26897606-26897625 Msa0542290:CDS 35.0%
!!! GTAGTGTGCTTATTTTTGGA+TGG + chr4_1:26897610-26897629 Msa0542290:CDS 35.0%
AATCCAGTTGAATCAGATGA+TGG + chr4_1:26897706-26897725 Msa0542290:CDS 35.0%
!! ATCAGATGATGGACAAAAGT+CGG + chr4_1:26897717-26897736 Msa0542290:CDS 35.0%
GTAAAGTTCCTTCTCAAAGA+TGG - chr4_1:26897745-26897764 None:intergenic 35.0%
AGATCAAAACTGGTTAGGTT+TGG + chr4_1:26897840-26897859 Msa0542290:CDS 35.0%
AAAACTGGTTAGGTTTGGAA+GGG + chr4_1:26897845-26897864 Msa0542290:CDS 35.0%
CTTCAGAAAATCTAGGAAGT+TGG - chr4_1:26897894-26897913 None:intergenic 35.0%
!! CTTCCTAGATTTTCTGAAGA+AGG + chr4_1:26897895-26897914 Msa0542290:CDS 35.0%
GATCCTTCTTCAGAAAATCT+AGG - chr4_1:26897901-26897920 None:intergenic 35.0%
GAAGCAAGAAATTCAAGAGT+TGG - chr4_1:26897923-26897942 None:intergenic 35.0%
CTTGAATTTCTTGCTTCATG+AGG + chr4_1:26897926-26897945 Msa0542290:exon 35.0%
TAACTGTTTATTGCAGTACC+TGG + chr4_1:26897949-26897968 Msa0542290:three_prime_UTR 35.0%
! AGGTTTTCTACTGGTGAATT+AGG - chr4_1:26898040-26898059 None:intergenic 35.0%
! AGTTTGTCTAGGTTTTCTAC+TGG - chr4_1:26898049-26898068 None:intergenic 35.0%
AAACTCGAAGTGGTTTGATT+TGG + chr4_1:26898064-26898083 Msa0542290:three_prime_UTR 35.0%
! AACTCGAAGTGGTTTGATTT+GGG + chr4_1:26898065-26898084 Msa0542290:three_prime_UTR 35.0%
AATTGAACATGTTAGATCCG+CGG - chr4_1:26898113-26898132 None:intergenic 35.0%
! AATGAAGTAATGCTTGCTGC+AGG - chr4_1:26893709-26893728 None:intergenic 40.0%
AATTTCAGATTACCAACCGG+AGG - chr4_1:26893988-26894007 None:intergenic 40.0%
CCGAATTTCAGATTACCAAC+CGG - chr4_1:26893991-26894010 None:intergenic 40.0%
!! CCGGTTGGTAATCTGAAATT+CGG + chr4_1:26893988-26894007 Msa0542290:intron 40.0%
TGAACAAGAATGTTCCACCT+AGG + chr4_1:26894030-26894049 Msa0542290:intron 40.0%
GAACAAGAATGTTCCACCTA+GGG + chr4_1:26894031-26894050 Msa0542290:intron 40.0%
TCGAACGATTTGTCCTTAAG+TGG + chr4_1:26894071-26894090 Msa0542290:intron 40.0%
ATCAAGTGATTGGACTCAAC+TGG - chr4_1:26894107-26894126 None:intergenic 40.0%
CTCGTCACTAATCAAGTGAT+TGG - chr4_1:26894117-26894136 None:intergenic 40.0%
AGCTGAACACAAGAAAACAG+TGG - chr4_1:26894527-26894546 None:intergenic 40.0%
! ACTGTTTTCTTGTGTTCAGC+TGG + chr4_1:26894526-26894545 Msa0542290:intron 40.0%
AGTGAAAATCCTGCTAGGTA+AGG - chr4_1:26894943-26894962 None:intergenic 40.0%
CCATTAGTGAAAATCCTGCT+AGG - chr4_1:26894948-26894967 None:intergenic 40.0%
! CCTAGCAGGATTTTCACTAA+TGG + chr4_1:26894945-26894964 Msa0542290:CDS 40.0%
TTCACTAATGGAAAGAGTCG+GGG + chr4_1:26894957-26894976 Msa0542290:CDS 40.0%
TTCGTGCATATTTACACAGC+AGG + chr4_1:26894980-26894999 Msa0542290:CDS 40.0%
TCGTGCATATTTACACAGCA+GGG + chr4_1:26894981-26895000 Msa0542290:CDS 40.0%
TGTGGAGTTCAGTTTATCCT+CGG - chr4_1:26895383-26895402 None:intergenic 40.0%
AGGATAAACTGAACTCCACA+TGG + chr4_1:26895383-26895402 Msa0542290:CDS 40.0%
TATGAAAGCTTCTCTCCATG+TGG - chr4_1:26895401-26895420 None:intergenic 40.0%
CTACAGAAGCAGTCTAGATT+TGG - chr4_1:26895463-26895482 None:intergenic 40.0%
AATCTAGACTGCTTCTGTAG+TGG + chr4_1:26895463-26895482 Msa0542290:CDS 40.0%
ATCTGTGACTGTAGTAAAGC+AGG + chr4_1:26895492-26895511 Msa0542290:CDS 40.0%
CAGGGTTCAAATCTCTTCAT+GGG + chr4_1:26895595-26895614 Msa0542290:intron 40.0%
TATTGGCATAATGACCCACT+TGG - chr4_1:26895715-26895734 None:intergenic 40.0%
TCTCCTATTCCCAACCAAAT+TGG - chr4_1:26895788-26895807 None:intergenic 40.0%
GAAAGAATCAAGCAGTGCAA+GGG + chr4_1:26895812-26895831 Msa0542290:CDS 40.0%
GTTTGGAGATTTCTGCTTGA+AGG + chr4_1:26895922-26895941 Msa0542290:CDS 40.0%
GATTTCTGCTTGAAGGAGTA+TGG + chr4_1:26895929-26895948 Msa0542290:CDS 40.0%
TTCATTGTTCTTGCGTCAGA+TGG + chr4_1:26896004-26896023 Msa0542290:CDS 40.0%
TCATTGTTCTTGCGTCAGAT+GGG + chr4_1:26896005-26896024 Msa0542290:CDS 40.0%
CCAGCATATGGTTAATGCTA+AGG - chr4_1:26896229-26896248 None:intergenic 40.0%
CCTTAGCATTAACCATATGC+TGG + chr4_1:26896226-26896245 Msa0542290:intron 40.0%
AGCATTAACCATATGCTGGT+AGG + chr4_1:26896230-26896249 Msa0542290:intron 40.0%
TTAACCATATGCTGGTAGGA+AGG + chr4_1:26896234-26896253 Msa0542290:intron 40.0%
CGGATATATTCAAGCACAAC+AGG - chr4_1:26896393-26896412 None:intergenic 40.0%
GTTGTGCTTGAATATATCCG+TGG + chr4_1:26896393-26896412 Msa0542290:intron 40.0%
TCCTAACTCCTAAGATTCCA+CGG - chr4_1:26896413-26896432 None:intergenic 40.0%
! CTTTAGAAACATGCCTTTGC+TGG + chr4_1:26896478-26896497 Msa0542290:intron 40.0%
CTGATATTTCAACACAACGC+TGG + chr4_1:26896507-26896526 Msa0542290:intron 40.0%
TGCGTAACACTCTCAAGTTT+AGG + chr4_1:26896688-26896707 Msa0542290:intron 40.0%
CAAGTTTAGGTCTGTGTGAA+AGG + chr4_1:26896701-26896720 Msa0542290:intron 40.0%
! GCATTAGACTTTTCAACGCT+AGG + chr4_1:26896825-26896844 Msa0542290:intron 40.0%
TCAACAATTAGCATGGCAAG+AGG - chr4_1:26896969-26896988 None:intergenic 40.0%
TCTTGCCATGCTAATTGTTG+AGG + chr4_1:26896968-26896987 Msa0542290:intron 40.0%
GTCATTGAGTGACATTGTTG+GGG + chr4_1:26897093-26897112 Msa0542290:intron 40.0%
TTAAAAAGGGACAGAGACTG+TGG - chr4_1:26897267-26897286 None:intergenic 40.0%
! GTGAATGTTGGAAGCTTTAG+GGG - chr4_1:26897413-26897432 None:intergenic 40.0%
CAGTGAATGTTGGAAGCTTT+AGG - chr4_1:26897415-26897434 None:intergenic 40.0%
AAGCTTCCAACATTCACTGA+TGG + chr4_1:26897416-26897435 Msa0542290:intron 40.0%
CAGTTACCATCAGTGAATGT+TGG - chr4_1:26897425-26897444 None:intergenic 40.0%
! CTGATGGTAACTGATTCTCT+TGG + chr4_1:26897432-26897451 Msa0542290:intron 40.0%
!! GGATGTTTTAAGCAATGAGG+AGG + chr4_1:26897471-26897490 Msa0542290:CDS 40.0%
!! TGTTTTAAGCAATGAGGAGG+TGG + chr4_1:26897474-26897493 Msa0542290:CDS 40.0%
GGTGGTTGAGATAGTATCAT+CGG + chr4_1:26897492-26897511 Msa0542290:CDS 40.0%
TTCTGGTAAATTCAGCTGCT+CGG + chr4_1:26897542-26897561 Msa0542290:CDS 40.0%
CAAGTACCCGACTTCAAAAA+TGG + chr4_1:26897576-26897595 Msa0542290:CDS 40.0%
ATTCAACTGGATTCCCAGAA+TGG - chr4_1:26897699-26897718 None:intergenic 40.0%
TGTCCATCATCTGATTCAAC+TGG - chr4_1:26897712-26897731 None:intergenic 40.0%
TGTTGAAGATGAAGCAGCAT+CGG + chr4_1:26897813-26897832 Msa0542290:CDS 40.0%
GGTGAAGATCAAAACTGGTT+AGG + chr4_1:26897835-26897854 Msa0542290:CDS 40.0%
CAAAACTGGTTAGGTTTGGA+AGG + chr4_1:26897844-26897863 Msa0542290:CDS 40.0%
AAACTGGTTAGGTTTGGAAG+GGG + chr4_1:26897846-26897865 Msa0542290:CDS 40.0%
TCTTGAATCGAGTGTTTACC+AGG - chr4_1:26897970-26897989 None:intergenic 40.0%
!! GGTAACATTTTGATGCTCCT+TGG + chr4_1:26898011-26898030 Msa0542290:three_prime_UTR 40.0%
AAACCTAGACAAACTCGAAG+TGG + chr4_1:26898054-26898073 Msa0542290:three_prime_UTR 40.0%
! AAACCACTTCGAGTTTGTCT+AGG - chr4_1:26898060-26898079 None:intergenic 40.0%
ATTGAACATGTTAGATCCGC+GGG - chr4_1:26898112-26898131 None:intergenic 40.0%
!! TTTTGTCCTTACAGAGTGTC+TGG - chr4_1:26898269-26898288 None:intergenic 40.0%
! TTGTGTGTTTTTCCTCCGGT+TGG + chr4_1:26893973-26893992 Msa0542290:intron 45.0%
TGGTTACTGAGCTCCACTTA+AGG - chr4_1:26894087-26894106 None:intergenic 45.0%
TAGTGACGAGTGTTATCTCG+TGG + chr4_1:26894127-26894146 Msa0542290:intron 45.0%
! GTTATCTCGTGGCTTGCAAT+TGG + chr4_1:26894138-26894157 Msa0542290:intron 45.0%
ACGTGAGATCTGTACTGGAA+AGG + chr4_1:26894705-26894724 Msa0542290:five_prime_UTR 45.0%
CGTGAGATCTGTACTGGAAA+GGG + chr4_1:26894706-26894725 Msa0542290:five_prime_UTR 45.0%
! AGTCGAAGTACTTGTAGCAG+CGG + chr4_1:26894807-26894826 Msa0542290:CDS 45.0%
TCTGTGGACAAAAGAGAGCA+AGG + chr4_1:26894874-26894893 Msa0542290:CDS 45.0%
GGGAATTAATCAGGATGCCA+TGG + chr4_1:26895010-26895029 Msa0542290:CDS 45.0%
ACTTACTTCCCACACAACCA+TGG - chr4_1:26895030-26895049 None:intergenic 45.0%
! TGTGGTGTCTTTGATGGTCA+TGG + chr4_1:26895196-26895215 Msa0542290:CDS 45.0%
! TTTGATGGTCATGGTCCACA+AGG + chr4_1:26895205-26895224 Msa0542290:CDS 45.0%
ATCTTGTTGCGCGTAAAGTG+AGG + chr4_1:26895230-26895249 Msa0542290:CDS 45.0%
TCTTGTTGCGCGTAAAGTGA+GGG + chr4_1:26895231-26895250 Msa0542290:CDS 45.0%
AGACCATGGACAAAGAGCTT+AGG + chr4_1:26895431-26895450 Msa0542290:CDS 45.0%
AGACCTAAGCTCTTTGTCCA+TGG - chr4_1:26895437-26895456 None:intergenic 45.0%
CCATGAAGAGATTTGAACCC+TGG - chr4_1:26895597-26895616 None:intergenic 45.0%
CCAGGGTTCAAATCTCTTCA+TGG + chr4_1:26895594-26895613 Msa0542290:intron 45.0%
CATGGAGTCATTGCTGTCTT+TGG - chr4_1:26895653-26895672 None:intergenic 45.0%
CAAAGACAGCAATGACTCCA+TGG + chr4_1:26895651-26895670 Msa0542290:CDS 45.0%
AGTCAACTGAATTGCCACCA+TGG - chr4_1:26895671-26895690 None:intergenic 45.0%
! TTGAAGCCTGATTTGCCAAG+TGG + chr4_1:26895697-26895716 Msa0542290:intron 45.0%
! TGAAGCCTGATTTGCCAAGT+GGG + chr4_1:26895698-26895717 Msa0542290:intron 45.0%
AATGACCCACTTGGCAAATC+AGG - chr4_1:26895706-26895725 None:intergenic 45.0%
TTGGTTGGGAATAGGAGAAG+CGG + chr4_1:26895790-26895809 Msa0542290:intron 45.0%
GGAAAGAATCAAGCAGTGCA+AGG + chr4_1:26895811-26895830 Msa0542290:CDS 45.0%
AATCAAGCAGTGCAAGGGTA+GGG + chr4_1:26895817-26895836 Msa0542290:CDS 45.0%
AAGATGAGCCTGAAGTTCCT+AGG + chr4_1:26895852-26895871 Msa0542290:CDS 45.0%
AGATGAGCCTGAAGTTCCTA+GGG + chr4_1:26895853-26895872 Msa0542290:CDS 45.0%
CATTGTTCTTGCGTCAGATG+GGG + chr4_1:26896006-26896025 Msa0542290:CDS 45.0%
GTTTCCTTCCTACCAGCATA+TGG - chr4_1:26896241-26896260 None:intergenic 45.0%
CACACTGCCAATTGACAAAC+AGG - chr4_1:26896337-26896356 None:intergenic 45.0%
TCCGTGGAATCTTAGGAGTT+AGG + chr4_1:26896409-26896428 Msa0542290:intron 45.0%
AAACATGCCTTTGCTGGGTT+TGG + chr4_1:26896484-26896503 Msa0542290:intron 45.0%
ATATCAGCCAAACCCAGCAA+AGG - chr4_1:26896494-26896513 None:intergenic 45.0%
AAGCGCATCCCTTCTATGAT+TGG - chr4_1:26896564-26896583 None:intergenic 45.0%
GCAGGCTAGTAAAACTGTCA+CGG - chr4_1:26896887-26896906 None:intergenic 45.0%
GTACCATGCTATCGTTGATG+TGG - chr4_1:26897041-26897060 None:intergenic 45.0%
ATCATCAGCAGCAAGGATTC+TGG + chr4_1:26897525-26897544 Msa0542290:CDS 45.0%
TCTGGTAAATTCAGCTGCTC+GGG + chr4_1:26897543-26897562 Msa0542290:CDS 45.0%
TAAATTCAGCTGCTCGGGAA+TGG + chr4_1:26897548-26897567 Msa0542290:CDS 45.0%
TCAGAAGAAAACGAGCCCAA+CGG + chr4_1:26897775-26897794 Msa0542290:CDS 45.0%
GTTGAAGATGAAGCAGCATC+GGG + chr4_1:26897814-26897833 Msa0542290:CDS 45.0%
CATCGGGTGAAGATCAAAAC+TGG + chr4_1:26897830-26897849 Msa0542290:CDS 45.0%
ACTGGTGAATTAGGCTACCA+AGG - chr4_1:26898031-26898050 None:intergenic 45.0%
AGTTTACGGTTTCAAACCCG+CGG + chr4_1:26898093-26898112 Msa0542290:three_prime_UTR 45.0%
!!! TTTTATTTTTATTTTACATT+TGG + chr4_1:26894456-26894475 Msa0542290:intron 5.0%
AGAACTCGAGTTCGATCCCT+AGG - chr4_1:26894050-26894069 None:intergenic 50.0%
TCCGTTCAAATAGCGTCCCA+CGG + chr4_1:26894557-26894576 Msa0542290:five_prime_UTR 50.0%
TCCGTGGGACGCTATTTGAA+CGG - chr4_1:26894561-26894580 None:intergenic 50.0%
TGCGAACGTGAGATCTGTAC+TGG + chr4_1:26894700-26894719 Msa0542290:five_prime_UTR 50.0%
! GTCGAAGTACTTGTAGCAGC+GGG + chr4_1:26894808-26894827 Msa0542290:CDS 50.0%
ATTTACACAGCAGGGTCGCA+AGG + chr4_1:26894989-26895008 Msa0542290:CDS 50.0%
TTTACACAGCAGGGTCGCAA+GGG + chr4_1:26894990-26895009 Msa0542290:CDS 50.0%
GGGTCGCAAGGGAATTAATC+AGG + chr4_1:26895001-26895020 Msa0542290:CDS 50.0%
ATCAGGATGCCATGGTTGTG+TGG + chr4_1:26895018-26895037 Msa0542290:CDS 50.0%
TCAGGATGCCATGGTTGTGT+GGG + chr4_1:26895019-26895038 Msa0542290:CDS 50.0%
CGGAACATAACACCAGACTG+TGG + chr4_1:26895334-26895353 Msa0542290:CDS 50.0%
TTCTCAGACTCACCACAGTC+TGG - chr4_1:26895349-26895368 None:intergenic 50.0%
AGACTGTGGTGAGTCTGAGA+AGG + chr4_1:26895348-26895367 Msa0542290:CDS 50.0%
TGAGAAGGATTGTTCTGCCG+AGG + chr4_1:26895363-26895382 Msa0542290:CDS 50.0%
TGGGGATTCTCGAGCAATCA+TGG + chr4_1:26895624-26895643 Msa0542290:CDS 50.0%
GGGGATTCTCGAGCAATCAT+GGG + chr4_1:26895625-26895644 Msa0542290:CDS 50.0%
AGACAGCAATGACTCCATGG+TGG + chr4_1:26895654-26895673 Msa0542290:CDS 50.0%
GAATCAAGCAGTGCAAGGGT+AGG + chr4_1:26895816-26895835 Msa0542290:CDS 50.0%
!!! TGCCTTTTGATGACGCACCA+GGG + chr4_1:26895882-26895901 Msa0542290:CDS 50.0%
AACCCTGGTGCGTCATCAAA+AGG - chr4_1:26895887-26895906 None:intergenic 50.0%
! ACCAGGGTTAGCAATGGCTA+GGG + chr4_1:26895898-26895917 Msa0542290:CDS 50.0%
! TTAGCAATGGCTAGGGCGTT+TGG + chr4_1:26895905-26895924 Msa0542290:CDS 50.0%
AGCAGCCGGTGAGAAAATTC+AGG - chr4_1:26895968-26895987 None:intergenic 50.0%
TGCTATCGTTGATGTGGCAG+AGG - chr4_1:26897035-26897054 None:intergenic 50.0%
CTGCCACATCAACGATAGCA+TGG + chr4_1:26897035-26897054 Msa0542290:intron 50.0%
TGGTCAGGGTAGCTACATTG+AGG - chr4_1:26897247-26897266 None:intergenic 50.0%
AGTAGAGACAGACACGGACA+TGG - chr4_1:26897292-26897311 None:intergenic 50.0%
TCCTGCAGTAGAGACAGACA+CGG - chr4_1:26897298-26897317 None:intergenic 50.0%
CTTGCTGCTGATGATCGTGT+TGG - chr4_1:26897520-26897539 None:intergenic 50.0%
CAACACGATCATCAGCAGCA+AGG + chr4_1:26897518-26897537 Msa0542290:CDS 50.0%
ACCATCCAGAGCAACCATTC+TGG + chr4_1:26897682-26897701 Msa0542290:CDS 50.0%
CCATCCAGAGCAACCATTCT+GGG + chr4_1:26897683-26897702 Msa0542290:CDS 50.0%
GATTCCCAGAATGGTTGCTC+TGG - chr4_1:26897690-26897709 None:intergenic 50.0%
! AGTCGGAGCCATCTTTGAGA+AGG + chr4_1:26897734-26897753 Msa0542290:CDS 50.0%
TGTGCTCCAGACACTCTGTA+AGG + chr4_1:26898260-26898279 Msa0542290:three_prime_UTR 50.0%
TGAGATCGGAGGGAGTAATG+TGG + chr4_1:26898302-26898321 Msa0542290:three_prime_UTR 50.0%
ACTCGAGTTCGATCCCTAGG+TGG - chr4_1:26894047-26894066 None:intergenic 55.0%
ACTTGTAGCAGCGGGAGCAA+TGG + chr4_1:26894816-26894835 Msa0542290:CDS 55.0%
CGCGCAACAAGATGACCTTG+TGG - chr4_1:26895223-26895242 None:intergenic 55.0%
AGCCTGAAGTTCCTAGGGTG+TGG + chr4_1:26895858-26895877 Msa0542290:CDS 55.0%
AGCCACACCCTAGGAACTTC+AGG - chr4_1:26895863-26895882 None:intergenic 55.0%
TCAAAAGGCAGCCACACCCT+AGG - chr4_1:26895872-26895891 None:intergenic 55.0%
!!! CTGCCTTTTGATGACGCACC+AGG + chr4_1:26895881-26895900 Msa0542290:CDS 55.0%
! TGACGCACCAGGGTTAGCAA+TGG + chr4_1:26895892-26895911 Msa0542290:CDS 55.0%
! CACCAGGGTTAGCAATGGCT+AGG + chr4_1:26895897-26895916 Msa0542290:CDS 55.0%
GATCTCTGTCTGTGAGCAGC+CGG - chr4_1:26895982-26896001 None:intergenic 55.0%
AGGGACAGAGACTGTGGTCA+GGG - chr4_1:26897261-26897280 None:intergenic 55.0%
AAGGGACAGAGACTGTGGTC+AGG - chr4_1:26897262-26897281 None:intergenic 55.0%
TCCGTGTCTGTCTCTACTGC+AGG + chr4_1:26897294-26897313 Msa0542290:intron 55.0%
! CCCAGAATGGTTGCTCTGGA+TGG - chr4_1:26897686-26897705 None:intergenic 55.0%
TCGACAGACACTGCTCCGTT+GGG - chr4_1:26897793-26897812 None:intergenic 55.0%
ATCGACAGACACTGCTCCGT+TGG - chr4_1:26897794-26897813 None:intergenic 55.0%
GGAGTAATGTGGCAGCGACT+GGG + chr4_1:26898313-26898332 Msa0542290:three_prime_UTR 55.0%
CAGCGGGAGCAATGGAGAGA+TGG + chr4_1:26894824-26894843 Msa0542290:CDS 60.0%
GCCCTAGCCATTGCTAACCC+TGG - chr4_1:26895902-26895921 None:intergenic 60.0%
GGGAGTAATGTGGCAGCGAC+TGG + chr4_1:26898312-26898331 Msa0542290:three_prime_UTR 60.0%
GTGGCAGCGACTGGGTGCAT+TGG + chr4_1:26898321-26898340 Msa0542290:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 26893706 26898379 26893706 ID=Msa0542290;Name=Msa0542290
chr4_1 mRNA 26893706 26898379 26893706 ID=Msa0542290-mRNA-1;Parent=Msa0542290;Name=Msa0542290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=290|1|1|1|0.8|0.66|6|449|470
chr4_1 exon 26893706 26893757 26893706 ID=Msa0542290-mRNA-1:exon:7286;Parent=Msa0542290-mRNA-1
chr4_1 exon 26894545 26895043 26894545 ID=Msa0542290-mRNA-1:exon:7287;Parent=Msa0542290-mRNA-1
chr4_1 exon 26895169 26895513 26895169 ID=Msa0542290-mRNA-1:exon:7288;Parent=Msa0542290-mRNA-1
chr4_1 exon 26895598 26895715 26895598 ID=Msa0542290-mRNA-1:exon:7289;Parent=Msa0542290-mRNA-1
chr4_1 exon 26895804 26896027 26895804 ID=Msa0542290-mRNA-1:exon:7290;Parent=Msa0542290-mRNA-1
chr4_1 exon 26897466 26898379 26897466 ID=Msa0542290-mRNA-1:exon:7291;Parent=Msa0542290-mRNA-1
chr4_1 five_prime_UTR 26893706 26893757 26893706 ID=Msa0542290-mRNA-1:five_prime_utr;Parent=Msa0542290-mRNA-1
chr4_1 five_prime_UTR 26894545 26894782 26894545 ID=Msa0542290-mRNA-1:five_prime_utr;Parent=Msa0542290-mRNA-1
chr4_1 CDS 26894783 26895043 26894783 ID=Msa0542290-mRNA-1:cds;Parent=Msa0542290-mRNA-1
chr4_1 CDS 26895169 26895513 26895169 ID=Msa0542290-mRNA-1:cds;Parent=Msa0542290-mRNA-1
chr4_1 CDS 26895598 26895715 26895598 ID=Msa0542290-mRNA-1:cds;Parent=Msa0542290-mRNA-1
chr4_1 CDS 26895804 26896027 26895804 ID=Msa0542290-mRNA-1:cds;Parent=Msa0542290-mRNA-1
chr4_1 CDS 26897466 26897930 26897466 ID=Msa0542290-mRNA-1:cds;Parent=Msa0542290-mRNA-1
chr4_1 three_prime_UTR 26897931 26898379 26897931 ID=Msa0542290-mRNA-1:three_prime_utr;Parent=Msa0542290-mRNA-1
Gene Sequence

>Msa0542290

ATGGGTTGTTGTGTCTCAACGAGCAGTCGAAGTACTTGTAGCAGCGGGAGCAATGGAGAGATGGTAACTCCGTCTTGCTTCGAAATTTGTTTCTGTGGACAAAAGAGAGCAAGGAGAACATTTTCTGATCATGCTATTTCTCTACACCAATTATCATCCTTACCTAGCAGGATTTTCACTAATGGAAAGAGTCGGGGTTCGTGCATATTTACACAGCAGGGTCGCAAGGGAATTAATCAGGATGCCATGGTTGTGTGGGAAGATTTCATGTCCGAAGATACGATATTTTGTGGTGTCTTTGATGGTCATGGTCCACAAGGTCATCTTGTTGCGCGTAAAGTGAGGGATACATTGCCAGTAAAATTGCTTTCATTTTGGCATTCTCTTGAATCGAAACAAAATAGGTCAGACAAAACTTGCTTCAAACGGAACATAACACCAGACTGTGGTGAGTCTGAGAAGGATTGTTCTGCCGAGGATAAACTGAACTCCACATGGAGAGAAGCTTTCATAAAAGCATACAAGACCATGGACAAAGAGCTTAGGTCTTATCCAAATCTAGACTGCTTCTGTAGTGGAAGCACATCTGTGACTGTAGTAAAGCAGGGTTCAAATCTCTTCATGGGATATATTGGGGATTCTCGAGCAATCATGGGATCCAAAGACAGCAATGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGAGAAGCGGAAAGAATCAAGCAGTGCAAGGGTAGGGTTTTTGCTTTGCAAGATGAGCCTGAAGTTCCTAGGGTGTGGCTGCCTTTTGATGACGCACCAGGGTTAGCAATGGCTAGGGCGTTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTCACAGACAGAGATCAATTCATTGTTCTTGCGTCAGATGGGGTTTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAGATAGTATCATCGGCACCAACACGATCATCAGCAGCAAGGATTCTGGTAAATTCAGCTGCTCGGGAATGGAAACTCAAGTACCCGACTTCAAAAATGGATGACTGTGCTGTAGTGTGCTTATTTTTGGATGGTAAAATGGACTCAGAATCAGATTATGATGAACAGGGCTTCTCTTCTGCAACCATCCAGAGCAACCATTCTGGGAATCCAGTTGAATCAGATGATGGACAAAAGTCGGAGCCATCTTTGAGAAGGAACTTTACTGTGAGATCATCAGAAGAAAACGAGCCCAACGGAGCAGTGTCTGTCGATGTTGAAGATGAAGCAGCATCGGGTGAAGATCAAAACTGGTTAGGTTTGGAAGGGGTCACTCGTGTAAACTCACTTGTCCAACTTCCTAGATTTTCTGAAGAAGGATCCAACTCTTGA
Protein sequence

>Msa0542290

MGCCVSTSSRSTCSSGSNGEMVTPSCFEICFCGQKRARRTFSDHAISLHQLSSLPSRIFTNGKSRGSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPQGHLVARKVRDTLPVKLLSFWHSLESKQNRSDKTCFKRNITPDCGESEKDCSAEDKLNSTWREAFIKAYKTMDKELRSYPNLDCFCSGSTSVTVVKQGSNLFMGYIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKQCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVNSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPVESDDGQKSEPSLRRNFTVRSSEENEPNGAVSVDVEDEAASGEDQNWLGLEGVTRVNSLVQLPRFSEEGSNS*