AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0886880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886880 MtrunA17_Chr6g0467861 97.830 507 11 0 1 507 1 507 0.0 1019
Msa0886880 MtrunA17_Chr5g0436621 31.384 513 257 11 49 504 8 482 2.70e-76 248
Msa0886880 MtrunA17_Chr4g0005941 33.063 493 292 10 44 507 3 486 1.14e-74 244
Msa0886880 MtrunA17_Chr3g0113181 30.584 497 274 8 42 504 7 466 1.24e-70 233
Msa0886880 MtrunA17_Chr3g0134121 32.704 477 269 12 46 504 5 447 8.44e-64 215
Msa0886880 MtrunA17_Chr3g0134041 30.266 489 283 12 34 507 2 447 1.42e-63 213
Msa0886880 MtrunA17_Chr3g0134111 31.435 474 282 11 47 507 7 450 6.23e-61 207
Msa0886880 MtrunA17_Chr3g0134061 29.412 493 284 10 44 507 2 459 1.05e-59 204
Msa0886880 MtrunA17_Chr4g0053111 31.381 478 273 12 46 504 3 444 1.24e-59 203
Msa0886880 MtrunA17_Chr3g0134091 30.947 475 277 11 46 503 5 445 1.89e-59 202
Msa0886880 MtrunA17_Chr4g0010381 30.435 483 279 13 30 504 3 436 3.16e-59 202
Msa0886880 MtrunA17_Chr8g0359251 30.872 447 264 10 67 504 28 438 5.34e-56 193
Msa0886880 MtrunA17_Chr4g0010361 30.407 467 284 12 47 504 4 438 9.30e-55 190
Msa0886880 MtrunA17_Chr3g0134071 28.831 496 282 12 34 504 2 451 3.23e-53 187
Msa0886880 MtrunA17_Chr8g0354371 31.166 446 260 11 68 504 30 437 1.65e-52 184
Msa0886880 MtrunA17_Chr3g0134101 30.625 480 265 13 46 507 22 451 7.95e-52 182
Msa0886880 MtrunA17_Chr4g0010311 29.399 466 289 13 47 504 4 437 3.45e-51 180
Msa0886880 MtrunA17_Chr3g0125001 30.201 447 269 10 64 504 20 429 3.71e-51 180
Msa0886880 MtrunA17_Chr4g0053081 30.134 448 267 11 68 505 32 443 1.05e-49 176
Msa0886880 MtrunA17_Chr4g0010331 29.810 473 272 14 47 504 4 431 2.42e-49 175
Msa0886880 MtrunA17_Chr3g0087221 29.701 468 292 12 47 504 4 444 1.91e-48 173
Msa0886880 MtrunA17_Chr7g0224131 28.875 471 282 12 47 504 4 434 1.13e-47 171
Msa0886880 MtrunA17_Chr8g0374911 30.464 453 269 13 58 495 40 461 6.17e-45 164
Msa0886880 MtrunA17_Chr4g0053091 29.167 456 253 13 67 505 30 432 3.81e-44 161
Msa0886880 MtrunA17_Chr4g0053061 30.700 443 261 13 68 495 57 468 1.65e-43 160
Msa0886880 MtrunA17_Chr8g0371821 27.197 478 280 21 47 507 3 429 5.45e-40 149
Msa0886880 MtrunA17_Chr4g0001861 26.349 482 283 18 47 507 3 433 3.46e-39 147
Msa0886880 MtrunA17_Chr4g0010121 28.182 440 263 10 64 489 65 465 4.37e-38 145
Msa0886880 MtrunA17_Chr8g0374641 29.741 464 264 18 47 489 4 426 6.22e-38 144
Msa0886880 MtrunA17_Chr4g0010351 28.030 396 249 9 46 434 3 369 2.87e-37 141
Msa0886880 MtrunA17_Chr4g0054081 28.329 413 239 10 99 490 65 441 9.49e-35 135
Msa0886880 MtrunA17_Chr2g0334001 24.520 469 294 16 47 499 3 427 9.43e-32 127
Msa0886880 MtrunA17_Chr3g0087401 27.064 436 258 15 47 456 2 403 1.58e-30 123
Msa0886880 MtrunA17_Chr4g0072041 26.859 417 247 12 99 494 70 449 5.45e-29 119
Msa0886880 MtrunA17_Chr8g0386141 26.907 472 290 17 45 506 5 431 4.33e-27 113
Msa0886880 MtrunA17_Chr3g0132001 27.311 476 290 17 34 499 1 430 2.14e-26 111
Msa0886880 MtrunA17_Chr8g0353901 30.317 221 146 5 289 505 13 229 1.73e-24 102
Msa0886880 MtrunA17_Chr2g0311401 24.096 332 195 10 179 494 2 292 3.13e-24 102
Msa0886880 MtrunA17_Chr6g0455341 27.494 451 268 19 68 494 34 449 4.35e-24 105
Msa0886880 MtrunA17_Chr7g0219291 26.577 444 268 16 46 459 355 770 1.07e-23 105
Msa0886880 MtrunA17_Chr7g0219121 24.696 494 295 20 46 495 7 467 3.43e-23 102
Msa0886880 MtrunA17_Chr7g0253541 24.740 481 305 17 45 499 2 451 5.02e-22 99.0
Msa0886880 MtrunA17_Chr6g0456591 32.461 191 124 4 47 233 18 207 2.45e-21 92.8
Msa0886880 MtrunA17_Chr7g0224121 36.054 147 77 3 81 217 39 178 6.14e-21 90.9
Msa0886880 MtrunA17_Chr6g0455361 26.444 450 271 21 68 494 34 446 2.01e-20 94.0
Msa0886880 MtrunA17_Chr2g0323511 25.052 483 308 17 39 490 8 467 4.62e-19 90.1
Msa0886880 MtrunA17_Chr7g0224391 25.979 485 281 22 43 507 11 437 1.07e-18 88.6
Msa0886880 MtrunA17_Chr4g0053071 39.310 145 80 5 365 505 3 143 1.22e-18 82.8
Msa0886880 MtrunA17_Chr6g0463321 29.282 181 93 4 296 475 38 184 1.23e-18 84.0
Msa0886880 MtrunA17_Chr6g0463331 40.870 115 62 2 110 218 45 159 3.83e-18 82.0
Msa0886880 MtrunA17_Chr6g0454761 25.910 467 296 20 47 494 8 443 6.95e-18 87.4
Msa0886880 MtrunA17_Chr7g0219181 24.390 492 295 18 46 494 7 464 3.98e-17 84.0
Msa0886880 MtrunA17_Chr4g0053051 41.284 109 62 2 400 507 23 130 8.53e-17 77.0
Msa0886880 MtrunA17_Chr8g0353891 32.948 173 109 4 67 232 26 198 1.16e-16 79.0
Msa0886880 MtrunA17_Chr3g0134131 32.680 153 93 3 311 455 131 281 1.21e-16 80.9
Msa0886880 MtrunA17_Chr3g0087901 24.582 419 255 17 68 457 31 417 2.02e-15 78.6
Msa0886880 MtrunA17_Chr2g0306321 24.107 448 272 23 77 499 51 455 2.68e-15 78.2
Msa0886880 MtrunA17_Chr7g0252731 25.501 349 220 12 35 376 5 320 2.69e-14 75.1
Msa0886880 MtrunA17_Chr6g0455351 26.524 328 196 13 68 376 34 335 3.52e-14 74.7
Msa0886880 MtrunA17_Chr3g0097841 24.880 209 139 4 297 490 26 231 1.61e-12 67.8
Msa0886880 MtrunA17_Chr7g0224101 30.833 120 80 1 269 388 16 132 3.25e-12 64.3
Msa0886880 MtrunA17_Chr4g0004701 28.646 192 107 6 325 494 48 231 5.61e-12 65.9
Msa0886880 MtrunA17_Chr7g0219211 25.359 209 120 5 46 232 8 202 6.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0886880 AT5G23940.1 62.658 474 139 6 45 505 1 449 0.0 599
Msa0886880 AT2G39980.1 31.373 510 265 9 46 507 7 479 2.01e-75 246
Msa0886880 AT5G01210.1 32.406 503 264 7 44 507 3 468 1.14e-73 241
Msa0886880 AT5G42830.1 33.843 458 260 13 57 504 21 445 1.89e-65 219
Msa0886880 AT5G07860.1 30.561 481 268 12 47 504 8 445 1.56e-59 203
Msa0886880 AT5G07870.1 30.882 476 285 9 47 504 8 457 1.66e-59 203
Msa0886880 AT5G67150.1 31.078 473 282 11 47 507 5 445 6.36e-59 201
Msa0886880 AT3G50270.1 29.400 483 278 12 47 507 6 447 4.36e-57 197
Msa0886880 AT3G50280.1 30.290 482 268 16 46 504 3 439 4.62e-57 196
Msa0886880 AT5G07850.1 31.106 479 278 17 47 507 8 452 6.34e-55 191
Msa0886880 AT3G50300.1 28.542 480 289 12 46 507 3 446 2.00e-50 179
Msa0886880 AT5G67160.1 29.661 472 264 16 49 503 7 427 6.21e-45 164
Msa0886880 AT3G50280.2 31.054 351 186 11 167 504 2 309 1.99e-43 156
Msa0886880 AT5G38130.1 26.782 463 287 11 41 489 18 442 7.98e-42 155
Msa0886880 AT5G48930.1 25.424 472 304 17 45 507 1 433 2.18e-33 132
Msa0886880 AT2G19070.1 27.273 473 274 16 52 494 8 440 1.27e-31 127
Msa0886880 AT3G50290.1 27.362 307 173 7 160 454 1 269 1.02e-28 115
Msa0886880 AT5G41040.1 26.369 493 304 15 15 494 1 447 8.89e-27 113
Msa0886880 AT5G41040.2 26.998 463 279 15 45 494 15 431 5.44e-26 110
Msa0886880 AT5G63560.1 27.295 414 238 14 93 494 55 417 1.42e-24 106
Msa0886880 AT5G57840.1 25.902 471 272 18 45 487 1 422 1.83e-23 103
Msa0886880 AT3G48720.1 26.540 422 245 16 93 499 55 426 9.20e-23 101
Msa0886880 AT3G29635.1 27.791 421 254 17 68 467 29 420 7.38e-22 98.6
Msa0886880 AT1G03940.1 26.230 488 276 24 48 494 9 453 1.48e-21 97.8
Msa0886880 AT5G39080.1 25.376 465 273 16 68 497 28 453 1.26e-18 89.0
Msa0886880 AT1G03495.1 28.000 350 188 18 57 376 19 334 2.41e-17 84.0
Msa0886880 AT5G61160.1 23.058 399 270 11 71 456 28 402 7.08e-17 83.6
Msa0886880 AT5G07080.1 22.727 462 320 11 34 487 1 433 8.42e-16 80.1
Msa0886880 AT5G39090.1 25.055 451 278 18 68 497 28 439 1.08e-14 76.6
Msa0886880 AT1G03390.1 24.747 396 241 18 77 456 52 406 1.48e-14 76.3
Msa0886880 AT5G39050.1 24.926 337 202 9 151 459 109 422 8.23e-14 73.9
Msa0886880 AT3G47170.1 24.340 341 210 14 102 425 73 382 1.68e-12 70.1
Msa0886880 AT1G28680.1 24.172 302 189 9 173 470 135 400 4.06e-12 68.6
Msa0886880 AT1G28680.2 25.108 231 141 6 173 402 135 334 5.85e-12 67.8

Find 148 sgRNAs with CRISPR-Local

Find 717 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGATGGTGGTGGGCCTT+TGG 0.162802 6_1:-47294223 None:intergenic
ATTTGTGCAATAAGAGAATT+TGG 0.179714 6_1:+47295017 Msa0886880:three_prime_UTR
TGGAAGTTCACCTAGGTTTA+AGG 0.194532 6_1:+47294791 Msa0886880:CDS
CACACGTGTGTTTCGGGCCT+TGG 0.203708 6_1:-47294175 None:intergenic
TCACCATTGGCTGATGGTGC+TGG 0.226535 6_1:-47294276 None:intergenic
TTATAGTGGAATCTTGAATT+TGG 0.232801 6_1:+47286964 Msa0886880:CDS
GTGTTGTTGGCATGCATTTA+TGG 0.234731 6_1:-47286460 None:intergenic
CATCAACTAGCTGGTAAATT+AGG 0.237092 6_1:+47286800 Msa0886880:CDS
AGGCTCTCTCCACTCATATT+TGG 0.242867 6_1:+47294463 Msa0886880:CDS
CATGGCCTTCAATTACCTTT+TGG 0.245260 6_1:-47294677 None:intergenic
GCTGATGGTGGTGGGCCTTT+GGG 0.245655 6_1:-47294222 None:intergenic
AGTTAATATTATCTTAATAA+TGG 0.257779 6_1:+47295222 Msa0886880:three_prime_UTR
TAGACCCTTGTTGGCTGTTC+AGG 0.257806 6_1:+47286997 Msa0886880:CDS
TCTCTTATTGCACAAATTCT+TGG 0.259588 6_1:-47295011 None:intergenic
AAGGTTTATGACATTGATTT+TGG 0.269945 6_1:+47294810 Msa0886880:CDS
GCAAGATAAGGAATTTCTTA+TGG 0.279006 6_1:+47294971 Msa0886880:CDS
CAAGCTTCACACGTGTGTTT+CGG 0.288866 6_1:-47294182 None:intergenic
TTGAACTTGGTAATAATGTT+TGG 0.293294 6_1:+47295178 Msa0886880:three_prime_UTR
CACAACAGCCCAACCATTCT+TGG 0.294816 6_1:+47294146 Msa0886880:CDS
TGGTGGTGGGCCTTTGGGCT+CGG 0.305788 6_1:-47294217 None:intergenic
AAAACCATTCTCAACTTTCC+AGG 0.318337 6_1:+47294443 Msa0886880:CDS
AGGAATCAATTCCTTCAAAA+TGG 0.325774 6_1:-47286942 None:intergenic
AAGCTTCACACGTGTGTTTC+GGG 0.326495 6_1:-47294181 None:intergenic
ATATTCACCGTCACGGCTGC+TGG 0.327578 6_1:+47294612 Msa0886880:CDS
CGGTGAATATAGCTTGAATT+AGG 0.328962 6_1:-47294599 None:intergenic
TTTAACCATGCTGTCCTTGA+TGG 0.331947 6_1:+47294066 Msa0886880:CDS
TGAACTTGGTAATAATGTTT+GGG 0.347157 6_1:+47295179 Msa0886880:three_prime_UTR
CATCCCATCAAATTTGTTGT+TGG 0.353936 6_1:-47294865 None:intergenic
AAATTCAAGATTCCACTATA+AGG 0.356072 6_1:-47286962 None:intergenic
GCATGCATTTATGGAATTCA+TGG 0.356174 6_1:-47286451 None:intergenic
GCCTTGGTTCTTTCCAAGAA+TGG 0.370836 6_1:-47294159 None:intergenic
AAGGAATTGATTCCTTATAG+TGG 0.380758 6_1:+47286950 Msa0886880:CDS
GTGAACACTGTGTAGTCTTC+GGG 0.385741 6_1:-47294516 None:intergenic
GGTTCTTTCCAAGAATGGTT+GGG 0.392557 6_1:-47294154 None:intergenic
AACATTGGAGCCTGAGGCTA+TGG 0.403215 6_1:+47294938 Msa0886880:CDS
CACCATTGGCTGATGGTGCT+GGG 0.403622 6_1:-47294275 None:intergenic
GGTGGTGGGCCTTTGGGCTC+GGG 0.405627 6_1:-47294216 None:intergenic
GTTCCACTTCTCACAATCTC+TGG 0.407858 6_1:-47294843 None:intergenic
CGTGGCACTTCATGACTTCA+TGG 0.418816 6_1:+47294097 Msa0886880:CDS
GCGGCTCACCCGCCACAATT+CGG 0.419308 6_1:+47294642 Msa0886880:CDS
AACCGTCCGATGGAAGGGTT+TGG 0.420668 6_1:-47294419 None:intergenic
TTGATATAATGTTGTGTGTT+GGG 0.425059 6_1:+47295121 Msa0886880:three_prime_UTR
CCAAAGTATGCCTCCGGCAT+TGG 0.425225 6_1:-47294573 None:intergenic
TTCTTATAGAAAAGTGTTGT+TGG 0.427915 6_1:-47286473 None:intergenic
GGAACCAACAACAAATTTGA+TGG 0.429115 6_1:+47294861 Msa0886880:CDS
CATCAATAGCTTTAGCATCA+TGG 0.431488 6_1:-47294695 None:intergenic
TGGTTCTTTCCAAGAATGGT+TGG 0.433192 6_1:-47294155 None:intergenic
TTCATCCTTTACCTCACCAT+TGG 0.433287 6_1:-47294244 None:intergenic
CAGCTAACAAAGCTTAAAGA+TGG 0.433635 6_1:+47294024 Msa0886880:intron
CTTTGGGCTCGGGTAGGGAG+AGG 0.433813 6_1:-47294206 None:intergenic
TGGGCCTTTGGGCTCGGGTA+GGG 0.433931 6_1:-47294211 None:intergenic
CTCCTCCCTCCACTCTTGCC+TGG 0.434809 6_1:-47294900 None:intergenic
TTGATCCAAAAGGTAATTGA+AGG 0.436135 6_1:+47294672 Msa0886880:CDS
GTGAGGCAAGGCCCATACTT+AGG 0.436505 6_1:+47294340 Msa0886880:CDS
TTCTATGTTTAGATTGTTGA+AGG 0.440887 6_1:+47295043 Msa0886880:three_prime_UTR
CGGCGCTTCTTTGATCCAAA+AGG 0.441589 6_1:+47294662 Msa0886880:CDS
TTCAACCTTTGCCTCACCAT+TGG 0.443928 6_1:-47294289 None:intergenic
GGGATGATTTATTTGTATCC+AGG 0.445149 6_1:+47294882 Msa0886880:CDS
TCACCATTGGCTGATGGTGG+TGG 0.446093 6_1:-47294231 None:intergenic
TGTGAACACTGTGTAGTCTT+CGG 0.453755 6_1:-47294517 None:intergenic
GTGGGCCTTTGGGCTCGGGT+AGG 0.453995 6_1:-47294212 None:intergenic
CTTGCCTCACCTTTGACTGA+TGG 0.456250 6_1:-47294327 None:intergenic
AAATATGAGTGGAGAGAGCC+TGG 0.462148 6_1:-47294461 None:intergenic
GCCTCACCTTTGACTGATGG+TGG 0.464493 6_1:-47294324 None:intergenic
CCAATGCCGGAGGCATACTT+TGG 0.465281 6_1:+47294573 Msa0886880:CDS
CTCACCTTTGACTGATGGTG+GGG 0.466633 6_1:-47294322 None:intergenic
CTTAAAGATGGGCTAGCAAT+GGG 0.473029 6_1:+47294036 Msa0886880:CDS
AAGGAGTTTCATCAACTAGC+TGG 0.476215 6_1:+47286791 Msa0886880:CDS
GAATGGTTGGGCTGTTGTGA+TGG 0.476607 6_1:-47294142 None:intergenic
GAAGCTGTTGCTGATGAGAT+TGG 0.480686 6_1:+47286887 Msa0886880:CDS
CCTCACCTTTGACTGATGGT+GGG 0.484738 6_1:-47294323 None:intergenic
TGAGGCAAGGCCCATACTTA+GGG 0.488757 6_1:+47294341 Msa0886880:CDS
GCCTGAGGCTATGGGAAGGT+TGG 0.493581 6_1:+47294947 Msa0886880:CDS
AAGTATGCCTCCGGCATTGG+CGG 0.496346 6_1:-47294570 None:intergenic
CACCATTGGCTGATGGTGGT+GGG 0.500291 6_1:-47294230 None:intergenic
GAGGTAAAGGATGAACAAAA+TGG 0.503698 6_1:+47294252 Msa0886880:CDS
ATCAGCCAATGGTGAGGTAA+AGG 0.506207 6_1:+47294239 Msa0886880:CDS
AGATGGGCTAGCAATGGGCT+TGG 0.506336 6_1:+47294041 Msa0886880:CDS
TTTACCTCACCATTGGCTGA+TGG 0.510865 6_1:-47294237 None:intergenic
ACGAGTGAACCCGCCAATGC+CGG 0.512362 6_1:+47294560 Msa0886880:CDS
TTTGCCTCACCATTGGCTGA+TGG 0.513475 6_1:-47294282 None:intergenic
TCCAACCTTCCCATAGCCTC+AGG 0.514780 6_1:-47294948 None:intergenic
AGTGGAATCTTGAATTTGGA+AGG 0.516771 6_1:+47286968 Msa0886880:CDS
CATTGATGTTGAATTAACAT+TGG 0.517058 6_1:+47294923 Msa0886880:CDS
GCTTTGATTGAATTTGAACT+TGG 0.517937 6_1:+47295165 Msa0886880:three_prime_UTR
TATTCACCGTCACGGCTGCT+GGG 0.518357 6_1:+47294613 Msa0886880:CDS
AGGTTTCCAAAGTATGCCTC+CGG 0.518580 6_1:-47294579 None:intergenic
GCTTAAAGATGGGCTAGCAA+TGG 0.522409 6_1:+47294035 Msa0886880:CDS
ATGTCATAAACCTTAAACCT+AGG 0.527449 6_1:-47294801 None:intergenic
TTTGATATAATGTTGTGTGT+TGG 0.531835 6_1:+47295120 Msa0886880:three_prime_UTR
GGGAAGGTTGGAGCAAGATA+AGG 0.542296 6_1:+47294959 Msa0886880:CDS
AGTATGCCTCCGGCATTGGC+GGG 0.543737 6_1:-47294569 None:intergenic
AGAGCCTGGAAAGTTGAGAA+TGG 0.544987 6_1:-47294447 None:intergenic
GGTGTGAATTGTGTTGCAGT+TGG 0.547554 6_1:+47294771 Msa0886880:CDS
AAGAAGCGCCGAATTGTGGC+GGG 0.553972 6_1:-47294650 None:intergenic
ACCTCACCATTGGCTGATGG+TGG 0.554117 6_1:-47294234 None:intergenic
AGCTAACAAAGCTTAAAGAT+GGG 0.555121 6_1:+47294025 Msa0886880:intron
AATGGTTGGGCTGTTGTGAT+GGG 0.555391 6_1:-47294141 None:intergenic
ATCAAAGAAGCGCCGAATTG+TGG 0.558770 6_1:-47294654 None:intergenic
TGTATCCAGGCAAGAGTGGA+GGG 0.559507 6_1:+47294895 Msa0886880:CDS
GAATATGATGATGACTTGGT+TGG 0.560722 6_1:+47286851 Msa0886880:CDS
CAAAAGCCCAGCAGCCGTGA+CGG 0.561878 6_1:-47294619 None:intergenic
TGTTGAATATGATGATGACT+TGG 0.566299 6_1:+47286847 Msa0886880:CDS
ATTTATGGAATTCATGGAAG+CGG 0.566499 6_1:-47286445 None:intergenic
TCACCTTTGACTGATGGTGG+GGG 0.566819 6_1:-47294321 None:intergenic
GGGTCCACCACTACATATCT+CGG 0.567523 6_1:-47294121 None:intergenic
AAGCCAGAGATTGTGAGAAG+TGG 0.568369 6_1:+47294840 Msa0886880:CDS
TTGATGAACGTAACAAAGAG+TGG 0.570116 6_1:+47294712 Msa0886880:CDS
GTGGCACTTCATGACTTCAT+GGG 0.571085 6_1:+47294098 Msa0886880:CDS
ATCAGCCAATGGTGAGGCAA+AGG 0.577906 6_1:+47294284 Msa0886880:CDS
TTGTATCCAGGCAAGAGTGG+AGG 0.579701 6_1:+47294894 Msa0886880:CDS
TAAATTAGGTAAAGATGAAG+AGG 0.579860 6_1:+47286814 Msa0886880:CDS
AGGCATGCATAGACCCTTGT+TGG 0.581452 6_1:+47286988 Msa0886880:CDS
GAACCAACAACAAATTTGAT+GGG 0.585695 6_1:+47294862 Msa0886880:CDS
TCTATGTTTAGATTGTTGAA+GGG 0.586256 6_1:+47295044 Msa0886880:three_prime_UTR
AATTACCTGAACAGCCAACA+AGG 0.594893 6_1:-47287002 None:intergenic
AAAGAAGCGCCGAATTGTGG+CGG 0.595569 6_1:-47294651 None:intergenic
TTGCAGTTGGAAGTTCACCT+AGG 0.596541 6_1:+47294784 Msa0886880:CDS
CTCTCCCTACCCGAGCCCAA+AGG 0.598539 6_1:+47294207 Msa0886880:CDS
GTTCACGTGCAAGGCTCACG+TGG 0.602181 6_1:-47294488 None:intergenic
ACATTGGAGCCTGAGGCTAT+GGG 0.602218 6_1:+47294939 Msa0886880:CDS
TGATGAACGTAACAAAGAGT+GGG 0.610084 6_1:+47294713 Msa0886880:CDS
AACCAAACCCTTCCATCGGA+CGG 0.613822 6_1:+47294417 Msa0886880:CDS
AGCACCATCAGCCAATGGTG+AGG 0.618064 6_1:+47294278 Msa0886880:CDS
GCCACGTGGATGTTCCATCA+AGG 0.620237 6_1:-47294080 None:intergenic
AGTGAACCCGCCAATGCCGG+AGG 0.623348 6_1:+47294563 Msa0886880:CDS
TGAATTAACATTGGAGCCTG+AGG 0.623430 6_1:+47294932 Msa0886880:CDS
GGCCCACCACCATCAGCCAA+TGG 0.628685 6_1:+47294228 Msa0886880:CDS
GGCCCAGCACCATCAGCCAA+TGG 0.630831 6_1:+47294273 Msa0886880:CDS
CATCAGTCAAAGGTGAGGCA+AGG 0.631349 6_1:+47294328 Msa0886880:CDS
CACGTGGCGCCAAATATGAG+TGG 0.636105 6_1:-47294472 None:intergenic
TATTTGTATCCAGGCAAGAG+TGG 0.639070 6_1:+47294891 Msa0886880:CDS
ACCATTCTTGGAAAGAACCA+AGG 0.640231 6_1:+47294158 Msa0886880:CDS
AGTCAACCAAACCCTTCCAT+CGG 0.647784 6_1:+47294413 Msa0886880:CDS
TCAAGCTATATTCACCGTCA+CGG 0.648331 6_1:+47294605 Msa0886880:CDS
AAATTAGGTAAAGATGAAGA+GGG 0.651013 6_1:+47286815 Msa0886880:CDS
ATGTTCCATCAAGGACAGCA+TGG 0.653199 6_1:-47294071 None:intergenic
TCATGGGCCGAGATATGTAG+TGG 0.655151 6_1:+47294114 Msa0886880:CDS
CAAAAGCTATGTGAAACCTG+AGG 0.658022 6_1:+47286622 Msa0886880:CDS
GAGGCAAAGGTTGAACCCGA+AGG 0.658181 6_1:+47294297 Msa0886880:CDS
ACCACCATCAGCCAATGGTG+AGG 0.663027 6_1:+47294233 Msa0886880:CDS
CCCACCATCAGTCAAAGGTG+AGG 0.665634 6_1:+47294323 Msa0886880:CDS
TGGGCCGAGATATGTAGTGG+TGG 0.675783 6_1:+47294117 Msa0886880:CDS
TGGAGCCTGAGGCTATGGGA+AGG 0.683457 6_1:+47294943 Msa0886880:CDS
ATTACCTGAACAGCCAACAA+GGG 0.693693 6_1:-47287001 None:intergenic
ATCCAGGCAAGAGTGGAGGG+AGG 0.695098 6_1:+47294898 Msa0886880:CDS
TGAAGTCATGAAGTGCCACG+TGG 0.764930 6_1:-47294094 None:intergenic
TCCTTGATGGAACATCCACG+TGG 0.766828 6_1:+47294079 Msa0886880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTGTAAAAAATTAATTTT+TGG - chr6_1:47286715-47286734 None:intergenic 10.0%
!!! CAAAAATTAATTTTTTACAA+AGG + chr6_1:47286713-47286732 Msa0886880:CDS 10.0%
!! AAATTTAATCAATTTAGAAA+TGG - chr6_1:47287085-47287104 None:intergenic 10.0%
!!! AGTATATTTTAATTTAGAAA+TGG - chr6_1:47287146-47287165 None:intergenic 10.0%
!! ATTTATTGATATTCTATTAT+TGG - chr6_1:47287688-47287707 None:intergenic 10.0%
!! ATAATAGAATATCAATAAAT+AGG + chr6_1:47287688-47287707 Msa0886880:intron 10.0%
!!! CTTTTGTTTATATTTTATTT+TGG + chr6_1:47288053-47288072 Msa0886880:intron 10.0%
!!! GGAATTTAAAATTTATTTTT+TGG - chr6_1:47289258-47289277 None:intergenic 10.0%
!!! ATTTTTAAAAGATTTTTTTG+GGG - chr6_1:47290811-47290830 None:intergenic 10.0%
!!! CTATTTTTAAAAGATTTTTT+TGG - chr6_1:47290813-47290832 None:intergenic 10.0%
!! TGATACTTAATTAAAAAAAA+AGG + chr6_1:47293579-47293598 Msa0886880:intron 10.0%
!!! TTATCTTGTTTTTAAATATT+CGG - chr6_1:47293883-47293902 None:intergenic 10.0%
!! AGTTAATATTATCTTAATAA+TGG + chr6_1:47295222-47295241 Msa0886880:three_prime_UTR 10.0%
!!! AAATTTTAAGAAGTTTTTCT+TGG - chr6_1:47286538-47286557 None:intergenic 15.0%
!!! AAATTAATTTTTTACAAAGG+AGG + chr6_1:47286716-47286735 Msa0886880:CDS 15.0%
!! CTAAATTAAAATATACTACT+AGG + chr6_1:47287149-47287168 Msa0886880:intron 15.0%
!! TTACATTTATAGTTAATATG+TGG + chr6_1:47287386-47287405 Msa0886880:intron 15.0%
!! TACATTTATAGTTAATATGT+GGG + chr6_1:47287387-47287406 Msa0886880:intron 15.0%
!! TAATGTAAAAAAGAGTAATT+TGG - chr6_1:47287840-47287859 None:intergenic 15.0%
!! TTTACATTATATTTACCTTA+AGG + chr6_1:47287851-47287870 Msa0886880:intron 15.0%
!!! TTGTTTATATTTTATTTTGG+AGG + chr6_1:47288056-47288075 Msa0886880:intron 15.0%
!!! TTTTAATTTTTTAAGTGATG+TGG - chr6_1:47288342-47288361 None:intergenic 15.0%
!!! TGTTTTTTCTTTTAATTAAG+AGG - chr6_1:47288417-47288436 None:intergenic 15.0%
!! TCTTAATTAAAAGAAAAAAC+AGG + chr6_1:47288416-47288435 Msa0886880:intron 15.0%
!! AAAAAAAAGTTAGAATGAAA+AGG + chr6_1:47288821-47288840 Msa0886880:intron 15.0%
!!! TTTATCTTATCCTTTTTTAT+TGG - chr6_1:47289325-47289344 None:intergenic 15.0%
!! TGCAAAAAAAAATAAACAAA+TGG - chr6_1:47289462-47289481 None:intergenic 15.0%
!!! AATAATAAATTCTTGTCTTT+TGG - chr6_1:47290934-47290953 None:intergenic 15.0%
!!! TTTAATTTGGTTAATGTTAA+TGG - chr6_1:47292155-47292174 None:intergenic 15.0%
!!! ATTAGTTTAATCATAATCAA+CGG - chr6_1:47293430-47293449 None:intergenic 15.0%
!!! AATTATTTTAACCATTTCTT+AGG - chr6_1:47293458-47293477 None:intergenic 15.0%
!!! AAAAAGGTATAATTTATAAG+AGG + chr6_1:47293595-47293614 Msa0886880:intron 15.0%
!!! TATAATTTATAAGAGGATTT+TGG + chr6_1:47293602-47293621 Msa0886880:intron 15.0%
!!! TATTTTTGGAAGTTATATAT+GGG - chr6_1:47293652-47293671 None:intergenic 15.0%
!!! TTATTTTTGGAAGTTATATA+TGG - chr6_1:47293653-47293672 None:intergenic 15.0%
!! TCAAAAATATTATGATGTTT+AGG + chr6_1:47295093-47295112 Msa0886880:three_prime_UTR 15.0%
!!! AATTATATTTTTAAAGAAGG+TGG - chr6_1:47295251-47295270 None:intergenic 15.0%
!! TTAAATCAAAACCTAAATGT+AGG - chr6_1:47287180-47287199 None:intergenic 20.0%
!!! TATTTAAAATCATAGCCTAA+AGG + chr6_1:47287297-47287316 Msa0886880:intron 20.0%
!!! ATTTAAAATCATAGCCTAAA+GGG + chr6_1:47287298-47287317 Msa0886880:intron 20.0%
!! TTTATATAGTATTTGGCATT+TGG - chr6_1:47287504-47287523 None:intergenic 20.0%
!! AACCACATTTATATAGTATT+TGG - chr6_1:47287511-47287530 None:intergenic 20.0%
!! TATTTGTGGAAGTTATATAT+GGG - chr6_1:47287610-47287629 None:intergenic 20.0%
!! ATATTTGTGGAAGTTATATA+TGG - chr6_1:47287611-47287630 None:intergenic 20.0%
!! ATATTCTATTATTGGCAAAT+AGG - chr6_1:47287680-47287699 None:intergenic 20.0%
!! AGTTGAAAAATCAATGTATA+TGG - chr6_1:47288029-47288048 None:intergenic 20.0%
!!! TTTATATTTTATTTTGGAGG+AGG + chr6_1:47288059-47288078 Msa0886880:intron 20.0%
!! AGGTATTATTTAAACTCAAA+TGG + chr6_1:47288079-47288098 Msa0886880:intron 20.0%
!! AAAAAAAACTTTCTACAAAC+CGG + chr6_1:47288359-47288378 Msa0886880:intron 20.0%
!!! TTTTCTTTTAATTAAGAGGA+TGG - chr6_1:47288413-47288432 None:intergenic 20.0%
!! TAAATCTCAACCAATAAAAA+AGG + chr6_1:47289312-47289331 Msa0886880:intron 20.0%
!! TGAAGAAAATTAAATTCACT+AGG - chr6_1:47289418-47289437 None:intergenic 20.0%
!!! TTAGTTACTGTTATTTTGAT+TGG - chr6_1:47289661-47289680 None:intergenic 20.0%
!!! ATTCAACTAAACTTTGTTTT+TGG - chr6_1:47290999-47291018 None:intergenic 20.0%
!!! TAGACGGAATAATTTTAATT+TGG - chr6_1:47292168-47292187 None:intergenic 20.0%
!! AATTAAAATTATTCCGTCTA+TGG + chr6_1:47292168-47292187 Msa0886880:intron 20.0%
!!! GAAAACTCTAAATTTTTTCA+TGG - chr6_1:47292209-47292228 None:intergenic 20.0%
!! ATAATTCTTTGATTGATGTT+TGG - chr6_1:47293069-47293088 None:intergenic 20.0%
!!! AAAGTGAATCTCTTTATTTT+TGG - chr6_1:47293666-47293685 None:intergenic 20.0%
!! TAAATCATACAAATAAGGAA+AGG - chr6_1:47293978-47293997 None:intergenic 20.0%
!! AGTCATAAATCATACAAATA+AGG - chr6_1:47293983-47294002 None:intergenic 20.0%
!! TCTTTGAATTGAAAAATCTT+GGG - chr6_1:47294747-47294766 None:intergenic 20.0%
!! ATCTTTGAATTGAAAAATCT+TGG - chr6_1:47294748-47294767 None:intergenic 20.0%
!!! TTCTTATAGAAAAGTGTTGT+TGG - chr6_1:47286476-47286495 None:intergenic 25.0%
! TTGTAGTAAAAAGCTAAGTA+AGG - chr6_1:47286692-47286711 None:intergenic 25.0%
! AATGTTGAGAAACTCAAAAA+TGG + chr6_1:47286752-47286771 Msa0886880:CDS 25.0%
! ATGTTGAGAAACTCAAAAAT+GGG + chr6_1:47286753-47286772 Msa0886880:CDS 25.0%
! TAAATTAGGTAAAGATGAAG+AGG + chr6_1:47286814-47286833 Msa0886880:CDS 25.0%
! AAATTAGGTAAAGATGAAGA+GGG + chr6_1:47286815-47286834 Msa0886880:CDS 25.0%
! AAATTCAAGATTCCACTATA+AGG - chr6_1:47286965-47286984 None:intergenic 25.0%
!! TTATAGTGGAATCTTGAATT+TGG + chr6_1:47286964-47286983 Msa0886880:CDS 25.0%
!! TATGAGGCTAATAATTCTTT+TGG - chr6_1:47287438-47287457 None:intergenic 25.0%
! TGCCAAATACTATATAAATG+TGG + chr6_1:47287506-47287525 Msa0886880:intron 25.0%
! CTATATAAATGTGGTTGTTA+AGG + chr6_1:47287515-47287534 Msa0886880:intron 25.0%
! AGATTGAAAACCAAAAAACA+AGG + chr6_1:47287552-47287571 Msa0886880:intron 25.0%
! GATTGAAAACCAAAAAACAA+GGG + chr6_1:47287553-47287572 Msa0886880:intron 25.0%
!!! TAAATGTATCCCTTGTTTTT+TGG - chr6_1:47287565-47287584 None:intergenic 25.0%
! ATAGCAAATCTCTATATTTG+TGG - chr6_1:47287624-47287643 None:intergenic 25.0%
! TAAAAATCAAAACAAGACAC+AGG - chr6_1:47287652-47287671 None:intergenic 25.0%
!! TTCTACTCTAATTGTTACTT+CGG - chr6_1:47287792-47287811 None:intergenic 25.0%
! TACAAAAACTAGATACCTTA+AGG - chr6_1:47287869-47287888 None:intergenic 25.0%
! TTATTTAAACTCAAATGGCT+TGG + chr6_1:47288084-47288103 Msa0886880:intron 25.0%
! TGATTTCCAATATAACTGAA+TGG + chr6_1:47288448-47288467 Msa0886880:intron 25.0%
! GATTTCCAATATAACTGAAT+GGG + chr6_1:47288449-47288468 Msa0886880:intron 25.0%
! TGAATAATATATCCCTTCTT+TGG - chr6_1:47288641-47288660 None:intergenic 25.0%
! CATGTAATCTTCAAAAACAT+TGG + chr6_1:47288668-47288687 Msa0886880:intron 25.0%
!! AATTTTACAGATGTAGATGA+TGG - chr6_1:47288782-47288801 None:intergenic 25.0%
! AAGGATTGCTCAATAAAAAT+TGG - chr6_1:47288848-47288867 None:intergenic 25.0%
!! TTTTATTGAGCAATCCTTTA+AGG + chr6_1:47288850-47288869 Msa0886880:intron 25.0%
! ACTTTCTTAATAAGTGCAAT+TGG - chr6_1:47289014-47289033 None:intergenic 25.0%
! AATTGCACTTATTAAGAAAG+TGG + chr6_1:47289013-47289032 Msa0886880:intron 25.0%
! ATTGCACTTATTAAGAAAGT+GGG + chr6_1:47289014-47289033 Msa0886880:intron 25.0%
! TTAGACACTTTCTCATTTAT+TGG - chr6_1:47289049-47289068 None:intergenic 25.0%
! CATTAAATACCTTACAGTAA+TGG + chr6_1:47289205-47289224 Msa0886880:intron 25.0%
! ATTAAACAACCATTACTGTA+AGG - chr6_1:47289217-47289236 None:intergenic 25.0%
! ATTAAATTCACTAGGTAGAT+TGG - chr6_1:47289410-47289429 None:intergenic 25.0%
!!! GTAATTCGTATTTTTGGTTT+TGG - chr6_1:47289603-47289622 None:intergenic 25.0%
!! GAACTTGTAATTCGTATTTT+TGG - chr6_1:47289609-47289628 None:intergenic 25.0%
! ATTCTTATCTTACAGGTATA+TGG - chr6_1:47289817-47289836 None:intergenic 25.0%
! TTATCATCATTTCTGCTTTA+TGG - chr6_1:47289861-47289880 None:intergenic 25.0%
! GTGGTAAATCTATTATGTTA+TGG - chr6_1:47289943-47289962 None:intergenic 25.0%
!! AATAATCCTTTATGTGCTTT+TGG - chr6_1:47290007-47290026 None:intergenic 25.0%
!!! GAGTTTAATTTGTCTTTGTT+GGG - chr6_1:47290694-47290713 None:intergenic 25.0%
!!! AGAGTTTAATTTGTCTTTGT+TGG - chr6_1:47290695-47290714 None:intergenic 25.0%
! AAAAATAGCTTGGGTTAAAT+GGG - chr6_1:47290770-47290789 None:intergenic 25.0%
!!! TTAAAAGATTTTTTTGGGGT+GGG - chr6_1:47290807-47290826 None:intergenic 25.0%
!!! TTTAAAAGATTTTTTTGGGG+TGG - chr6_1:47290808-47290827 None:intergenic 25.0%
!! AATAAATTCTTGTCTTTTGG+TGG - chr6_1:47290931-47290950 None:intergenic 25.0%
!!! TAAACTTTGTTTTTGGAAAC+CGG - chr6_1:47290992-47291011 None:intergenic 25.0%
! GTGTTAATGTAAATGATTCT+TGG - chr6_1:47291101-47291120 None:intergenic 25.0%
!! TTTCATAAAAGTATGCTTAC+TGG - chr6_1:47291123-47291142 None:intergenic 25.0%
!! TGGCTTCATTAAACAATTTT+GGG - chr6_1:47291904-47291923 None:intergenic 25.0%
!! TTGGCTTCATTAAACAATTT+TGG - chr6_1:47291905-47291924 None:intergenic 25.0%
!! TTTAACAAAACCATTTTCTG+TGG - chr6_1:47291994-47292013 None:intergenic 25.0%
!! TTCTTTTCGTAAGTTATCTT+TGG - chr6_1:47292030-47292049 None:intergenic 25.0%
!! CATTTTATTCTTTGATTCCA+AGG - chr6_1:47292366-47292385 None:intergenic 25.0%
! TCATCAACCATTAAAAACAA+CGG + chr6_1:47292605-47292624 Msa0886880:intron 25.0%
!! TTGATTGATTTACCTATTTG+TGG - chr6_1:47292767-47292786 None:intergenic 25.0%
!!! ATTTTAACTCTATTCGGTAT+GGG - chr6_1:47292868-47292887 None:intergenic 25.0%
!! TAATGTGATAAAAGCTTTGT+GGG - chr6_1:47293161-47293180 None:intergenic 25.0%
! ATAATGTGATAAAAGCTTTG+TGG - chr6_1:47293162-47293181 None:intergenic 25.0%
! AAATGACATTATAATGTGAG+GGG - chr6_1:47293286-47293305 None:intergenic 25.0%
! CAAATGACATTATAATGTGA+GGG - chr6_1:47293287-47293306 None:intergenic 25.0%
! ACAAATGACATTATAATGTG+AGG - chr6_1:47293288-47293307 None:intergenic 25.0%
!!! TAATTGTGTCGTTTTGTTTT+CGG + chr6_1:47293473-47293492 Msa0886880:intron 25.0%
! AAATAACAAAAAGAGGACAT+AGG - chr6_1:47293694-47293713 None:intergenic 25.0%
! GGTCAAAAAATAACAAAAAG+AGG - chr6_1:47293701-47293720 None:intergenic 25.0%
!!! GTCTTATTTCATGACATTAT+TGG - chr6_1:47293722-47293741 None:intergenic 25.0%
! ATGTCATGAAATAAGACAAA+TGG + chr6_1:47293725-47293744 Msa0886880:intron 25.0%
! TAAATACACCAATGGTAATT+TGG - chr6_1:47293827-47293846 None:intergenic 25.0%
!!! CCATTTTTTAAATACACCAA+TGG - chr6_1:47293835-47293854 None:intergenic 25.0%
! CCATTGGTGTATTTAAAAAA+TGG + chr6_1:47293832-47293851 Msa0886880:intron 25.0%
! TGTAAATATGACATGTGAAA+GGG - chr6_1:47293944-47293963 None:intergenic 25.0%
! ATGTAAATATGACATGTGAA+AGG - chr6_1:47293945-47293964 None:intergenic 25.0%
!!! AAGATTTTTTCCCTAAGTAT+GGG - chr6_1:47294354-47294373 None:intergenic 25.0%
!!! ATTTTTCAATTCAAAGATGC+TGG + chr6_1:47294750-47294769 Msa0886880:CDS 25.0%
!!! AAGGTTTATGACATTGATTT+TGG + chr6_1:47294810-47294829 Msa0886880:CDS 25.0%
!!! TATGACATTGATTTTGGATT+TGG + chr6_1:47294816-47294835 Msa0886880:CDS 25.0%
!!! ATGACATTGATTTTGGATTT+GGG + chr6_1:47294817-47294836 Msa0886880:CDS 25.0%
! CATTGATGTTGAATTAACAT+TGG + chr6_1:47294923-47294942 Msa0886880:CDS 25.0%
! ATTTGTGCAATAAGAGAATT+TGG + chr6_1:47295017-47295036 Msa0886880:three_prime_UTR 25.0%
! TTCTATGTTTAGATTGTTGA+AGG + chr6_1:47295043-47295062 Msa0886880:three_prime_UTR 25.0%
! TCTATGTTTAGATTGTTGAA+GGG + chr6_1:47295044-47295063 Msa0886880:three_prime_UTR 25.0%
! TTTGATATAATGTTGTGTGT+TGG + chr6_1:47295120-47295139 Msa0886880:three_prime_UTR 25.0%
! TTGATATAATGTTGTGTGTT+GGG + chr6_1:47295121-47295140 Msa0886880:three_prime_UTR 25.0%
!! TTGAACTTGGTAATAATGTT+TGG + chr6_1:47295178-47295197 Msa0886880:three_prime_UTR 25.0%
!! TGAACTTGGTAATAATGTTT+GGG + chr6_1:47295179-47295198 Msa0886880:three_prime_UTR 25.0%
TGAAACCTGAGGAAAAAATT+GGG + chr6_1:47286633-47286652 Msa0886880:CDS 30.0%
!! TTTTTCCCAATTTTTTCCTC+AGG - chr6_1:47286641-47286660 None:intergenic 30.0%
TGAGGAAAAAATTGGGAAAA+AGG + chr6_1:47286640-47286659 Msa0886880:CDS 30.0%
AGTAAAAAGCTAAGTAAGGT+AGG - chr6_1:47286688-47286707 None:intergenic 30.0%
! TGTTGAATATGATGATGACT+TGG + chr6_1:47286847-47286866 Msa0886880:CDS 30.0%
AGGAATCAATTCCTTCAAAA+TGG - chr6_1:47286945-47286964 None:intergenic 30.0%
! AAGGAATTGATTCCTTATAG+TGG + chr6_1:47286950-47286969 Msa0886880:CDS 30.0%
! GGCTAATAATTCTTTTGGTA+TGG - chr6_1:47287433-47287452 None:intergenic 30.0%
! GAATTATTAGCCTCATAGTT+TGG + chr6_1:47287441-47287460 Msa0886880:intron 30.0%
AGTTGAAAAGTTTGTGTATG+TGG + chr6_1:47287990-47288009 Msa0886880:intron 30.0%
AAGAACCCATTCAGTTATAT+TGG - chr6_1:47288457-47288476 None:intergenic 30.0%
TCAAGAAGACAACAACTAAA+AGG + chr6_1:47288507-47288526 Msa0886880:intron 30.0%
!! TACTGTTGATTCATGAGATA+AGG - chr6_1:47288597-47288616 None:intergenic 30.0%
AGATAAAGAGATGACGTAAA+AGG + chr6_1:47288958-47288977 Msa0886880:intron 30.0%
GATAAAGAGATGACGTAAAA+GGG + chr6_1:47288959-47288978 Msa0886880:intron 30.0%
ATAAAGAGATGACGTAAAAG+GGG + chr6_1:47288960-47288979 Msa0886880:intron 30.0%
!!! TAGATCTTGTTTTATGCAAG+AGG - chr6_1:47289104-47289123 None:intergenic 30.0%
!!! ATCTTTTTTGACTCAATGTG+TGG - chr6_1:47289177-47289196 None:intergenic 30.0%
! ACTGTAAGGTATTTAATGTG+TGG - chr6_1:47289203-47289222 None:intergenic 30.0%
! AACTGCAACTAATTTTTCTG+CGG - chr6_1:47289279-47289298 None:intergenic 30.0%
!!! GTTACTGTTATTTTGATTGG+TGG - chr6_1:47289658-47289677 None:intergenic 30.0%
GTAACTAAAATGAACTTTCC+TGG + chr6_1:47289673-47289692 Msa0886880:intron 30.0%
!!! TCAAACGCAACTCTTTTTTA+TGG - chr6_1:47289706-47289725 None:intergenic 30.0%
ATCTATTATGTTATGGTCTC+TGG - chr6_1:47289936-47289955 None:intergenic 30.0%
!!! GGACATCTTTTTTTAACTTG+TGG - chr6_1:47289962-47289981 None:intergenic 30.0%
! ATGCTATTGATAATTGGAGT+TGG - chr6_1:47290231-47290250 None:intergenic 30.0%
! AGGTGAATGCTATTGATAAT+TGG - chr6_1:47290237-47290256 None:intergenic 30.0%
! ATTACATAACCGTGTTTTAC+AGG - chr6_1:47290257-47290276 None:intergenic 30.0%
!! ATTTGATTTGGCTGTAGATA+AGG - chr6_1:47290395-47290414 None:intergenic 30.0%
ATTTCCTAGGCTATTTGATT+TGG - chr6_1:47290407-47290426 None:intergenic 30.0%
!!! ATGGTATGTGTACTCTTTTT+TGG - chr6_1:47290468-47290487 None:intergenic 30.0%
AATGTTATGTAAGGTTAGAG+GGG - chr6_1:47290548-47290567 None:intergenic 30.0%
GAATGTTATGTAAGGTTAGA+GGG - chr6_1:47290549-47290568 None:intergenic 30.0%
AGAATGTTATGTAAGGTTAG+AGG - chr6_1:47290550-47290569 None:intergenic 30.0%
!! CTTATGGTATCGTGTTTTAA+AGG - chr6_1:47290635-47290654 None:intergenic 30.0%
GAAAAATAGCTTGGGTTAAA+TGG - chr6_1:47290771-47290790 None:intergenic 30.0%
GAATTCGAGAAAAATAGCTT+GGG - chr6_1:47290779-47290798 None:intergenic 30.0%
AGAATTCGAGAAAAATAGCT+TGG - chr6_1:47290780-47290799 None:intergenic 30.0%
ATAAGAGAAATTATACCTGC+AGG + chr6_1:47290838-47290857 Msa0886880:intron 30.0%
!!! GTACTTCCTTTCTTTTTTCA+AGG - chr6_1:47290866-47290885 None:intergenic 30.0%
! AAAAAAGAAAGGAAGTACAC+CGG + chr6_1:47290868-47290887 Msa0886880:intron 30.0%
TTGGTTATGAATTGTCAAAG+GGG - chr6_1:47291063-47291082 None:intergenic 30.0%
GTTGGTTATGAATTGTCAAA+GGG - chr6_1:47291064-47291083 None:intergenic 30.0%
CATGAGAATGTTAAAACCTT+CGG + chr6_1:47291326-47291345 Msa0886880:intron 30.0%
!!! AAGTGGATTTTAGAATGTGT+GGG - chr6_1:47291462-47291481 None:intergenic 30.0%
! GTTTAAAGTAGACTTCGAAA+AGG - chr6_1:47291556-47291575 None:intergenic 30.0%
CGATAATCATTGAATTGTTG+AGG + chr6_1:47291768-47291787 Msa0886880:intron 30.0%
! TTTTATCGCTTTGATTCCAA+AGG - chr6_1:47291802-47291821 None:intergenic 30.0%
AGAAATGGGAAATTGACAAA+AGG - chr6_1:47291837-47291856 None:intergenic 30.0%
TTTCCCATTTCTATGAAACT+CGG + chr6_1:47291845-47291864 Msa0886880:intron 30.0%
TTTCCGAGTTTCATAGAAAT+GGG - chr6_1:47291851-47291870 None:intergenic 30.0%
ATTTCCGAGTTTCATAGAAA+TGG - chr6_1:47291852-47291871 None:intergenic 30.0%
!! GACAAATTTGTTGTTAGATG+AGG - chr6_1:47292339-47292358 None:intergenic 30.0%
ATTGCTGAAATACAGCTTAA+AGG - chr6_1:47292447-47292466 None:intergenic 30.0%
!!! TCATGTACCGTTGTTTTTAA+TGG - chr6_1:47292615-47292634 None:intergenic 30.0%
TACGCTATCTGAATACAATT+TGG + chr6_1:47292653-47292672 Msa0886880:intron 30.0%
TTGATTTACCTATTTGTGGT+CGG - chr6_1:47292763-47292782 None:intergenic 30.0%
!! TTTTAACTCTATTCGGTATG+GGG - chr6_1:47292867-47292886 None:intergenic 30.0%
!!! GATTTTAACTCTATTCGGTA+TGG - chr6_1:47292869-47292888 None:intergenic 30.0%
!!! GTGGAGATTTTAACTCTATT+CGG - chr6_1:47292874-47292893 None:intergenic 30.0%
! TTTTCTTTTCAACCTTCGAT+AGG - chr6_1:47293121-47293140 None:intergenic 30.0%
! AATGTGATAAAAGCTTTGTG+GGG - chr6_1:47293160-47293179 None:intergenic 30.0%
TCTTGAATGCATAGAACATA+AGG + chr6_1:47293205-47293224 Msa0886880:intron 30.0%
ACTAATTGTAGCCTAAGAAA+TGG + chr6_1:47293444-47293463 Msa0886880:intron 30.0%
CATACAAATAAGGAAAGGAA+AGG - chr6_1:47293973-47293992 None:intergenic 30.0%
AGCTAACAAAGCTTAAAGAT+GGG + chr6_1:47294025-47294044 Msa0886880:intron 30.0%
!!! GAAGATTTTTTCCCTAAGTA+TGG - chr6_1:47294355-47294374 None:intergenic 30.0%
TTGATCCAAAAGGTAATTGA+AGG + chr6_1:47294672-47294691 Msa0886880:CDS 30.0%
ATGTCATAAACCTTAAACCT+AGG - chr6_1:47294804-47294823 None:intergenic 30.0%
GAACCAACAACAAATTTGAT+GGG + chr6_1:47294862-47294881 Msa0886880:CDS 30.0%
GCAAGATAAGGAATTTCTTA+TGG + chr6_1:47294971-47294990 Msa0886880:CDS 30.0%
TCTCTTATTGCACAAATTCT+TGG - chr6_1:47295014-47295033 None:intergenic 30.0%
GCTTTGATTGAATTTGAACT+TGG + chr6_1:47295165-47295184 Msa0886880:three_prime_UTR 30.0%
GCATGCATTTATGGAATTCA+TGG - chr6_1:47286454-47286473 None:intergenic 35.0%
! TGTGTGAGATGTGATTTTTG+AGG - chr6_1:47286500-47286519 None:intergenic 35.0%
GTGAAACCTGAGGAAAAAAT+TGG + chr6_1:47286632-47286651 Msa0886880:CDS 35.0%
!! TGGGAAAAAGGAGTATCAAT+TGG + chr6_1:47286652-47286671 Msa0886880:CDS 35.0%
CATCAACTAGCTGGTAAATT+AGG + chr6_1:47286800-47286819 Msa0886880:CDS 35.0%
!! GAATATGATGATGACTTGGT+TGG + chr6_1:47286851-47286870 Msa0886880:CDS 35.0%
!!! TGAAAGTAGTGCCATTTTGA+AGG + chr6_1:47286931-47286950 Msa0886880:CDS 35.0%
AGTGGAATCTTGAATTTGGA+AGG + chr6_1:47286968-47286987 Msa0886880:CDS 35.0%
ACTAGGTGATTCCTACATTT+AGG + chr6_1:47287166-47287185 Msa0886880:intron 35.0%
AAGTTGAATGTTGACCCTTT+AGG - chr6_1:47287315-47287334 None:intergenic 35.0%
GACTCTTTAACCAAACTATG+AGG - chr6_1:47287454-47287473 None:intergenic 35.0%
CACACATAGAACTTGATCTA+AGG + chr6_1:47287905-47287924 Msa0886880:intron 35.0%
TTAGTTTCCGCATTTATGCA+TGG + chr6_1:47288235-47288254 Msa0886880:intron 35.0%
GTATTCTCCATGCATAAATG+CGG - chr6_1:47288245-47288264 None:intergenic 35.0%
ATTTATGCATGGAGAATACC+AGG + chr6_1:47288246-47288265 Msa0886880:intron 35.0%
CATTTCTCTTTATGCAAACC+TGG - chr6_1:47288267-47288286 None:intergenic 35.0%
! ATTGAGCAATCCTTTAAGGA+AGG + chr6_1:47288854-47288873 Msa0886880:intron 35.0%
! TTGAGCAATCCTTTAAGGAA+GGG + chr6_1:47288855-47288874 Msa0886880:intron 35.0%
!! TTTTTGACTCAATGTGTGGT+TGG - chr6_1:47289173-47289192 None:intergenic 35.0%
AAAATTGAGCAATGCACACT+TGG - chr6_1:47289370-47289389 None:intergenic 35.0%
TTCACACCCATACAAAGAAT+CGG + chr6_1:47289626-47289645 Msa0886880:intron 35.0%
!!! CTTTTTTATGGTTGAAAGCC+AGG - chr6_1:47289694-47289713 None:intergenic 35.0%
TTTGATCTTCTCCAAAAGAC+CGG + chr6_1:47289721-47289740 Msa0886880:intron 35.0%
TAGTATGTGTATCCTCATCA+TGG + chr6_1:47289744-47289763 Msa0886880:intron 35.0%
GTATATGGTATGCTTGTATG+TGG - chr6_1:47289802-47289821 None:intergenic 35.0%
CGTACACATTCTTATCTTAC+AGG - chr6_1:47289824-47289843 None:intergenic 35.0%
GTAAGATAAGAATGTGTACG+CGG + chr6_1:47289824-47289843 Msa0886880:intron 35.0%
TCATCATTTCTGCTTTATGG+CGG - chr6_1:47289858-47289877 None:intergenic 35.0%
! TATGTTATGGTCTCTGGTTT+CGG - chr6_1:47289930-47289949 None:intergenic 35.0%
! AAAAAGATGTCCTGCTGTTT+CGG + chr6_1:47289970-47289989 Msa0886880:intron 35.0%
! TCACAACCAAAAGCACATAA+AGG + chr6_1:47289998-47290017 Msa0886880:intron 35.0%
CTAGAGACAATTTAATGCGA+AGG - chr6_1:47290045-47290064 None:intergenic 35.0%
CGCATTAAATTGTCTCTAGT+CGG + chr6_1:47290046-47290065 Msa0886880:intron 35.0%
!! CAAAGGTATCTTTGTTCGTT+TGG - chr6_1:47290093-47290112 None:intergenic 35.0%
ACGAACAAAGATACCTTTGT+CGG + chr6_1:47290094-47290113 Msa0886880:intron 35.0%
GGAATCTTGGTGAAAATGTT+TGG - chr6_1:47290132-47290151 None:intergenic 35.0%
!! TCGCTTTATTGTTAGTCTTG+AGG - chr6_1:47290167-47290186 None:intergenic 35.0%
AGTTCATGGTTATTCAGTGA+GGG - chr6_1:47290197-47290216 None:intergenic 35.0%
TCACTGAATAACCATGAACT+GGG + chr6_1:47290197-47290216 Msa0886880:intron 35.0%
TAGCATTCACCTGTAAAACA+CGG + chr6_1:47290245-47290264 Msa0886880:intron 35.0%
! CTAGGAAATTTGAAACGTAG+CGG + chr6_1:47290418-47290437 Msa0886880:intron 35.0%
ATGTTATGTAAGGTTAGAGG+GGG - chr6_1:47290547-47290566 None:intergenic 35.0%
! ATGGTGGAGAATGTTATGTA+AGG - chr6_1:47290557-47290576 None:intergenic 35.0%
ATTTGTCTTTGTTGGGAAAG+TGG - chr6_1:47290687-47290706 None:intergenic 35.0%
GGATGATATTTGTGTTCCTA+AGG - chr6_1:47290749-47290768 None:intergenic 35.0%
GCAACTATACGATTTATCAC+CGG + chr6_1:47290970-47290989 Msa0886880:intron 35.0%
GAAGTCCCAAATACACAAAA+GGG + chr6_1:47291031-47291050 Msa0886880:intron 35.0%
! GACATCCCTTTTGTGTATTT+GGG - chr6_1:47291039-47291058 None:intergenic 35.0%
TGGTTATGAATTGTCAAAGG+GGG - chr6_1:47291062-47291081 None:intergenic 35.0%
! CGTTGGTTATGAATTGTCAA+AGG - chr6_1:47291065-47291084 None:intergenic 35.0%
AAATGATTCTTGGTTGTCAG+AGG - chr6_1:47291091-47291110 None:intergenic 35.0%
!!! TGCAGTTTTGATTTTGTTCG+AGG - chr6_1:47291169-47291188 None:intergenic 35.0%
! TCATTTTAGGCGAAAAAAGC+TGG - chr6_1:47291212-47291231 None:intergenic 35.0%
GCCTAAAATGAGTGTATCAT+CGG + chr6_1:47291221-47291240 Msa0886880:intron 35.0%
TAACATTCTCATGCAATCTG+CGG - chr6_1:47291319-47291338 None:intergenic 35.0%
! ATCACCGTTCCTTTTCTTAT+TGG - chr6_1:47291355-47291374 None:intergenic 35.0%
AAGAAAAGGAACGGTGATAA+TGG + chr6_1:47291357-47291376 Msa0886880:intron 35.0%
!! TCAGCATCGATTCTTGTTAA+CGG - chr6_1:47291432-47291451 None:intergenic 35.0%
!!! GATTTTAGAATGTGTGGGAA+CGG - chr6_1:47291457-47291476 None:intergenic 35.0%
!!! CAAGTGGATTTTAGAATGTG+TGG - chr6_1:47291463-47291482 None:intergenic 35.0%
TGAAGCTAGACGTTGTAAAA+AGG - chr6_1:47291589-47291608 None:intergenic 35.0%
AAAGGGAAGCAAATTCTAGA+TGG - chr6_1:47291639-47291658 None:intergenic 35.0%
TTGCTTCCCTTTAACAAAAG+CGG + chr6_1:47291647-47291666 Msa0886880:intron 35.0%
!! CTCAATCCGCTTTTGTTAAA+GGG - chr6_1:47291656-47291675 None:intergenic 35.0%
!! TCTCAATCCGCTTTTGTTAA+AGG - chr6_1:47291657-47291676 None:intergenic 35.0%
TCTTGTTGGATGCATGTATA+AGG - chr6_1:47291739-47291758 None:intergenic 35.0%
! AACAAAACCATTTTCTGTGG+AGG - chr6_1:47291991-47292010 None:intergenic 35.0%
AAGTTATCTTTGGTTGAAGC+TGG - chr6_1:47292020-47292039 None:intergenic 35.0%
! TTAATGGTGTCAATGTCGAA+GGG - chr6_1:47292139-47292158 None:intergenic 35.0%
TTATGACTAATCGCCATAGA+CGG - chr6_1:47292184-47292203 None:intergenic 35.0%
CGGTTAAAATGGTTACAAGA+AGG - chr6_1:47292236-47292255 None:intergenic 35.0%
GTATGAATTGGCAGAAATCT+CGG - chr6_1:47292256-47292275 None:intergenic 35.0%
GAGTTCAGTGTAGTATGAAT+TGG - chr6_1:47292268-47292287 None:intergenic 35.0%
TGAAATACAGCTTAAAGGAG+TGG - chr6_1:47292442-47292461 None:intergenic 35.0%
! CTTACGTATGCTAAAGTGTT+GGG - chr6_1:47292564-47292583 None:intergenic 35.0%
CAACACTTTAGCATACGTAA+GGG + chr6_1:47292563-47292582 Msa0886880:intron 35.0%
!! AATGGTTGATGAAGCCAATT+GGG - chr6_1:47292597-47292616 None:intergenic 35.0%
!! TAATGGTTGATGAAGCCAAT+TGG - chr6_1:47292598-47292617 None:intergenic 35.0%
! GTTTCTTGCTGTCAGAAAAA+TGG - chr6_1:47292691-47292710 None:intergenic 35.0%
GGGTTCTTTATTCAATCAGA+TGG - chr6_1:47292828-47292847 None:intergenic 35.0%
GTCAGCTAAAAGAAACTTGT+GGG - chr6_1:47292948-47292967 None:intergenic 35.0%
TGTCAGCTAAAAGAAACTTG+TGG - chr6_1:47292949-47292968 None:intergenic 35.0%
!! CTTTTAGCTGACATATCACA+AGG + chr6_1:47292956-47292975 Msa0886880:intron 35.0%
!! TGTACTTGTTATTACCGGTA+GGG - chr6_1:47293026-47293045 None:intergenic 35.0%
!! ATGTACTTGTTATTACCGGT+AGG - chr6_1:47293027-47293046 None:intergenic 35.0%
TACCGGTAATAACAAGTACA+TGG + chr6_1:47293026-47293045 Msa0886880:intron 35.0%
!! GACCATGTACTTGTTATTAC+CGG - chr6_1:47293031-47293050 None:intergenic 35.0%
TGCATTCAAGAATCTAAGCT+TGG - chr6_1:47293196-47293215 None:intergenic 35.0%
CATTATAATGTGAGGGGTTT+GGG - chr6_1:47293280-47293299 None:intergenic 35.0%
ACATTATAATGTGAGGGGTT+TGG - chr6_1:47293281-47293300 None:intergenic 35.0%
ATTGTATTCATATCCGACAC+CGG + chr6_1:47293531-47293550 Msa0886880:intron 35.0%
GCAAATGTAACAAGGATTTC+CGG - chr6_1:47293553-47293572 None:intergenic 35.0%
TGGAAGTTATATATGGGAAG+AGG - chr6_1:47293646-47293665 None:intergenic 35.0%
AATTTGGCAAACGGTACAAT+TGG - chr6_1:47293811-47293830 None:intergenic 35.0%
ACCAATGGTAATTTGGCAAA+CGG - chr6_1:47293820-47293839 None:intergenic 35.0%
!! CATCTTTAAGCTTTGTTAGC+TGG - chr6_1:47294026-47294045 None:intergenic 35.0%
CAGCTAACAAAGCTTAAAGA+TGG + chr6_1:47294024-47294043 Msa0886880:intron 35.0%
GAGGTAAAGGATGAACAAAA+TGG + chr6_1:47294252-47294271 Msa0886880:CDS 35.0%
!!! TGTTGACTTGATTTTGTCGA+TGG - chr6_1:47294394-47294413 None:intergenic 35.0%
AAAACCATTCTCAACTTTCC+AGG + chr6_1:47294443-47294462 Msa0886880:CDS 35.0%
CGGTGAATATAGCTTGAATT+AGG - chr6_1:47294602-47294621 None:intergenic 35.0%
!! CATCAATAGCTTTAGCATCA+TGG - chr6_1:47294698-47294717 None:intergenic 35.0%
TTGATGAACGTAACAAAGAG+TGG + chr6_1:47294712-47294731 Msa0886880:CDS 35.0%
TGATGAACGTAACAAAGAGT+GGG + chr6_1:47294713-47294732 Msa0886880:CDS 35.0%
GGAACCAACAACAAATTTGA+TGG + chr6_1:47294861-47294880 Msa0886880:CDS 35.0%
!! CATCCCATCAAATTTGTTGT+TGG - chr6_1:47294868-47294887 None:intergenic 35.0%
GGGATGATTTATTTGTATCC+AGG + chr6_1:47294882-47294901 Msa0886880:CDS 35.0%
!! TGTGTGTTGGGTTTTGTATT+TGG + chr6_1:47295133-47295152 Msa0886880:three_prime_UTR 35.0%
! GTGTTGTTGGCATGCATTTA+TGG - chr6_1:47286463-47286482 None:intergenic 40.0%
CAAAAGCTATGTGAAACCTG+AGG + chr6_1:47286622-47286641 Msa0886880:CDS 40.0%
!!! TGGGCTTAGTGTAGTTTTGA+AGG + chr6_1:47286772-47286791 Msa0886880:CDS 40.0%
AAGGAGTTTCATCAACTAGC+TGG + chr6_1:47286791-47286810 Msa0886880:CDS 40.0%
ATTACCTGAACAGCCAACAA+GGG - chr6_1:47287004-47287023 None:intergenic 40.0%
AATTACCTGAACAGCCAACA+AGG - chr6_1:47287005-47287024 None:intergenic 40.0%
! TGGGTTGAGAGATCATAGTT+TGG + chr6_1:47287406-47287425 Msa0886880:intron 40.0%
TTGAGTACTTGCCAAACCAT+TGG + chr6_1:47288315-47288334 Msa0886880:intron 40.0%
TGAGTACTTGCCAAACCATT+GGG + chr6_1:47288316-47288335 Msa0886880:intron 40.0%
!! TTTTAAGTGATGTGGCCCAA+TGG - chr6_1:47288334-47288353 None:intergenic 40.0%
CTTTCTACAAACCGGTTAAC+CGG + chr6_1:47288367-47288386 Msa0886880:intron 40.0%
! CTTTTCTAAACCAGCATAGC+CGG - chr6_1:47288389-47288408 None:intergenic 40.0%
GTTGTTGTCTTCTTGAGATC+TGG - chr6_1:47288503-47288522 None:intergenic 40.0%
! TGAGCAATCCTTTAAGGAAG+GGG + chr6_1:47288856-47288875 Msa0886880:intron 40.0%
! AATCCTTTAAGGAAGGGGAA+AGG + chr6_1:47288861-47288880 Msa0886880:intron 40.0%
! ATCCTTTAAGGAAGGGGAAA+GGG + chr6_1:47288862-47288881 Msa0886880:intron 40.0%
AGATGACGTAAAAGGGGAAA+AGG + chr6_1:47288966-47288985 Msa0886880:intron 40.0%
GATGACGTAAAAGGGGAAAA+GGG + chr6_1:47288967-47288986 Msa0886880:intron 40.0%
TATTAAGAAAGTGGGTGACG+TGG + chr6_1:47289022-47289041 Msa0886880:intron 40.0%
! TGGCTGATCTTTTTCTTGTG+TGG - chr6_1:47289153-47289172 None:intergenic 40.0%
TCACACCCATACAAAGAATC+GGG + chr6_1:47289627-47289646 Msa0886880:intron 40.0%
AGAGACCCGATTCTTTGTAT+GGG - chr6_1:47289635-47289654 None:intergenic 40.0%
! TACACATACTACCGGTCTTT+TGG - chr6_1:47289735-47289754 None:intergenic 40.0%
GATGAGGATACACATACTAC+CGG - chr6_1:47289743-47289762 None:intergenic 40.0%
TGTGGACGTTATGGAAAGAT+AGG - chr6_1:47289784-47289803 None:intergenic 40.0%
ATGCTTGTATGTGGACGTTA+TGG - chr6_1:47289793-47289812 None:intergenic 40.0%
CATCATTTCTGCTTTATGGC+GGG - chr6_1:47289857-47289876 None:intergenic 40.0%
TGTGATATTACCGAAACAGC+AGG - chr6_1:47289983-47290002 None:intergenic 40.0%
!! TGTTAGTCTTGAGGATGACT+CGG - chr6_1:47290158-47290177 None:intergenic 40.0%
CAGTTCATGGTTATTCAGTG+AGG - chr6_1:47290198-47290217 None:intergenic 40.0%
CTCACTGAATAACCATGAAC+TGG + chr6_1:47290196-47290215 Msa0886880:intron 40.0%
GGCTGTAGATAAGGTTTGTA+CGG - chr6_1:47290386-47290405 None:intergenic 40.0%
ACAGCCAAATCAAATAGCCT+AGG + chr6_1:47290400-47290419 Msa0886880:intron 40.0%
CGCTACGTTTCAAATTTCCT+AGG - chr6_1:47290420-47290439 None:intergenic 40.0%
TTTGGTACGACCATTGGATA+GGG - chr6_1:47290450-47290469 None:intergenic 40.0%
! TTTTGGTACGACCATTGGAT+AGG - chr6_1:47290451-47290470 None:intergenic 40.0%
!!! CTCTTTTTTGGTACGACCAT+TGG - chr6_1:47290456-47290475 None:intergenic 40.0%
TGTTATGTAAGGTTAGAGGG+GGG - chr6_1:47290546-47290565 None:intergenic 40.0%
TGATTGACAAAGAGGGCTTA+TGG - chr6_1:47290651-47290670 None:intergenic 40.0%
! CGGATGTTGATTGACAAAGA+GGG - chr6_1:47290658-47290677 None:intergenic 40.0%
ATTTGTGTTCCTAAGGAGAC+TGG - chr6_1:47290742-47290761 None:intergenic 40.0%
CAGGAGCCTTGAAAAAAGAA+AGG + chr6_1:47290857-47290876 Msa0886880:intron 40.0%
ATCTGTCTTATCGTCACTTC+CGG - chr6_1:47290890-47290909 None:intergenic 40.0%
CAGATTTCAGCAGTATCAGT+CGG + chr6_1:47290905-47290924 Msa0886880:intron 40.0%
TTAGTTGAATCCCCTCCAAT+TGG + chr6_1:47291009-47291028 Msa0886880:intron 40.0%
! ATTTGGGACTTCCAATTGGA+GGG - chr6_1:47291023-47291042 None:intergenic 40.0%
! TATTTGGGACTTCCAATTGG+AGG - chr6_1:47291024-47291043 None:intergenic 40.0%
! GTGTATTTGGGACTTCCAAT+TGG - chr6_1:47291027-47291046 None:intergenic 40.0%
GGAAGTCCCAAATACACAAA+AGG + chr6_1:47291030-47291049 Msa0886880:intron 40.0%
! GGACATCCCTTTTGTGTATT+TGG - chr6_1:47291040-47291059 None:intergenic 40.0%
GGTTATGAATTGTCAAAGGG+GGG - chr6_1:47291061-47291080 None:intergenic 40.0%
! ATTTTGTTCGAGGAGATGTC+TGG - chr6_1:47291159-47291178 None:intergenic 40.0%
! GCCGATGATACACTCATTTT+AGG - chr6_1:47291225-47291244 None:intergenic 40.0%
CTTTACAAGGGTTATGGAGT+GGG - chr6_1:47291285-47291304 None:intergenic 40.0%
GCAGCCAATAAGAAAAGGAA+CGG + chr6_1:47291348-47291367 Msa0886880:intron 40.0%
! AGCTGAGTTTAAGATGGAGA+GGG - chr6_1:47291400-47291419 None:intergenic 40.0%
TCCATCTTAAACTCAGCTGT+AGG + chr6_1:47291402-47291421 Msa0886880:intron 40.0%
CCATCTTAAACTCAGCTGTA+GGG + chr6_1:47291403-47291422 Msa0886880:intron 40.0%
GCATGAATTTCCCAACTTTG+TGG - chr6_1:47291488-47291507 None:intergenic 40.0%
TATCCTCATTGCCAATGAAG+CGG - chr6_1:47291616-47291635 None:intergenic 40.0%
AATAGACTTCGAGGTGTACT+TGG - chr6_1:47291696-47291715 None:intergenic 40.0%
GTTCTAGCAAATAGACTTCG+AGG - chr6_1:47291705-47291724 None:intergenic 40.0%
! TATTTGCTAGAACCTTCGCA+AGG + chr6_1:47291712-47291731 Msa0886880:intron 40.0%
ATGCATCCAACAAGAGAGAT+TGG + chr6_1:47291744-47291763 Msa0886880:intron 40.0%
TATCGTCCAATCTCTCTTGT+TGG - chr6_1:47291753-47291772 None:intergenic 40.0%
! AAAACCATTTTCTGTGGAGG+AGG - chr6_1:47291988-47292007 None:intergenic 40.0%
GCCTTGGTACATTATGATGA+CGG + chr6_1:47292066-47292085 Msa0886880:intron 40.0%
TCCGTCATCATAATGTACCA+AGG - chr6_1:47292070-47292089 None:intergenic 40.0%
! TAATGGTGTCAATGTCGAAG+GGG - chr6_1:47292138-47292157 None:intergenic 40.0%
! GTTAATGGTGTCAATGTCGA+AGG - chr6_1:47292140-47292159 None:intergenic 40.0%
GGCAGAAATCTCGGTTAAAA+TGG - chr6_1:47292247-47292266 None:intergenic 40.0%
TGAGGAAGTGAAGGAAATCA+AGG - chr6_1:47292321-47292340 None:intergenic 40.0%
GTTGTTAGATGAGGAAGTGA+AGG - chr6_1:47292330-47292349 None:intergenic 40.0%
CAACAAATTTGTCTCTGCCT+TGG + chr6_1:47292346-47292365 Msa0886880:intron 40.0%
GTCACTGTAACCAGGAAAAT+CGG + chr6_1:47292538-47292557 Msa0886880:intron 40.0%
CCTTACGTATGCTAAAGTGT+TGG - chr6_1:47292565-47292584 None:intergenic 40.0%
CCAACACTTTAGCATACGTA+AGG + chr6_1:47292562-47292581 Msa0886880:intron 40.0%
!! ATGGTTGATGAAGCCAATTG+GGG - chr6_1:47292596-47292615 None:intergenic 40.0%
ATTCAGATAGCGTATCAACG+AGG - chr6_1:47292647-47292666 None:intergenic 40.0%
TTTGTGGTCGGTTATTCACT+TGG - chr6_1:47292751-47292770 None:intergenic 40.0%
GTGAATAACCGACCACAAAT+AGG + chr6_1:47292752-47292771 Msa0886880:intron 40.0%
ACAAACACAAACACACAGCT+CGG + chr6_1:47292892-47292911 Msa0886880:intron 40.0%
CTAAAAGAAACTTGTGGGAG+CGG - chr6_1:47292943-47292962 None:intergenic 40.0%
! CTGGAGGTTTGATAACTGTT+TGG - chr6_1:47293093-47293112 None:intergenic 40.0%
CTTAGTACTAGAGCAATGCA+TGG + chr6_1:47293392-47293411 Msa0886880:intron 40.0%
!!! TTGTGTCGTTTTGTTTTCGG+TGG + chr6_1:47293476-47293495 Msa0886880:intron 40.0%
CATCATGCGCAAATGTAACA+AGG - chr6_1:47293561-47293580 None:intergenic 40.0%
ACCGTTTGCCAAATTACCAT+TGG + chr6_1:47293816-47293835 Msa0886880:intron 40.0%
!! CTTAAAGATGGGCTAGCAAT+GGG + chr6_1:47294036-47294055 Msa0886880:CDS 40.0%
TTTAACCATGCTGTCCTTGA+TGG + chr6_1:47294066-47294085 Msa0886880:CDS 40.0%
GGTTCTTTCCAAGAATGGTT+GGG - chr6_1:47294157-47294176 None:intergenic 40.0%
TGGTTCTTTCCAAGAATGGT+TGG - chr6_1:47294158-47294177 None:intergenic 40.0%
ACCATTCTTGGAAAGAACCA+AGG + chr6_1:47294158-47294177 Msa0886880:CDS 40.0%
TTCATCCTTTACCTCACCAT+TGG - chr6_1:47294247-47294266 None:intergenic 40.0%
TGTGAACACTGTGTAGTCTT+CGG - chr6_1:47294520-47294539 None:intergenic 40.0%
TCAAGCTATATTCACCGTCA+CGG + chr6_1:47294605-47294624 Msa0886880:CDS 40.0%
! CATGGCCTTCAATTACCTTT+TGG - chr6_1:47294680-47294699 None:intergenic 40.0%
TGGAAGTTCACCTAGGTTTA+AGG + chr6_1:47294791-47294810 Msa0886880:CDS 40.0%
TATTTGTATCCAGGCAAGAG+TGG + chr6_1:47294891-47294910 Msa0886880:CDS 40.0%
TGAATTAACATTGGAGCCTG+AGG + chr6_1:47294932-47294951 Msa0886880:CDS 40.0%
!! GTGTTGGGTTTTGTATTTGG+TGG + chr6_1:47295136-47295155 Msa0886880:three_prime_UTR 40.0%
GAAGCTGTTGCTGATGAGAT+TGG + chr6_1:47286887-47286906 Msa0886880:CDS 45.0%
TGGCATTTGGAGAGAACTCT+AGG - chr6_1:47287491-47287510 None:intergenic 45.0%
! TAACTGAATGGGTTCTTCGC+TGG + chr6_1:47288460-47288479 Msa0886880:intron 45.0%
! AACTGAATGGGTTCTTCGCT+GGG + chr6_1:47288461-47288480 Msa0886880:intron 45.0%
TAACTATCCCTACACCCAAC+TGG + chr6_1:47288615-47288634 Msa0886880:intron 45.0%
TATCCCTTCTTTGGCCAGTT+GGG - chr6_1:47288632-47288651 None:intergenic 45.0%
ATATCCCTTCTTTGGCCAGT+TGG - chr6_1:47288633-47288652 None:intergenic 45.0%
CGTTGCTGCAACATTCTCTA+TGG - chr6_1:47288703-47288722 None:intergenic 45.0%
! TCCTTTAAGGAAGGGGAAAG+GGG + chr6_1:47288863-47288882 Msa0886880:intron 45.0%
TGGTGTACGAGGCAATTGAT+GGG + chr6_1:47288889-47288908 Msa0886880:intron 45.0%
! CAATTGATGGGTGAGGTTGA+GGG + chr6_1:47288901-47288920 Msa0886880:intron 45.0%
AAAGGGGAAAAGGGATGAAC+AGG + chr6_1:47288976-47288995 Msa0886880:intron 45.0%
AAGGGATGAACAGGTAGAAC+AGG + chr6_1:47288985-47289004 Msa0886880:intron 45.0%
CTCTATGCACATCTTGTGCT+TGG - chr6_1:47289522-47289541 None:intergenic 45.0%
GAGAGACCCGATTCTTTGTA+TGG - chr6_1:47289636-47289655 None:intergenic 45.0%
CCTTCGTATCTTCCATGATG+AGG - chr6_1:47289759-47289778 None:intergenic 45.0%
CCTCATCATGGAAGATACGA+AGG + chr6_1:47289756-47289775 Msa0886880:intron 45.0%
GGCATGGTTAGGATTGTCTA+TGG - chr6_1:47289909-47289928 None:intergenic 45.0%
GCATAGTCACATACCGACAA+AGG - chr6_1:47290110-47290129 None:intergenic 45.0%
! GATGACTCGGAAAGGAATCT+TGG - chr6_1:47290145-47290164 None:intergenic 45.0%
AATAACCATGAACTGGGTCG+AGG + chr6_1:47290203-47290222 Msa0886880:intron 45.0%
ATAACCATGAACTGGGTCGA+GGG + chr6_1:47290204-47290223 Msa0886880:intron 45.0%
TTGGTACGACCATTGGATAG+GGG - chr6_1:47290449-47290468 None:intergenic 45.0%
!! GGTGTAGGGAATTGGTTTGA+GGG - chr6_1:47290514-47290533 None:intergenic 45.0%
GTTATGTAAGGTTAGAGGGG+GGG - chr6_1:47290545-47290564 None:intergenic 45.0%
!!! CGTGTTTTAAAGGCCCGTTA+TGG - chr6_1:47290625-47290644 None:intergenic 45.0%
! GCGGATGTTGATTGACAAAG+AGG - chr6_1:47290659-47290678 None:intergenic 45.0%
CTTTGTTGGGAAAGTGGTGT+TGG - chr6_1:47290681-47290700 None:intergenic 45.0%
!!! TCTTTTTTCAAGGCTCCTGC+AGG - chr6_1:47290856-47290875 None:intergenic 45.0%
TAGTTGCTCGCTTCACATCT+TGG - chr6_1:47290957-47290976 None:intergenic 45.0%
! TTTGGGACTTCCAATTGGAG+GGG - chr6_1:47291022-47291041 None:intergenic 45.0%
TGATTCTTGGTTGTCAGAGG+CGG - chr6_1:47291088-47291107 None:intergenic 45.0%
! CGAGGAGATGTCTGGTTTAA+AGG - chr6_1:47291151-47291170 None:intergenic 45.0%
GCTTTACAAGGGTTATGGAG+TGG - chr6_1:47291286-47291305 None:intergenic 45.0%
!! CTTTTCTTATTGGCTGCCGA+AGG - chr6_1:47291345-47291364 None:intergenic 45.0%
CTTCGGCAGCCAATAAGAAA+AGG + chr6_1:47291343-47291362 Msa0886880:intron 45.0%
! GCTGAGTTTAAGATGGAGAG+GGG - chr6_1:47291399-47291418 None:intergenic 45.0%
! CAGCTGAGTTTAAGATGGAG+AGG - chr6_1:47291401-47291420 None:intergenic 45.0%
CCCTACAGCTGAGTTTAAGA+TGG - chr6_1:47291406-47291425 None:intergenic 45.0%
! CGAAAAGGCATACGATTCAG+TGG - chr6_1:47291541-47291560 None:intergenic 45.0%
AGCTTCATCAACCGCTTCAT+TGG + chr6_1:47291602-47291621 Msa0886880:intron 45.0%
CATGTATAAGGTCCTTGCGA+AGG - chr6_1:47291727-47291746 None:intergenic 45.0%
TGTTGAGGACTACTCACCTT+TGG + chr6_1:47291783-47291802 Msa0886880:intron 45.0%
AAGCCAAAGTTGACACCATC+CGG + chr6_1:47291918-47291937 Msa0886880:intron 45.0%
TTGACCTCCTCCACAGAAAA+TGG + chr6_1:47291981-47292000 Msa0886880:intron 45.0%
AAAGAAAGATCTGCCACTCC+TGG + chr6_1:47292044-47292063 Msa0886880:intron 45.0%
CATCATAATGTACCAAGGCC+AGG - chr6_1:47292065-47292084 None:intergenic 45.0%
CGTCATTCGCAAAATGTGGA+AGG - chr6_1:47292413-47292432 None:intergenic 45.0%
CCAACGTCATTCGCAAAATG+TGG - chr6_1:47292417-47292436 None:intergenic 45.0%
! CCACATTTTGCGAATGACGT+TGG + chr6_1:47292414-47292433 Msa0886880:intron 45.0%
GTGACTACGTCAATCAGCAA+TGG - chr6_1:47292523-47292542 None:intergenic 45.0%
TTGACGTAGTCACTGTAACC+AGG + chr6_1:47292530-47292549 Msa0886880:intron 45.0%
TTTAGCATACGTAAGGGACG+AGG + chr6_1:47292569-47292588 Msa0886880:intron 45.0%
GCTGTCAGAAAAATGGTGTG+AGG - chr6_1:47292684-47292703 None:intergenic 45.0%
TTCACTTGGTATCGTGGTGA+CGG - chr6_1:47292737-47292756 None:intergenic 45.0%
CGGTTATTCACTTGGTATCG+TGG - chr6_1:47292743-47292762 None:intergenic 45.0%
TAACTCTATTCGGTATGGGG+AGG - chr6_1:47292864-47292883 None:intergenic 45.0%
GAGCTGTGTGTTTGTGTTTG+TGG - chr6_1:47292893-47292912 None:intergenic 45.0%
TTGTGGGGAGACGAACATTA+TGG - chr6_1:47293145-47293164 None:intergenic 45.0%
TATAATGTGAGGGGTTTGGG+TGG - chr6_1:47293277-47293296 None:intergenic 45.0%
ACTAGAGCAATGCATGGCTT+TGG + chr6_1:47293398-47293417 Msa0886880:intron 45.0%
GTAACAAGGATTTCCGGTGT+CGG - chr6_1:47293547-47293566 None:intergenic 45.0%
!! GCTTAAAGATGGGCTAGCAA+TGG + chr6_1:47294035-47294054 Msa0886880:CDS 45.0%
ATGTTCCATCAAGGACAGCA+TGG - chr6_1:47294074-47294093 None:intergenic 45.0%
GTGGCACTTCATGACTTCAT+GGG + chr6_1:47294098-47294117 Msa0886880:CDS 45.0%
AATGGTTGGGCTGTTGTGAT+GGG - chr6_1:47294144-47294163 None:intergenic 45.0%
! GCCTTGGTTCTTTCCAAGAA+TGG - chr6_1:47294162-47294181 None:intergenic 45.0%
AAGCTTCACACGTGTGTTTC+GGG - chr6_1:47294184-47294203 None:intergenic 45.0%
CAAGCTTCACACGTGTGTTT+CGG - chr6_1:47294185-47294204 None:intergenic 45.0%
! TTTACCTCACCATTGGCTGA+TGG - chr6_1:47294240-47294259 None:intergenic 45.0%
ATCAGCCAATGGTGAGGTAA+AGG + chr6_1:47294239-47294258 Msa0886880:CDS 45.0%
TTCAACCTTTGCCTCACCAT+TGG - chr6_1:47294292-47294311 None:intergenic 45.0%
! GATTTTGTCGATGGCTGACT+CGG - chr6_1:47294385-47294404 None:intergenic 45.0%
AGTCAACCAAACCCTTCCAT+CGG + chr6_1:47294413-47294432 Msa0886880:CDS 45.0%
! TTTTGAACCGTCCGATGGAA+GGG - chr6_1:47294427-47294446 None:intergenic 45.0%
!!! AATGGTTTTGAACCGTCCGA+TGG - chr6_1:47294432-47294451 None:intergenic 45.0%
AGAGCCTGGAAAGTTGAGAA+TGG - chr6_1:47294450-47294469 None:intergenic 45.0%
AAATATGAGTGGAGAGAGCC+TGG - chr6_1:47294464-47294483 None:intergenic 45.0%
AGGCTCTCTCCACTCATATT+TGG + chr6_1:47294463-47294482 Msa0886880:CDS 45.0%
GTGAACACTGTGTAGTCTTC+GGG - chr6_1:47294519-47294538 None:intergenic 45.0%
AGGTTTCCAAAGTATGCCTC+CGG - chr6_1:47294582-47294601 None:intergenic 45.0%
!! ATCAAAGAAGCGCCGAATTG+TGG - chr6_1:47294657-47294676 None:intergenic 45.0%
GGTGTGAATTGTGTTGCAGT+TGG + chr6_1:47294771-47294790 Msa0886880:CDS 45.0%
TTGCAGTTGGAAGTTCACCT+AGG + chr6_1:47294784-47294803 Msa0886880:CDS 45.0%
AAGCCAGAGATTGTGAGAAG+TGG + chr6_1:47294840-47294859 Msa0886880:CDS 45.0%
GTTCCACTTCTCACAATCTC+TGG - chr6_1:47294846-47294865 None:intergenic 45.0%
!!! AATTTTTTTTAAATCTAAAT+TGG - chr6_1:47288209-47288228 None:intergenic 5.0%
!! TTAGATTTAAAAAAAATTTA+AGG + chr6_1:47288211-47288230 Msa0886880:intron 5.0%
!!! GAATTTAAAATTTATTTTTT+GGG - chr6_1:47289257-47289276 None:intergenic 5.0%
!!! TATTTTTAAAAGATTTTTTT+GGG - chr6_1:47290812-47290831 None:intergenic 5.0%
AGGCATGCATAGACCCTTGT+TGG + chr6_1:47286988-47287007 Msa0886880:CDS 50.0%
! TAGACCCTTGTTGGCTGTTC+AGG + chr6_1:47286997-47287016 Msa0886880:CDS 50.0%
AGTGATGTGGCCCAATGGTT+TGG - chr6_1:47288329-47288348 None:intergenic 50.0%
AACCAGCATAGCCGGTTAAC+CGG - chr6_1:47288381-47288400 None:intergenic 50.0%
TCTTTGGCCAGTTGGGTGTA+GGG - chr6_1:47288625-47288644 None:intergenic 50.0%
TTCTTTGGCCAGTTGGGTGT+AGG - chr6_1:47288626-47288645 None:intergenic 50.0%
TACACCCAACTGGCCAAAGA+AGG + chr6_1:47288625-47288644 Msa0886880:intron 50.0%
ACACCCAACTGGCCAAAGAA+GGG + chr6_1:47288626-47288645 Msa0886880:intron 50.0%
TTTAAGGAAGGGGAAAGGGG+CGG + chr6_1:47288866-47288885 Msa0886880:intron 50.0%
GTGGTGTACGAGGCAATTGA+TGG + chr6_1:47288888-47288907 Msa0886880:intron 50.0%
! TACGAGGCAATTGATGGGTG+AGG + chr6_1:47288894-47288913 Msa0886880:intron 50.0%
! GCAATTGATGGGTGAGGTTG+AGG + chr6_1:47288900-47288919 Msa0886880:intron 50.0%
GTGAGGTTGAGGGATACTAG+CGG + chr6_1:47288911-47288930 Msa0886880:intron 50.0%
! TCTCTGGTTTCGGCATGGTT+AGG - chr6_1:47289920-47289939 None:intergenic 50.0%
! TATGGTCTCTGGTTTCGGCA+TGG - chr6_1:47289925-47289944 None:intergenic 50.0%
! GTCTTGAGGATGACTCGGAA+AGG - chr6_1:47290153-47290172 None:intergenic 50.0%
TCGTTTGTTTGCTTGGGAGG+AGG - chr6_1:47290305-47290324 None:intergenic 50.0%
ACGTCGTTTGTTTGCTTGGG+AGG - chr6_1:47290308-47290327 None:intergenic 50.0%
GCGACGTCGTTTGTTTGCTT+GGG - chr6_1:47290311-47290330 None:intergenic 50.0%
ATTCGTCGAGTGGTTGGAGA+TGG - chr6_1:47290487-47290506 None:intergenic 50.0%
GGTAACATTCGTCGAGTGGT+TGG - chr6_1:47290493-47290512 None:intergenic 50.0%
TGAGGGTAACATTCGTCGAG+TGG - chr6_1:47290497-47290516 None:intergenic 50.0%
!! GGGTGTAGGGAATTGGTTTG+AGG - chr6_1:47290515-47290534 None:intergenic 50.0%
! TTGGTGAGGGTGTAGGGAAT+TGG - chr6_1:47290522-47290541 None:intergenic 50.0%
GCAGACTTAGCTCGTTATGG+TGG - chr6_1:47290573-47290592 None:intergenic 50.0%
TGAAGAGGGTGGTCGTTTGA+GGG - chr6_1:47290602-47290621 None:intergenic 50.0%
GACCACCCTCTTCACCATAA+CGG + chr6_1:47290608-47290627 Msa0886880:intron 50.0%
ACCACCCTCTTCACCATAAC+GGG + chr6_1:47290609-47290628 Msa0886880:intron 50.0%
AAGGCCCGTTATGGTGAAGA+GGG - chr6_1:47290616-47290635 None:intergenic 50.0%
AAAGGCCCGTTATGGTGAAG+AGG - chr6_1:47290617-47290636 None:intergenic 50.0%
! TGTTGGGAAAGTGGTGTTGG+CGG - chr6_1:47290678-47290697 None:intergenic 50.0%
GTGTTCCTAAGGAGACTGGA+GGG - chr6_1:47290738-47290757 None:intergenic 50.0%
TGTGTTCCTAAGGAGACTGG+AGG - chr6_1:47290739-47290758 None:intergenic 50.0%
TTATGGAGTGGGCAGTCTTG+GGG - chr6_1:47291274-47291293 None:intergenic 50.0%
GTTATGGAGTGGGCAGTCTT+GGG - chr6_1:47291275-47291294 None:intergenic 50.0%
GCGCAGCTTTACAAGGGTTA+TGG - chr6_1:47291291-47291310 None:intergenic 50.0%
GTGACTGCGCAGCTTTACAA+GGG - chr6_1:47291297-47291316 None:intergenic 50.0%
ATCCACTTGCGCCACAAAGT+TGG + chr6_1:47291474-47291493 Msa0886880:intron 50.0%
TCCACTTGCGCCACAAAGTT+GGG + chr6_1:47291475-47291494 Msa0886880:intron 50.0%
CAACCGCTTCATTGGCAATG+AGG + chr6_1:47291610-47291629 Msa0886880:intron 50.0%
TAATGTACCAAGGCCAGGAG+TGG - chr6_1:47292060-47292079 None:intergenic 50.0%
CGAAGGGGTTCACAACATCA+GGG - chr6_1:47292123-47292142 None:intergenic 50.0%
TCGAAGGGGTTCACAACATC+AGG - chr6_1:47292124-47292143 None:intergenic 50.0%
CAAAACATATCCACCCCACC+CGG + chr6_1:47292481-47292500 Msa0886880:intron 50.0%
!!! AAGTGTTGGGCCGATTTTCC+TGG - chr6_1:47292551-47292570 None:intergenic 50.0%
CAGAAAAATGGTGTGAGGCG+TGG - chr6_1:47292679-47292698 None:intergenic 50.0%
ACCAGTGAGAATGACCCTAC+CGG + chr6_1:47293009-47293028 Msa0886880:intron 50.0%
CAACCTTCGATAGGTGCTTC+TGG - chr6_1:47293112-47293131 None:intergenic 50.0%
TCTTCTCTTTGACCATCCGC+CGG + chr6_1:47293230-47293249 Msa0886880:intron 50.0%
CAGAGAAGAAGGTGGAAGTC+CGG - chr6_1:47293252-47293271 None:intergenic 50.0%
TTTGGGTGGAGCAGAGAAGA+AGG - chr6_1:47293263-47293282 None:intergenic 50.0%
TCCTTGATGGAACATCCACG+TGG + chr6_1:47294079-47294098 Msa0886880:CDS 50.0%
! TGAAGTCATGAAGTGCCACG+TGG - chr6_1:47294097-47294116 None:intergenic 50.0%
CGTGGCACTTCATGACTTCA+TGG + chr6_1:47294097-47294116 Msa0886880:CDS 50.0%
TCATGGGCCGAGATATGTAG+TGG + chr6_1:47294114-47294133 Msa0886880:CDS 50.0%
GGGTCCACCACTACATATCT+CGG - chr6_1:47294124-47294143 None:intergenic 50.0%
GAATGGTTGGGCTGTTGTGA+TGG - chr6_1:47294145-47294164 None:intergenic 50.0%
CACAACAGCCCAACCATTCT+TGG + chr6_1:47294146-47294165 Msa0886880:CDS 50.0%
! TTTGCCTCACCATTGGCTGA+TGG - chr6_1:47294285-47294304 None:intergenic 50.0%
ATCAGCCAATGGTGAGGCAA+AGG + chr6_1:47294284-47294303 Msa0886880:CDS 50.0%
!! TCACCTTTGACTGATGGTGG+GGG - chr6_1:47294324-47294343 None:intergenic 50.0%
! CTCACCTTTGACTGATGGTG+GGG - chr6_1:47294325-47294344 None:intergenic 50.0%
CCTCACCTTTGACTGATGGT+GGG - chr6_1:47294326-47294345 None:intergenic 50.0%
CTTGCCTCACCTTTGACTGA+TGG - chr6_1:47294330-47294349 None:intergenic 50.0%
CATCAGTCAAAGGTGAGGCA+AGG + chr6_1:47294328-47294347 Msa0886880:CDS 50.0%
TGAGGCAAGGCCCATACTTA+GGG + chr6_1:47294341-47294360 Msa0886880:CDS 50.0%
AACCAAACCCTTCCATCGGA+CGG + chr6_1:47294417-47294436 Msa0886880:CDS 50.0%
!! GTTTTGAACCGTCCGATGGA+AGG - chr6_1:47294428-47294447 None:intergenic 50.0%
!!! CGGGTTTTAGTTCACGTGCA+AGG - chr6_1:47294500-47294519 None:intergenic 50.0%
!! AAAGAAGCGCCGAATTGTGG+CGG - chr6_1:47294654-47294673 None:intergenic 50.0%
CGGCGCTTCTTTGATCCAAA+AGG + chr6_1:47294662-47294681 Msa0886880:CDS 50.0%
TTGTATCCAGGCAAGAGTGG+AGG + chr6_1:47294894-47294913 Msa0886880:CDS 50.0%
TGTATCCAGGCAAGAGTGGA+GGG + chr6_1:47294895-47294914 Msa0886880:CDS 50.0%
AACATTGGAGCCTGAGGCTA+TGG + chr6_1:47294938-47294957 Msa0886880:CDS 50.0%
ACATTGGAGCCTGAGGCTAT+GGG + chr6_1:47294939-47294958 Msa0886880:CDS 50.0%
GGGAAGGTTGGAGCAAGATA+AGG + chr6_1:47294959-47294978 Msa0886880:CDS 50.0%
AACCGGTTAACCGGCTATGC+TGG + chr6_1:47288376-47288395 Msa0886880:intron 55.0%
GCCCCTTTCCCCTTCCTTAA+AGG - chr6_1:47288867-47288886 None:intergenic 55.0%
AGGTTGAGGGATACTAGCGG+CGG + chr6_1:47288914-47288933 Msa0886880:intron 55.0%
GGCGACGTCGTTTGTTTGCT+TGG - chr6_1:47290312-47290331 None:intergenic 55.0%
TGCTATGGAACGAGGGGGTT+GGG - chr6_1:47290359-47290378 None:intergenic 55.0%
GGTTTGTACGGTCGCTGCTA+TGG - chr6_1:47290374-47290393 None:intergenic 55.0%
TGTAAGGTTAGAGGGGGGGT+TGG - chr6_1:47290541-47290560 None:intergenic 55.0%
GGGGCAGACTTAGCTCGTTA+TGG - chr6_1:47290576-47290595 None:intergenic 55.0%
GTGAAGAGGGTGGTCGTTTG+AGG - chr6_1:47290603-47290622 None:intergenic 55.0%
TAAGGAGACTGGAGGGTTGG+GGG - chr6_1:47290731-47290750 None:intergenic 55.0%
CTAAGGAGACTGGAGGGTTG+GGG - chr6_1:47290732-47290751 None:intergenic 55.0%
CCTAAGGAGACTGGAGGGTT+GGG - chr6_1:47290733-47290752 None:intergenic 55.0%
TCCTAAGGAGACTGGAGGGT+TGG - chr6_1:47290734-47290753 None:intergenic 55.0%
GGTTATGGAGTGGGCAGTCT+TGG - chr6_1:47291276-47291295 None:intergenic 55.0%
GGTGACTGCGCAGCTTTACA+AGG - chr6_1:47291298-47291317 None:intergenic 55.0%
TGGAGAGGGGATTGCGTCAA+GGG - chr6_1:47291386-47291405 None:intergenic 55.0%
ATGGAGAGGGGATTGCGTCA+AGG - chr6_1:47291387-47291406 None:intergenic 55.0%
TCCCAACTTTGTGGCGCAAG+TGG - chr6_1:47291479-47291498 None:intergenic 55.0%
! GGACCGGATGGTGTCAACTT+TGG - chr6_1:47291924-47291943 None:intergenic 55.0%
TTCTGTGGAGGAGGTCAAGC+AGG - chr6_1:47291979-47291998 None:intergenic 55.0%
TCTTTGCAAGTGACCGGGTG+GGG - chr6_1:47292497-47292516 None:intergenic 55.0%
CTCTTTGCAAGTGACCGGGT+GGG - chr6_1:47292498-47292517 None:intergenic 55.0%
TGGCGCTCTTTGCAAGTGAC+CGG - chr6_1:47292503-47292522 None:intergenic 55.0%
TAAGGGACGAGGTCCCCAAT+TGG + chr6_1:47292580-47292599 Msa0886880:intron 55.0%
TGGGGAGGAGAGAAAGGGAA+GGG - chr6_1:47292849-47292868 None:intergenic 55.0%
ATGGGGAGGAGAGAAAGGGA+AGG - chr6_1:47292850-47292869 None:intergenic 55.0%
CGGTATGGGGAGGAGAGAAA+GGG - chr6_1:47292854-47292873 None:intergenic 55.0%
TCGGTATGGGGAGGAGAGAA+AGG - chr6_1:47292855-47292874 None:intergenic 55.0%
ACCGGTAGGGTCATTCTCAC+TGG - chr6_1:47293013-47293032 None:intergenic 55.0%
CCTTCGATAGGTGCTTCTGG+AGG - chr6_1:47293109-47293128 None:intergenic 55.0%
!! CCTCCAGAAGCACCTATCGA+AGG + chr6_1:47293106-47293125 Msa0886880:intron 55.0%
AGAAGAAGGTGGAAGTCCGG+CGG - chr6_1:47293249-47293268 None:intergenic 55.0%
!! AGATGGGCTAGCAATGGGCT+TGG + chr6_1:47294041-47294060 Msa0886880:CDS 55.0%
GCCACGTGGATGTTCCATCA+AGG - chr6_1:47294083-47294102 None:intergenic 55.0%
TGGGCCGAGATATGTAGTGG+TGG + chr6_1:47294117-47294136 Msa0886880:CDS 55.0%
!! CACCATTGGCTGATGGTGGT+GGG - chr6_1:47294233-47294252 None:intergenic 55.0%
!! TCACCATTGGCTGATGGTGG+TGG - chr6_1:47294234-47294253 None:intergenic 55.0%
ACCACCATCAGCCAATGGTG+AGG + chr6_1:47294233-47294252 Msa0886880:CDS 55.0%
! ACCTCACCATTGGCTGATGG+TGG - chr6_1:47294237-47294256 None:intergenic 55.0%
! CACCATTGGCTGATGGTGCT+GGG - chr6_1:47294278-47294297 None:intergenic 55.0%
! TCACCATTGGCTGATGGTGC+TGG - chr6_1:47294279-47294298 None:intergenic 55.0%
AGCACCATCAGCCAATGGTG+AGG + chr6_1:47294278-47294297 Msa0886880:CDS 55.0%
GAGGCAAAGGTTGAACCCGA+AGG + chr6_1:47294297-47294316 Msa0886880:CDS 55.0%
CCCACCATCAGTCAAAGGTG+AGG + chr6_1:47294323-47294342 Msa0886880:CDS 55.0%
GCCTCACCTTTGACTGATGG+TGG - chr6_1:47294327-47294346 None:intergenic 55.0%
GTGAGGCAAGGCCCATACTT+AGG + chr6_1:47294340-47294359 Msa0886880:CDS 55.0%
AACCGTCCGATGGAAGGGTT+TGG - chr6_1:47294422-47294441 None:intergenic 55.0%
CACGTGGCGCCAAATATGAG+TGG - chr6_1:47294475-47294494 None:intergenic 55.0%
! AAGTATGCCTCCGGCATTGG+CGG - chr6_1:47294573-47294592 None:intergenic 55.0%
CCAAAGTATGCCTCCGGCAT+TGG - chr6_1:47294576-47294595 None:intergenic 55.0%
! CCAATGCCGGAGGCATACTT+TGG + chr6_1:47294573-47294592 Msa0886880:CDS 55.0%
ATATTCACCGTCACGGCTGC+TGG + chr6_1:47294612-47294631 Msa0886880:CDS 55.0%
TATTCACCGTCACGGCTGCT+GGG + chr6_1:47294613-47294632 Msa0886880:CDS 55.0%
!! AAGAAGCGCCGAATTGTGGC+GGG - chr6_1:47294653-47294672 None:intergenic 55.0%
TCCAACCTTCCCATAGCCTC+AGG - chr6_1:47294951-47294970 None:intergenic 55.0%
TGGACCCTCGACCCAGTTCA+TGG - chr6_1:47290211-47290230 None:intergenic 60.0%
! GGAAGTTGGAGGAGGAGCGT+GGG - chr6_1:47290338-47290357 None:intergenic 60.0%
GAACGAGGGGGTTGGGAAGT+TGG - chr6_1:47290352-47290371 None:intergenic 60.0%
CTGCTATGGAACGAGGGGGT+TGG - chr6_1:47290360-47290379 None:intergenic 60.0%
GTCGCTGCTATGGAACGAGG+GGG - chr6_1:47290364-47290383 None:intergenic 60.0%
GGTCGCTGCTATGGAACGAG+GGG - chr6_1:47290365-47290384 None:intergenic 60.0%
CGGTCGCTGCTATGGAACGA+GGG - chr6_1:47290366-47290385 None:intergenic 60.0%
ACGGTCGCTGCTATGGAACG+AGG - chr6_1:47290367-47290386 None:intergenic 60.0%
GCGGTCTCTCCCCTATCCAA+TGG + chr6_1:47290437-47290456 Msa0886880:intron 60.0%
!! GTTAGAGGGGGGGTTGGTGA+GGG - chr6_1:47290535-47290554 None:intergenic 60.0%
AGGGTGGTCGTTTGAGGGAG+GGG - chr6_1:47290597-47290616 None:intergenic 60.0%
GAGGGTGGTCGTTTGAGGGA+GGG - chr6_1:47290598-47290617 None:intergenic 60.0%
AGAGGGTGGTCGTTTGAGGG+AGG - chr6_1:47290599-47290618 None:intergenic 60.0%
GCCCGTTATGGTGAAGAGGG+TGG - chr6_1:47290613-47290632 None:intergenic 60.0%
AGACTGGAGGGTTGGGGGTA+AGG - chr6_1:47290726-47290745 None:intergenic 60.0%
CCCAACCCTCCAGTCTCCTT+AGG + chr6_1:47290730-47290749 Msa0886880:intron 60.0%
TTGGTTGTCAGAGGCGGCGT+TGG - chr6_1:47291082-47291101 None:intergenic 60.0%
GGAGAGGGGATTGCGTCAAG+GGG - chr6_1:47291385-47291404 None:intergenic 60.0%
GGAGGTCAAGCAGGCGGTTT+GGG - chr6_1:47291970-47291989 None:intergenic 60.0%
AGGAGGTCAAGCAGGCGGTT+TGG - chr6_1:47291971-47291990 None:intergenic 60.0%
TGTGGAGGAGGTCAAGCAGG+CGG - chr6_1:47291976-47291995 None:intergenic 60.0%
AGATCTGCCACTCCTGGCCT+TGG + chr6_1:47292050-47292069 Msa0886880:intron 60.0%
GCTCTTTGCAAGTGACCGGG+TGG - chr6_1:47292499-47292518 None:intergenic 60.0%
GGCGCTCTTTGCAAGTGACC+GGG - chr6_1:47292502-47292521 None:intergenic 60.0%
GGGGAGGAGAGAAAGGGAAG+GGG - chr6_1:47292848-47292867 None:intergenic 60.0%
GGGTGGAGCAGAGAAGAAGG+TGG - chr6_1:47293260-47293279 None:intergenic 60.0%
CACACGTGTGTTTCGGGCCT+TGG - chr6_1:47294178-47294197 None:intergenic 60.0%
!! GCTGATGGTGGTGGGCCTTT+GGG - chr6_1:47294225-47294244 None:intergenic 60.0%
!! ACTGATGGTGGGGGACCTTC+GGG - chr6_1:47294315-47294334 None:intergenic 60.0%
!! GACTGATGGTGGGGGACCTT+CGG - chr6_1:47294316-47294335 None:intergenic 60.0%
GGTCCCCCACCATCAGTCAA+AGG + chr6_1:47294318-47294337 Msa0886880:CDS 60.0%
GTTCACGTGCAAGGCTCACG+TGG - chr6_1:47294491-47294510 None:intergenic 60.0%
ACGAGTGAACCCGCCAATGC+CGG + chr6_1:47294560-47294579 Msa0886880:CDS 60.0%
!! AGTATGCCTCCGGCATTGGC+GGG - chr6_1:47294572-47294591 None:intergenic 60.0%
CAAAAGCCCAGCAGCCGTGA+CGG - chr6_1:47294622-47294641 None:intergenic 60.0%
ATCCAGGCAAGAGTGGAGGG+AGG + chr6_1:47294898-47294917 Msa0886880:CDS 60.0%
TGGAGCCTGAGGCTATGGGA+AGG + chr6_1:47294943-47294962 Msa0886880:CDS 60.0%
GCCTGAGGCTATGGGAAGGT+TGG + chr6_1:47294947-47294966 Msa0886880:CDS 60.0%
AAGGAAGGGGAAAGGGGCGG+TGG + chr6_1:47288869-47288888 Msa0886880:intron 65.0%
GAAAGGGGCGGTGGTGTACG+AGG + chr6_1:47288878-47288897 Msa0886880:intron 65.0%
! TTGGAGGAGGAGCGTGGGTG+TGG - chr6_1:47290333-47290352 None:intergenic 65.0%
GGGAAGTTGGAGGAGGAGCG+TGG - chr6_1:47290339-47290358 None:intergenic 65.0%
GGGGGTTGGGAAGTTGGAGG+AGG - chr6_1:47290346-47290365 None:intergenic 65.0%
CGAGGGGGTTGGGAAGTTGG+AGG - chr6_1:47290349-47290368 None:intergenic 65.0%
!! GGGGGGTTGGTGAGGGTGTA+GGG - chr6_1:47290528-47290547 None:intergenic 65.0%
!! GGTTAGAGGGGGGGTTGGTG+AGG - chr6_1:47290536-47290555 None:intergenic 65.0%
GGTGGTCGTTTGAGGGAGGG+GGG - chr6_1:47290595-47290614 None:intergenic 65.0%
GGGTGGTCGTTTGAGGGAGG+GGG - chr6_1:47290596-47290615 None:intergenic 65.0%
TGGGCAGTCTTGGGGAGGTG+AGG - chr6_1:47291266-47291285 None:intergenic 65.0%
TGGAGTGGGCAGTCTTGGGG+AGG - chr6_1:47291271-47291290 None:intergenic 65.0%
TTGCAAGTGACCGGGTGGGG+TGG - chr6_1:47292494-47292513 None:intergenic 65.0%
GAAGGTGGAAGTCCGGCGGA+TGG - chr6_1:47293245-47293264 None:intergenic 65.0%
CTTTGGGCTCGGGTAGGGAG+AGG - chr6_1:47294209-47294228 None:intergenic 65.0%
CTCTCCCTACCCGAGCCCAA+AGG + chr6_1:47294207-47294226 Msa0886880:CDS 65.0%
TGGGCCTTTGGGCTCGGGTA+GGG - chr6_1:47294214-47294233 None:intergenic 65.0%
!! TGGTGGTGGGCCTTTGGGCT+CGG - chr6_1:47294220-47294239 None:intergenic 65.0%
!! GGCTGATGGTGGTGGGCCTT+TGG - chr6_1:47294226-47294245 None:intergenic 65.0%
GGCCCACCACCATCAGCCAA+TGG + chr6_1:47294228-47294247 Msa0886880:CDS 65.0%
GGCCCAGCACCATCAGCCAA+TGG + chr6_1:47294273-47294292 Msa0886880:CDS 65.0%
AGTGAACCCGCCAATGCCGG+AGG + chr6_1:47294563-47294582 Msa0886880:CDS 65.0%
! CGTCACGGCTGCTGGGCTTT+TGG + chr6_1:47294620-47294639 Msa0886880:CDS 65.0%
! CACGGCTGCTGGGCTTTTGG+CGG + chr6_1:47294623-47294642 Msa0886880:CDS 65.0%
GCGGCTCACCCGCCACAATT+CGG + chr6_1:47294642-47294661 Msa0886880:CDS 65.0%
CTCCTCCCTCCACTCTTGCC+TGG - chr6_1:47294903-47294922 None:intergenic 65.0%
!! GGGGGGGTTGGTGAGGGTGT+AGG - chr6_1:47290529-47290548 None:intergenic 70.0%
GTGGGCCTTTGGGCTCGGGT+AGG - chr6_1:47294215-47294234 None:intergenic 70.0%
!! GGTGGTGGGCCTTTGGGCTC+GGG - chr6_1:47294219-47294238 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 47286446 47295271 47286446 ID=Msa0886880;Name=Msa0886880
chr6_1 mRNA 47286446 47295271 47286446 ID=Msa0886880-mRNA-1;Parent=Msa0886880;Name=Msa0886880-mRNA-1;_AED=0.00;_eAED=0.00;_QI=24|1|1|1|1|1|2|270|507
chr6_1 exon 47286446 47287018 47286446 ID=Msa0886880-mRNA-1:exon:9948;Parent=Msa0886880-mRNA-1
chr6_1 exon 47294027 47295271 47294027 ID=Msa0886880-mRNA-1:exon:9949;Parent=Msa0886880-mRNA-1
chr6_1 five_prime_UTR 47286446 47286469 47286446 ID=Msa0886880-mRNA-1:five_prime_utr;Parent=Msa0886880-mRNA-1
chr6_1 CDS 47286470 47287018 47286470 ID=Msa0886880-mRNA-1:cds;Parent=Msa0886880-mRNA-1
chr6_1 CDS 47294027 47295001 47294027 ID=Msa0886880-mRNA-1:cds;Parent=Msa0886880-mRNA-1
chr6_1 three_prime_UTR 47295002 47295271 47295002 ID=Msa0886880-mRNA-1:three_prime_utr;Parent=Msa0886880-mRNA-1
Gene Sequence

>Msa0886880

ATGCCAACAACACTTTTCTATAAGAATCCTCAAAAATCACATCTCACACACAAATCAAACAAATTCCAAGAAAAACTTCTTAAAATTTCATTCAACAAAATGTCAAGTGAAATAGTCAAGAAAGAAGAATCTCTAAATGTGAAAATCACTAGCAAAAGCTATGTGAAACCTGAGGAAAAAATTGGGAAAAAGGAGTATCAATTGGTCACATTTGACCTACCTTACTTAGCTTTTTACTACAACCAAAAATTAATTTTTTACAAAGGAGGTAACTTTGAAGAAAATGTTGAGAAACTCAAAAATGGGCTTAGTGTAGTTTTGAAGGAGTTTCATCAACTAGCTGGTAAATTAGGTAAAGATGAAGAGGGTGTGTTTTTTGTTGAATATGATGATGACTTGGTTGGTGTTGAAGTTGTTGAAGCTGTTGCTGATGAGATTGGTGTTGAAGATCTAACTGTTGCTGAAAGTAGTGCCATTTTGAAGGAATTGATTCCTTATAGTGGAATCTTGAATTTGGAAGGCATGCATAGACCCTTGTTGGCTGTTCAGCTAACAAAGCTTAAAGATGGGCTAGCAATGGGCTTGGCTTTTAACCATGCTGTCCTTGATGGAACATCCACGTGGCACTTCATGACTTCATGGGCCGAGATATGTAGTGGTGGACCCATCACAACAGCCCAACCATTCTTGGAAAGAACCAAGGCCCGAAACACACGTGTGAAGCTTGACCTCTCCCTACCCGAGCCCAAAGGCCCACCACCATCAGCCAATGGTGAGGTAAAGGATGAACAAAATGGCCCAGCACCATCAGCCAATGGTGAGGCAAAGGTTGAACCCGAAGGTCCCCCACCATCAGTCAAAGGTGAGGCAAGGCCCATACTTAGGGAAAAAATCTTCAAATTTTCCGAGTCAGCCATCGACAAAATCAAGTCAACAGTCAACCAAACCCTTCCATCGGACGGTTCAAAACCATTCTCAACTTTCCAGGCTCTCTCCACTCATATTTGGCGCCACGTGAGCCTTGCACGTGAACTAAAACCCGAAGACTACACAGTGTTCACAGTCTTCGCAGACTGTAGAAAACGAGTGAACCCGCCAATGCCGGAGGCATACTTTGGAAACCTAATTCAAGCTATATTCACCGTCACGGCTGCTGGGCTTTTGGCGGCTCACCCGCCACAATTCGGCGCTTCTTTGATCCAAAAGGTAATTGAAGGCCATGATGCTAAAGCTATTGATGAACGTAACAAAGAGTGGGAGAGTGCACCCAAGATTTTTCAATTCAAAGATGCTGGTGTGAATTGTGTTGCAGTTGGAAGTTCACCTAGGTTTAAGGTTTATGACATTGATTTTGGATTTGGGAAGCCAGAGATTGTGAGAAGTGGAACCAACAACAAATTTGATGGGATGATTTATTTGTATCCAGGCAAGAGTGGAGGGAGGAGCATTGATGTTGAATTAACATTGGAGCCTGAGGCTATGGGAAGGTTGGAGCAAGATAAGGAATTTCTTATGGAAGTATAA
Protein sequence

>Msa0886880

MPTTLFYKNPQKSHLTHKSNKFQEKLLKISFNKMSSEIVKKEESLNVKITSKSYVKPEEKIGKKEYQLVTFDLPYLAFYYNQKLIFYKGGNFEENVEKLKNGLSVVLKEFHQLAGKLGKDEEGVFFVEYDDDLVGVEVVEAVADEIGVEDLTVAESSAILKELIPYSGILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTSTWHFMTSWAEICSGGPITTAQPFLERTKARNTRVKLDLSLPEPKGPPPSANGEVKDEQNGPAPSANGEAKVEPEGPPPSVKGEARPILREKIFKFSESAIDKIKSTVNQTLPSDGSKPFSTFQALSTHIWRHVSLARELKPEDYTVFTVFADCRKRVNPPMPEAYFGNLIQAIFTVTAAGLLAAHPPQFGASLIQKVIEGHDAKAIDERNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGFGKPEIVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMGRLEQDKEFLMEV*