Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405340 | XP_013443805.1 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 1.09e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405340 | I3SHZ2 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 5.18e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043290 | Msa1405340 | 0.851907 | 6.534282e-61 | -8.615850e-47 |
| Msa0616510 | Msa1405340 | 0.835536 | 1.584623e-56 | -8.615850e-47 |
| Msa0650750 | Msa1405340 | 0.802599 | 5.197579e-49 | -8.615850e-47 |
| Msa0699840 | Msa1405340 | 0.847998 | 8.106843e-60 | -8.615850e-47 |
| Msa0137210 | Msa1405340 | 0.808224 | 3.440293e-50 | -8.615850e-47 |
| Msa0164400 | Msa1405340 | 0.809691 | 1.669894e-50 | -8.615850e-47 |
| Msa0194820 | Msa1405340 | 0.809725 | 1.641967e-50 | -8.615850e-47 |
| Msa0194840 | Msa1405340 | 0.801012 | 1.100306e-48 | -8.615850e-47 |
| Msa1226840 | Msa1405340 | 0.907525 | 4.613527e-81 | -8.615850e-47 |
| Msa1228390 | Msa1405340 | 0.953817 | 1.186683e-111 | -8.615850e-47 |
| Msa1228420 | Msa1405340 | 0.999114 | 6.271365e-291 | -8.615850e-47 |
| Msa1341890 | Msa1405340 | 0.836919 | 7.054824e-57 | -8.615850e-47 |
| Msa0388770 | Msa1405340 | 0.800645 | 1.307845e-48 | -8.615850e-47 |
| Msa0418970 | Msa1405340 | 0.818850 | 1.580325e-52 | -8.615850e-47 |
| Msa0460550 | Msa1405340 | 0.805251 | 1.460948e-49 | -8.615850e-47 |
| Msa0471460 | Msa1405340 | 0.818483 | 1.915029e-52 | -8.615850e-47 |
| Msa1020630 | Msa1405340 | 0.803375 | 3.592986e-49 | -8.615850e-47 |
| Msa1183980 | Msa1405340 | 0.997321 | 1.665597e-240 | -8.615850e-47 |
| Msa0562620 | Msa1405340 | 0.850361 | 1.784672e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405340 | MtrunA17_Chr8g0335231 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 9.98e-115 | 322 |
| Msa1405340 | MtrunA17_Chr4g0052031 | 63.333 | 90 | 31 | 2 | 72 | 160 | 120 | 208 | 9.93e-32 | 115 |
| Msa1405340 | MtrunA17_Chr8g0337391 | 28.333 | 120 | 83 | 2 | 32 | 148 | 33 | 152 | 4.07e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405340 | AT4G37445.1 | 52.201 | 159 | 75 | 1 | 6 | 163 | 3 | 161 | 1.70e-54 | 170 |
| Msa1405340 | AT4G37445.2 | 53.472 | 144 | 67 | 0 | 20 | 163 | 2 | 145 | 1.21e-51 | 162 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAAGTGAAAATTAAAT+AGG | 0.234371 | tig0023127:-68585 | None:intergenic |
| TATATACACAAATATATATT+TGG | 0.268577 | tig0023127:+67441 | Msa1405340:five_prime_UTR |
| CATTGATTTCATGATCAATA+AGG | 0.282087 | tig0023127:+68356 | Msa1405340:CDS |
| TTTCTTGAATGACATTCTTT+TGG | 0.312655 | tig0023127:-68714 | None:intergenic |
| TTTCTTCAATGACATACTTT+TGG | 0.319686 | tig0023127:-68556 | None:intergenic |
| ACCATCACACAAGGAAATTA+AGG | 0.323749 | tig0023127:+68278 | Msa1405340:CDS |
| GATGATTCTATGATGATAAC+TGG | 0.356747 | tig0023127:+68396 | Msa1405340:CDS |
| CAGACATTAGATCTTGTATC+AGG | 0.382635 | tig0023127:+67692 | Msa1405340:CDS |
| CTTGTCCACTGATGTTAATA+AGG | 0.387576 | tig0023127:+68664 | Msa1405340:three_prime_UTR |
| CTGATACAAGATCTAATGTC+TGG | 0.398337 | tig0023127:-67691 | None:intergenic |
| ATAGCACAATTACAAGCAAT+TGG | 0.429151 | tig0023127:-68630 | None:intergenic |
| ATGAGTTACATGGGAGGATC+AGG | 0.435033 | tig0023127:+67516 | Msa1405340:CDS |
| TATGATGATAACTGGAATAG+TGG | 0.452300 | tig0023127:+68404 | Msa1405340:CDS |
| GCTATGGTAGCTAAGAGAAC+AGG | 0.456395 | tig0023127:+68438 | Msa1405340:CDS |
| CTCTTAGCTACCATAGCTGC+TGG | 0.471596 | tig0023127:-68432 | None:intergenic |
| ATGTTTCTTCTTATCTTCCT+CGG | 0.474190 | tig0023127:-68328 | None:intergenic |
| AGTGGCTCTTATTGCTGTAA+AGG | 0.481060 | tig0023127:+68688 | Msa1405340:three_prime_UTR |
| ACTATTAACATGGCCTTGCC+TGG | 0.488789 | tig0023127:+68240 | Msa1405340:CDS |
| TCCTTAATTTCCTTGTGTGA+TGG | 0.508644 | tig0023127:-68279 | None:intergenic |
| ATCATAATGCTTACCAGGCA+AGG | 0.514482 | tig0023127:-68253 | None:intergenic |
| GAGCTAAAATAGTAGCTGTT+GGG | 0.514762 | tig0023127:-68515 | None:intergenic |
| GTTGGGACAAAGATAACATC+AGG | 0.516476 | tig0023127:-68498 | None:intergenic |
| ATCAAGAATGGCAGTGTGGA+AGG | 0.518421 | tig0023127:-67762 | None:intergenic |
| AGAGCTAAAATAGTAGCTGT+TGG | 0.518631 | tig0023127:-68516 | None:intergenic |
| AGTGGCACCTCCAGCAGCTA+TGG | 0.520301 | tig0023127:+68422 | Msa1405340:CDS |
| TTACTTGAAGATATCAAGAA+TGG | 0.537162 | tig0023127:-67774 | None:intergenic |
| GGGGATGATCATGAGTTACA+TGG | 0.552167 | tig0023127:+67506 | Msa1405340:CDS |
| GGTACATCATAATGCTTACC+AGG | 0.555755 | tig0023127:-68258 | None:intergenic |
| CACTGATGTTAATAAGGCAG+TGG | 0.559465 | tig0023127:+68670 | Msa1405340:three_prime_UTR |
| GACAAAGATAACATCAGGAA+TGG | 0.591291 | tig0023127:-68493 | None:intergenic |
| TGATACAAGATCTAATGTCT+GGG | 0.602501 | tig0023127:-67690 | None:intergenic |
| CACTGCCTTATTAACATCAG+TGG | 0.624636 | tig0023127:-68669 | None:intergenic |
| TTAGCTACCATAGCTGCTGG+AGG | 0.629958 | tig0023127:-68429 | None:intergenic |
| GCTTTCATAACACTTAGTTG+AGG | 0.635041 | tig0023127:-68471 | None:intergenic |
| GGGATGATCATGAGTTACAT+GGG | 0.647259 | tig0023127:+67507 | Msa1405340:CDS |
| AAACTGGAATAAAACATCCG+AGG | 0.684088 | tig0023127:+68311 | Msa1405340:CDS |
| TTATGATGTACCATCACACA+AGG | 0.699802 | tig0023127:+68269 | Msa1405340:CDS |
| AGATATCAAGAATGGCAGTG+TGG | 0.711163 | tig0023127:-67766 | None:intergenic |
| ATGATCATGAGTTACATGGG+AGG | 0.727517 | tig0023127:+67510 | Msa1405340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | tig0023127:67426-67445 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | tig0023127:67441-67460 | Msa1405340:five_prime_UTR | 10.0% |
| !! | CTTGTAAAAAAAAAAAAAAA+AGG | + | tig0023127:67831-67850 | Msa1405340:intron | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | tig0023127:68588-68607 | None:intergenic | 10.0% |
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | tig0023127:67426-67445 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | tig0023127:67441-67460 | Msa1405340:five_prime_UTR | 10.0% |
| !! | CTTGTAAAAAAAAAAAAAAA+AGG | + | tig0023127:67831-67850 | Msa1405340:intron | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | tig0023127:68588-68607 | None:intergenic | 10.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | tig0023127:67486-67505 | Msa1405340:exon | 15.0% |
| !!! | TAGTTTTTTTTTTTATTGCT+AGG | + | tig0023127:67574-67593 | Msa1405340:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | tig0023127:67653-67672 | Msa1405340:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | tig0023127:67838-67857 | Msa1405340:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | tig0023127:67839-67858 | Msa1405340:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | tig0023127:67954-67973 | Msa1405340:intron | 15.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | tig0023127:67486-67505 | Msa1405340:exon | 15.0% |
| !!! | TAGTTTTTTTTTTTATTGCT+AGG | + | tig0023127:67574-67593 | Msa1405340:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | tig0023127:67653-67672 | Msa1405340:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | tig0023127:67838-67857 | Msa1405340:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | tig0023127:67839-67858 | Msa1405340:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | tig0023127:67954-67973 | Msa1405340:intron | 15.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | tig0023127:67485-67504 | Msa1405340:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | tig0023127:67487-67506 | Msa1405340:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | tig0023127:67564-67583 | None:intergenic | 20.0% |
| !! | GCAATAAAAAAAAAAACTAG+TGG | - | tig0023127:67573-67592 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | tig0023127:67840-67859 | Msa1405340:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | tig0023127:67895-67914 | Msa1405340:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | tig0023127:68175-68194 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | tig0023127:68177-68196 | Msa1405340:intron | 20.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | tig0023127:67485-67504 | Msa1405340:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | tig0023127:67487-67506 | Msa1405340:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | tig0023127:67564-67583 | None:intergenic | 20.0% |
| !! | GCAATAAAAAAAAAAACTAG+TGG | - | tig0023127:67573-67592 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | tig0023127:67840-67859 | Msa1405340:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | tig0023127:67895-67914 | Msa1405340:intron | 20.0% |
| !! | TTGATATCAAATGTTGAATA+TGG | - | tig0023127:68175-68194 | None:intergenic | 20.0% |
| !! | TTCAACATTTGATATCAATT+TGG | + | tig0023127:68177-68196 | Msa1405340:intron | 20.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | tig0023127:67453-67472 | Msa1405340:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | tig0023127:67777-67796 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | tig0023127:67960-67979 | Msa1405340:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | tig0023127:67971-67990 | Msa1405340:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | tig0023127:68063-68082 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | tig0023127:68114-68133 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | tig0023127:68115-68134 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | tig0023127:68230-68249 | Msa1405340:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | tig0023127:68356-68375 | Msa1405340:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | tig0023127:68559-68578 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | tig0023127:68717-68736 | None:intergenic | 25.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | tig0023127:67453-67472 | Msa1405340:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | tig0023127:67777-67796 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | tig0023127:67960-67979 | Msa1405340:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | tig0023127:67971-67990 | Msa1405340:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | tig0023127:68063-68082 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | tig0023127:68114-68133 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | tig0023127:68115-68134 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | tig0023127:68230-68249 | Msa1405340:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | tig0023127:68356-68375 | Msa1405340:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | tig0023127:68559-68578 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | tig0023127:68717-68736 | None:intergenic | 25.0% |
| TTAAGAAAAAATGTGGACCT+AGG | - | tig0023127:67419-67438 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | tig0023127:67658-67677 | Msa1405340:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | tig0023127:67659-67678 | Msa1405340:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | tig0023127:67693-67712 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | tig0023127:68111-68130 | Msa1405340:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | tig0023127:68295-68314 | Msa1405340:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | tig0023127:68331-68350 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | tig0023127:68396-68415 | Msa1405340:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | tig0023127:68404-68423 | Msa1405340:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | tig0023127:68633-68652 | None:intergenic | 30.0% | |
| TTAAGAAAAAATGTGGACCT+AGG | - | tig0023127:67419-67438 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | tig0023127:67658-67677 | Msa1405340:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | tig0023127:67659-67678 | Msa1405340:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | tig0023127:67693-67712 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | tig0023127:68111-68130 | Msa1405340:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | tig0023127:68295-68314 | Msa1405340:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | tig0023127:68331-68350 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | tig0023127:68396-68415 | Msa1405340:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | tig0023127:68404-68423 | Msa1405340:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | tig0023127:68633-68652 | None:intergenic | 30.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | tig0023127:67694-67713 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | tig0023127:67692-67711 | Msa1405340:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | tig0023127:68036-68055 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | tig0023127:68269-68288 | Msa1405340:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | tig0023127:68278-68297 | Msa1405340:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | tig0023127:68282-68301 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | tig0023127:68311-68330 | Msa1405340:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | tig0023127:68474-68493 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | tig0023127:68496-68515 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | tig0023127:68518-68537 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | tig0023127:68519-68538 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | tig0023127:68664-68683 | Msa1405340:three_prime_UTR | 35.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | tig0023127:67694-67713 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | tig0023127:67692-67711 | Msa1405340:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | tig0023127:68036-68055 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | tig0023127:68269-68288 | Msa1405340:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | tig0023127:68278-68297 | Msa1405340:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | tig0023127:68282-68301 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | tig0023127:68311-68330 | Msa1405340:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | tig0023127:68474-68493 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | tig0023127:68496-68515 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | tig0023127:68518-68537 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | tig0023127:68519-68538 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | tig0023127:68664-68683 | Msa1405340:three_prime_UTR | 35.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | tig0023127:67507-67526 | Msa1405340:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | tig0023127:67510-67529 | Msa1405340:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | tig0023127:67769-67788 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | tig0023127:68027-68046 | Msa1405340:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | tig0023127:68031-68050 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | tig0023127:68256-68275 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | tig0023127:68261-68280 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | tig0023127:68501-68520 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | tig0023127:68672-68691 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | tig0023127:68670-68689 | Msa1405340:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | tig0023127:68688-68707 | Msa1405340:three_prime_UTR | 40.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | tig0023127:67507-67526 | Msa1405340:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | tig0023127:67510-67529 | Msa1405340:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | tig0023127:67769-67788 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | tig0023127:68027-68046 | Msa1405340:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | tig0023127:68031-68050 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | tig0023127:68256-68275 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | tig0023127:68261-68280 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | tig0023127:68501-68520 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | tig0023127:68672-68691 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | tig0023127:68670-68689 | Msa1405340:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | tig0023127:68688-68707 | Msa1405340:three_prime_UTR | 40.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | tig0023127:67506-67525 | Msa1405340:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | tig0023127:67516-67535 | Msa1405340:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | tig0023127:67765-67784 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | tig0023127:68240-68259 | Msa1405340:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | tig0023127:68438-68457 | Msa1405340:CDS | 45.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | tig0023127:67506-67525 | Msa1405340:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | tig0023127:67516-67535 | Msa1405340:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | tig0023127:67765-67784 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | tig0023127:68240-68259 | Msa1405340:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | tig0023127:68438-68457 | Msa1405340:CDS | 45.0% | |
| !!! | AAATATGAATATTATTTTAA+AGG | + | tig0023127:67921-67940 | Msa1405340:intron | 5.0% |
| !!! | AAATATGAATATTATTTTAA+AGG | + | tig0023127:67921-67940 | Msa1405340:intron | 5.0% |
| TTAGCTACCATAGCTGCTGG+AGG | - | tig0023127:68432-68451 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | tig0023127:68435-68454 | None:intergenic | 50.0% | |
| TTAGCTACCATAGCTGCTGG+AGG | - | tig0023127:68432-68451 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | tig0023127:68435-68454 | None:intergenic | 50.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | tig0023127:68422-68441 | Msa1405340:CDS | 60.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | tig0023127:68422-68441 | Msa1405340:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023127 | gene | 67415 | 68815 | 67415 | ID=Msa1405340;Name=Msa1405340 |
| tig0023127 | mRNA | 67415 | 68815 | 67415 | ID=Msa1405340-mRNA-1;Parent=Msa1405340;Name=Msa1405340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=89|1|1|1|1|1|3|222|168 |
| tig0023127 | exon | 67415 | 67537 | 67415 | ID=Msa1405340-mRNA-1:exon:23994;Parent=Msa1405340-mRNA-1 |
| tig0023127 | exon | 67675 | 67792 | 67675 | ID=Msa1405340-mRNA-1:exon:23995;Parent=Msa1405340-mRNA-1 |
| tig0023127 | exon | 68239 | 68815 | 68239 | ID=Msa1405340-mRNA-1:exon:23996;Parent=Msa1405340-mRNA-1 |
| tig0023127 | five_prime_UTR | 67415 | 67503 | 67415 | ID=Msa1405340-mRNA-1:five_prime_utr;Parent=Msa1405340-mRNA-1 |
| tig0023127 | CDS | 67504 | 67537 | 67504 | ID=Msa1405340-mRNA-1:cds;Parent=Msa1405340-mRNA-1 |
| tig0023127 | CDS | 67675 | 67792 | 67675 | ID=Msa1405340-mRNA-1:cds;Parent=Msa1405340-mRNA-1 |
| tig0023127 | CDS | 68239 | 68593 | 68239 | ID=Msa1405340-mRNA-1:cds;Parent=Msa1405340-mRNA-1 |
| tig0023127 | three_prime_UTR | 68594 | 68815 | 68594 | ID=Msa1405340-mRNA-1:three_prime_utr;Parent=Msa1405340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
