Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226840 | XP_013443805.1 | 88.690 | 168 | 9 | 1 | 1 | 158 | 1 | 168 | 1.99e-98 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616510 | Msa1226840 | 0.831438 | 1.668931e-55 | -8.615850e-47 |
| Msa0699840 | Msa1226840 | 0.838740 | 2.403256e-57 | -8.615850e-47 |
| Msa0164400 | Msa1226840 | 0.812827 | 3.485960e-51 | -8.615850e-47 |
| Msa0191020 | Msa1226840 | 0.810021 | 1.417472e-50 | -8.615850e-47 |
| Msa0194820 | Msa1226840 | 0.818679 | 1.728645e-52 | -8.615850e-47 |
| Msa0194840 | Msa1226840 | 0.814264 | 1.683607e-51 | -8.615850e-47 |
| Msa0233320 | Msa1226840 | 0.811523 | 6.709006e-51 | -8.615850e-47 |
| Msa1226840 | Msa1228390 | 0.888128 | 7.769060e-73 | -8.615850e-47 |
| Msa1226840 | Msa1228420 | 0.907450 | 5.001857e-81 | -8.615850e-47 |
| Msa1226840 | Msa1341890 | 0.832426 | 9.517047e-56 | -8.615850e-47 |
| Msa1226840 | Msa1405340 | 0.907525 | 4.613527e-81 | -8.615850e-47 |
| Msa0388770 | Msa1226840 | 0.824473 | 7.919247e-54 | -8.615850e-47 |
| Msa1020630 | Msa1226840 | 0.828707 | 7.742370e-55 | -8.615850e-47 |
| Msa1113800 | Msa1226840 | 0.821901 | 3.156079e-53 | -8.615850e-47 |
| Msa1160500 | Msa1226840 | 0.806539 | 7.830344e-50 | -8.615850e-47 |
| Msa1183980 | Msa1226840 | 0.909067 | 8.576812e-82 | -8.615850e-47 |
| Msa0562620 | Msa1226840 | 0.842108 | 3.162904e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226840 | MtrunA17_Chr8g0335231 | 88.690 | 168 | 9 | 1 | 1 | 158 | 1 | 168 | 1.83e-102 | 291 |
| Msa1226840 | MtrunA17_Chr4g0052031 | 50.400 | 125 | 52 | 4 | 34 | 150 | 86 | 208 | 8.21e-32 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1226840 | AT4G37445.1 | 49.686 | 159 | 69 | 2 | 6 | 153 | 3 | 161 | 2.43e-46 | 149 |
| Msa1226840 | AT4G37445.2 | 50.694 | 144 | 61 | 1 | 20 | 153 | 2 | 145 | 1.61e-43 | 141 |
Find 30 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAAGTGAAAATTAAAT+AGG | 0.234371 | 8_2:-1860142 | None:intergenic |
| TATATACACAAATATATATT+TGG | 0.268577 | 8_2:+1858998 | Msa1226840:five_prime_UTR |
| CATTGATTTCATGATCAATA+AGG | 0.282087 | 8_2:+1859913 | Msa1226840:CDS |
| TACCATCACACAAGAAATTA+AGG | 0.290774 | 8_2:+1859835 | Msa1226840:intron |
| TTTCTTCAATGACATACTTT+TGG | 0.319686 | 8_2:-1860113 | None:intergenic |
| GATGATTCTATGATGATAAC+TGG | 0.356747 | 8_2:+1859953 | Msa1226840:CDS |
| CAGACATTAGATCTTGTATC+AGG | 0.382635 | 8_2:+1859251 | Msa1226840:CDS |
| CTGATACAAGATCTAATGTC+TGG | 0.398337 | 8_2:-1859250 | None:intergenic |
| ATGAGTTACATGGGAGGATC+AGG | 0.435033 | 8_2:+1859073 | Msa1226840:CDS |
| TATGATGATAACTGGAATAG+TGG | 0.452300 | 8_2:+1859961 | Msa1226840:CDS |
| GCTATGGTAGCTAAGAGAAC+AGG | 0.456395 | 8_2:+1859995 | Msa1226840:CDS |
| CTCTTAGCTACCATAGCTGC+TGG | 0.471596 | 8_2:-1859989 | None:intergenic |
| ATGTTTCTTCTTATCTTCCT+CGG | 0.474190 | 8_2:-1859885 | None:intergenic |
| ACTATTAACATGGCCTTGCC+TGG | 0.488789 | 8_2:+1859798 | Msa1226840:CDS |
| ATCATAATGCTTACCAGGCA+AGG | 0.514482 | 8_2:-1859811 | None:intergenic |
| GAGCTAAAATAGTAGCTGTT+GGG | 0.514762 | 8_2:-1860072 | None:intergenic |
| GTTGGGACAAAGATAACATC+AGG | 0.516476 | 8_2:-1860055 | None:intergenic |
| ATCAAGAATGGCAGTGTGGA+AGG | 0.518421 | 8_2:-1859321 | None:intergenic |
| AGAGCTAAAATAGTAGCTGT+TGG | 0.518631 | 8_2:-1860073 | None:intergenic |
| AGTGGCACCTCCAGCAGCTA+TGG | 0.520301 | 8_2:+1859979 | Msa1226840:CDS |
| TTACTTGAAGATATCAAGAA+TGG | 0.537162 | 8_2:-1859333 | None:intergenic |
| GGGGATGATCATGAGTTACA+TGG | 0.552167 | 8_2:+1859063 | Msa1226840:CDS |
| GACAAAGATAACATCAGGAA+TGG | 0.591291 | 8_2:-1860050 | None:intergenic |
| TGATACAAGATCTAATGTCT+GGG | 0.602501 | 8_2:-1859249 | None:intergenic |
| TTAGCTACCATAGCTGCTGG+AGG | 0.629958 | 8_2:-1859986 | None:intergenic |
| GCTTTCATAACACTTAGTTG+AGG | 0.635041 | 8_2:-1860028 | None:intergenic |
| GGGATGATCATGAGTTACAT+GGG | 0.647259 | 8_2:+1859064 | Msa1226840:CDS |
| AAACTGGAATAAAACATCCG+AGG | 0.684088 | 8_2:+1859868 | Msa1226840:CDS |
| AGATATCAAGAATGGCAGTG+TGG | 0.711163 | 8_2:-1859325 | None:intergenic |
| ATGATCATGAGTTACATGGG+AGG | 0.727517 | 8_2:+1859067 | Msa1226840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_2:1858983-1859002 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_2:1858998-1859017 | Msa1226840:five_prime_UTR | 10.0% |
| !! | AATAAAAAAAAAAAAACTAG+TGG | - | chr8_2:1859130-1859149 | None:intergenic | 10.0% |
| !! | ACTTGTAAAAAAAAAAAAAA+AGG | + | chr8_2:1859389-1859408 | Msa1226840:intron | 10.0% |
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_2:1858983-1859002 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_2:1858998-1859017 | Msa1226840:five_prime_UTR | 10.0% |
| !! | AATAAAAAAAAAAAAACTAG+TGG | - | chr8_2:1859130-1859149 | None:intergenic | 10.0% |
| !! | ACTTGTAAAAAAAAAAAAAA+AGG | + | chr8_2:1859389-1859408 | Msa1226840:intron | 10.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_2:1859043-1859062 | Msa1226840:exon | 15.0% |
| !!! | GTTTTTTTTTTTTTATTGCT+AGG | + | chr8_2:1859133-1859152 | Msa1226840:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_2:1859212-1859231 | Msa1226840:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_2:1859396-1859415 | Msa1226840:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_2:1859397-1859416 | Msa1226840:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_2:1859512-1859531 | Msa1226840:intron | 15.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_2:1859043-1859062 | Msa1226840:exon | 15.0% |
| !!! | GTTTTTTTTTTTTTATTGCT+AGG | + | chr8_2:1859133-1859152 | Msa1226840:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_2:1859212-1859231 | Msa1226840:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_2:1859396-1859415 | Msa1226840:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_2:1859397-1859416 | Msa1226840:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_2:1859512-1859531 | Msa1226840:intron | 15.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_2:1859042-1859061 | Msa1226840:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_2:1859044-1859063 | Msa1226840:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_2:1859121-1859140 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_2:1859398-1859417 | Msa1226840:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_2:1859453-1859472 | Msa1226840:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | chr8_2:1859733-1859752 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | chr8_2:1859735-1859754 | Msa1226840:intron | 20.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_2:1859042-1859061 | Msa1226840:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_2:1859044-1859063 | Msa1226840:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_2:1859121-1859140 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_2:1859398-1859417 | Msa1226840:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_2:1859453-1859472 | Msa1226840:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | chr8_2:1859733-1859752 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | chr8_2:1859735-1859754 | Msa1226840:intron | 20.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_2:1859010-1859029 | Msa1226840:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_2:1859336-1859355 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_2:1859518-1859537 | Msa1226840:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_2:1859529-1859548 | Msa1226840:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_2:1859621-1859640 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_2:1859672-1859691 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_2:1859673-1859692 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_2:1859788-1859807 | Msa1226840:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_2:1859913-1859932 | Msa1226840:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_2:1860116-1860135 | None:intergenic | 25.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_2:1859010-1859029 | Msa1226840:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_2:1859336-1859355 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_2:1859518-1859537 | Msa1226840:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_2:1859529-1859548 | Msa1226840:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_2:1859621-1859640 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_2:1859672-1859691 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_2:1859673-1859692 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_2:1859788-1859807 | Msa1226840:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_2:1859913-1859932 | Msa1226840:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_2:1860116-1860135 | None:intergenic | 25.0% |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_2:1858976-1858995 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_2:1859217-1859236 | Msa1226840:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_2:1859218-1859237 | Msa1226840:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_2:1859252-1859271 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_2:1859669-1859688 | Msa1226840:intron | 30.0% | |
| TACCATCACACAAGAAATTA+AGG | + | chr8_2:1859835-1859854 | Msa1226840:intron | 30.0% | |
| TTCCTTAATTTCTTGTGTGA+TGG | - | chr8_2:1859840-1859859 | None:intergenic | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_2:1859852-1859871 | Msa1226840:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_2:1859888-1859907 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_2:1859953-1859972 | Msa1226840:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_2:1859961-1859980 | Msa1226840:CDS | 30.0% | |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_2:1858976-1858995 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_2:1859217-1859236 | Msa1226840:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_2:1859218-1859237 | Msa1226840:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_2:1859252-1859271 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_2:1859669-1859688 | Msa1226840:intron | 30.0% | |
| TACCATCACACAAGAAATTA+AGG | + | chr8_2:1859835-1859854 | Msa1226840:intron | 30.0% | |
| TTCCTTAATTTCTTGTGTGA+TGG | - | chr8_2:1859840-1859859 | None:intergenic | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_2:1859852-1859871 | Msa1226840:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_2:1859888-1859907 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_2:1859953-1859972 | Msa1226840:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_2:1859961-1859980 | Msa1226840:CDS | 30.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_2:1859253-1859272 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_2:1859251-1859270 | Msa1226840:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_2:1859594-1859613 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_2:1859868-1859887 | Msa1226840:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_2:1860031-1860050 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_2:1860053-1860072 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_2:1860075-1860094 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_2:1860076-1860095 | None:intergenic | 35.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_2:1859253-1859272 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_2:1859251-1859270 | Msa1226840:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_2:1859594-1859613 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_2:1859868-1859887 | Msa1226840:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_2:1860031-1860050 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_2:1860053-1860072 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_2:1860075-1860094 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_2:1860076-1860095 | None:intergenic | 35.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_2:1859064-1859083 | Msa1226840:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_2:1859067-1859086 | Msa1226840:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_2:1859328-1859347 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_2:1859585-1859604 | Msa1226840:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_2:1859589-1859608 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_2:1859814-1859833 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_2:1859819-1859838 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_2:1860058-1860077 | None:intergenic | 40.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_2:1859064-1859083 | Msa1226840:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_2:1859067-1859086 | Msa1226840:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_2:1859328-1859347 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_2:1859585-1859604 | Msa1226840:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_2:1859589-1859608 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_2:1859814-1859833 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_2:1859819-1859838 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_2:1860058-1860077 | None:intergenic | 40.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_2:1859063-1859082 | Msa1226840:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_2:1859073-1859092 | Msa1226840:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_2:1859324-1859343 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_2:1859798-1859817 | Msa1226840:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_2:1859995-1860014 | Msa1226840:CDS | 45.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_2:1859063-1859082 | Msa1226840:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_2:1859073-1859092 | Msa1226840:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_2:1859324-1859343 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_2:1859798-1859817 | Msa1226840:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_2:1859995-1860014 | Msa1226840:CDS | 45.0% | |
| !!! | AAATATGAATATTATTTTAA+AGG | + | chr8_2:1859479-1859498 | Msa1226840:intron | 5.0% |
| !!! | AAATATGAATATTATTTTAA+AGG | + | chr8_2:1859479-1859498 | Msa1226840:intron | 5.0% |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_2:1859989-1860008 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_2:1859992-1860011 | None:intergenic | 50.0% | |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_2:1859989-1860008 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_2:1859992-1860011 | None:intergenic | 50.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_2:1859979-1859998 | Msa1226840:CDS | 60.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_2:1859979-1859998 | Msa1226840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 1858972 | 1860150 | 1858972 | ID=Msa1226840;Name=Msa1226840 |
| chr8_2 | mRNA | 1858972 | 1860150 | 1858972 | ID=Msa1226840-mRNA-1;Parent=Msa1226840;Name=Msa1226840-mRNA-1;_AED=0.16;_eAED=0.16;_QI=89|0.66|0.5|1|0.66|0.75|4|0|158 |
| chr8_2 | exon | 1858972 | 1859094 | 1858972 | ID=Msa1226840-mRNA-1:exon:334;Parent=Msa1226840-mRNA-1 |
| chr8_2 | exon | 1859234 | 1859351 | 1859234 | ID=Msa1226840-mRNA-1:exon:335;Parent=Msa1226840-mRNA-1 |
| chr8_2 | exon | 1859797 | 1859819 | 1859797 | ID=Msa1226840-mRNA-1:exon:336;Parent=Msa1226840-mRNA-1 |
| chr8_2 | exon | 1859849 | 1860150 | 1859849 | ID=Msa1226840-mRNA-1:exon:337;Parent=Msa1226840-mRNA-1 |
| chr8_2 | five_prime_UTR | 1858972 | 1859060 | 1858972 | ID=Msa1226840-mRNA-1:five_prime_utr;Parent=Msa1226840-mRNA-1 |
| chr8_2 | CDS | 1859061 | 1859094 | 1859061 | ID=Msa1226840-mRNA-1:cds;Parent=Msa1226840-mRNA-1 |
| chr8_2 | CDS | 1859234 | 1859351 | 1859234 | ID=Msa1226840-mRNA-1:cds;Parent=Msa1226840-mRNA-1 |
| chr8_2 | CDS | 1859797 | 1859819 | 1859797 | ID=Msa1226840-mRNA-1:cds;Parent=Msa1226840-mRNA-1 |
| chr8_2 | CDS | 1859849 | 1860150 | 1859849 | ID=Msa1226840-mRNA-1:cds;Parent=Msa1226840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
