Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183430 | sp|Q3E6Y3|Y1869_ARATH | 59.655 | 290 | 104 | 6 | 62 | 350 | 43 | 320 | 9.05e-110 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183430 | A0A072TL60 | 95.455 | 352 | 14 | 1 | 1 | 350 | 1 | 352 | 0.0 | 658 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423100 | Msa1183430 | 0.834824 | 2.396746e-56 | -8.615850e-47 |
| Msa0469260 | Msa1183430 | 0.804543 | 2.054145e-49 | -8.615850e-47 |
| Msa0999340 | Msa1183430 | 0.830595 | 2.687753e-55 | -8.615850e-47 |
| Msa0999350 | Msa1183430 | 0.827096 | 1.889128e-54 | -8.615850e-47 |
| Msa0999390 | Msa1183430 | 0.826075 | 3.309612e-54 | -8.615850e-47 |
| Msa0999400 | Msa1183430 | 0.822308 | 2.539263e-53 | -8.615850e-47 |
| Msa1183430 | Msa1228190 | 0.812035 | 5.191888e-51 | -8.615850e-47 |
| Msa1183430 | Msa1435480 | 0.821657 | 3.594006e-53 | -8.615850e-47 |
| Msa1183430 | Msa1458910 | 0.816306 | 5.918854e-52 | -8.615850e-47 |
| Msa0520510 | Msa1183430 | 0.806320 | 8.709181e-50 | -8.615850e-47 |
| Msa0965310 | Msa1183430 | 0.803854 | 2.857714e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183430 | MtrunA17_Chr1g0168191 | 87.429 | 350 | 44 | 0 | 1 | 350 | 1 | 350 | 0.0 | 636 |
| Msa1183430 | MtrunA17_Chr8g0335991 | 86.325 | 351 | 48 | 0 | 1 | 351 | 1 | 351 | 0.0 | 634 |
| Msa1183430 | MtrunA17_Chr8g0336011 | 96.237 | 186 | 7 | 0 | 1 | 186 | 1 | 186 | 5.56e-130 | 370 |
| Msa1183430 | MtrunA17_Chr8g0336001 | 94.578 | 166 | 7 | 1 | 187 | 350 | 3 | 168 | 2.07e-100 | 293 |
| Msa1183430 | MtrunA17_Chr8g0336021 | 77.500 | 160 | 36 | 0 | 191 | 350 | 1 | 160 | 2.56e-91 | 270 |
| Msa1183430 | MtrunA17_Chr8g0336031 | 73.016 | 189 | 42 | 2 | 1 | 186 | 1 | 183 | 3.60e-89 | 266 |
| Msa1183430 | MtrunA17_Chr6g0481291 | 37.249 | 349 | 199 | 7 | 5 | 350 | 34 | 365 | 2.02e-70 | 224 |
| Msa1183430 | MtrunA17_Chr1g0210841 | 36.335 | 322 | 186 | 7 | 30 | 346 | 40 | 347 | 3.41e-68 | 218 |
| Msa1183430 | MtrunA17_Chr1g0162921 | 38.462 | 299 | 171 | 5 | 50 | 346 | 89 | 376 | 1.52e-67 | 217 |
| Msa1183430 | MtrunA17_Chr7g0225571 | 28.571 | 280 | 185 | 7 | 76 | 351 | 3 | 271 | 2.66e-34 | 127 |
| Msa1183430 | MtrunA17_Chr7g0225581 | 28.929 | 280 | 180 | 8 | 76 | 347 | 3 | 271 | 2.96e-34 | 127 |
| Msa1183430 | MtrunA17_Chr4g0052721 | 27.711 | 166 | 103 | 3 | 63 | 228 | 80 | 228 | 3.18e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1183430 | AT1G28710.1 | 57.018 | 342 | 128 | 6 | 10 | 350 | 8 | 331 | 1.31e-126 | 367 |
| Msa1183430 | AT1G28710.4 | 57.018 | 342 | 128 | 6 | 10 | 350 | 8 | 331 | 1.31e-126 | 367 |
| Msa1183430 | AT1G28710.3 | 57.018 | 342 | 128 | 6 | 10 | 350 | 8 | 331 | 1.31e-126 | 367 |
| Msa1183430 | AT1G28700.1 | 56.913 | 311 | 122 | 5 | 40 | 350 | 31 | 329 | 4.30e-116 | 340 |
| Msa1183430 | AT1G28695.1 | 59.655 | 290 | 104 | 6 | 62 | 350 | 43 | 320 | 9.20e-111 | 326 |
| Msa1183430 | AT4G19975.1 | 36.283 | 339 | 198 | 5 | 8 | 346 | 33 | 353 | 3.12e-78 | 244 |
| Msa1183430 | AT2G02061.2 | 41.429 | 280 | 153 | 4 | 70 | 346 | 113 | 384 | 7.18e-76 | 239 |
| Msa1183430 | AT2G02061.1 | 41.429 | 280 | 153 | 4 | 70 | 346 | 113 | 384 | 9.44e-76 | 239 |
| Msa1183430 | AT5G44820.1 | 38.869 | 283 | 164 | 3 | 66 | 348 | 93 | 366 | 5.98e-74 | 233 |
| Msa1183430 | AT1G14590.1 | 40.702 | 285 | 158 | 4 | 64 | 346 | 85 | 360 | 7.30e-71 | 226 |
| Msa1183430 | AT4G15970.1 | 39.863 | 291 | 152 | 7 | 64 | 350 | 33 | 304 | 2.96e-67 | 216 |
| Msa1183430 | AT4G19970.1 | 36.000 | 300 | 179 | 6 | 49 | 346 | 87 | 375 | 1.27e-60 | 199 |
| Msa1183430 | AT5G40900.1 | 32.971 | 276 | 157 | 10 | 58 | 325 | 53 | 308 | 6.27e-33 | 125 |
| Msa1183430 | AT1G70630.7 | 28.384 | 229 | 130 | 8 | 75 | 287 | 408 | 618 | 5.98e-13 | 70.5 |
| Msa1183430 | AT1G70630.2 | 28.384 | 229 | 130 | 8 | 75 | 287 | 271 | 481 | 5.98e-13 | 70.1 |
| Msa1183430 | AT1G70630.1 | 28.384 | 229 | 130 | 8 | 75 | 287 | 271 | 481 | 5.98e-13 | 70.1 |
| Msa1183430 | AT1G70630.5 | 28.384 | 229 | 130 | 8 | 75 | 287 | 240 | 450 | 6.73e-13 | 70.1 |
| Msa1183430 | AT1G70630.3 | 28.384 | 229 | 130 | 8 | 75 | 287 | 487 | 697 | 7.40e-13 | 70.1 |
| Msa1183430 | AT1G70630.6 | 28.384 | 229 | 130 | 8 | 75 | 287 | 477 | 687 | 7.56e-13 | 70.1 |
| Msa1183430 | AT1G70630.4 | 28.384 | 229 | 130 | 8 | 75 | 287 | 456 | 666 | 7.95e-13 | 70.1 |
Find 66 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATATCTTTGTTTGAAATA+TGG | 0.193499 | 8_1:-18655965 | Msa1183430:CDS |
| CTCATTGGAGGTGGTATAAT+TGG | 0.223087 | 8_1:-18655888 | Msa1183430:CDS |
| TGCAAAGGTGGCTGATTTAA+AGG | 0.246451 | 8_1:-18655748 | Msa1183430:CDS |
| CATTGTGAGATAGAAGTAAT+TGG | 0.252261 | 8_1:+18657943 | None:intergenic |
| ATGGTAGCATTACTCTTTAT+TGG | 0.260034 | 8_1:-18658008 | Msa1183430:CDS |
| GTCAAGATAGTAAAGACTTT+AGG | 0.262307 | 8_1:-18655812 | Msa1183430:CDS |
| TCCATATGATTCATTAATAT+TGG | 0.262897 | 8_1:+18657663 | None:intergenic |
| AGGACTCAAGGTTAGGTTCT+TGG | 0.281679 | 8_1:-18655859 | Msa1183430:CDS |
| GAGGTTGAATTGCTATAAAT+TGG | 0.282310 | 8_1:-18657413 | Msa1183430:CDS |
| GGTGGTATAATTGGACATTT+AGG | 0.286363 | 8_1:-18655879 | Msa1183430:CDS |
| GATAATTGCCATGGTAAATA+AGG | 0.305710 | 8_1:-18657587 | Msa1183430:CDS |
| TTTCCGACCAAGGATCATTA+AGG | 0.315589 | 8_1:+18656036 | None:intergenic |
| TCAAGATAGTAAAGACTTTA+GGG | 0.320318 | 8_1:-18655811 | Msa1183430:CDS |
| AATTAATGATGGATAATCTT+AGG | 0.326571 | 8_1:-18658052 | None:intergenic |
| CCAGTGGTGTTTGAAGTCTT+GGG | 0.346614 | 8_1:-18655652 | Msa1183430:CDS |
| ACCAGTGGTGTTTGAAGTCT+TGG | 0.360499 | 8_1:-18655653 | Msa1183430:CDS |
| GAAGCAATTTAAGAGGTTAG+AGG | 0.397873 | 8_1:-18655709 | Msa1183430:CDS |
| ACTCTACGGTAAATATCAAT+TGG | 0.400902 | 8_1:-18655683 | Msa1183430:CDS |
| AGCTATGCTTCGACAACAAT+TGG | 0.407284 | 8_1:+18655770 | None:intergenic |
| TAAAGGCAGTCCTTCATGAT+TGG | 0.422701 | 8_1:-18655731 | Msa1183430:CDS |
| GAGAAGGACTTCTTTCCTCT+TGG | 0.427603 | 8_1:-18657323 | Msa1183430:CDS |
| TATGTAGAACAAGATGTAAA+TGG | 0.428771 | 8_1:-18657562 | Msa1183430:CDS |
| CCATATTTCAAACAAAGATA+TGG | 0.434987 | 8_1:+18655965 | None:intergenic |
| ACCAATATTAATGAATCATA+TGG | 0.436903 | 8_1:-18657664 | Msa1183430:CDS |
| ATTGTGAGATAGAAGTAATT+GGG | 0.437484 | 8_1:+18657944 | None:intergenic |
| GATGTGCTTCTTGACCTCAT+TGG | 0.442802 | 8_1:-18655903 | Msa1183430:CDS |
| ATGATTGGAAGCAATTTAAG+AGG | 0.446327 | 8_1:-18655716 | Msa1183430:CDS |
| TATTGTAGCCGTTGATCAAA+CGG | 0.450990 | 8_1:-18657458 | Msa1183430:CDS |
| GACATTTAGGACTCAAGGTT+AGG | 0.457948 | 8_1:-18655866 | Msa1183430:CDS |
| CTCTTGGAAGTTCTAAAACA+TGG | 0.466210 | 8_1:-18657307 | Msa1183430:CDS |
| TCTTTGTTTGAAATATGGTA+TGG | 0.468420 | 8_1:-18655960 | Msa1183430:CDS |
| ATGAGTCTGTGCTGATTTGA+AGG | 0.473661 | 8_1:+18656060 | None:intergenic |
| GTGCTTCTTGACCTCATTGG+AGG | 0.490648 | 8_1:-18655900 | Msa1183430:CDS |
| ACTCATACCTTAATGATCCT+TGG | 0.513651 | 8_1:-18656043 | Msa1183430:CDS |
| TAAATTGCTTCCAATCATGA+AGG | 0.518810 | 8_1:+18655721 | None:intergenic |
| AATTGGACATTTAGGACTCA+AGG | 0.520528 | 8_1:-18655871 | Msa1183430:CDS |
| CTTCTTGACCTCATTGGAGG+TGG | 0.525602 | 8_1:-18655897 | Msa1183430:CDS |
| GTACCATGTTTGATTGCTGC+TGG | 0.531544 | 8_1:+18657910 | None:intergenic |
| TTTGATTGCTGCTGGCATAG+TGG | 0.546575 | 8_1:+18657918 | None:intergenic |
| ATGAGAAAGACCAATGGTAA+AGG | 0.551053 | 8_1:+18657976 | None:intergenic |
| ATAGTAGGCCGTTTGATCAA+CGG | 0.551724 | 8_1:+18657450 | None:intergenic |
| GATAATCTTAGGCAAACCCT+TGG | 0.557674 | 8_1:-18658041 | Msa1183430:CDS |
| TTGTCGAAGCATAGCTGCAA+AGG | 0.568091 | 8_1:-18655763 | Msa1183430:CDS |
| CTACCATTGCAAAACTCCCA+AGG | 0.568897 | 8_1:+18658024 | None:intergenic |
| TACATAAGCCTTATTTACCA+TGG | 0.572638 | 8_1:+18657579 | None:intergenic |
| CAGTGGTGTTTGAAGTCTTG+GGG | 0.572852 | 8_1:-18655651 | Msa1183430:CDS |
| GGAATGAAAGATAATTCCAC+AGG | 0.575650 | 8_1:-18655939 | Msa1183430:CDS |
| TTTGGCTTGGAGAAGGAACA+AGG | 0.577708 | 8_1:-18657501 | Msa1183430:CDS |
| TGCTATAAATTGGAGACAGA+TGG | 0.578366 | 8_1:-18657403 | Msa1183430:CDS |
| GAGGTTAGAGGCTAACTCTA+CGG | 0.579399 | 8_1:-18655697 | Msa1183430:CDS |
| TCATCAATATGATGTGGAGA+AGG | 0.580410 | 8_1:-18657339 | Msa1183430:CDS |
| ATAATCTTAGGCAAACCCTT+GGG | 0.586033 | 8_1:-18658040 | Msa1183430:CDS |
| CCCAAGACTTCAAACACCAC+TGG | 0.591667 | 8_1:+18655652 | None:intergenic |
| AAATAGATCAAACATAGTGA+TGG | 0.599605 | 8_1:+18657534 | None:intergenic |
| AAGATTTCATCAATATGATG+TGG | 0.602128 | 8_1:-18657345 | Msa1183430:CDS |
| TACCATTGCAAAACTCCCAA+GGG | 0.611196 | 8_1:+18658025 | None:intergenic |
| ATACCTTAATGATCCTTGGT+CGG | 0.611497 | 8_1:-18656039 | Msa1183430:CDS |
| TCGAAGCATAGCTGCAAAGG+TGG | 0.612378 | 8_1:-18655760 | Msa1183430:CDS |
| CAAAACGGTGATAATTGCCA+TGG | 0.618708 | 8_1:-18657596 | Msa1183430:CDS |
| CAATTATACCACCTCCAATG+AGG | 0.629333 | 8_1:+18655889 | None:intergenic |
| ACAACAATTGGCATGAACAG+TGG | 0.638445 | 8_1:+18655782 | None:intergenic |
| GTGAGATAGAAGTAATTGGG+TGG | 0.657198 | 8_1:+18657947 | None:intergenic |
| AGAAAGATGAGAAAGACCAA+TGG | 0.661689 | 8_1:+18657970 | None:intergenic |
| ATGCCAGCAGCAATCAAACA+TGG | 0.665548 | 8_1:-18657913 | Msa1183430:intron |
| TGCAGGACACTGATGTAATG+TGG | 0.707215 | 8_1:-18656127 | Msa1183430:intron |
| TCAATTGGACAAGTCACCAG+TGG | 0.711490 | 8_1:-18655668 | Msa1183430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAGTATTTATAATTTA+CGG | + | chr8_1:18656597-18656616 | None:intergenic | 10.0% |
| !! | ATTCAAAATAATCAAAATAT+TGG | - | chr8_1:18657024-18657043 | Msa1183430:intron | 10.0% |
| !! | TTCAAAATAATCAAAATATT+GGG | - | chr8_1:18657025-18657044 | Msa1183430:intron | 10.0% |
| !! | ATTCAATATTTAAAGATATA+AGG | - | chr8_1:18657278-18657297 | Msa1183430:intron | 10.0% |
| !! | TAAGAAAAGAAAAGTAATAT+TGG | + | chr8_1:18655820-18655839 | None:intergenic | 15.0% |
| !!! | AACAAAATTTTAACATGAAA+GGG | + | chr8_1:18657113-18657132 | None:intergenic | 15.0% |
| !! | GAATTAGAAATATTAGAAAA+TGG | + | chr8_1:18657525-18657544 | None:intergenic | 15.0% |
| !! | TGAAACAATTAAATTCTTAC+AGG | + | chr8_1:18655945-18655964 | None:intergenic | 20.0% |
| !! | ACCAATATTAATGAATCATA+TGG | - | chr8_1:18656030-18656049 | Msa1183430:CDS | 20.0% |
| !! | TCCATATGATTCATTAATAT+TGG | + | chr8_1:18656034-18656053 | None:intergenic | 20.0% |
| !! | TTCAATCAGAAAAAACAAAA+CGG | - | chr8_1:18656083-18656102 | Msa1183430:CDS | 20.0% |
| !!! | ATCTATTTTTAAGCAGTTTT+TGG | - | chr8_1:18656175-18656194 | Msa1183430:intron | 20.0% |
| !!! | CATAAACAACTTTTTTACTA+TGG | + | chr8_1:18656635-18656654 | None:intergenic | 20.0% |
| !!! | TTTGATTATTTTGAATCACT+AGG | + | chr8_1:18657020-18657039 | None:intergenic | 20.0% |
| !! | CTAAAAATTTAACATGAAAG+GGG | + | chr8_1:18657075-18657094 | None:intergenic | 20.0% |
| !! | GCTAAAAATTTAACATGAAA+GGG | + | chr8_1:18657076-18657095 | None:intergenic | 20.0% |
| !! | TGCTAAAAATTTAACATGAA+AGG | + | chr8_1:18657077-18657096 | None:intergenic | 20.0% |
| !!! | ACAAAATTTTAACATGAAAG+GGG | + | chr8_1:18657112-18657131 | None:intergenic | 20.0% |
| !!! | CAACAAAATTTTAACATGAA+AGG | + | chr8_1:18657114-18657133 | None:intergenic | 20.0% |
| !!! | TCATTACAATATTTCTACTT+TGG | + | chr8_1:18657164-18657183 | None:intergenic | 20.0% |
| !! | AATGAAATTGAACTTAGTTT+AGG | - | chr8_1:18657179-18657198 | Msa1183430:intron | 20.0% |
| !! | AGTATTAACTTTCCAAATTT+GGG | + | chr8_1:18657398-18657417 | None:intergenic | 20.0% |
| !! | AAGTATTAACTTTCCAAATT+TGG | + | chr8_1:18657399-18657418 | None:intergenic | 20.0% |
| !!! | TAATAAATTTTGCTATTCCT+AGG | - | chr8_1:18657441-18657460 | Msa1183430:CDS | 20.0% |
| !!! | TTTTTGCTCAACTTTTTAAA+TGG | + | chr8_1:18657602-18657621 | None:intergenic | 20.0% |
| !!! | GTTTTATTTTCCTTTACCAT+TGG | - | chr8_1:18655708-18655727 | Msa1183430:CDS | 25.0% |
| ! | ATTGTGAGATAGAAGTAATT+GGG | + | chr8_1:18655753-18655772 | None:intergenic | 25.0% |
| !! | TAATTGTTTCATTTTCTCCA+TGG | - | chr8_1:18655954-18655973 | Msa1183430:CDS | 25.0% |
| ! | TATGTAGAACAAGATGTAAA+TGG | - | chr8_1:18656132-18656151 | Msa1183430:intron | 25.0% |
| ! | AAATAGATCAAACATAGTGA+TGG | + | chr8_1:18656163-18656182 | None:intergenic | 25.0% |
| ! | AAGATTTCATCAATATGATG+TGG | - | chr8_1:18656349-18656368 | Msa1183430:intron | 25.0% |
| ! | AAGTTTCTTTAGTGTGAATT+TGG | - | chr8_1:18656431-18656450 | Msa1183430:intron | 25.0% |
| ! | AAATTTATCATCCGAACAAT+AGG | + | chr8_1:18656519-18656538 | None:intergenic | 25.0% |
| ! | TCTAAATCTAAATTTGTGAG+TGG | - | chr8_1:18656949-18656968 | Msa1183430:intron | 25.0% |
| ! | CTAAATCTAAATTTGTGAGT+GGG | - | chr8_1:18656950-18656969 | Msa1183430:intron | 25.0% |
| ! | TAAATCTAAATTTGTGAGTG+GGG | - | chr8_1:18656951-18656970 | Msa1183430:intron | 25.0% |
| ! | CTATTCCTAGGAAAAAAAAT+AGG | - | chr8_1:18657453-18657472 | Msa1183430:CDS | 25.0% |
| !!! | ACTTTCCTATTTTTTTTCCT+AGG | + | chr8_1:18657461-18657480 | None:intergenic | 25.0% |
| ! | AAAAATAGGAAAGTCAATTG+TGG | - | chr8_1:18657467-18657486 | Msa1183430:CDS | 25.0% |
| ! | GAAAAACATCAAATCAATAC+TGG | - | chr8_1:18657677-18657696 | Msa1183430:intron | 25.0% |
| ! | CCATATTTCAAACAAAGATA+TGG | + | chr8_1:18657732-18657751 | None:intergenic | 25.0% |
| !! | CCATATCTTTGTTTGAAATA+TGG | - | chr8_1:18657729-18657748 | Msa1183430:intron | 25.0% |
| !! | TCTTTGTTTGAAATATGGTA+TGG | - | chr8_1:18657734-18657753 | Msa1183430:intron | 25.0% |
| ! | TCAAGATAGTAAAGACTTTA+GGG | - | chr8_1:18657883-18657902 | Msa1183430:intron | 25.0% |
| ATGGTAGCATTACTCTTTAT+TGG | - | chr8_1:18655686-18655705 | Msa1183430:CDS | 30.0% | |
| CATTGTGAGATAGAAGTAAT+TGG | + | chr8_1:18655754-18655773 | None:intergenic | 30.0% | |
| TCTTGCAAATGAAGTTCAAT+TGG | - | chr8_1:18655913-18655932 | Msa1183430:CDS | 30.0% | |
| TGAAAATTTCAATCAAGCCA+TGG | + | chr8_1:18655974-18655993 | None:intergenic | 30.0% | |
| !!! | GTTTTTTCTGATTGAAGCTT+TGG | + | chr8_1:18656079-18656098 | None:intergenic | 30.0% |
| GATAATTGCCATGGTAAATA+AGG | - | chr8_1:18656107-18656126 | Msa1183430:CDS | 30.0% | |
| !! | TACATAAGCCTTATTTACCA+TGG | + | chr8_1:18656118-18656137 | None:intergenic | 30.0% |
| !!! | TTTTTAAGCAGTTTTTGGCT+TGG | - | chr8_1:18656180-18656199 | Msa1183430:intron | 30.0% |
| CAAAAATTGACATCGATAGT+AGG | + | chr8_1:18656262-18656281 | None:intergenic | 30.0% | |
| ! | ACTATCGATGTCAATTTTTG+AGG | - | chr8_1:18656262-18656281 | Msa1183430:intron | 30.0% |
| GAGGTTGAATTGCTATAAAT+TGG | - | chr8_1:18656281-18656300 | Msa1183430:intron | 30.0% | |
| !! | TGGCTACAACTTCATTTTTA+CGG | - | chr8_1:18656407-18656426 | Msa1183430:intron | 30.0% |
| ! | TCGCTTTAAATCCTATTGTT+CGG | - | chr8_1:18656505-18656524 | Msa1183430:intron | 30.0% |
| GTCTGTGTGTATTAATCTAT+CGG | - | chr8_1:18656667-18656686 | Msa1183430:intron | 30.0% | |
| !! | TCGGTTGAAAGTATTTATCT+TGG | - | chr8_1:18656686-18656705 | Msa1183430:intron | 30.0% |
| !! | GTTGAAAGTATTTATCTTGG+TGG | - | chr8_1:18656689-18656708 | Msa1183430:intron | 30.0% |
| ATCACTCTTCAATTCAACTA+TGG | + | chr8_1:18656898-18656917 | None:intergenic | 30.0% | |
| AAGAGTGATCCTTAATCTAA+TGG | - | chr8_1:18656909-18656928 | Msa1183430:intron | 30.0% | |
| AGAGTGATCCTTAATCTAAT+GGG | - | chr8_1:18656910-18656929 | Msa1183430:intron | 30.0% | |
| GATCAATTTCTCCAAATACA+AGG | - | chr8_1:18657245-18657264 | Msa1183430:intron | 30.0% | |
| !! | GAGAAGTTTTTAAGAGAGTT+AGG | - | chr8_1:18657372-18657391 | Msa1183430:CDS | 30.0% |
| ! | ATACTGGATTTTACTTTGCA+AGG | - | chr8_1:18657693-18657712 | Msa1183430:intron | 30.0% |
| AGATAATTCCACAGGAAAAA+AGG | - | chr8_1:18657763-18657782 | Msa1183430:intron | 30.0% | |
| !! | TTGGATACTCTCTATTTTAG+TGG | - | chr8_1:18657854-18657873 | Msa1183430:intron | 30.0% |
| GTCAAGATAGTAAAGACTTT+AGG | - | chr8_1:18657882-18657901 | Msa1183430:intron | 30.0% | |
| TAAATTGCTTCCAATCATGA+AGG | + | chr8_1:18657976-18657995 | None:intergenic | 30.0% | |
| ATGATTGGAAGCAATTTAAG+AGG | - | chr8_1:18657978-18657997 | Msa1183430:CDS | 30.0% | |
| ACTCTACGGTAAATATCAAT+TGG | - | chr8_1:18658011-18658030 | Msa1183430:CDS | 30.0% | |
| ATAATCTTAGGCAAACCCTT+GGG | - | chr8_1:18655654-18655673 | Msa1183430:CDS | 35.0% | |
| ATGAGAAAGACCAATGGTAA+AGG | + | chr8_1:18655721-18655740 | None:intergenic | 35.0% | |
| AGAAAGATGAGAAAGACCAA+TGG | + | chr8_1:18655727-18655746 | None:intergenic | 35.0% | |
| TATTGTAGCCGTTGATCAAA+CGG | - | chr8_1:18656236-18656255 | Msa1183430:intron | 35.0% | |
| TGCTATAAATTGGAGACAGA+TGG | - | chr8_1:18656291-18656310 | Msa1183430:intron | 35.0% | |
| !!! | ACAGATGGTGTTGATTTTGA+AGG | - | chr8_1:18656306-18656325 | Msa1183430:intron | 35.0% |
| TCATCAATATGATGTGGAGA+AGG | - | chr8_1:18656355-18656374 | Msa1183430:intron | 35.0% | |
| !!! | CATGTTTTAGAACTTCCAAG+AGG | + | chr8_1:18656389-18656408 | None:intergenic | 35.0% |
| !! | CTCTTGGAAGTTCTAAAACA+TGG | - | chr8_1:18656387-18656406 | Msa1183430:intron | 35.0% |
| !! | TTTGGATGAGACAGTTTTGT+TGG | - | chr8_1:18656449-18656468 | Msa1183430:intron | 35.0% |
| !!! | TTGGATGAGACAGTTTTGTT+GGG | - | chr8_1:18656450-18656469 | Msa1183430:intron | 35.0% |
| ATTGTTAGATTGATCAGCTG+AGG | - | chr8_1:18656731-18656750 | Msa1183430:intron | 35.0% | |
| TTGATCGTACACCTTGTATT+TGG | + | chr8_1:18657259-18657278 | None:intergenic | 35.0% | |
| TGAGTTCAGTGTTTGCATTT+AGG | - | chr8_1:18657342-18657361 | Msa1183430:CDS | 35.0% | |
| ACTCATACCTTAATGATCCT+TGG | - | chr8_1:18657651-18657670 | Msa1183430:CDS | 35.0% | |
| ATACCTTAATGATCCTTGGT+CGG | - | chr8_1:18657655-18657674 | Msa1183430:CDS | 35.0% | |
| ! | ATTTGATGTTTTTCCGACCA+AGG | + | chr8_1:18657671-18657690 | None:intergenic | 35.0% |
| GGAATGAAAGATAATTCCAC+AGG | - | chr8_1:18657755-18657774 | Msa1183430:intron | 35.0% | |
| GGTGGTATAATTGGACATTT+AGG | - | chr8_1:18657815-18657834 | Msa1183430:intron | 35.0% | |
| ! | AATTGGACATTTAGGACTCA+AGG | - | chr8_1:18657823-18657842 | Msa1183430:intron | 35.0% |
| GAAGCAATTTAAGAGGTTAG+AGG | - | chr8_1:18657985-18658004 | Msa1183430:CDS | 35.0% | |
| GATAATCTTAGGCAAACCCT+TGG | - | chr8_1:18655653-18655672 | Msa1183430:CDS | 40.0% | |
| TACCATTGCAAAACTCCCAA+GGG | + | chr8_1:18655672-18655691 | None:intergenic | 40.0% | |
| GTGAGATAGAAGTAATTGGG+TGG | + | chr8_1:18655750-18655769 | None:intergenic | 40.0% | |
| CAAAACGGTGATAATTGCCA+TGG | - | chr8_1:18656098-18656117 | Msa1183430:CDS | 40.0% | |
| ATAGTAGGCCGTTTGATCAA+CGG | + | chr8_1:18656247-18656266 | None:intergenic | 40.0% | |
| TAGATTGATCAGCTGAGGTA+AGG | - | chr8_1:18656736-18656755 | Msa1183430:intron | 40.0% | |
| ! | GATCCTTAATCTAATGGGTG+TGG | - | chr8_1:18656915-18656934 | Msa1183430:intron | 40.0% |
| ! | ACATTTTGCAACAGCTGCAA+AGG | + | chr8_1:18657305-18657324 | None:intergenic | 40.0% |
| AGCTGTTGCAAAATGTTGCT+TGG | - | chr8_1:18657309-18657328 | Msa1183430:CDS | 40.0% | |
| ! | GCTGTTGCAAAATGTTGCTT+GGG | - | chr8_1:18657310-18657329 | Msa1183430:CDS | 40.0% |
| ! | TGCAAAATGTTGCTTGGGTA+AGG | - | chr8_1:18657315-18657334 | Msa1183430:CDS | 40.0% |
| ! | AAAATGTTGCTTGGGTAAGG+TGG | - | chr8_1:18657318-18657337 | Msa1183430:CDS | 40.0% |
| AAGAGAGTTAGGCCCAAATT+TGG | - | chr8_1:18657383-18657402 | Msa1183430:CDS | 40.0% | |
| CTGCATGCAAATTGAATGTG+TGG | + | chr8_1:18657552-18657571 | None:intergenic | 40.0% | |
| CACACATTCAATTTGCATGC+AGG | - | chr8_1:18657550-18657569 | Msa1183430:CDS | 40.0% | |
| !! | ATGAGTCTGTGCTGATTTGA+AGG | + | chr8_1:18657637-18657656 | None:intergenic | 40.0% |
| TTTCCGACCAAGGATCATTA+AGG | + | chr8_1:18657661-18657680 | None:intergenic | 40.0% | |
| !!! | ATCTTGCTCCTTTTTTCCTG+TGG | + | chr8_1:18657774-18657793 | None:intergenic | 40.0% |
| CAATTATACCACCTCCAATG+AGG | + | chr8_1:18657808-18657827 | None:intergenic | 40.0% | |
| CTCATTGGAGGTGGTATAAT+TGG | - | chr8_1:18657806-18657825 | Msa1183430:intron | 40.0% | |
| ! | GACATTTAGGACTCAAGGTT+AGG | - | chr8_1:18657828-18657847 | Msa1183430:intron | 40.0% |
| ACAACAATTGGCATGAACAG+TGG | + | chr8_1:18657915-18657934 | None:intergenic | 40.0% | |
| AGCTATGCTTCGACAACAAT+TGG | + | chr8_1:18657927-18657946 | None:intergenic | 40.0% | |
| ! | TGCAAAGGTGGCTGATTTAA+AGG | - | chr8_1:18657946-18657965 | Msa1183430:CDS | 40.0% |
| TAAAGGCAGTCCTTCATGAT+TGG | - | chr8_1:18657963-18657982 | Msa1183430:CDS | 40.0% | |
| ! | AACCCTTGGGAGTTTTGCAA+TGG | - | chr8_1:18655667-18655686 | Msa1183430:CDS | 45.0% |
| CTACCATTGCAAAACTCCCA+AGG | + | chr8_1:18655673-18655692 | None:intergenic | 45.0% | |
| TTTGATTGCTGCTGGCATAG+TGG | + | chr8_1:18655779-18655798 | None:intergenic | 45.0% | |
| ATGCCAGCAGCAATCAAACA+TGG | - | chr8_1:18655781-18655800 | Msa1183430:CDS | 45.0% | |
| GTACCATGTTTGATTGCTGC+TGG | + | chr8_1:18655787-18655806 | None:intergenic | 45.0% | |
| !!! | AGCAGTTTTTGGCTTGGAGA+AGG | - | chr8_1:18656186-18656205 | Msa1183430:intron | 45.0% |
| !! | TTTGGCTTGGAGAAGGAACA+AGG | - | chr8_1:18656193-18656212 | Msa1183430:intron | 45.0% |
| GAGAAGGACTTCTTTCCTCT+TGG | - | chr8_1:18656371-18656390 | Msa1183430:intron | 45.0% | |
| AGGTAAGGCTAGAGATGCAT+AGG | - | chr8_1:18656751-18656770 | Msa1183430:intron | 45.0% | |
| GAGCCACACCCATTAGATTA+AGG | + | chr8_1:18656921-18656940 | None:intergenic | 45.0% | |
| TGCAGGACACTGATGTAATG+TGG | - | chr8_1:18657567-18657586 | Msa1183430:CDS | 45.0% | |
| GATGTGCTTCTTGACCTCAT+TGG | - | chr8_1:18657791-18657810 | Msa1183430:intron | 45.0% | |
| AGGACTCAAGGTTAGGTTCT+TGG | - | chr8_1:18657835-18657854 | Msa1183430:intron | 45.0% | |
| TTGTCGAAGCATAGCTGCAA+AGG | - | chr8_1:18657931-18657950 | Msa1183430:CDS | 45.0% | |
| GAGGTTAGAGGCTAACTCTA+CGG | - | chr8_1:18657997-18658016 | Msa1183430:CDS | 45.0% | |
| TCAATTGGACAAGTCACCAG+TGG | - | chr8_1:18658026-18658045 | Msa1183430:CDS | 45.0% | |
| ! | ACCAGTGGTGTTTGAAGTCT+TGG | - | chr8_1:18658041-18658060 | Msa1183430:CDS | 45.0% |
| ! | CCAGTGGTGTTTGAAGTCTT+GGG | - | chr8_1:18658042-18658061 | Msa1183430:CDS | 45.0% |
| ! | CAGTGGTGTTTGAAGTCTTG+GGG | - | chr8_1:18658043-18658062 | Msa1183430:CDS | 45.0% |
| GTGCTTCTTGACCTCATTGG+AGG | - | chr8_1:18657794-18657813 | Msa1183430:intron | 50.0% | |
| CTTCTTGACCTCATTGGAGG+TGG | - | chr8_1:18657797-18657816 | Msa1183430:intron | 50.0% | |
| TCGAAGCATAGCTGCAAAGG+TGG | - | chr8_1:18657934-18657953 | Msa1183430:CDS | 50.0% | |
| CCCAAGACTTCAAACACCAC+TGG | + | chr8_1:18658045-18658064 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18655647 | 18658069 | 18655647 | ID=Msa1183430;Name=Msa1183430 |
| chr8_1 | mRNA | 18655647 | 18658069 | 18655647 | ID=Msa1183430-mRNA-1;Parent=Msa1183430;Name=Msa1183430-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|351 |
| chr8_1 | exon | 18657914 | 18658069 | 18657914 | ID=Msa1183430-mRNA-1:exon:7151;Parent=Msa1183430-mRNA-1 |
| chr8_1 | exon | 18657288 | 18657689 | 18657288 | ID=Msa1183430-mRNA-1:exon:7150;Parent=Msa1183430-mRNA-1 |
| chr8_1 | exon | 18655647 | 18656144 | 18655647 | ID=Msa1183430-mRNA-1:exon:7149;Parent=Msa1183430-mRNA-1 |
| chr8_1 | CDS | 18657914 | 18658069 | 18657914 | ID=Msa1183430-mRNA-1:cds;Parent=Msa1183430-mRNA-1 |
| chr8_1 | CDS | 18657288 | 18657689 | 18657288 | ID=Msa1183430-mRNA-1:cds;Parent=Msa1183430-mRNA-1 |
| chr8_1 | CDS | 18655647 | 18656144 | 18655647 | ID=Msa1183430-mRNA-1:cds;Parent=Msa1183430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
