Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965310 | sp|Q9LV40|ROGF8_ARATH | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965310 | F6LPV1 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0965310 | 0.811709 | 6.113819e-51 | -8.615850e-47 |
| Msa0015710 | Msa0965310 | 0.801014 | 1.099656e-48 | -8.615850e-47 |
| Msa0055450 | Msa0965310 | 0.802423 | 5.649004e-49 | -8.615850e-47 |
| Msa0104500 | Msa0965310 | 0.808714 | 2.703719e-50 | -8.615850e-47 |
| Msa0669840 | Msa0965310 | 0.842542 | 2.427282e-58 | -8.615850e-47 |
| Msa0725860 | Msa0965310 | 0.817954 | 2.522484e-52 | -8.615850e-47 |
| Msa0739480 | Msa0965310 | 0.816441 | 5.520062e-52 | -8.615850e-47 |
| Msa0739580 | Msa0965310 | 0.800908 | 1.155675e-48 | -8.615850e-47 |
| Msa0742180 | Msa0965310 | 0.814440 | 1.539120e-51 | -8.615850e-47 |
| Msa0782240 | Msa0965310 | 0.803316 | 3.695720e-49 | -8.615850e-47 |
| Msa0786040 | Msa0965310 | 0.834587 | 2.749096e-56 | -8.615850e-47 |
| Msa0823400 | Msa0965310 | 0.822950 | 1.800141e-53 | -8.615850e-47 |
| Msa0124130 | Msa0965310 | 0.838790 | 2.332527e-57 | -8.615850e-47 |
| Msa0149140 | Msa0965310 | 0.818391 | 2.008272e-52 | -8.615850e-47 |
| Msa0152480 | Msa0965310 | 0.803606 | 3.216551e-49 | -8.615850e-47 |
| Msa0152500 | Msa0965310 | 0.811555 | 6.603950e-51 | -8.615850e-47 |
| Msa0153420 | Msa0965310 | 0.807848 | 4.135613e-50 | -8.615850e-47 |
| Msa0156250 | Msa0965310 | 0.809078 | 2.260618e-50 | -8.615850e-47 |
| Msa0194380 | Msa0965310 | 0.826709 | 2.337668e-54 | -8.615850e-47 |
| Msa0206800 | Msa0965310 | 0.826418 | 2.742169e-54 | -8.615850e-47 |
| Msa0212150 | Msa0965310 | 0.819147 | 1.353192e-52 | -8.615850e-47 |
| Msa0373960 | Msa0965310 | 0.877082 | 8.354863e-69 | -8.615850e-47 |
| Msa0406000 | Msa0965310 | 0.847819 | 9.082331e-60 | -8.615850e-47 |
| Msa0423100 | Msa0965310 | 0.869296 | 3.443547e-66 | -8.615850e-47 |
| Msa0424330 | Msa0965310 | 0.811134 | 8.150837e-51 | -8.615850e-47 |
| Msa0424340 | Msa0965310 | 0.835513 | 1.606453e-56 | -8.615850e-47 |
| Msa0441590 | Msa0965310 | 0.815672 | 8.198588e-52 | -8.615850e-47 |
| Msa0451400 | Msa0965310 | 0.844918 | 5.613376e-59 | -8.615850e-47 |
| Msa0469260 | Msa0965310 | 0.836465 | 9.209965e-57 | -8.615850e-47 |
| Msa0242540 | Msa0965310 | 0.813245 | 2.821355e-51 | -8.615850e-47 |
| Msa0252630 | Msa0965310 | 0.803102 | 4.091939e-49 | -8.615850e-47 |
| Msa0252770 | Msa0965310 | 0.830165 | 3.423995e-55 | -8.615850e-47 |
| Msa0280750 | Msa0965310 | 0.816607 | 5.067308e-52 | -8.615850e-47 |
| Msa0288200 | Msa0965310 | 0.815013 | 1.148708e-51 | -8.615850e-47 |
| Msa0289920 | Msa0965310 | 0.802341 | 5.874856e-49 | -8.615850e-47 |
| Msa0291330 | Msa0965310 | 0.813305 | 2.737093e-51 | -8.615850e-47 |
| Msa0306120 | Msa0965310 | 0.815528 | 8.829921e-52 | -8.615850e-47 |
| Msa0314630 | Msa0965310 | 0.800081 | 1.703664e-48 | -8.615850e-47 |
| Msa0322830 | Msa0965310 | 0.823816 | 1.129651e-53 | -8.615850e-47 |
| Msa0322840 | Msa0965310 | 0.825584 | 4.329453e-54 | -8.615850e-47 |
| Msa0322860 | Msa0965310 | 0.828467 | 8.847976e-55 | -8.615850e-47 |
| Msa0329460 | Msa0965310 | 0.812471 | 4.170132e-51 | -8.615850e-47 |
| Msa0329620 | Msa0965310 | 0.839314 | 1.705996e-57 | -8.615850e-47 |
| Msa0351770 | Msa0965310 | 0.823897 | 1.081627e-53 | -8.615850e-47 |
| Msa0359250 | Msa0965310 | 0.832607 | 8.585554e-56 | -8.615850e-47 |
| Msa0492190 | Msa0965310 | 0.833265 | 5.888852e-56 | -8.615850e-47 |
| Msa0515950 | Msa0965310 | 0.808875 | 2.498412e-50 | -8.615850e-47 |
| Msa0520510 | Msa0965310 | 0.803907 | 2.785864e-49 | -8.615850e-47 |
| Msa0534930 | Msa0965310 | 0.833558 | 4.978485e-56 | -8.615850e-47 |
| Msa0535040 | Msa0965310 | 0.813352 | 2.673636e-51 | -8.615850e-47 |
| Msa0546830 | Msa0965310 | 0.845331 | 4.341304e-59 | -8.615850e-47 |
| Msa0575740 | Msa0965310 | 0.817049 | 4.033470e-52 | -8.615850e-47 |
| Msa0591790 | Msa0965310 | 0.835798 | 1.360453e-56 | -8.615850e-47 |
| Msa0591800 | Msa0965310 | 0.863138 | 3.083707e-64 | -8.615850e-47 |
| Msa0860170 | Msa0965310 | 0.842163 | 3.057220e-58 | -8.615850e-47 |
| Msa0860280 | Msa0965310 | 0.816218 | 6.192976e-52 | -8.615850e-47 |
| Msa0862310 | Msa0965310 | 0.824340 | 8.510257e-54 | -8.615850e-47 |
| Msa0876560 | Msa0965310 | 0.809689 | 1.671080e-50 | -8.615850e-47 |
| Msa0899950 | Msa0965310 | 0.951624 | 1.379666e-109 | -8.615850e-47 |
| Msa0911540 | Msa0965310 | 0.801529 | 8.626476e-49 | -8.615850e-47 |
| Msa0927120 | Msa0965310 | 0.899864 | 1.299086e-77 | -8.615850e-47 |
| Msa0929870 | Msa0965310 | 0.820601 | 6.292997e-53 | -8.615850e-47 |
| Msa0941820 | Msa0965310 | 0.843226 | 1.595896e-58 | -8.615850e-47 |
| Msa0946210 | Msa0965310 | 0.800364 | 1.492025e-48 | -8.615850e-47 |
| Msa0961560 | Msa0965310 | 0.839027 | 2.025307e-57 | -8.615850e-47 |
| Msa0964840 | Msa0965310 | 0.817570 | 3.080098e-52 | -8.615850e-47 |
| Msa0965310 | Msa0979510 | 0.818787 | 1.633481e-52 | -8.615850e-47 |
| Msa0965310 | Msa0996270 | 0.826622 | 2.452173e-54 | -8.615850e-47 |
| Msa0965310 | Msa0999300 | 0.827286 | 1.701195e-54 | -8.615850e-47 |
| Msa0965310 | Msa0999340 | 0.890772 | 7.282939e-74 | -8.615850e-47 |
| Msa0965310 | Msa0999350 | 0.872122 | 4.053772e-67 | -8.615850e-47 |
| Msa0965310 | Msa0999360 | 0.849682 | 2.763958e-60 | -8.615850e-47 |
| Msa0965310 | Msa0999390 | 0.896816 | 2.564619e-76 | -8.615850e-47 |
| Msa0965310 | Msa0999400 | 0.863788 | 1.938456e-64 | -8.615850e-47 |
| Msa0965310 | Msa0999410 | 0.855671 | 5.395472e-62 | -8.615850e-47 |
| Msa0965310 | Msa0999700 | 0.974888 | 5.900287e-139 | -8.615850e-47 |
| Msa0965310 | Msa1001890 | 0.813001 | 3.192308e-51 | -8.615850e-47 |
| Msa0965310 | Msa1060580 | 0.812793 | 3.545089e-51 | -8.615850e-47 |
| Msa0965310 | Msa1084520 | 0.814648 | 1.384132e-51 | -8.615850e-47 |
| Msa0965310 | Msa1092020 | 0.820821 | 5.602563e-53 | -8.615850e-47 |
| Msa0965310 | Msa1125810 | 0.816757 | 4.691356e-52 | -8.615850e-47 |
| Msa0965310 | Msa1135380 | 0.815248 | 1.018917e-51 | -8.615850e-47 |
| Msa0965310 | Msa1145020 | 0.807711 | 4.423741e-50 | -8.615850e-47 |
| Msa0965310 | Msa1171310 | 0.804203 | 2.418372e-49 | -8.615850e-47 |
| Msa0965310 | Msa1176580 | 0.806459 | 8.142782e-50 | -8.615850e-47 |
| Msa0965310 | Msa1177400 | 0.805113 | 1.561741e-49 | -8.615850e-47 |
| Msa0965310 | Msa1179360 | 0.801687 | 8.005147e-49 | -8.615850e-47 |
| Msa0965310 | Msa1179520 | 0.809149 | 2.182268e-50 | -8.615850e-47 |
| Msa0965310 | Msa1183430 | 0.803854 | 2.857714e-49 | -8.615850e-47 |
| Msa0965310 | Msa1201110 | 0.830866 | 2.307296e-55 | -8.615850e-47 |
| Msa0965310 | Msa1201160 | 0.846462 | 2.140136e-59 | -8.615850e-47 |
| Msa0965310 | Msa1228190 | 0.891178 | 5.033455e-74 | -8.615850e-47 |
| Msa0965310 | Msa1233560 | 0.811297 | 7.513444e-51 | -8.615850e-47 |
| Msa0965310 | Msa1260610 | 0.806376 | 8.479208e-50 | -8.615850e-47 |
| Msa0965310 | Msa1271260 | 0.878146 | 3.556361e-69 | -8.615850e-47 |
| Msa0965310 | Msa1275250 | 0.808236 | 3.420812e-50 | -8.615850e-47 |
| Msa0965310 | Msa1292010 | 0.809488 | 1.845821e-50 | -8.615850e-47 |
| Msa0965310 | Msa1294290 | 0.860553 | 1.906765e-63 | -8.615850e-47 |
| Msa0965310 | Msa1313970 | 0.803556 | 3.295410e-49 | -8.615850e-47 |
| Msa0965310 | Msa1326630 | 0.805785 | 1.128941e-49 | -8.615850e-47 |
| Msa0965310 | Msa1339440 | 0.820797 | 5.672518e-53 | -8.615850e-47 |
| Msa0965310 | Msa1345420 | 0.801132 | 1.040002e-48 | -8.615850e-47 |
| Msa0965310 | Msa1379970 | 0.810857 | 9.354789e-51 | -8.615850e-47 |
| Msa0965310 | Msa1388770 | 0.805589 | 1.240877e-49 | -8.615850e-47 |
| Msa0965310 | Msa1389050 | 0.973430 | 2.049934e-136 | -8.615850e-47 |
| Msa0965310 | Msa1394890 | 0.805592 | 1.239049e-49 | -8.615850e-47 |
| Msa0965310 | Msa1421550 | 0.809949 | 1.469245e-50 | -8.615850e-47 |
| Msa0965310 | Msa1431850 | 0.810285 | 1.243491e-50 | -8.615850e-47 |
| Msa0965310 | Msa1435480 | 0.857284 | 1.812835e-62 | -8.615850e-47 |
| Msa0965310 | Msa1458910 | 0.853459 | 2.356636e-61 | -8.615850e-47 |
| Msa0965310 | Msa1462530 | 0.821259 | 4.441223e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965310 | MtrunA17_Chr6g0485861 | 97.538 | 528 | 12 | 1 | 1 | 527 | 22 | 549 | 0.0 | 1061 |
| Msa0965310 | MtrunA17_Chr2g0331631 | 60.413 | 533 | 173 | 12 | 6 | 527 | 28 | 533 | 0.0 | 580 |
| Msa0965310 | MtrunA17_Chr4g0004771 | 64.579 | 463 | 143 | 11 | 74 | 527 | 90 | 540 | 0.0 | 572 |
| Msa0965310 | MtrunA17_Chr7g0240501 | 52.451 | 408 | 156 | 5 | 73 | 460 | 183 | 572 | 1.34e-142 | 425 |
| Msa0965310 | MtrunA17_Chr4g0008771 | 53.704 | 378 | 159 | 4 | 62 | 424 | 84 | 460 | 1.41e-135 | 404 |
| Msa0965310 | MtrunA17_Chr4g0038651 | 52.533 | 375 | 160 | 5 | 73 | 430 | 86 | 459 | 1.76e-131 | 394 |
| Msa0965310 | MtrunA17_Chr3g0112731 | 50.653 | 383 | 163 | 5 | 73 | 436 | 99 | 474 | 4.29e-130 | 391 |
| Msa0965310 | MtrunA17_Chr5g0436141 | 51.316 | 380 | 159 | 5 | 76 | 436 | 84 | 456 | 8.58e-130 | 390 |
| Msa0965310 | MtrunA17_Chr8g0348921 | 47.074 | 376 | 174 | 5 | 73 | 424 | 96 | 470 | 6.00e-119 | 358 |
| Msa0965310 | MtrunA17_Chr7g0247761 | 43.780 | 418 | 167 | 7 | 74 | 424 | 113 | 529 | 1.41e-109 | 336 |
| Msa0965310 | MtrunA17_Chr5g0408591 | 45.378 | 357 | 183 | 6 | 73 | 419 | 117 | 471 | 9.81e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0965310 | AT3G24620.1 | 65.563 | 453 | 139 | 6 | 76 | 527 | 87 | 523 | 0.0 | 577 |
| Msa0965310 | AT4G13240.1 | 62.979 | 470 | 150 | 7 | 65 | 527 | 65 | 517 | 0.0 | 575 |
| Msa0965310 | AT1G79860.1 | 62.582 | 457 | 127 | 11 | 78 | 527 | 96 | 515 | 0.0 | 541 |
| Msa0965310 | AT1G52240.1 | 61.894 | 454 | 150 | 7 | 78 | 527 | 108 | 542 | 0.0 | 538 |
| Msa0965310 | AT5G19560.1 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0965310 | AT5G19560.5 | 57.328 | 464 | 176 | 7 | 73 | 527 | 43 | 493 | 3.49e-174 | 501 |
| Msa0965310 | AT5G19560.4 | 57.328 | 464 | 176 | 7 | 73 | 527 | 62 | 512 | 7.19e-174 | 500 |
| Msa0965310 | AT3G16130.1 | 50.962 | 520 | 213 | 11 | 19 | 525 | 44 | 534 | 3.23e-164 | 477 |
| Msa0965310 | AT5G19560.2 | 63.855 | 332 | 116 | 2 | 59 | 387 | 48 | 378 | 3.38e-148 | 430 |
| Msa0965310 | AT5G02010.1 | 48.798 | 416 | 189 | 6 | 73 | 465 | 69 | 483 | 1.01e-137 | 409 |
| Msa0965310 | AT4G38430.1 | 52.073 | 386 | 165 | 5 | 73 | 439 | 89 | 473 | 4.15e-135 | 403 |
| Msa0965310 | AT5G05940.1 | 50.943 | 371 | 160 | 4 | 74 | 423 | 102 | 471 | 1.39e-128 | 388 |
| Msa0965310 | AT5G19560.3 | 55.108 | 372 | 145 | 7 | 165 | 527 | 5 | 363 | 7.35e-128 | 377 |
| Msa0965310 | AT4G00460.2 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0965310 | AT4G00460.4 | 50.000 | 364 | 163 | 6 | 74 | 419 | 104 | 466 | 9.03e-122 | 366 |
| Msa0965310 | AT3G55660.1 | 45.192 | 416 | 190 | 7 | 37 | 418 | 57 | 468 | 2.15e-118 | 361 |
| Msa0965310 | AT1G01700.1 | 44.731 | 427 | 207 | 8 | 20 | 419 | 54 | 478 | 4.01e-117 | 354 |
| Msa0965310 | AT2G45890.1 | 47.185 | 373 | 170 | 6 | 74 | 424 | 93 | 460 | 2.96e-114 | 346 |
| Msa0965310 | AT1G01700.4 | 41.794 | 457 | 207 | 9 | 20 | 419 | 54 | 508 | 1.65e-110 | 338 |
| Msa0965310 | AT5G05940.2 | 49.552 | 335 | 147 | 4 | 74 | 387 | 102 | 435 | 6.06e-110 | 336 |
| Msa0965310 | AT3G55660.2 | 43.636 | 385 | 179 | 7 | 37 | 387 | 57 | 437 | 3.98e-103 | 317 |
| Msa0965310 | AT4G00460.3 | 47.401 | 327 | 153 | 6 | 111 | 419 | 8 | 333 | 2.41e-101 | 309 |
| Msa0965310 | AT1G31650.2 | 42.204 | 372 | 201 | 5 | 74 | 434 | 108 | 476 | 1.56e-96 | 303 |
| Msa0965310 | AT1G01700.3 | 41.832 | 404 | 199 | 9 | 20 | 389 | 54 | 455 | 2.68e-96 | 300 |
| Msa0965310 | AT1G31650.1 | 42.204 | 372 | 201 | 5 | 74 | 434 | 136 | 504 | 4.18e-96 | 303 |
| Msa0965310 | AT4G00460.1 | 52.535 | 217 | 93 | 3 | 74 | 281 | 104 | 319 | 4.34e-73 | 236 |
| Msa0965310 | AT1G01700.5 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
| Msa0965310 | AT1G01700.2 | 45.000 | 280 | 134 | 5 | 20 | 281 | 54 | 331 | 6.09e-71 | 231 |
Find 111 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTAACATTGTCTTTC+TGG | 0.080935 | 6_3:+92665599 | None:intergenic |
| TTGTTATCACCTTGTTATAT+TGG | 0.258055 | 6_3:+92665007 | None:intergenic |
| CCATGGCTGCTTTAAGTACT+TGG | 0.282520 | 6_3:+92665581 | None:intergenic |
| TTGAAGCTTCTATTGTAATA+TGG | 0.285225 | 6_3:-92665185 | Msa0965310:CDS |
| TTAGAGATCAAAATGAATTC+TGG | 0.294452 | 6_3:-92665753 | Msa0965310:CDS |
| AATGTAATTATAGGACATTT+TGG | 0.333210 | 6_3:-92665782 | Msa0965310:intron |
| AATGACTCTCTCAGATTTCA+TGG | 0.338997 | 6_3:-92664372 | Msa0965310:CDS |
| ATCCCACCATCCTCAGAGTT+TGG | 0.353088 | 6_3:+92664428 | None:intergenic |
| AGATTTGCTAAGCTTCTTCT+AGG | 0.357290 | 6_3:-92667070 | Msa0965310:CDS |
| ATTATACCAGTTGGTGGCTT+AGG | 0.357434 | 6_3:+92667598 | None:intergenic |
| CGATCTGCTCATGAACATTC+CGG | 0.375648 | 6_3:-92665997 | Msa0965310:CDS |
| TATTCAAGGTTTATTTGATA+AGG | 0.386545 | 6_3:-92667779 | Msa0965310:CDS |
| GTTGGAGGAACTTTAACAAC+TGG | 0.388069 | 6_3:+92665658 | None:intergenic |
| GTTGTTAAAGTTCCTCCAAC+AGG | 0.390259 | 6_3:-92665655 | Msa0965310:CDS |
| ATATTGAGAGCAACTCCTAT+TGG | 0.393413 | 6_3:+92667661 | None:intergenic |
| TATACCAGCAAGGTTTGTTA+TGG | 0.393796 | 6_3:+92666991 | None:intergenic |
| TACTGTGGAATACTTTGATC+CGG | 0.414609 | 6_3:-92665271 | Msa0965310:CDS |
| CGGCTGGATGCCGCCAACGA+TGG | 0.421001 | 6_3:+92664494 | None:intergenic |
| ATTCTCGTTGGATTCTTTGC+CGG | 0.425301 | 6_3:-92664468 | Msa0965310:CDS |
| TTCAGAAACTGATTTGATGA+AGG | 0.432350 | 6_3:-92667095 | Msa0965310:intron |
| TGGAAAATCTTCATGGAGTT+CGG | 0.432609 | 6_3:-92665142 | Msa0965310:CDS |
| GTCTTCCTTTCTTGAGACAT+TGG | 0.438853 | 6_3:+92666582 | None:intergenic |
| ATAAAGATGGAAAATCTTCA+TGG | 0.441204 | 6_3:-92665149 | Msa0965310:CDS |
| AAGCTGAGTGTTTACCTCCA+TGG | 0.443142 | 6_3:+92666467 | None:intergenic |
| TTTGATAAGGATCATGATGA+AGG | 0.446490 | 6_3:-92667766 | Msa0965310:CDS |
| TATCAGATGTAGCTGTGAAA+TGG | 0.447982 | 6_3:-92665630 | Msa0965310:CDS |
| TTCAAGAGTAATAGAAAGCT+TGG | 0.450795 | 6_3:-92664576 | Msa0965310:CDS |
| ATGATCAAACAAGAGTTTCC+AGG | 0.451515 | 6_3:-92665063 | Msa0965310:CDS |
| AATGCCATAACAAACCTTGC+TGG | 0.452672 | 6_3:-92666995 | Msa0965310:intron |
| AGTGAAGACTGTGGAAGTCC+TGG | 0.455369 | 6_3:+92665045 | None:intergenic |
| AAATGGTGTTTCTTCAGCAC+TGG | 0.456274 | 6_3:-92667026 | Msa0965310:CDS |
| AAGTTCTTGACCTCAAGAAT+AGG | 0.466447 | 6_3:-92665209 | Msa0965310:CDS |
| GACATGTCAGGTGCAGGAAA+TGG | 0.467588 | 6_3:-92667043 | Msa0965310:CDS |
| CTTCTATTGTAATATGGAAA+AGG | 0.469644 | 6_3:-92665179 | Msa0965310:CDS |
| CCATTGGAAACTCAGCCAAT+AGG | 0.473248 | 6_3:-92667676 | Msa0965310:CDS |
| TCTTGAATAGCTCTCTAGAA+TGG | 0.475283 | 6_3:+92664592 | None:intergenic |
| GGACAAAAGGAGATTTGAAA+AGG | 0.479375 | 6_3:-92664346 | Msa0965310:CDS |
| ATGCCTCCTAAGCCACCAAC+TGG | 0.479648 | 6_3:-92667604 | Msa0965310:intron |
| CGATATTAATGTCGCGCGAT+AGG | 0.480793 | 6_3:+92664200 | None:intergenic |
| GCATCAAGCTTGCGCAAGGC+CGG | 0.484296 | 6_3:+92665978 | None:intergenic |
| TACTTGAGCATTTATTGCCA+TGG | 0.488291 | 6_3:+92665564 | None:intergenic |
| GATTTCATGGGATGGACAAA+AGG | 0.489636 | 6_3:-92664359 | Msa0965310:CDS |
| AGAGATTCAATGTAGTTGTC+AGG | 0.493552 | 6_3:+92665523 | None:intergenic |
| AAACCTTGAATATGTTTCCC+AGG | 0.494123 | 6_3:+92667790 | None:intergenic |
| TTGAAAAGGACTAATTCTAC+AGG | 0.501607 | 6_3:-92664332 | Msa0965310:CDS |
| GGTGGAGAAAAGAAATTGAA+TGG | 0.504792 | 6_3:-92666557 | Msa0965310:CDS |
| ATACCAGTTGGTGGCTTAGG+AGG | 0.512969 | 6_3:+92667601 | None:intergenic |
| AAAAGGAAGATGAATAAAGA+TGG | 0.515789 | 6_3:-92665162 | Msa0965310:CDS |
| CTCGTTGGATTCTTTGCCGG+TGG | 0.515807 | 6_3:-92664465 | Msa0965310:CDS |
| AACTCTGAGGATGGTGGGAT+AGG | 0.517108 | 6_3:-92664425 | Msa0965310:CDS |
| AAGAATCCAACGAGAATCTC+CGG | 0.517591 | 6_3:+92664474 | None:intergenic |
| CATTGCATCAAGCTTGCGCA+AGG | 0.519705 | 6_3:+92665974 | None:intergenic |
| CTGAGGATGGTGGGATAGGA+AGG | 0.520302 | 6_3:-92664421 | Msa0965310:CDS |
| AATTCAGCATGCAGAAATCA+AGG | 0.528944 | 6_3:-92667843 | None:intergenic |
| GTCAAGAACTTTATGTTCTG+TGG | 0.529156 | 6_3:+92665221 | None:intergenic |
| CTCTCTCAGATTTCATGGGA+TGG | 0.531255 | 6_3:-92664367 | Msa0965310:CDS |
| CTCAAAGAAAGAGTGACAAA+TGG | 0.531945 | 6_3:-92665687 | Msa0965310:CDS |
| CCTATTGGCTGAGTTTCCAA+TGG | 0.532644 | 6_3:+92667676 | None:intergenic |
| TCCTTAGCTAACTGTTGTGA+TGG | 0.535551 | 6_3:+92666498 | None:intergenic |
| ATCCCTGGGAAACATATTCA+AGG | 0.535882 | 6_3:-92667793 | Msa0965310:CDS |
| GGAGAAGACATGTCAGGTGC+AGG | 0.536981 | 6_3:-92667049 | Msa0965310:CDS |
| GGCAATAAGCATGGAGAAGA+GGG | 0.538220 | 6_3:-92665121 | Msa0965310:CDS |
| CATCGTTGGCGGCATCCAGC+CGG | 0.540395 | 6_3:-92664493 | Msa0965310:CDS |
| ACTGTGGAATACTTTGATCC+GGG | 0.540800 | 6_3:-92665270 | Msa0965310:CDS |
| GGAGATGTTTGATCAGCCAC+CGG | 0.544079 | 6_3:+92664449 | None:intergenic |
| TGGAGCCAATGTCTCAAGAA+AGG | 0.548345 | 6_3:-92666587 | Msa0965310:CDS |
| CTTCTAGGAGAAGACATGTC+AGG | 0.550196 | 6_3:-92667055 | Msa0965310:CDS |
| CTCCAAACTCTGAGGATGGT+GGG | 0.553349 | 6_3:-92664430 | Msa0965310:CDS |
| AGTTTCCAATGGAATATCAC+TGG | 0.553463 | 6_3:+92667687 | None:intergenic |
| TGCTCAAGTACTATCCGAGA+TGG | 0.555455 | 6_3:-92665551 | Msa0965310:CDS |
| AACCTTGAATATGTTTCCCA+GGG | 0.559119 | 6_3:+92667791 | None:intergenic |
| CCAAGTACTTAAAGCAGCCA+TGG | 0.563065 | 6_3:-92665581 | Msa0965310:CDS |
| TCACAACAGTTAGCTAAGGA+TGG | 0.570145 | 6_3:-92666495 | Msa0965310:CDS |
| TCTCCAAACTCTGAGGATGG+TGG | 0.572008 | 6_3:-92664431 | Msa0965310:CDS |
| ATGACTCTCTCAGATTTCAT+GGG | 0.572048 | 6_3:-92664371 | Msa0965310:CDS |
| GCTACATCTGATAACCCTGT+TGG | 0.573819 | 6_3:+92665640 | None:intergenic |
| CGGCAATAAGCATGGAGAAG+AGG | 0.574710 | 6_3:-92665122 | Msa0965310:CDS |
| CTACATTGAATCTCTCCCTA+AGG | 0.579199 | 6_3:-92665515 | Msa0965310:intron |
| AAGCTTCAATCCTATTCTTG+AGG | 0.579814 | 6_3:+92665199 | None:intergenic |
| ATGGAGTTCGGCAATAAGCA+TGG | 0.581044 | 6_3:-92665130 | Msa0965310:CDS |
| ATCCAACGAGAATCTCCGGC+TGG | 0.581392 | 6_3:+92664478 | None:intergenic |
| ATCCAGCCGGAGATTCTCGT+TGG | 0.585511 | 6_3:-92664480 | Msa0965310:CDS |
| GACAAAGAATCCATCGTTGG+CGG | 0.587221 | 6_3:-92664504 | Msa0965310:CDS |
| ATATACCAGTGATATTCCAT+TGG | 0.587677 | 6_3:-92667692 | Msa0965310:CDS |
| TTGATAAGGATCATGATGAA+GGG | 0.588470 | 6_3:-92667765 | Msa0965310:CDS |
| AAATCTGAGAGAGTCATTGA+TGG | 0.588625 | 6_3:+92664377 | None:intergenic |
| ACATCTCCAAACTCTGAGGA+TGG | 0.591064 | 6_3:-92664434 | Msa0965310:CDS |
| GTTGTCAGGTATCTCCATCT+CGG | 0.591503 | 6_3:+92665537 | None:intergenic |
| ATTGTTGAGAGGAATTGTCC+CGG | 0.601613 | 6_3:+92665252 | None:intergenic |
| TCCATCACAACAGTTAGCTA+AGG | 0.603193 | 6_3:-92666499 | Msa0965310:CDS |
| ACATCTGATAACCCTGTTGG+AGG | 0.604210 | 6_3:+92665643 | None:intergenic |
| TTGTTAAAGTTCCTCCAACA+GGG | 0.606551 | 6_3:-92665654 | Msa0965310:CDS |
| CAGCAAAATCCAATATAACA+AGG | 0.607276 | 6_3:-92665016 | Msa0965310:intron |
| AAAAGTGATGAGGAAGCTGA+AGG | 0.607695 | 6_3:-92665721 | Msa0965310:CDS |
| TGTCTCAAGAAAGGAAGACT+AGG | 0.613102 | 6_3:-92666578 | Msa0965310:CDS |
| TTGGAGGAACTTTAACAACT+GGG | 0.617010 | 6_3:+92665659 | None:intergenic |
| CTCAAGAAAGGAAGACTAGG+TGG | 0.617206 | 6_3:-92666575 | Msa0965310:CDS |
| AATGACAAAGAATCCATCGT+TGG | 0.619614 | 6_3:-92664507 | Msa0965310:CDS |
| AAAGAAAGAGTGACAAATGG+TGG | 0.626399 | 6_3:-92665684 | Msa0965310:CDS |
| CCAAAATGATCACAGGATGT+GGG | 0.631669 | 6_3:-92664620 | Msa0965310:intron |
| GGGACAATTCCTCTCAACAA+TGG | 0.632556 | 6_3:-92665250 | Msa0965310:CDS |
| CAGAATGGTAGAGAAAGCCT+TGG | 0.634845 | 6_3:-92665315 | Msa0965310:CDS |
| GATCTATAAGTGCATTACTG+TGG | 0.648265 | 6_3:-92665286 | Msa0965310:CDS |
| AGCTAAGGATGGATCAACCA+TGG | 0.652900 | 6_3:-92666484 | Msa0965310:CDS |
| ATTTGTAGATCATGACGACT+CGG | 0.653527 | 6_3:-92666028 | Msa0965310:intron |
| ACTTATAGATCGACTCACCA+AGG | 0.679802 | 6_3:+92665298 | None:intergenic |
| TGGTCATGTCCATTGTTGAG+AGG | 0.679809 | 6_3:+92665241 | None:intergenic |
| TCAAACATCTCCAAACTCTG+AGG | 0.682927 | 6_3:-92664438 | Msa0965310:CDS |
| TCTGAGAGAGTCATTGATGG+TGG | 0.705269 | 6_3:+92664380 | None:intergenic |
| CTGATATCAAGTGAAGACTG+TGG | 0.722584 | 6_3:+92665036 | None:intergenic |
| TAAGGATGGATCAACCATGG+AGG | 0.766138 | 6_3:-92666481 | Msa0965310:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTATCAATTTAAAAAA+AGG | - | chr6_3:92664759-92664778 | Msa0965310:intron | 10.0% |
| !! | AAAAATAAAAACTATAACAA+AGG | - | chr6_3:92664840-92664859 | Msa0965310:intron | 10.0% |
| !! | TATTTAATTAATGTATATCA+TGG | - | chr6_3:92665599-92665618 | Msa0965310:CDS | 10.0% |
| !!! | AAAAATCACAATTTATTTTG+TGG | - | chr6_3:92664635-92664654 | Msa0965310:intron | 15.0% |
| !! | ATTTAAAAAAAGGTAATAAG+TGG | - | chr6_3:92664769-92664788 | Msa0965310:intron | 15.0% |
| !!! | TTTTTAAATGAAAACAACAT+TGG | - | chr6_3:92665371-92665390 | Msa0965310:intron | 15.0% |
| !! | TCTAATAGTAATTAAGAAAA+AGG | + | chr6_3:92666215-92666234 | None:intergenic | 15.0% |
| !! | TCTTAATTACTATTAGAATT+TGG | - | chr6_3:92666218-92666237 | Msa0965310:intron | 15.0% |
| !! | TTTAAATAATATCGTCTAAA+GGG | + | chr6_3:92667215-92667234 | None:intergenic | 15.0% |
| !! | TATTCAAGGTTTATTTGATA+AGG | - | chr6_3:92664258-92664277 | Msa0965310:CDS | 20.0% |
| !! | GCATAATAACTTAAAATGTA+GGG | + | chr6_3:92664471-92664490 | None:intergenic | 20.0% |
| !! | TGCATAATAACTTAAAATGT+AGG | + | chr6_3:92664472-92664491 | None:intergenic | 20.0% |
| !!! | TTGTATATATTTTCCAAAAG+TGG | - | chr6_3:92665113-92665132 | Msa0965310:CDS | 20.0% |
| !!! | TTTTTGATGATATTCGAATT+TGG | + | chr6_3:92665830-92665849 | None:intergenic | 20.0% |
| !!! | AATTAAGAAAAAGGTATGTT+TGG | + | chr6_3:92666206-92666225 | None:intergenic | 20.0% |
| !!! | AATGTAATTATAGGACATTT+TGG | - | chr6_3:92666255-92666274 | Msa0965310:intron | 20.0% |
| !! | TGAGTTTAATGTAAAGTTAT+TGG | + | chr6_3:92667114-92667133 | None:intergenic | 20.0% |
| !! | TTTACATTAAACTCAAAACA+CGG | - | chr6_3:92667119-92667138 | Msa0965310:intron | 20.0% |
| !! | GTTTAAATAATATCGTCTAA+AGG | + | chr6_3:92667216-92667235 | None:intergenic | 20.0% |
| !! | AAAAAAAGAACAAACAAGAT+TGG | + | chr6_3:92667334-92667353 | None:intergenic | 20.0% |
| !!! | TCCAAGTAATAATTTTTCTT+CGG | + | chr6_3:92667786-92667805 | None:intergenic | 20.0% |
| !! | CTTAGTTCATGACTTTTAAA+TGG | + | chr6_3:92664518-92664537 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGTGGTGTTAGT+CGG | - | chr6_3:92664645-92664664 | Msa0965310:intron | 25.0% |
| !!! | TTTTTTTTGTCTCTACATGA+AGG | - | chr6_3:92664870-92664889 | Msa0965310:intron | 25.0% |
| !! | TTAGAATATGTTTCCACTTT+TGG | + | chr6_3:92665129-92665148 | None:intergenic | 25.0% |
| ! | CAAAAATGTAGTTACTTACA+AGG | + | chr6_3:92666091-92666110 | None:intergenic | 25.0% |
| ! | ACTTATTTGAACTTATCTAC+TGG | + | chr6_3:92666179-92666198 | None:intergenic | 25.0% |
| ! | TAGAATTTGGACTAACTTTA+TGG | - | chr6_3:92666231-92666250 | Msa0965310:intron | 25.0% |
| ! | CTTTATGGCAATGTAATTAT+AGG | - | chr6_3:92666246-92666265 | Msa0965310:intron | 25.0% |
| ! | TTAGAGATCAAAATGAATTC+TGG | - | chr6_3:92666284-92666303 | Msa0965310:intron | 25.0% |
| ! | TCCCTAAGGTAATATAATTA+AGG | - | chr6_3:92666536-92666555 | Msa0965310:CDS | 25.0% |
| ! | CCCTTAATTATATTACCTTA+GGG | + | chr6_3:92666540-92666559 | None:intergenic | 25.0% |
| ! | CCCTAAGGTAATATAATTAA+GGG | - | chr6_3:92666537-92666556 | Msa0965310:CDS | 25.0% |
| ! | ACCCTTAATTATATTACCTT+AGG | + | chr6_3:92666541-92666560 | None:intergenic | 25.0% |
| ! | AAGGTAATATAATTAAGGGT+CGG | - | chr6_3:92666541-92666560 | Msa0965310:CDS | 25.0% |
| !! | TTTTTATAAGCTCTCTCAAA+CGG | + | chr6_3:92666616-92666635 | None:intergenic | 25.0% |
| ! | TTGAAGCTTCTATTGTAATA+TGG | - | chr6_3:92666852-92666871 | Msa0965310:intron | 25.0% |
| ! | CTTCTATTGTAATATGGAAA+AGG | - | chr6_3:92666858-92666877 | Msa0965310:intron | 25.0% |
| ! | AAAAGGAAGATGAATAAAGA+TGG | - | chr6_3:92666875-92666894 | Msa0965310:intron | 25.0% |
| ! | ATAAAGATGGAAAATCTTCA+TGG | - | chr6_3:92666888-92666907 | Msa0965310:intron | 25.0% |
| !! | TTGTTATCACCTTGTTATAT+TGG | + | chr6_3:92667033-92667052 | None:intergenic | 25.0% |
| !! | AATGTAAAGTTATTGGTGTT+TGG | + | chr6_3:92667107-92667126 | None:intergenic | 25.0% |
| ! | TAATAGATTGTTTATCGTTG+AGG | - | chr6_3:92667144-92667163 | Msa0965310:intron | 25.0% |
| !! | ATCTATTTTCTTGTGAATCA+AGG | - | chr6_3:92667356-92667375 | Msa0965310:intron | 25.0% |
| !!! | GATTGATGATGTTTTATATG+TGG | - | chr6_3:92667503-92667522 | Msa0965310:intron | 25.0% |
| !!! | GAAAAAGTTTTGAATAAGCT+TGG | - | chr6_3:92667756-92667775 | Msa0965310:CDS | 25.0% |
| ! | ACCGAAGAAAAATTATTACT+TGG | - | chr6_3:92667782-92667801 | Msa0965310:CDS | 25.0% |
| TTTGATAAGGATCATGATGA+AGG | - | chr6_3:92664271-92664290 | Msa0965310:CDS | 30.0% | |
| TTGATAAGGATCATGATGAA+GGG | - | chr6_3:92664272-92664291 | Msa0965310:CDS | 30.0% | |
| ATATACCAGTGATATTCCAT+TGG | - | chr6_3:92664345-92664364 | Msa0965310:CDS | 30.0% | |
| AGAAAAATTATACCAGTTGG+TGG | + | chr6_3:92664448-92664467 | None:intergenic | 30.0% | |
| AAAGTCATGAACTAAGATCA+TGG | - | chr6_3:92664522-92664541 | Msa0965310:CDS | 30.0% | |
| AAGTCATGAACTAAGATCAT+GGG | - | chr6_3:92664523-92664542 | Msa0965310:CDS | 30.0% | |
| !! | TTCAGAAACTGATTTGATGA+AGG | - | chr6_3:92664942-92664961 | Msa0965310:intron | 30.0% |
| ! | CAAAAAAGTATATACCAGCA+AGG | + | chr6_3:92665059-92665078 | None:intergenic | 30.0% |
| ! | TTTTTGCCCTCAAATCTTTA+TGG | - | chr6_3:92665073-92665092 | Msa0965310:CDS | 30.0% |
| TTCCTACCATAAAGATTTGA+GGG | + | chr6_3:92665082-92665101 | None:intergenic | 30.0% | |
| TTTCCTACCATAAAGATTTG+AGG | + | chr6_3:92665083-92665102 | None:intergenic | 30.0% | |
| CTTTATGGTAGGAAATGAAA+TGG | - | chr6_3:92665088-92665107 | Msa0965310:CDS | 30.0% | |
| AACTTTAATCGTAACTTCGT+AGG | - | chr6_3:92665251-92665270 | Msa0965310:CDS | 30.0% | |
| !! | TTTTGGAGAACAATCAAAGT+TGG | - | chr6_3:92665430-92665449 | Msa0965310:intron | 30.0% |
| GTATCCTAATTGCATATATG+CGG | - | chr6_3:92665782-92665801 | Msa0965310:intron | 30.0% | |
| ! | ATCTAGAAATTTGAAGTCGT+GGG | + | chr6_3:92665946-92665965 | None:intergenic | 30.0% |
| ! | TTAAGTTGCATATCCAAACA+GGG | + | chr6_3:92666114-92666133 | None:intergenic | 30.0% |
| CTTTCATATCTTTGTCAGAA+TGG | - | chr6_3:92666707-92666726 | Msa0965310:intron | 30.0% | |
| CAGCAAAATCCAATATAACA+AGG | - | chr6_3:92667021-92667040 | Msa0965310:CDS | 30.0% | |
| CACTGTTGTTACTCTATATT+CGG | - | chr6_3:92667278-92667297 | Msa0965310:intron | 30.0% | |
| TTCAAGAGTAATAGAAAGCT+TGG | - | chr6_3:92667461-92667480 | Msa0965310:intron | 30.0% | |
| !! | TGGCTTATACAGTTTTATCA+AGG | - | chr6_3:92667481-92667500 | Msa0965310:intron | 30.0% |
| TTGAAAAGGACTAATTCTAC+AGG | - | chr6_3:92667705-92667724 | Msa0965310:CDS | 30.0% | |
| ! | AGAAAAATGTTTGAGATCCC+TGG | - | chr6_3:92664229-92664248 | Msa0965310:CDS | 35.0% |
| ! | GAAAAATGTTTGAGATCCCT+GGG | - | chr6_3:92664230-92664249 | Msa0965310:CDS | 35.0% |
| AACCTTGAATATGTTTCCCA+GGG | + | chr6_3:92664249-92664268 | None:intergenic | 35.0% | |
| AAACCTTGAATATGTTTCCC+AGG | + | chr6_3:92664250-92664269 | None:intergenic | 35.0% | |
| AGTTTCCAATGGAATATCAC+TGG | + | chr6_3:92664353-92664372 | None:intergenic | 35.0% | |
| ATATTGAGAGCAACTCCTAT+TGG | + | chr6_3:92664379-92664398 | None:intergenic | 35.0% | |
| GGGAGAAAAATTATACCAGT+TGG | + | chr6_3:92664451-92664470 | None:intergenic | 35.0% | |
| !! | AGATTTGCTAAGCTTCTTCT+AGG | - | chr6_3:92664967-92664986 | Msa0965310:intron | 35.0% |
| !! | TATACCAGCAAGGTTTGTTA+TGG | + | chr6_3:92665049-92665068 | None:intergenic | 35.0% |
| !! | CATGACATGTGGTTTGTTAT+AGG | - | chr6_3:92665165-92665184 | Msa0965310:CDS | 35.0% |
| ! | TTCCATGTAGCATCTGTTTT+TGG | - | chr6_3:92665413-92665432 | Msa0965310:intron | 35.0% |
| GGTGGAGAAAAGAAATTGAA+TGG | - | chr6_3:92665480-92665499 | Msa0965310:intron | 35.0% | |
| ATTCTGCTTCCATACGATTA+GGG | - | chr6_3:92665622-92665641 | Msa0965310:CDS | 35.0% | |
| ATTCTCCACATTCAGACAAT+TGG | - | chr6_3:92665645-92665664 | Msa0965310:CDS | 35.0% | |
| TTCTCCACATTCAGACAATT+GGG | - | chr6_3:92665646-92665665 | Msa0965310:CDS | 35.0% | |
| CAGTAGTTGTTTGATCAAGA+GGG | + | chr6_3:92665762-92665781 | None:intergenic | 35.0% | |
| TTCTCCGCATATATGCAATT+AGG | + | chr6_3:92665789-92665808 | None:intergenic | 35.0% | |
| ! | GATCTAGAAATTTGAAGTCG+TGG | + | chr6_3:92665947-92665966 | None:intergenic | 35.0% |
| GTCACAGATATATCTAGTGA+TGG | + | chr6_3:92665969-92665988 | None:intergenic | 35.0% | |
| ATTTGTAGATCATGACGACT+CGG | - | chr6_3:92666009-92666028 | Msa0965310:CDS | 35.0% | |
| ! | AACTACATTTTTGCCCTGTT+TGG | - | chr6_3:92666098-92666117 | Msa0965310:intron | 35.0% |
| ! | GTTAAGTTGCATATCCAAAC+AGG | + | chr6_3:92666115-92666134 | None:intergenic | 35.0% |
| GCAACTTAACTATACGCTTA+TGG | - | chr6_3:92666125-92666144 | Msa0965310:intron | 35.0% | |
| GTATGTCTCAAAAAGTGATG+AGG | - | chr6_3:92666306-92666325 | Msa0965310:intron | 35.0% | |
| CTCAAAGAAAGAGTGACAAA+TGG | - | chr6_3:92666350-92666369 | Msa0965310:intron | 35.0% | |
| AAAGAAAGAGTGACAAATGG+TGG | - | chr6_3:92666353-92666372 | Msa0965310:intron | 35.0% | |
| TTGGAGGAACTTTAACAACT+GGG | + | chr6_3:92666381-92666400 | None:intergenic | 35.0% | |
| TTGTTAAAGTTCCTCCAACA+GGG | - | chr6_3:92666383-92666402 | Msa0965310:intron | 35.0% | |
| TATCAGATGTAGCTGTGAAA+TGG | - | chr6_3:92666407-92666426 | Msa0965310:intron | 35.0% | |
| CTTGGTTAACATTGTCTTTC+TGG | + | chr6_3:92666441-92666460 | None:intergenic | 35.0% | |
| TACTTGAGCATTTATTGCCA+TGG | + | chr6_3:92666476-92666495 | None:intergenic | 35.0% | |
| AGAGATTCAATGTAGTTGTC+AGG | + | chr6_3:92666517-92666536 | None:intergenic | 35.0% | |
| AAAAACGCTTAATGATTCCG+CGG | - | chr6_3:92666634-92666653 | Msa0965310:intron | 35.0% | |
| ATTATCTCTATACCATACCG+CGG | + | chr6_3:92666654-92666673 | None:intergenic | 35.0% | |
| GATCTATAAGTGCATTACTG+TGG | - | chr6_3:92666751-92666770 | Msa0965310:intron | 35.0% | |
| TACTGTGGAATACTTTGATC+CGG | - | chr6_3:92666766-92666785 | Msa0965310:intron | 35.0% | |
| GTCAAGAACTTTATGTTCTG+TGG | + | chr6_3:92666819-92666838 | None:intergenic | 35.0% | |
| AAGTTCTTGACCTCAAGAAT+AGG | - | chr6_3:92666828-92666847 | Msa0965310:intron | 35.0% | |
| AAGCTTCAATCCTATTCTTG+AGG | + | chr6_3:92666841-92666860 | None:intergenic | 35.0% | |
| TGGAAAATCTTCATGGAGTT+CGG | - | chr6_3:92666895-92666914 | Msa0965310:intron | 35.0% | |
| ATGATCAAACAAGAGTTTCC+AGG | - | chr6_3:92666974-92666993 | Msa0965310:intron | 35.0% | |
| GATTGTTTATCGTTGAGGTA+TGG | - | chr6_3:92667149-92667168 | Msa0965310:intron | 35.0% | |
| GCTCATAGTTTACTGATAAG+TGG | - | chr6_3:92667171-92667190 | Msa0965310:intron | 35.0% | |
| ! | TCTTGAATAGCTCTCTAGAA+TGG | + | chr6_3:92667448-92667467 | None:intergenic | 35.0% |
| AATGACAAAGAATCCATCGT+TGG | - | chr6_3:92667530-92667549 | Msa0965310:intron | 35.0% | |
| AAATCTGAGAGAGTCATTGA+TGG | + | chr6_3:92667663-92667682 | None:intergenic | 35.0% | |
| AATGACTCTCTCAGATTTCA+TGG | - | chr6_3:92667665-92667684 | Msa0965310:CDS | 35.0% | |
| ATGACTCTCTCAGATTTCAT+GGG | - | chr6_3:92667666-92667685 | Msa0965310:CDS | 35.0% | |
| GGACAAAAGGAGATTTGAAA+AGG | - | chr6_3:92667691-92667710 | Msa0965310:CDS | 35.0% | |
| ATCCCTGGGAAACATATTCA+AGG | - | chr6_3:92664244-92664263 | Msa0965310:CDS | 40.0% | |
| !! | ATTATACCAGTTGGTGGCTT+AGG | + | chr6_3:92664442-92664461 | None:intergenic | 40.0% |
| AAATGGTGTTTCTTCAGCAC+TGG | - | chr6_3:92665011-92665030 | Msa0965310:intron | 40.0% | |
| AATGCCATAACAAACCTTGC+TGG | - | chr6_3:92665042-92665061 | Msa0965310:CDS | 40.0% | |
| TGCCCTCAAATCTTTATGGT+AGG | - | chr6_3:92665077-92665096 | Msa0965310:CDS | 40.0% | |
| CTCCAAAAACAGATGCTACA+TGG | + | chr6_3:92665418-92665437 | None:intergenic | 40.0% | |
| GTCTTCCTTTCTTGAGACAT+TGG | + | chr6_3:92665458-92665477 | None:intergenic | 40.0% | |
| TGTCTCAAGAAAGGAAGACT+AGG | - | chr6_3:92665459-92665478 | Msa0965310:intron | 40.0% | |
| TCCATCACAACAGTTAGCTA+AGG | - | chr6_3:92665538-92665557 | Msa0965310:CDS | 40.0% | |
| TCCTTAGCTAACTGTTGTGA+TGG | + | chr6_3:92665542-92665561 | None:intergenic | 40.0% | |
| TCACAACAGTTAGCTAAGGA+TGG | - | chr6_3:92665542-92665561 | Msa0965310:CDS | 40.0% | |
| GATTCTGCTTCCATACGATT+AGG | - | chr6_3:92665621-92665640 | Msa0965310:CDS | 40.0% | |
| TTGTCCCAATTGTCTGAATG+TGG | + | chr6_3:92665653-92665672 | None:intergenic | 40.0% | |
| TTCAGACAATTGGGACAATG+TGG | - | chr6_3:92665655-92665674 | Msa0965310:CDS | 40.0% | |
| CCAGTAGTTGTTTGATCAAG+AGG | + | chr6_3:92665763-92665782 | None:intergenic | 40.0% | |
| CCTCTTGATCAAACAACTAC+TGG | - | chr6_3:92665760-92665779 | Msa0965310:CDS | 40.0% | |
| AAAAGTGATGAGGAAGCTGA+AGG | - | chr6_3:92666316-92666335 | Msa0965310:intron | 40.0% | |
| GTTGGAGGAACTTTAACAAC+TGG | + | chr6_3:92666382-92666401 | None:intergenic | 40.0% | |
| GTTGTTAAAGTTCCTCCAAC+AGG | - | chr6_3:92666382-92666401 | Msa0965310:intron | 40.0% | |
| CTACATTGAATCTCTCCCTA+AGG | - | chr6_3:92666522-92666541 | Msa0965310:CDS | 40.0% | |
| ! | ACTTATAGATCGACTCACCA+AGG | + | chr6_3:92666742-92666761 | None:intergenic | 40.0% |
| ACTGTGGAATACTTTGATCC+GGG | - | chr6_3:92666767-92666786 | Msa0965310:intron | 40.0% | |
| ATTGTTGAGAGGAATTGTCC+CGG | + | chr6_3:92666788-92666807 | None:intergenic | 40.0% | |
| CTGATATCAAGTGAAGACTG+TGG | + | chr6_3:92667004-92667023 | None:intergenic | 40.0% | |
| GTTACTCTATATTCGGAGAC+TGG | - | chr6_3:92667285-92667304 | Msa0965310:intron | 40.0% | |
| CAAGATTGGATCACGAAGTT+TGG | + | chr6_3:92667320-92667339 | None:intergenic | 40.0% | |
| ACTGCTTCCAAAATGATCAC+AGG | - | chr6_3:92667410-92667429 | Msa0965310:intron | 40.0% | |
| TCCAAAATGATCACAGGATG+TGG | - | chr6_3:92667416-92667435 | Msa0965310:intron | 40.0% | |
| CCAAAATGATCACAGGATGT+GGG | - | chr6_3:92667417-92667436 | Msa0965310:intron | 40.0% | |
| AAGAATCCAACGAGAATCTC+CGG | + | chr6_3:92667566-92667585 | None:intergenic | 40.0% | |
| ATTCTCGTTGGATTCTTTGC+CGG | - | chr6_3:92667569-92667588 | Msa0965310:intron | 40.0% | |
| TCAAACATCTCCAAACTCTG+AGG | - | chr6_3:92667599-92667618 | Msa0965310:intron | 40.0% | |
| GATTTCATGGGATGGACAAA+AGG | - | chr6_3:92667678-92667697 | Msa0965310:CDS | 40.0% | |
| ! | CCTATTGGCTGAGTTTCCAA+TGG | + | chr6_3:92664364-92664383 | None:intergenic | 45.0% |
| CCATTGGAAACTCAGCCAAT+AGG | - | chr6_3:92664361-92664380 | Msa0965310:CDS | 45.0% | |
| ! | CTTCTAGGAGAAGACATGTC+AGG | - | chr6_3:92664982-92665001 | Msa0965310:intron | 45.0% |
| GTGTCACATGACATGACATG+TGG | - | chr6_3:92665154-92665173 | Msa0965310:CDS | 45.0% | |
| TGGAGCCAATGTCTCAAGAA+AGG | - | chr6_3:92665450-92665469 | Msa0965310:intron | 45.0% | |
| CTCAAGAAAGGAAGACTAGG+TGG | - | chr6_3:92665462-92665481 | Msa0965310:intron | 45.0% | |
| AGCTAAGGATGGATCAACCA+TGG | - | chr6_3:92665553-92665572 | Msa0965310:CDS | 45.0% | |
| TAAGGATGGATCAACCATGG+AGG | - | chr6_3:92665556-92665575 | Msa0965310:CDS | 45.0% | |
| AAGCTGAGTGTTTACCTCCA+TGG | + | chr6_3:92665573-92665592 | None:intergenic | 45.0% | |
| GTGGAGAATCCCTAATCGTA+TGG | + | chr6_3:92665634-92665653 | None:intergenic | 45.0% | |
| TGTGGCCGTTTGATCATGAT+CGG | - | chr6_3:92665673-92665692 | Msa0965310:CDS | 45.0% | |
| ACCGTCCGATCATGATCAAA+CGG | + | chr6_3:92665681-92665700 | None:intergenic | 45.0% | |
| CGATCTGCTCATGAACATTC+CGG | - | chr6_3:92666040-92666059 | Msa0965310:intron | 45.0% | |
| ACATCTGATAACCCTGTTGG+AGG | + | chr6_3:92666397-92666416 | None:intergenic | 45.0% | |
| GCTACATCTGATAACCCTGT+TGG | + | chr6_3:92666400-92666419 | None:intergenic | 45.0% | |
| ! | CCATGGCTGCTTTAAGTACT+TGG | + | chr6_3:92666459-92666478 | None:intergenic | 45.0% |
| CCAAGTACTTAAAGCAGCCA+TGG | - | chr6_3:92666456-92666475 | Msa0965310:intron | 45.0% | |
| TGCTCAAGTACTATCCGAGA+TGG | - | chr6_3:92666486-92666505 | Msa0965310:CDS | 45.0% | |
| GTTGTCAGGTATCTCCATCT+CGG | + | chr6_3:92666503-92666522 | None:intergenic | 45.0% | |
| CAGAATGGTAGAGAAAGCCT+TGG | - | chr6_3:92666722-92666741 | Msa0965310:intron | 45.0% | |
| GGGACAATTCCTCTCAACAA+TGG | - | chr6_3:92666787-92666806 | Msa0965310:intron | 45.0% | |
| TGGTCATGTCCATTGTTGAG+AGG | + | chr6_3:92666799-92666818 | None:intergenic | 45.0% | |
| ATGGAGTTCGGCAATAAGCA+TGG | - | chr6_3:92666907-92666926 | Msa0965310:intron | 45.0% | |
| GGCAATAAGCATGGAGAAGA+GGG | - | chr6_3:92666916-92666935 | Msa0965310:intron | 45.0% | |
| ! | CCCACATCCTGTGATCATTT+TGG | + | chr6_3:92667420-92667439 | None:intergenic | 45.0% |
| GACAAAGAATCCATCGTTGG+CGG | - | chr6_3:92667533-92667552 | Msa0965310:intron | 45.0% | |
| ! | ACATCTCCAAACTCTGAGGA+TGG | - | chr6_3:92667603-92667622 | Msa0965310:intron | 45.0% |
| TCTGAGAGAGTCATTGATGG+TGG | + | chr6_3:92667660-92667679 | None:intergenic | 45.0% | |
| CTCTCTCAGATTTCATGGGA+TGG | - | chr6_3:92667670-92667689 | Msa0965310:CDS | 45.0% | |
| !!! | TGAATTTTTTTTTTAATTAA+TGG | - | chr6_3:92664913-92664932 | Msa0965310:intron | 5.0% |
| !! | ATACCAGTTGGTGGCTTAGG+AGG | + | chr6_3:92664439-92664458 | None:intergenic | 50.0% |
| GACATGTCAGGTGCAGGAAA+TGG | - | chr6_3:92664994-92665013 | Msa0965310:intron | 50.0% | |
| GCCGTTTGATCATGATCGGA+CGG | - | chr6_3:92665677-92665696 | Msa0965310:CDS | 50.0% | |
| ATTTGGACTCCACGCAGTCA+AGG | + | chr6_3:92665813-92665832 | None:intergenic | 50.0% | |
| CATTGCATCAAGCTTGCGCA+AGG | + | chr6_3:92666066-92666085 | None:intergenic | 50.0% | |
| CGCTTAATGATTCCGCGGTA+TGG | - | chr6_3:92666639-92666658 | Msa0965310:intron | 50.0% | |
| CGGCAATAAGCATGGAGAAG+AGG | - | chr6_3:92666915-92666934 | Msa0965310:intron | 50.0% | |
| AGTGAAGACTGTGGAAGTCC+TGG | + | chr6_3:92666995-92667014 | None:intergenic | 50.0% | |
| GGAGATGTTTGATCAGCCAC+CGG | + | chr6_3:92667591-92667610 | None:intergenic | 50.0% | |
| ! | TCTCCAAACTCTGAGGATGG+TGG | - | chr6_3:92667606-92667625 | Msa0965310:CDS | 50.0% |
| ! | CTCCAAACTCTGAGGATGGT+GGG | - | chr6_3:92667607-92667626 | Msa0965310:CDS | 50.0% |
| ATCCCACCATCCTCAGAGTT+TGG | + | chr6_3:92667612-92667631 | None:intergenic | 50.0% | |
| !! | AACTCTGAGGATGGTGGGAT+AGG | - | chr6_3:92667612-92667631 | Msa0965310:CDS | 50.0% |
| ATGCCTCCTAAGCCACCAAC+TGG | - | chr6_3:92664433-92664452 | Msa0965310:CDS | 55.0% | |
| GGAGAAGACATGTCAGGTGC+AGG | - | chr6_3:92664988-92665007 | Msa0965310:intron | 55.0% | |
| AAAGGGCAGTCGAGAGTGAC+TGG | + | chr6_3:92667198-92667217 | None:intergenic | 55.0% | |
| ATCCAGCCGGAGATTCTCGT+TGG | - | chr6_3:92667557-92667576 | Msa0965310:intron | 55.0% | |
| ATCCAACGAGAATCTCCGGC+TGG | + | chr6_3:92667562-92667581 | None:intergenic | 55.0% | |
| CTCGTTGGATTCTTTGCCGG+TGG | - | chr6_3:92667572-92667591 | Msa0965310:intron | 55.0% | |
| !! | CTGAGGATGGTGGGATAGGA+AGG | - | chr6_3:92667616-92667635 | Msa0965310:CDS | 55.0% |
| GCGGAGAATCCTTGACTGCG+TGG | - | chr6_3:92665801-92665820 | Msa0965310:intron | 60.0% | |
| GCATCAAGCTTGCGCAAGGC+CGG | + | chr6_3:92666062-92666081 | None:intergenic | 60.0% | |
| CATCGTTGGCGGCATCCAGC+CGG | - | chr6_3:92667544-92667563 | Msa0965310:intron | 65.0% | |
| CGGCTGGATGCCGCCAACGA+TGG | + | chr6_3:92667546-92667565 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 92664205 | 92667854 | 92664205 | ID=Msa0965310;Name=Msa0965310 |
| chr6_3 | mRNA | 92664205 | 92667854 | 92664205 | ID=Msa0965310-mRNA-1;Parent=Msa0965310;Name=Msa0965310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=30|1|0.71|1|1|1|7|0|527 |
| chr6_3 | exon | 92664205 | 92664627 | 92664205 | ID=Msa0965310-mRNA-1:exon:16889;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92665017 | 92665334 | 92665017 | ID=Msa0965310-mRNA-1:exon:16888;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92665516 | 92665791 | 92665516 | ID=Msa0965310-mRNA-1:exon:16887;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92665968 | 92666042 | 92665968 | ID=Msa0965310-mRNA-1:exon:16886;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92666482 | 92666636 | 92666482 | ID=Msa0965310-mRNA-1:exon:16885;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92666996 | 92667112 | 92666996 | ID=Msa0965310-mRNA-1:exon:16884;Parent=Msa0965310-mRNA-1 |
| chr6_3 | exon | 92667605 | 92667854 | 92667605 | ID=Msa0965310-mRNA-1:exon:16883;Parent=Msa0965310-mRNA-1 |
| chr6_3 | five_prime_UTR | 92667825 | 92667854 | 92667825 | ID=Msa0965310-mRNA-1:five_prime_utr;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92667605 | 92667824 | 92667605 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92666996 | 92667112 | 92666996 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92666482 | 92666636 | 92666482 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92665968 | 92666042 | 92665968 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92665516 | 92665791 | 92665516 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92665017 | 92665334 | 92665017 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| chr6_3 | CDS | 92664205 | 92664627 | 92664205 | ID=Msa0965310-mRNA-1:cds;Parent=Msa0965310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
