Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228420 | XP_013443805.1 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 1.09e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228420 | I3SHZ2 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 5.18e-111 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043290 | Msa1228420 | 0.851500 | 8.523294e-61 | -8.615850e-47 |
| Msa0108880 | Msa1228420 | 0.801380 | 9.252721e-49 | -8.615850e-47 |
| Msa0616510 | Msa1228420 | 0.834516 | 2.864902e-56 | -8.615850e-47 |
| Msa0650750 | Msa1228420 | 0.801620 | 8.262978e-49 | -8.615850e-47 |
| Msa0699840 | Msa1228420 | 0.847508 | 1.106496e-59 | -8.615850e-47 |
| Msa0137210 | Msa1228420 | 0.811286 | 7.551972e-51 | -8.615850e-47 |
| Msa0164400 | Msa1228420 | 0.810371 | 1.191772e-50 | -8.615850e-47 |
| Msa0194820 | Msa1228420 | 0.809770 | 1.605449e-50 | -8.615850e-47 |
| Msa0194840 | Msa1228420 | 0.800752 | 1.243380e-48 | -8.615850e-47 |
| Msa1226840 | Msa1228420 | 0.907450 | 5.001857e-81 | -8.615850e-47 |
| Msa1228390 | Msa1228420 | 0.955846 | 1.180912e-113 | -8.615850e-47 |
| Msa1228420 | Msa1341890 | 0.835992 | 1.215099e-56 | -8.615850e-47 |
| Msa1228420 | Msa1405340 | 0.999114 | 6.271365e-291 | -8.615850e-47 |
| Msa0418970 | Msa1228420 | 0.820904 | 5.360880e-53 | -8.615850e-47 |
| Msa0460550 | Msa1228420 | 0.808370 | 3.202676e-50 | -8.615850e-47 |
| Msa0471460 | Msa1228420 | 0.818510 | 1.888097e-52 | -8.615850e-47 |
| Msa1020630 | Msa1228420 | 0.801613 | 8.291126e-49 | -8.615850e-47 |
| Msa1183980 | Msa1228420 | 0.997977 | 2.657878e-253 | -8.615850e-47 |
| Msa0562620 | Msa1228420 | 0.850940 | 1.226899e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228420 | MtrunA17_Chr8g0335231 | 94.643 | 168 | 9 | 0 | 1 | 168 | 1 | 168 | 9.98e-115 | 322 |
| Msa1228420 | MtrunA17_Chr4g0052031 | 63.333 | 90 | 31 | 2 | 72 | 160 | 120 | 208 | 9.93e-32 | 115 |
| Msa1228420 | MtrunA17_Chr8g0337391 | 28.333 | 120 | 83 | 2 | 32 | 148 | 33 | 152 | 4.07e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228420 | AT4G37445.1 | 52.201 | 159 | 75 | 1 | 6 | 163 | 3 | 161 | 1.70e-54 | 170 |
| Msa1228420 | AT4G37445.2 | 53.472 | 144 | 67 | 0 | 20 | 163 | 2 | 145 | 1.21e-51 | 162 |
Find 39 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAAGTGAAAATTAAAT+AGG | 0.234371 | 8_2:-3891226 | None:intergenic |
| TATATACACAAATATATATT+TGG | 0.268577 | 8_2:+3890086 | Msa1228420:five_prime_UTR |
| CATTGATTTCATGATCAATA+AGG | 0.282087 | 8_2:+3890997 | Msa1228420:CDS |
| TTTCTTGAATGACATTCTTT+TGG | 0.312655 | 8_2:-3891355 | None:intergenic |
| TTTCTTCAATGACATACTTT+TGG | 0.319686 | 8_2:-3891197 | None:intergenic |
| ACCATCACACAAGGAAATTA+AGG | 0.323749 | 8_2:+3890919 | Msa1228420:CDS |
| GATGATTCTATGATGATAAC+TGG | 0.356747 | 8_2:+3891037 | Msa1228420:CDS |
| CAGACATTAGATCTTGTATC+AGG | 0.382635 | 8_2:+3890337 | Msa1228420:CDS |
| CTTGTCCACTGATGTTAATA+AGG | 0.387576 | 8_2:+3891305 | Msa1228420:three_prime_UTR |
| CTGATACAAGATCTAATGTC+TGG | 0.398337 | 8_2:-3890336 | None:intergenic |
| ATAGCACAATTACAAGCAAT+TGG | 0.429151 | 8_2:-3891271 | None:intergenic |
| ATGAGTTACATGGGAGGATC+AGG | 0.435033 | 8_2:+3890161 | Msa1228420:CDS |
| TATGATGATAACTGGAATAG+TGG | 0.452300 | 8_2:+3891045 | Msa1228420:CDS |
| GCTATGGTAGCTAAGAGAAC+AGG | 0.456395 | 8_2:+3891079 | Msa1228420:CDS |
| CTCTTAGCTACCATAGCTGC+TGG | 0.471596 | 8_2:-3891073 | None:intergenic |
| ATGTTTCTTCTTATCTTCCT+CGG | 0.474190 | 8_2:-3890969 | None:intergenic |
| AGTGGCTCTTATTGCTGTAA+AGG | 0.481060 | 8_2:+3891329 | Msa1228420:three_prime_UTR |
| ACTATTAACATGGCCTTGCC+TGG | 0.488789 | 8_2:+3890881 | Msa1228420:CDS |
| TCCTTAATTTCCTTGTGTGA+TGG | 0.508644 | 8_2:-3890920 | None:intergenic |
| ATCATAATGCTTACCAGGCA+AGG | 0.514482 | 8_2:-3890894 | None:intergenic |
| GAGCTAAAATAGTAGCTGTT+GGG | 0.514762 | 8_2:-3891156 | None:intergenic |
| GTTGGGACAAAGATAACATC+AGG | 0.516476 | 8_2:-3891139 | None:intergenic |
| ATCAAGAATGGCAGTGTGGA+AGG | 0.518421 | 8_2:-3890407 | None:intergenic |
| AGAGCTAAAATAGTAGCTGT+TGG | 0.518631 | 8_2:-3891157 | None:intergenic |
| AGTGGCACCTCCAGCAGCTA+TGG | 0.520301 | 8_2:+3891063 | Msa1228420:CDS |
| TTACTTGAAGATATCAAGAA+TGG | 0.537162 | 8_2:-3890419 | None:intergenic |
| GGGGATGATCATGAGTTACA+TGG | 0.552167 | 8_2:+3890151 | Msa1228420:CDS |
| GGTACATCATAATGCTTACC+AGG | 0.555755 | 8_2:-3890899 | None:intergenic |
| CACTGATGTTAATAAGGCAG+TGG | 0.559465 | 8_2:+3891311 | Msa1228420:three_prime_UTR |
| GACAAAGATAACATCAGGAA+TGG | 0.591291 | 8_2:-3891134 | None:intergenic |
| TGATACAAGATCTAATGTCT+GGG | 0.602501 | 8_2:-3890335 | None:intergenic |
| CACTGCCTTATTAACATCAG+TGG | 0.624636 | 8_2:-3891310 | None:intergenic |
| TTAGCTACCATAGCTGCTGG+AGG | 0.629958 | 8_2:-3891070 | None:intergenic |
| GCTTTCATAACACTTAGTTG+AGG | 0.635041 | 8_2:-3891112 | None:intergenic |
| GGGATGATCATGAGTTACAT+GGG | 0.647259 | 8_2:+3890152 | Msa1228420:CDS |
| AAACTGGAATAAAACATCCG+AGG | 0.684088 | 8_2:+3890952 | Msa1228420:CDS |
| TTATGATGTACCATCACACA+AGG | 0.699802 | 8_2:+3890910 | Msa1228420:CDS |
| AGATATCAAGAATGGCAGTG+TGG | 0.711163 | 8_2:-3890411 | None:intergenic |
| ATGATCATGAGTTACATGGG+AGG | 0.727517 | 8_2:+3890155 | Msa1228420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_2:3890071-3890090 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_2:3890086-3890105 | Msa1228420:five_prime_UTR | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | chr8_2:3891229-3891248 | None:intergenic | 10.0% |
| !!! | ATATATTTTAAGAAAAAATG+TGG | - | chr8_2:3890071-3890090 | None:intergenic | 10.0% |
| !! | TATATACACAAATATATATT+TGG | + | chr8_2:3890086-3890105 | Msa1228420:five_prime_UTR | 10.0% |
| !! | ATTAAAAGTGAAAATTAAAT+AGG | - | chr8_2:3891229-3891248 | None:intergenic | 10.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_2:3890131-3890150 | Msa1228420:exon | 15.0% |
| !!! | TAGTTTTTTTTTTTATTGCT+AGG | + | chr8_2:3890219-3890238 | Msa1228420:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_2:3890298-3890317 | Msa1228420:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_2:3890484-3890503 | Msa1228420:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_2:3890485-3890504 | Msa1228420:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_2:3890599-3890618 | Msa1228420:intron | 15.0% |
| !! | AAAAAATACAAAAACATCAT+GGG | + | chr8_2:3890131-3890150 | Msa1228420:exon | 15.0% |
| !!! | TAGTTTTTTTTTTTATTGCT+AGG | + | chr8_2:3890219-3890238 | Msa1228420:intron | 15.0% |
| !! | AAAATTTAACATATTTCATC+AGG | + | chr8_2:3890298-3890317 | Msa1228420:intron | 15.0% |
| !! | AAAAAAAAAAAAAAGGAAAG+TGG | + | chr8_2:3890484-3890503 | Msa1228420:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGAAAGT+GGG | + | chr8_2:3890485-3890504 | Msa1228420:intron | 15.0% |
| !!! | TCAAATAATCATCTAAAATA+TGG | + | chr8_2:3890599-3890618 | Msa1228420:intron | 15.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_2:3890130-3890149 | Msa1228420:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_2:3890132-3890151 | Msa1228420:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_2:3890209-3890228 | None:intergenic | 20.0% |
| !! | GCAATAAAAAAAAAAACTAG+TGG | - | chr8_2:3890218-3890237 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_2:3890486-3890505 | Msa1228420:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_2:3890540-3890559 | Msa1228420:intron | 20.0% |
| !! | ATGATATCAAATGTTGAATA+TGG | - | chr8_2:3890818-3890837 | None:intergenic | 20.0% |
| !! | ATTCAACATTTGATATCATT+TGG | + | chr8_2:3890819-3890838 | Msa1228420:intron | 20.0% |
| !! | CAAAAAATACAAAAACATCA+TGG | + | chr8_2:3890130-3890149 | Msa1228420:exon | 20.0% |
| !! | AAAAATACAAAAACATCATG+GGG | + | chr8_2:3890132-3890151 | Msa1228420:exon | 20.0% |
| !! | AAAAAAACTAGTGGAATTAA+AGG | - | chr8_2:3890209-3890228 | None:intergenic | 20.0% |
| !! | GCAATAAAAAAAAAAACTAG+TGG | - | chr8_2:3890218-3890237 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGAAAGTG+GGG | + | chr8_2:3890486-3890505 | Msa1228420:intron | 20.0% |
| !! | CAAACTATATACTAGTATAA+TGG | + | chr8_2:3890540-3890559 | Msa1228420:intron | 20.0% |
| !! | ATGATATCAAATGTTGAATA+TGG | - | chr8_2:3890818-3890837 | None:intergenic | 20.0% |
| !! | ATTCAACATTTGATATCATT+TGG | + | chr8_2:3890819-3890838 | Msa1228420:intron | 20.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_2:3890098-3890117 | Msa1228420:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_2:3890422-3890441 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_2:3890605-3890624 | Msa1228420:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_2:3890616-3890635 | Msa1228420:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_2:3890708-3890727 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_2:3890759-3890778 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_2:3890760-3890779 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_2:3890871-3890890 | Msa1228420:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_2:3890997-3891016 | Msa1228420:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_2:3891200-3891219 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | chr8_2:3891358-3891377 | None:intergenic | 25.0% |
| !!! | TATATATTTGGTAGCTTTTG+TGG | + | chr8_2:3890098-3890117 | Msa1228420:five_prime_UTR | 25.0% |
| ! | TTACTTGAAGATATCAAGAA+TGG | - | chr8_2:3890422-3890441 | None:intergenic | 25.0% |
| !! | AATCATCTAAAATATGGTCA+TGG | + | chr8_2:3890605-3890624 | Msa1228420:intron | 25.0% |
| ! | ATATGGTCATGGTAAAATTA+AGG | + | chr8_2:3890616-3890635 | Msa1228420:intron | 25.0% |
| !! | GATTATCATTTTGTCAAAAG+TGG | - | chr8_2:3890708-3890727 | None:intergenic | 25.0% |
| ! | CCTTAGTTGCATAAATTTAA+GGG | - | chr8_2:3890759-3890778 | None:intergenic | 25.0% |
| ! | ACCTTAGTTGCATAAATTTA+AGG | - | chr8_2:3890760-3890779 | None:intergenic | 25.0% |
| !! | TTTTACTAGCACTATTAACA+TGG | + | chr8_2:3890871-3890890 | Msa1228420:intron | 25.0% |
| !!! | CATTGATTTCATGATCAATA+AGG | + | chr8_2:3890997-3891016 | Msa1228420:CDS | 25.0% |
| !! | TTTCTTCAATGACATACTTT+TGG | - | chr8_2:3891200-3891219 | None:intergenic | 25.0% |
| !! | TTTCTTGAATGACATTCTTT+TGG | - | chr8_2:3891358-3891377 | None:intergenic | 25.0% |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_2:3890064-3890083 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_2:3890303-3890322 | Msa1228420:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_2:3890304-3890323 | Msa1228420:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_2:3890338-3890357 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_2:3890756-3890775 | Msa1228420:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_2:3890936-3890955 | Msa1228420:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_2:3890972-3890991 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_2:3891037-3891056 | Msa1228420:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_2:3891045-3891064 | Msa1228420:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | chr8_2:3891274-3891293 | None:intergenic | 30.0% | |
| TTAAGAAAAAATGTGGACCT+AGG | - | chr8_2:3890064-3890083 | None:intergenic | 30.0% | |
| TTAACATATTTCATCAGGTG+AGG | + | chr8_2:3890303-3890322 | Msa1228420:intron | 30.0% | |
| TAACATATTTCATCAGGTGA+GGG | + | chr8_2:3890304-3890323 | Msa1228420:intron | 30.0% | |
| TGATACAAGATCTAATGTCT+GGG | - | chr8_2:3890338-3890357 | None:intergenic | 30.0% | |
| CCCTTAAATTTATGCAACTA+AGG | + | chr8_2:3890756-3890775 | Msa1228420:intron | 30.0% | |
| ! | TTAAGGAAGTTTTCGAAAAC+TGG | + | chr8_2:3890936-3890955 | Msa1228420:CDS | 30.0% |
| ATGTTTCTTCTTATCTTCCT+CGG | - | chr8_2:3890972-3890991 | None:intergenic | 30.0% | |
| GATGATTCTATGATGATAAC+TGG | + | chr8_2:3891037-3891056 | Msa1228420:CDS | 30.0% | |
| TATGATGATAACTGGAATAG+TGG | + | chr8_2:3891045-3891064 | Msa1228420:CDS | 30.0% | |
| ATAGCACAATTACAAGCAAT+TGG | - | chr8_2:3891274-3891293 | None:intergenic | 30.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_2:3890339-3890358 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_2:3890337-3890356 | Msa1228420:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_2:3890681-3890700 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | chr8_2:3890910-3890929 | Msa1228420:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | chr8_2:3890919-3890938 | Msa1228420:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | chr8_2:3890923-3890942 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_2:3890952-3890971 | Msa1228420:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_2:3891115-3891134 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_2:3891137-3891156 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_2:3891159-3891178 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_2:3891160-3891179 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | chr8_2:3891305-3891324 | Msa1228420:three_prime_UTR | 35.0% | |
| CTGATACAAGATCTAATGTC+TGG | - | chr8_2:3890339-3890358 | None:intergenic | 35.0% | |
| CAGACATTAGATCTTGTATC+AGG | + | chr8_2:3890337-3890356 | Msa1228420:CDS | 35.0% | |
| TACATACCATGCATGACAAA+AGG | - | chr8_2:3890681-3890700 | None:intergenic | 35.0% | |
| TTATGATGTACCATCACACA+AGG | + | chr8_2:3890910-3890929 | Msa1228420:CDS | 35.0% | |
| ACCATCACACAAGGAAATTA+AGG | + | chr8_2:3890919-3890938 | Msa1228420:CDS | 35.0% | |
| TCCTTAATTTCCTTGTGTGA+TGG | - | chr8_2:3890923-3890942 | None:intergenic | 35.0% | |
| AAACTGGAATAAAACATCCG+AGG | + | chr8_2:3890952-3890971 | Msa1228420:CDS | 35.0% | |
| GCTTTCATAACACTTAGTTG+AGG | - | chr8_2:3891115-3891134 | None:intergenic | 35.0% | |
| GACAAAGATAACATCAGGAA+TGG | - | chr8_2:3891137-3891156 | None:intergenic | 35.0% | |
| GAGCTAAAATAGTAGCTGTT+GGG | - | chr8_2:3891159-3891178 | None:intergenic | 35.0% | |
| AGAGCTAAAATAGTAGCTGT+TGG | - | chr8_2:3891160-3891179 | None:intergenic | 35.0% | |
| CTTGTCCACTGATGTTAATA+AGG | + | chr8_2:3891305-3891324 | Msa1228420:three_prime_UTR | 35.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_2:3890152-3890171 | Msa1228420:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_2:3890155-3890174 | Msa1228420:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_2:3890414-3890433 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_2:3890672-3890691 | Msa1228420:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_2:3890676-3890695 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_2:3890897-3890916 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_2:3890902-3890921 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_2:3891142-3891161 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | chr8_2:3891313-3891332 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | chr8_2:3891311-3891330 | Msa1228420:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | chr8_2:3891329-3891348 | Msa1228420:three_prime_UTR | 40.0% | |
| GGGATGATCATGAGTTACAT+GGG | + | chr8_2:3890152-3890171 | Msa1228420:CDS | 40.0% | |
| ATGATCATGAGTTACATGGG+AGG | + | chr8_2:3890155-3890174 | Msa1228420:CDS | 40.0% | |
| AGATATCAAGAATGGCAGTG+TGG | - | chr8_2:3890414-3890433 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTTGTCATGCA+TGG | + | chr8_2:3890672-3890691 | Msa1228420:intron | 40.0% |
| ACCATGCATGACAAAAGGTT+TGG | - | chr8_2:3890676-3890695 | None:intergenic | 40.0% | |
| ATCATAATGCTTACCAGGCA+AGG | - | chr8_2:3890897-3890916 | None:intergenic | 40.0% | |
| GGTACATCATAATGCTTACC+AGG | - | chr8_2:3890902-3890921 | None:intergenic | 40.0% | |
| GTTGGGACAAAGATAACATC+AGG | - | chr8_2:3891142-3891161 | None:intergenic | 40.0% | |
| ! | CACTGCCTTATTAACATCAG+TGG | - | chr8_2:3891313-3891332 | None:intergenic | 40.0% |
| CACTGATGTTAATAAGGCAG+TGG | + | chr8_2:3891311-3891330 | Msa1228420:three_prime_UTR | 40.0% | |
| AGTGGCTCTTATTGCTGTAA+AGG | + | chr8_2:3891329-3891348 | Msa1228420:three_prime_UTR | 40.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_2:3890151-3890170 | Msa1228420:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_2:3890161-3890180 | Msa1228420:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_2:3890410-3890429 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_2:3890881-3890900 | Msa1228420:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_2:3891079-3891098 | Msa1228420:CDS | 45.0% | |
| GGGGATGATCATGAGTTACA+TGG | + | chr8_2:3890151-3890170 | Msa1228420:CDS | 45.0% | |
| ATGAGTTACATGGGAGGATC+AGG | + | chr8_2:3890161-3890180 | Msa1228420:CDS | 45.0% | |
| ATCAAGAATGGCAGTGTGGA+AGG | - | chr8_2:3890410-3890429 | None:intergenic | 45.0% | |
| ! | ACTATTAACATGGCCTTGCC+TGG | + | chr8_2:3890881-3890900 | Msa1228420:CDS | 45.0% |
| GCTATGGTAGCTAAGAGAAC+AGG | + | chr8_2:3891079-3891098 | Msa1228420:CDS | 45.0% | |
| !! | TTGTAAAAAAAAAAAAAAAA+AGG | + | chr8_2:3890477-3890496 | Msa1228420:intron | 5.0% |
| !!! | AAATATGAATATTATTTTAA+AGG | + | chr8_2:3890566-3890585 | Msa1228420:intron | 5.0% |
| !! | TTGTAAAAAAAAAAAAAAAA+AGG | + | chr8_2:3890477-3890496 | Msa1228420:intron | 5.0% |
| !!! | AAATATGAATATTATTTTAA+AGG | + | chr8_2:3890566-3890585 | Msa1228420:intron | 5.0% |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_2:3891073-3891092 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_2:3891076-3891095 | None:intergenic | 50.0% | |
| TTAGCTACCATAGCTGCTGG+AGG | - | chr8_2:3891073-3891092 | None:intergenic | 50.0% | |
| CTCTTAGCTACCATAGCTGC+TGG | - | chr8_2:3891076-3891095 | None:intergenic | 50.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_2:3891063-3891082 | Msa1228420:CDS | 60.0% | |
| AGTGGCACCTCCAGCAGCTA+TGG | + | chr8_2:3891063-3891082 | Msa1228420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3890060 | 3891456 | 3890060 | ID=Msa1228420;Name=Msa1228420 |
| chr8_2 | mRNA | 3890060 | 3891456 | 3890060 | ID=Msa1228420-mRNA-1;Parent=Msa1228420;Name=Msa1228420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=89|1|1|1|1|1|3|222|168 |
| chr8_2 | exon | 3890060 | 3890182 | 3890060 | ID=Msa1228420-mRNA-1:exon:1233;Parent=Msa1228420-mRNA-1 |
| chr8_2 | exon | 3890320 | 3890437 | 3890320 | ID=Msa1228420-mRNA-1:exon:1234;Parent=Msa1228420-mRNA-1 |
| chr8_2 | exon | 3890880 | 3891456 | 3890880 | ID=Msa1228420-mRNA-1:exon:1235;Parent=Msa1228420-mRNA-1 |
| chr8_2 | five_prime_UTR | 3890060 | 3890148 | 3890060 | ID=Msa1228420-mRNA-1:five_prime_utr;Parent=Msa1228420-mRNA-1 |
| chr8_2 | CDS | 3890149 | 3890182 | 3890149 | ID=Msa1228420-mRNA-1:cds;Parent=Msa1228420-mRNA-1 |
| chr8_2 | CDS | 3890320 | 3890437 | 3890320 | ID=Msa1228420-mRNA-1:cds;Parent=Msa1228420-mRNA-1 |
| chr8_2 | CDS | 3890880 | 3891234 | 3890880 | ID=Msa1228420-mRNA-1:cds;Parent=Msa1228420-mRNA-1 |
| chr8_2 | three_prime_UTR | 3891235 | 3891456 | 3891235 | ID=Msa1228420-mRNA-1:three_prime_utr;Parent=Msa1228420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
