Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233660 | XP_003627194.1 | 76.969 | 673 | 127 | 5 | 1 | 671 | 158 | 804 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233660 | sp|P38414|LOX1_LENCU | 69.628 | 698 | 175 | 4 | 2 | 671 | 175 | 863 | 0.0 | 995 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233660 | G7LIY9 | 76.969 | 673 | 127 | 5 | 1 | 671 | 158 | 804 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657710 | Msa1233660 | 0.800692 | 1.279424e-48 | -8.615850e-47 |
| Msa0723090 | Msa1233660 | 0.807884 | 4.063399e-50 | -8.615850e-47 |
| Msa0828960 | Msa1233660 | 0.804821 | 1.797468e-49 | -8.615850e-47 |
| Msa1233660 | Msa1314060 | 0.885950 | 5.226247e-72 | -8.615850e-47 |
| Msa1233660 | Msa1354360 | -0.801389 | 9.215165e-49 | -8.615850e-47 |
| Msa1233660 | Msa1354660 | -0.802660 | 5.048392e-49 | -8.615850e-47 |
| Msa1233660 | Msa1354960 | -0.802779 | 4.770847e-49 | -8.615850e-47 |
| Msa1233660 | Msa1366060 | -0.800283 | 1.549829e-48 | -8.615850e-47 |
| Msa0412790 | Msa1233660 | 0.802762 | 4.810089e-49 | -8.615850e-47 |
| Msa1068940 | Msa1233660 | 0.802760 | 4.814450e-49 | -8.615850e-47 |
| Msa0269170 | Msa1233660 | -0.802989 | 4.318291e-49 | -8.615850e-47 |
| Msa1156710 | Msa1233660 | 0.800173 | 1.632101e-48 | -8.615850e-47 |
| Msa1179160 | Msa1233660 | 0.890429 | 9.932997e-74 | -8.615850e-47 |
| Msa0549130 | Msa1233660 | 0.802460 | 5.552360e-49 | -8.615850e-47 |
| Msa0566280 | Msa1233660 | 0.805004 | 1.645866e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233660 | MtrunA17_Chr8g0343001 | 76.969 | 673 | 127 | 5 | 1 | 671 | 158 | 804 | 0.0 | 1060 |
| Msa1233660 | MtrunA17_Chr8g0342991 | 75.816 | 674 | 133 | 7 | 1 | 671 | 158 | 804 | 0.0 | 1036 |
| Msa1233660 | MtrunA17_Chr8g0342971 | 69.341 | 698 | 177 | 4 | 2 | 671 | 179 | 867 | 0.0 | 1004 |
| Msa1233660 | MtrunA17_Chr8g0344211 | 68.052 | 698 | 186 | 4 | 2 | 671 | 177 | 865 | 0.0 | 972 |
| Msa1233660 | MtrunA17_Chr8g0342891 | 66.905 | 698 | 194 | 4 | 2 | 671 | 170 | 858 | 0.0 | 971 |
| Msa1233660 | MtrunA17_Chr8g0343011 | 67.335 | 698 | 186 | 4 | 2 | 671 | 179 | 862 | 0.0 | 970 |
| Msa1233660 | MtrunA17_Chr8g0342951 | 69.198 | 698 | 178 | 4 | 2 | 671 | 177 | 865 | 0.0 | 966 |
| Msa1233660 | MtrunA17_Chr8g0342931 | 66.905 | 698 | 194 | 4 | 2 | 671 | 59 | 747 | 0.0 | 957 |
| Msa1233660 | MtrunA17_Chr8g0342921 | 66.381 | 699 | 196 | 6 | 2 | 671 | 178 | 866 | 0.0 | 949 |
| Msa1233660 | MtrunA17_Chr8g0342901 | 66.074 | 675 | 212 | 5 | 2 | 671 | 163 | 825 | 0.0 | 925 |
| Msa1233660 | MtrunA17_Chr8g0342881 | 59.742 | 698 | 244 | 4 | 2 | 671 | 165 | 853 | 0.0 | 867 |
| Msa1233660 | MtrunA17_Chr2g0329911 | 60.714 | 700 | 236 | 7 | 1 | 671 | 169 | 858 | 0.0 | 854 |
| Msa1233660 | MtrunA17_Chr8g0342981 | 61.836 | 697 | 217 | 10 | 2 | 671 | 146 | 820 | 0.0 | 842 |
| Msa1233660 | MtrunA17_Chr5g0406871 | 58.512 | 699 | 249 | 8 | 2 | 671 | 178 | 864 | 0.0 | 822 |
| Msa1233660 | MtrunA17_Chr8g0343021 | 57.895 | 703 | 249 | 8 | 1 | 671 | 174 | 861 | 0.0 | 813 |
| Msa1233660 | MtrunA17_Chr8g0343031 | 57.082 | 699 | 259 | 8 | 2 | 671 | 176 | 862 | 0.0 | 801 |
| Msa1233660 | MtrunA17_Chr2g0329901 | 57.368 | 699 | 258 | 6 | 1 | 671 | 174 | 860 | 0.0 | 801 |
| Msa1233660 | MtrunA17_Chr3g0120071 | 55.365 | 699 | 271 | 7 | 2 | 671 | 169 | 855 | 0.0 | 788 |
| Msa1233660 | MtrunA17_Chr7g0272791 | 54.455 | 707 | 273 | 8 | 2 | 671 | 170 | 864 | 0.0 | 773 |
| Msa1233660 | MtrunA17_Chr1g0191921 | 55.064 | 701 | 277 | 7 | 2 | 671 | 162 | 855 | 0.0 | 763 |
| Msa1233660 | MtrunA17_Chr1g0205611 | 52.949 | 712 | 282 | 8 | 1 | 671 | 154 | 853 | 0.0 | 759 |
| Msa1233660 | MtrunA17_Chr8g0344241 | 74.314 | 401 | 102 | 1 | 271 | 671 | 59 | 458 | 0.0 | 630 |
| Msa1233660 | MtrunA17_Chr8g0344201 | 44.979 | 707 | 339 | 11 | 2 | 671 | 231 | 924 | 0.0 | 602 |
| Msa1233660 | MtrunA17_Chr4g0033171 | 43.688 | 705 | 350 | 14 | 1 | 671 | 31 | 722 | 0.0 | 569 |
| Msa1233660 | MtrunA17_Chr8g0338451 | 42.264 | 698 | 342 | 11 | 1 | 657 | 173 | 850 | 0.0 | 558 |
| Msa1233660 | MtrunA17_Chr3g0118651 | 43.079 | 708 | 350 | 14 | 2 | 671 | 208 | 900 | 0.0 | 557 |
| Msa1233660 | MtrunA17_Chr8g0377101 | 42.475 | 711 | 354 | 14 | 1 | 671 | 218 | 913 | 0.0 | 538 |
| Msa1233660 | MtrunA17_Chr3g0118641 | 42.090 | 708 | 357 | 13 | 2 | 671 | 207 | 899 | 3.61e-180 | 535 |
| Msa1233660 | MtrunA17_Chr4g0047281 | 40.404 | 693 | 373 | 10 | 1 | 671 | 218 | 892 | 7.16e-173 | 516 |
| Msa1233660 | MtrunA17_Chr3g0118621 | 42.254 | 710 | 356 | 14 | 1 | 671 | 168 | 862 | 4.06e-169 | 506 |
| Msa1233660 | MtrunA17_Chr6g0471951 | 42.380 | 479 | 232 | 6 | 161 | 635 | 42 | 480 | 2.39e-131 | 395 |
| Msa1233660 | MtrunA17_Chr7g0218231 | 60.504 | 119 | 46 | 1 | 326 | 443 | 14 | 132 | 3.16e-41 | 146 |
| Msa1233660 | MtrunA17_Chr6g0468081 | 57.303 | 89 | 37 | 1 | 356 | 443 | 1 | 89 | 2.42e-25 | 100 |
| Msa1233660 | MtrunA17_Chr3g0137991 | 33.607 | 122 | 65 | 3 | 550 | 671 | 1 | 106 | 2.62e-13 | 66.6 |
| Msa1233660 | MtrunA17_Chr2g0277191 | 51.786 | 56 | 27 | 0 | 547 | 602 | 58 | 113 | 3.12e-13 | 67.0 |
| Msa1233660 | MtrunA17_Chr4g0047271 | 39.326 | 89 | 54 | 0 | 583 | 671 | 1 | 89 | 6.63e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233660 | AT1G55020.1 | 53.485 | 703 | 283 | 9 | 2 | 671 | 165 | 856 | 0.0 | 756 |
| Msa1233660 | AT3G22400.1 | 53.296 | 713 | 279 | 9 | 1 | 671 | 183 | 883 | 0.0 | 753 |
| Msa1233660 | AT1G17420.1 | 44.602 | 704 | 343 | 11 | 2 | 671 | 226 | 916 | 0.0 | 597 |
| Msa1233660 | AT1G72520.1 | 44.176 | 704 | 347 | 10 | 2 | 671 | 232 | 923 | 0.0 | 587 |
| Msa1233660 | AT3G45140.1 | 43.423 | 707 | 349 | 19 | 1 | 671 | 202 | 893 | 0.0 | 540 |
| Msa1233660 | AT3G45140.2 | 43.423 | 707 | 349 | 19 | 1 | 671 | 60 | 751 | 0.0 | 539 |
| Msa1233660 | AT1G67560.1 | 42.978 | 712 | 345 | 15 | 3 | 671 | 221 | 914 | 1.06e-179 | 535 |
Find 163 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGCAGCTATTAATTT+TGG | 0.141947 | 8_2:+10541634 | Msa1233660:CDS |
| GCATTTATTCTTCTCAAATA+TGG | 0.209874 | 8_2:-10540401 | None:intergenic |
| GGCTTGTATCGTCCAATTCT+TGG | 0.211828 | 8_2:+10539352 | Msa1233660:CDS |
| CTTCTGATGTTTACAAGAAT+TGG | 0.215197 | 8_2:+10540948 | Msa1233660:CDS |
| AATAAATGCAACTGGCTTAA+AGG | 0.223947 | 8_2:+10540415 | Msa1233660:CDS |
| TACGATGTCTACAATGATTT+AGG | 0.237255 | 8_2:+10539310 | Msa1233660:CDS |
| AGGATTGATATCCAACTTTA+TGG | 0.249177 | 8_2:+10540133 | Msa1233660:CDS |
| CATCCTGATGGTGATAGTTT+TGG | 0.299418 | 8_2:+10540515 | Msa1233660:CDS |
| CTTCTGATGGACTAGAGATA+TGG | 0.305363 | 8_2:+10541401 | Msa1233660:CDS |
| CATTATGAACATGACCATTA+TGG | 0.306288 | 8_2:+10541801 | Msa1233660:CDS |
| GCTTGTATCGTCCAATTCTT+GGG | 0.314951 | 8_2:+10539353 | Msa1233660:CDS |
| GACGATACAAGCCAGGATTT+TGG | 0.315020 | 8_2:-10539342 | None:intergenic |
| ATTCCGAGCTCCAAGCATTC+TGG | 0.322998 | 8_2:+10541494 | Msa1233660:CDS |
| CCAACTTACTTCCAAACTTC+TGG | 0.344499 | 8_2:-10541918 | None:intergenic |
| GCTTCAACACCTTGACTTGC+TGG | 0.346948 | 8_2:-10540560 | None:intergenic |
| TTCTGATGTTTACAAGAATT+GGG | 0.377935 | 8_2:+10540949 | Msa1233660:CDS |
| CATTCATCATAGCAACAAAT+AGG | 0.380660 | 8_2:+10540774 | Msa1233660:CDS |
| GAAGAGTTGAAAACTTTAAG+AGG | 0.382559 | 8_2:+10539244 | Msa1233660:CDS |
| CAGTTGGCCTACCAGAAGTT+TGG | 0.387223 | 8_2:+10541907 | Msa1233660:CDS |
| GTTCTTTATTTGCAAAATGA+TGG | 0.388748 | 8_2:+10540455 | Msa1233660:CDS |
| ATAGAGTCAACATACTTGTT+TGG | 0.392246 | 8_2:+10540905 | Msa1233660:CDS |
| TGCAAACAGACACAAGTGTT+TGG | 0.395541 | 8_2:-10539445 | None:intergenic |
| GGAAGTAAAAGTTTATGAAT+AGG | 0.397518 | 8_2:-10540815 | None:intergenic |
| CATAATGGTCATGTTCATAA+TGG | 0.404031 | 8_2:-10541800 | None:intergenic |
| CAAGTTCTTTCCAGAATGCT+TGG | 0.406750 | 8_2:-10541504 | None:intergenic |
| AAGGTGTTGAAGCTTCAATT+TGG | 0.410740 | 8_2:+10540570 | Msa1233660:CDS |
| TTGAGAAGAATAAATGCAAC+TGG | 0.415813 | 8_2:+10540407 | Msa1233660:CDS |
| CTTGTTTGGAAGTTATTCAA+TGG | 0.417879 | 8_2:+10540919 | Msa1233660:CDS |
| TGGCCAAGTAATTCATCTCT+TGG | 0.419645 | 8_2:-10539634 | None:intergenic |
| CTTTATCCTTCAAGTGATCC+AGG | 0.419657 | 8_2:+10542027 | Msa1233660:CDS |
| GAAGTAAAAGTTTATGAATA+GGG | 0.419737 | 8_2:-10540814 | None:intergenic |
| CTATTTGTTGCTATGATGAA+TGG | 0.420998 | 8_2:-10540773 | None:intergenic |
| TACTCAGGGGTTCCTATCTC+AGG | 0.423400 | 8_2:-10541715 | None:intergenic |
| ATCATTAGGTAGTCCTTGTT+CGG | 0.425520 | 8_2:-10540978 | None:intergenic |
| TCTTGTATGTAGTACACTAA+TGG | 0.429054 | 8_2:-10539223 | None:intergenic |
| GGCGTGTAAACATTACTAAC+AGG | 0.434440 | 8_2:-10540539 | None:intergenic |
| AACTGGAGAGCGCAAGGAAT+GGG | 0.437269 | 8_2:+10539273 | Msa1233660:CDS |
| AGAAGATTCATGCCTGAGAT+AGG | 0.443784 | 8_2:+10541703 | Msa1233660:CDS |
| GTCAATCCTGGATCACTTGA+AGG | 0.455620 | 8_2:-10542033 | None:intergenic |
| AAAACACTTGGAACCATACA+TGG | 0.456618 | 8_2:+10540180 | Msa1233660:CDS |
| TTTACAAGGGAGATGATTGC+TGG | 0.457100 | 8_2:+10539963 | Msa1233660:CDS |
| ACGGATAATCCTTTATCAAA+AGG | 0.457838 | 8_2:-10541375 | None:intergenic |
| TACCCTCGAAGGTGTAGAAC+GGG | 0.460074 | 8_2:+10539394 | Msa1233660:CDS |
| TCAACACCACTAGTGATTCA+AGG | 0.460614 | 8_2:+10539811 | Msa1233660:CDS |
| TTCTGATGGACTAGAGATAT+GGG | 0.461517 | 8_2:+10541402 | Msa1233660:CDS |
| TCAACAAGCTCCTCATACTC+AGG | 0.462736 | 8_2:-10541730 | None:intergenic |
| ACTAGTGGTGTTGAAAACTT+TGG | 0.466858 | 8_2:-10539802 | None:intergenic |
| GGTCAGCCAGACCAAAATCC+TGG | 0.468834 | 8_2:+10539331 | Msa1233660:CDS |
| ATTCCAAGAGATGAATTACT+TGG | 0.470803 | 8_2:+10539631 | Msa1233660:CDS |
| GGATGGGGTCAGTGTAGAAC+AGG | 0.470907 | 8_2:+10540201 | Msa1233660:CDS |
| TTGAAAACTTTAAGAGGAGA+TGG | 0.472089 | 8_2:+10539250 | Msa1233660:CDS |
| ACTTTAAGAGGAGATGGAAC+TGG | 0.474490 | 8_2:+10539256 | Msa1233660:CDS |
| CATACCAATGGCTGACAAGT+TGG | 0.480090 | 8_2:-10540637 | None:intergenic |
| CTTCCCGTTCTACACCTTCG+AGG | 0.480204 | 8_2:-10539397 | None:intergenic |
| GTTCTACACCTTCGAGGGTA+AGG | 0.480400 | 8_2:-10539391 | None:intergenic |
| GAAGGATAAAGCACAGTGTA+TGG | 0.485574 | 8_2:-10542015 | None:intergenic |
| AGGCGTTTCCACCGGAGAGC+AGG | 0.487270 | 8_2:+10540113 | Msa1233660:intron |
| AAAACTTGATACCTACTGTT+GGG | 0.490250 | 8_2:-10542069 | None:intergenic |
| CTAGCTAGAGATCTTAATTG+AGG | 0.494244 | 8_2:-10539715 | None:intergenic |
| ATGCCTCTGAAAGTCAATCC+TGG | 0.497159 | 8_2:-10542045 | None:intergenic |
| TACCTAATGATCTAATCAAA+AGG | 0.497300 | 8_2:+10540990 | Msa1233660:CDS |
| ACACTGACCCCATCCATGTA+TGG | 0.497527 | 8_2:-10540193 | None:intergenic |
| GGTTGACAATACCTCCATAA+TGG | 0.501863 | 8_2:-10541815 | None:intergenic |
| TTCAATTTGGAGCCTTGCCA+AGG | 0.503212 | 8_2:+10540583 | Msa1233660:CDS |
| CACTTGGAACCATACATGGA+TGG | 0.503494 | 8_2:+10540184 | Msa1233660:CDS |
| GATAGGAACCCCTGAGTATG+AGG | 0.506154 | 8_2:+10541720 | Msa1233660:CDS |
| CCAGAAGTTTGGAAGTAAGT+TGG | 0.506851 | 8_2:+10541918 | Msa1233660:CDS |
| ATGTGGAACACTTAGTTCAA+TGG | 0.506969 | 8_2:-10540495 | None:intergenic |
| GGAGAATCGAAGGTAGTCTC+TGG | 0.510791 | 8_2:+10541866 | Msa1233660:CDS |
| AGTGGTGTTGAAAACTTTGG+AGG | 0.512195 | 8_2:-10539799 | None:intergenic |
| CCATTCCGACTCTCAATCCC+TGG | 0.512454 | 8_2:-10539598 | None:intergenic |
| TTTCCAGAATGCTTGGAGCT+CGG | 0.513341 | 8_2:-10541497 | None:intergenic |
| TATTCTGTCTAACAGGCTCT+CGG | 0.513868 | 8_2:+10540335 | Msa1233660:intron |
| ACTTGGAACCATACATGGAT+GGG | 0.517753 | 8_2:+10540185 | Msa1233660:CDS |
| ACAGTGTATGGCATCTTCAC+AGG | 0.526792 | 8_2:-10542003 | None:intergenic |
| GATTATCCGTATGCTTCTGA+TGG | 0.530205 | 8_2:+10541388 | Msa1233660:CDS |
| AATGGAGGTGGTGTTTCACT+TGG | 0.531657 | 8_2:-10539205 | None:intergenic |
| TTCCCGTTCTACACCTTCGA+GGG | 0.531782 | 8_2:-10539396 | None:intergenic |
| GAACTGGAGAGCGCAAGGAA+TGG | 0.534608 | 8_2:+10539272 | Msa1233660:CDS |
| TGGTATTATCACCATAAAGT+TGG | 0.536080 | 8_2:-10540144 | None:intergenic |
| TGGATATCAATCCTGCTCTC+CGG | 0.539625 | 8_2:-10540124 | None:intergenic |
| AAACTTGTACCACTCTCGTA+TGG | 0.540144 | 8_2:+10541599 | Msa1233660:CDS |
| GATCCAGGATTGACTTTCAG+AGG | 0.542922 | 8_2:+10542042 | Msa1233660:CDS |
| CTGGAAAGAACTTGTAGAAG+TGG | 0.543538 | 8_2:+10541513 | Msa1233660:CDS |
| GGACCAAAACTATCACCATC+AGG | 0.544353 | 8_2:-10540518 | None:intergenic |
| ATTTACAACAACGTAAGCCT+TGG | 0.544836 | 8_2:-10540600 | None:intergenic |
| ATCACCAACTTGTCAGCCAT+TGG | 0.550212 | 8_2:+10540633 | Msa1233660:CDS |
| TATGGGGTGCTATTAAGTCA+TGG | 0.556682 | 8_2:+10541419 | Msa1233660:CDS |
| CCAGGGATTGAGAGTCGGAA+TGG | 0.560937 | 8_2:+10539598 | Msa1233660:CDS |
| AAGTGAGAGCACTTCATCAA+AGG | 0.560945 | 8_2:-10539767 | None:intergenic |
| CAACAAGCTCCTCATACTCA+GGG | 0.566761 | 8_2:-10541729 | None:intergenic |
| CAAGTTAGATGCAGCTGTTG+CGG | 0.566896 | 8_2:+10541468 | Msa1233660:CDS |
| AGATGGAACTGGAGAGCGCA+AGG | 0.567592 | 8_2:+10539267 | Msa1233660:CDS |
| TTGCTTGTTATCCAGAGGAG+TGG | 0.569063 | 8_2:+10541318 | Msa1233660:intron |
| ATGGGGTGCTATTAAGTCAT+GGG | 0.569857 | 8_2:+10541420 | Msa1233660:CDS |
| TTGCAGTCTTCTTGTCACCA+TGG | 0.570969 | 8_2:-10541537 | None:intergenic |
| GTCAACCCATGTTTCTGATG+AGG | 0.571558 | 8_2:+10541831 | Msa1233660:CDS |
| TGTATACCTCATCAGAAACA+TGG | 0.579348 | 8_2:-10541837 | None:intergenic |
| CTTGTATCGTCCAATTCTTG+GGG | 0.579393 | 8_2:+10539354 | Msa1233660:CDS |
| AGAATTGGACGATACAAGCC+AGG | 0.579875 | 8_2:-10539349 | None:intergenic |
| TTAACAATGTATCCACCGTA+TGG | 0.580183 | 8_2:-10541664 | None:intergenic |
| TTGGAACCTCACATCTCTCA+AGG | 0.581017 | 8_2:-10539426 | None:intergenic |
| TGACTGATGAGGAATTTACA+AGG | 0.582002 | 8_2:+10539949 | Msa1233660:CDS |
| AACACAATGAACATAAATGC+CGG | 0.582589 | 8_2:+10540848 | Msa1233660:CDS |
| TTATGATAGAGAGGTGCAGT+TGG | 0.584724 | 8_2:+10541891 | Msa1233660:CDS |
| TTGTACCACTCTCGTATGGA+TGG | 0.584919 | 8_2:+10541603 | Msa1233660:CDS |
| GAGGTGGTGTTTCACTTGGA+AGG | 0.586617 | 8_2:-10539201 | None:intergenic |
| TTGAGCTAAAGCTCATTGAA+AGG | 0.590005 | 8_2:+10541947 | Msa1233660:CDS |
| GAGTAGAGGATCGCACTGCA+TGG | 0.591932 | 8_2:+10539925 | Msa1233660:intron |
| AATCAAGATATCTCGCGCAC+CGG | 0.593820 | 8_2:-10540867 | None:intergenic |
| TCATCAAAGGAGTTAAACTC+TGG | 0.594584 | 8_2:-10539754 | None:intergenic |
| TATATATATGATCAGATCCA+GGG | 0.595971 | 8_2:+10539581 | Msa1233660:intron |
| AAACTATCACCATCAGGATG+TGG | 0.599290 | 8_2:-10540512 | None:intergenic |
| CTGATGAGGTATACATCGGA+AGG | 0.599510 | 8_2:+10541845 | Msa1233660:CDS |
| TCTAGTCCATCAGAAGCATA+CGG | 0.600855 | 8_2:-10541394 | None:intergenic |
| GTGTTAACAGCAAAGTCTGA+AGG | 0.601367 | 8_2:-10539664 | None:intergenic |
| GTTTACACGCCAGCAAGTCA+AGG | 0.601425 | 8_2:+10540551 | Msa1233660:CDS |
| TTACCCTCGAAGGTGTAGAA+CGG | 0.602086 | 8_2:+10539393 | Msa1233660:CDS |
| TTCATTGTGTTACGATAGTG+TGG | 0.606854 | 8_2:-10540836 | None:intergenic |
| GCTGACAAGTTGGTGATATG+TGG | 0.609612 | 8_2:-10540627 | None:intergenic |
| CAACAACGTAAGCCTTGGCA+AGG | 0.611036 | 8_2:-10540595 | None:intergenic |
| TGGAAAGAACTTGTAGAAGT+GGG | 0.612408 | 8_2:+10541514 | Msa1233660:CDS |
| CAAATAAAGAACGGTCCTTG+TGG | 0.612677 | 8_2:-10540444 | None:intergenic |
| CTTACTTCCAAACTTCTGGT+AGG | 0.614464 | 8_2:-10541914 | None:intergenic |
| CAGATCCAGGGATTGAGAGT+CGG | 0.614572 | 8_2:+10539593 | Msa1233660:intron |
| AACAAATAGGCATCTTAGTG+TGG | 0.616014 | 8_2:+10540787 | Msa1233660:CDS |
| TACATCGGAAGGAGAATCGA+AGG | 0.617146 | 8_2:+10541856 | Msa1233660:CDS |
| ATATCAATCCTGCTCTCCGG+TGG | 0.617544 | 8_2:-10540121 | None:intergenic |
| GATATCTTGATTAACGCAGA+GGG | 0.619675 | 8_2:+10540878 | Msa1233660:CDS |
| TCTCTGGACTTATGATAGAG+AGG | 0.619857 | 8_2:+10541882 | Msa1233660:CDS |
| GAAGACAATCACAACAATGA+CGG | 0.626014 | 8_2:+10541774 | Msa1233660:CDS |
| GATATACCTTGAATCACTAG+TGG | 0.631429 | 8_2:-10539817 | None:intergenic |
| TCTAATGTAGGCGTTTCCAC+CGG | 0.635207 | 8_2:+10540105 | Msa1233660:intron |
| CTTGGAACCATACATGGATG+GGG | 0.635934 | 8_2:+10540186 | Msa1233660:CDS |
| TCAGAGGCATTCCCAACAGT+AGG | 0.637699 | 8_2:+10542058 | Msa1233660:CDS |
| CAAAGTCTGAAGGTTTCACA+TGG | 0.638369 | 8_2:-10539654 | None:intergenic |
| ATACCACGCCTTACCCTCGA+AGG | 0.638575 | 8_2:+10539383 | Msa1233660:CDS |
| ATCAAAAGGCGAACACCATG+TGG | 0.640034 | 8_2:-10541361 | None:intergenic |
| TCAAAGGAGTTAAACTCTGG+CGG | 0.649224 | 8_2:-10539751 | None:intergenic |
| GTATACCTCATCAGAAACAT+GGG | 0.649932 | 8_2:-10541836 | None:intergenic |
| TGAGTATGAGGAGCTTGTTG+AGG | 0.650300 | 8_2:+10541732 | Msa1233660:CDS |
| TTTGGACAATATCCATACGG+TGG | 0.651200 | 8_2:+10541652 | Msa1233660:CDS |
| ACACTTAGTTCAATGGACAA+TGG | 0.654958 | 8_2:-10540488 | None:intergenic |
| GCTTAAAGGCTTATGCCACA+AGG | 0.656647 | 8_2:+10540429 | Msa1233660:CDS |
| GTTTCTGATGAGGTATACAT+CGG | 0.656844 | 8_2:+10541841 | Msa1233660:CDS |
| AGATATCTTGATTAACGCAG+AGG | 0.657092 | 8_2:+10540877 | Msa1233660:CDS |
| CTAAGTGTTCCACATCCTGA+TGG | 0.659555 | 8_2:+10540503 | Msa1233660:CDS |
| TGAAGCCATCCATACGAGAG+TGG | 0.660134 | 8_2:-10541608 | None:intergenic |
| AACGATACATCTTCTCCACA+TGG | 0.664850 | 8_2:+10541346 | Msa1233660:CDS |
| TATGAACATGACCATTATGG+AGG | 0.665625 | 8_2:+10541804 | Msa1233660:CDS |
| TGTATGTAGTACACTAATGG+AGG | 0.666744 | 8_2:-10539220 | None:intergenic |
| TTGTATCGTCCAATTCTTGG+GGG | 0.670876 | 8_2:+10539355 | Msa1233660:CDS |
| GACTGATGAGGAATTTACAA+GGG | 0.671123 | 8_2:+10539950 | Msa1233660:CDS |
| ATGTAGTACACTAATGGAGG+TGG | 0.671259 | 8_2:-10539217 | None:intergenic |
| AAAACTCCTTGAGAGATGTG+AGG | 0.678800 | 8_2:+10539420 | Msa1233660:CDS |
| TCTGATGGACTAGAGATATG+GGG | 0.686377 | 8_2:+10541403 | Msa1233660:CDS |
| GAACTTGTAGAAGTGGGCCA+TGG | 0.691948 | 8_2:+10541520 | Msa1233660:CDS |
| CACTGCATGGATGACTGATG+AGG | 0.693276 | 8_2:+10539938 | Msa1233660:CDS |
| AACAAGCTCCTCATACTCAG+GGG | 0.722283 | 8_2:-10541728 | None:intergenic |
| ACACCTTCGAGGGTAAGGCG+TGG | 0.724628 | 8_2:-10539386 | None:intergenic |
| ACAAGAAGACTGCAACATGG+TGG | 0.739274 | 8_2:+10541545 | Msa1233660:CDS |
| GTGACAAGAAGACTGCAACA+TGG | 0.743579 | 8_2:+10541542 | Msa1233660:CDS |
| AATATGGAAAGATTGCATCG+TGG | 0.783955 | 8_2:-10540385 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAAATTACTATAAAAAAA+AGG | - | chr8_2:10541277-10541296 | None:intergenic | 10.0% |
| !! | TTTCATTCTACATTTATAAT+TGG | + | chr8_2:10540058-10540077 | Msa1233660:intron | 15.0% |
| !!! | AAATAGTTAGCTTATTTATT+TGG | - | chr8_2:10541166-10541185 | None:intergenic | 15.0% |
| !! | ATTACTATAAAAAAAAGGAA+AGG | - | chr8_2:10541272-10541291 | None:intergenic | 15.0% |
| !!! | TTTTGCTGTGATATTTATTT+TGG | + | chr8_2:10539472-10539491 | Msa1233660:intron | 20.0% |
| !!! | TTGGTAGTTAAATATTTTGA+AGG | + | chr8_2:10540030-10540049 | Msa1233660:intron | 20.0% |
| !! | AATAAAAACATTCAAGTCTT+TGG | - | chr8_2:10540254-10540273 | None:intergenic | 20.0% |
| !! | TGAATTAAATGAACCATAAA+TGG | + | chr8_2:10540304-10540323 | Msa1233660:intron | 20.0% |
| !! | GAATAAAATTTAGCCATTTA+TGG | - | chr8_2:10540320-10540339 | None:intergenic | 20.0% |
| !!! | TAAATTTTATTCTGTCTAAC+AGG | + | chr8_2:10540328-10540347 | Msa1233660:intron | 20.0% |
| !!! | ATCATTTTGCAAATAAAGAA+CGG | - | chr8_2:10540456-10540475 | None:intergenic | 20.0% |
| !! | AATAATGAAATTCATACCAA+TGG | - | chr8_2:10540652-10540671 | None:intergenic | 20.0% |
| !! | ATTATATCTACATGTGTAAT+AGG | + | chr8_2:10540726-10540745 | Msa1233660:intron | 20.0% |
| !! | GAAGTAAAAGTTTATGAATA+GGG | - | chr8_2:10540817-10540836 | None:intergenic | 20.0% |
| !!! | AATCAATGTCTTTCTAAAAA+TGG | - | chr8_2:10541048-10541067 | None:intergenic | 20.0% |
| ! | TGGATTAAACATGTCTTTAA+AGG | + | chr8_2:10539492-10539511 | Msa1233660:intron | 25.0% |
| ! | TATATATATGATCAGATCCA+GGG | + | chr8_2:10539581-10539600 | Msa1233660:intron | 25.0% |
| ! | AATCAAGTAAAGTAAGTTCA+TGG | + | chr8_2:10539879-10539898 | Msa1233660:intron | 25.0% |
| ! | AAAATTCTTACTATGAGTAG+AGG | + | chr8_2:10539911-10539930 | Msa1233660:intron | 25.0% |
| !! | GAAATTTTTGTGATGACATT+TGG | - | chr8_2:10539996-10540015 | None:intergenic | 25.0% |
| ! | TGTCATCACAAAAATTTCTT+CGG | + | chr8_2:10539998-10540017 | Msa1233660:CDS | 25.0% |
| ! | ATTTCTTCGGTAATTAAACT+TGG | + | chr8_2:10540011-10540030 | Msa1233660:intron | 25.0% |
| ! | GCATTTATTCTTCTCAAATA+TGG | - | chr8_2:10540404-10540423 | None:intergenic | 25.0% |
| !! | GTTCTTTATTTGCAAAATGA+TGG | + | chr8_2:10540455-10540474 | Msa1233660:CDS | 25.0% |
| ! | AACTACTCTATTTGATCTAT+CGG | + | chr8_2:10540690-10540709 | Msa1233660:intron | 25.0% |
| ! | GGAAGTAAAAGTTTATGAAT+AGG | - | chr8_2:10540818-10540837 | None:intergenic | 25.0% |
| ! | TTCTGATGTTTACAAGAATT+GGG | + | chr8_2:10540949-10540968 | Msa1233660:CDS | 25.0% |
| ! | TACCTAATGATCTAATCAAA+AGG | + | chr8_2:10540990-10541009 | Msa1233660:CDS | 25.0% |
| !!! | TACCTTTTGATTAGATCATT+AGG | - | chr8_2:10540995-10541014 | None:intergenic | 25.0% |
| !! | CCAAGATGTAATATTTTGTA+AGG | - | chr8_2:10541019-10541038 | None:intergenic | 25.0% |
| ! | CCTTACAAAATATTACATCT+TGG | + | chr8_2:10541016-10541035 | Msa1233660:intron | 25.0% |
| !! | TCTAGATAACTTTTCTAACT+AGG | + | chr8_2:10541196-10541215 | Msa1233660:intron | 25.0% |
| !! | AATTTTGGACAATATCCATA+CGG | + | chr8_2:10541649-10541668 | Msa1233660:CDS | 25.0% |
| !!! | ATGAATCTTCTACTTTTAGT+TGG | - | chr8_2:10541694-10541713 | None:intergenic | 25.0% |
| TCTTGTATGTAGTACACTAA+TGG | - | chr8_2:10539226-10539245 | None:intergenic | 30.0% | |
| GAAGAGTTGAAAACTTTAAG+AGG | + | chr8_2:10539244-10539263 | Msa1233660:CDS | 30.0% | |
| ! | TTGAAAACTTTAAGAGGAGA+TGG | + | chr8_2:10539250-10539269 | Msa1233660:CDS | 30.0% |
| TACGATGTCTACAATGATTT+AGG | + | chr8_2:10539310-10539329 | Msa1233660:CDS | 30.0% | |
| CTATATATATGATCAGATCC+AGG | + | chr8_2:10539580-10539599 | Msa1233660:intron | 30.0% | |
| ATTCCAAGAGATGAATTACT+TGG | + | chr8_2:10539631-10539650 | Msa1233660:CDS | 30.0% | |
| AGGATTGATATCCAACTTTA+TGG | + | chr8_2:10540133-10540152 | Msa1233660:CDS | 30.0% | |
| TGGTATTATCACCATAAAGT+TGG | - | chr8_2:10540147-10540166 | None:intergenic | 30.0% | |
| !!! | CAAGTGTTTTTTGGTTATTG+TGG | - | chr8_2:10540170-10540189 | None:intergenic | 30.0% |
| CACAATAACCAAAAAACACT+TGG | + | chr8_2:10540168-10540187 | Msa1233660:CDS | 30.0% | |
| TTGAGAAGAATAAATGCAAC+TGG | + | chr8_2:10540407-10540426 | Msa1233660:CDS | 30.0% | |
| ! | AATAAATGCAACTGGCTTAA+AGG | + | chr8_2:10540415-10540434 | Msa1233660:CDS | 30.0% |
| ! | CTATTTGTTGCTATGATGAA+TGG | - | chr8_2:10540776-10540795 | None:intergenic | 30.0% |
| CATTCATCATAGCAACAAAT+AGG | + | chr8_2:10540774-10540793 | Msa1233660:CDS | 30.0% | |
| AACACAATGAACATAAATGC+CGG | + | chr8_2:10540848-10540867 | Msa1233660:CDS | 30.0% | |
| ATAGAGTCAACATACTTGTT+TGG | + | chr8_2:10540905-10540924 | Msa1233660:CDS | 30.0% | |
| CTTGTTTGGAAGTTATTCAA+TGG | + | chr8_2:10540919-10540938 | Msa1233660:CDS | 30.0% | |
| CTTCTGATGTTTACAAGAAT+TGG | + | chr8_2:10540948-10540967 | Msa1233660:CDS | 30.0% | |
| ACGGATAATCCTTTATCAAA+AGG | - | chr8_2:10541378-10541397 | None:intergenic | 30.0% | |
| ! | CTTCATGCAGCTATTAATTT+TGG | + | chr8_2:10541634-10541653 | Msa1233660:CDS | 30.0% |
| !! | ATCTTCTACTTTTAGTTGGT+CGG | - | chr8_2:10541690-10541709 | None:intergenic | 30.0% |
| CATAATGGTCATGTTCATAA+TGG | - | chr8_2:10541803-10541822 | None:intergenic | 30.0% | |
| CATTATGAACATGACCATTA+TGG | + | chr8_2:10541801-10541820 | Msa1233660:CDS | 30.0% | |
| ATGATGAGTCATTGAAAAAC+AGG | + | chr8_2:10541974-10541993 | Msa1233660:CDS | 30.0% | |
| AGTCATTGAAAAACAGGAAT+GGG | + | chr8_2:10541980-10541999 | Msa1233660:CDS | 30.0% | |
| TGTATGTAGTACACTAATGG+AGG | - | chr8_2:10539223-10539242 | None:intergenic | 35.0% | |
| CTAGCTAGAGATCTTAATTG+AGG | - | chr8_2:10539718-10539737 | None:intergenic | 35.0% | |
| TCATCAAAGGAGTTAAACTC+TGG | - | chr8_2:10539757-10539776 | None:intergenic | 35.0% | |
| ! | ACTAGTGGTGTTGAAAACTT+TGG | - | chr8_2:10539805-10539824 | None:intergenic | 35.0% |
| GATATACCTTGAATCACTAG+TGG | - | chr8_2:10539820-10539839 | None:intergenic | 35.0% | |
| TGACTGATGAGGAATTTACA+AGG | + | chr8_2:10539949-10539968 | Msa1233660:CDS | 35.0% | |
| GACTGATGAGGAATTTACAA+GGG | + | chr8_2:10539950-10539969 | Msa1233660:CDS | 35.0% | |
| ! | ATTAGATATAGCAAGCACTG+AGG | - | chr8_2:10540091-10540110 | None:intergenic | 35.0% |
| !! | GTGCTTGCTATATCTAATGT+AGG | + | chr8_2:10540093-10540112 | Msa1233660:intron | 35.0% |
| !!! | GTGTTTTTTGGTTATTGTGG+TGG | - | chr8_2:10540167-10540186 | None:intergenic | 35.0% |
| !!! | GTATGGTTCCAAGTGTTTTT+TGG | - | chr8_2:10540179-10540198 | None:intergenic | 35.0% |
| AAAACACTTGGAACCATACA+TGG | + | chr8_2:10540180-10540199 | Msa1233660:CDS | 35.0% | |
| AATATGGAAAGATTGCATCG+TGG | - | chr8_2:10540388-10540407 | None:intergenic | 35.0% | |
| ACACTTAGTTCAATGGACAA+TGG | - | chr8_2:10540491-10540510 | None:intergenic | 35.0% | |
| ATGTGGAACACTTAGTTCAA+TGG | - | chr8_2:10540498-10540517 | None:intergenic | 35.0% | |
| !! | AAGGTGTTGAAGCTTCAATT+TGG | + | chr8_2:10540570-10540589 | Msa1233660:CDS | 35.0% |
| ATTTACAACAACGTAAGCCT+TGG | - | chr8_2:10540603-10540622 | None:intergenic | 35.0% | |
| AACAAATAGGCATCTTAGTG+TGG | + | chr8_2:10540787-10540806 | Msa1233660:CDS | 35.0% | |
| TTCATTGTGTTACGATAGTG+TGG | - | chr8_2:10540839-10540858 | None:intergenic | 35.0% | |
| AGATATCTTGATTAACGCAG+AGG | + | chr8_2:10540877-10540896 | Msa1233660:CDS | 35.0% | |
| GATATCTTGATTAACGCAGA+GGG | + | chr8_2:10540878-10540897 | Msa1233660:CDS | 35.0% | |
| ATCATTAGGTAGTCCTTGTT+CGG | - | chr8_2:10540981-10541000 | None:intergenic | 35.0% | |
| CATAGTTCAACTCTTACCAA+TGG | - | chr8_2:10541106-10541125 | None:intergenic | 35.0% | |
| CATTGGTAAGAGTTGAACTA+TGG | + | chr8_2:10541104-10541123 | Msa1233660:intron | 35.0% | |
| !! | TTCTGATGGACTAGAGATAT+GGG | + | chr8_2:10541402-10541421 | Msa1233660:CDS | 35.0% |
| TGGAAAGAACTTGTAGAAGT+GGG | + | chr8_2:10541514-10541533 | Msa1233660:CDS | 35.0% | |
| TTAACAATGTATCCACCGTA+TGG | - | chr8_2:10541667-10541686 | None:intergenic | 35.0% | |
| GAAGACAATCACAACAATGA+CGG | + | chr8_2:10541774-10541793 | Msa1233660:CDS | 35.0% | |
| TATGAACATGACCATTATGG+AGG | + | chr8_2:10541804-10541823 | Msa1233660:CDS | 35.0% | |
| GTATACCTCATCAGAAACAT+GGG | - | chr8_2:10541839-10541858 | None:intergenic | 35.0% | |
| TGTATACCTCATCAGAAACA+TGG | - | chr8_2:10541840-10541859 | None:intergenic | 35.0% | |
| GTTTCTGATGAGGTATACAT+CGG | + | chr8_2:10541841-10541860 | Msa1233660:CDS | 35.0% | |
| TTGAGCTAAAGCTCATTGAA+AGG | + | chr8_2:10541947-10541966 | Msa1233660:CDS | 35.0% | |
| GAGTCATTGAAAAACAGGAA+TGG | + | chr8_2:10541979-10541998 | Msa1233660:CDS | 35.0% | |
| ATGTAGTACACTAATGGAGG+TGG | - | chr8_2:10539220-10539239 | None:intergenic | 40.0% | |
| ! | ACTTTAAGAGGAGATGGAAC+TGG | + | chr8_2:10539256-10539275 | Msa1233660:CDS | 40.0% |
| GCTTGTATCGTCCAATTCTT+GGG | + | chr8_2:10539353-10539372 | Msa1233660:CDS | 40.0% | |
| CTTGTATCGTCCAATTCTTG+GGG | + | chr8_2:10539354-10539373 | Msa1233660:CDS | 40.0% | |
| TTGTATCGTCCAATTCTTGG+GGG | + | chr8_2:10539355-10539374 | Msa1233660:CDS | 40.0% | |
| GTATTTGATCCCCCAAGAAT+TGG | - | chr8_2:10539367-10539386 | None:intergenic | 40.0% | |
| AAAACTCCTTGAGAGATGTG+AGG | + | chr8_2:10539420-10539439 | Msa1233660:CDS | 40.0% | |
| TGCAAACAGACACAAGTGTT+TGG | - | chr8_2:10539448-10539467 | None:intergenic | 40.0% | |
| !! | TTAAAGGCGCTATACTAGCT+TGG | + | chr8_2:10539508-10539527 | Msa1233660:intron | 40.0% |
| TGGCCAAGTAATTCATCTCT+TGG | - | chr8_2:10539637-10539656 | None:intergenic | 40.0% | |
| CAAAGTCTGAAGGTTTCACA+TGG | - | chr8_2:10539657-10539676 | None:intergenic | 40.0% | |
| GTGTTAACAGCAAAGTCTGA+AGG | - | chr8_2:10539667-10539686 | None:intergenic | 40.0% | |
| TCAAAGGAGTTAAACTCTGG+CGG | - | chr8_2:10539754-10539773 | None:intergenic | 40.0% | |
| !! | AAGTGAGAGCACTTCATCAA+AGG | - | chr8_2:10539770-10539789 | None:intergenic | 40.0% |
| !! | GATGAAGTGCTCTCACTTTT+TGG | + | chr8_2:10539772-10539791 | Msa1233660:CDS | 40.0% |
| ! | AGTGGTGTTGAAAACTTTGG+AGG | - | chr8_2:10539802-10539821 | None:intergenic | 40.0% |
| TCAACACCACTAGTGATTCA+AGG | + | chr8_2:10539811-10539830 | Msa1233660:CDS | 40.0% | |
| TTTACAAGGGAGATGATTGC+TGG | + | chr8_2:10539963-10539982 | Msa1233660:CDS | 40.0% | |
| ACTTGGAACCATACATGGAT+GGG | + | chr8_2:10540185-10540204 | Msa1233660:CDS | 40.0% | |
| TATTCTGTCTAACAGGCTCT+CGG | + | chr8_2:10540335-10540354 | Msa1233660:intron | 40.0% | |
| CAAATAAAGAACGGTCCTTG+TGG | - | chr8_2:10540447-10540466 | None:intergenic | 40.0% | |
| AAACTATCACCATCAGGATG+TGG | - | chr8_2:10540515-10540534 | None:intergenic | 40.0% | |
| !! | CATCCTGATGGTGATAGTTT+TGG | + | chr8_2:10540515-10540534 | Msa1233660:CDS | 40.0% |
| GGCGTGTAAACATTACTAAC+AGG | - | chr8_2:10540542-10540561 | None:intergenic | 40.0% | |
| ! | AATTGGGTTTTCACCGAACA+AGG | + | chr8_2:10540965-10540984 | Msa1233660:CDS | 40.0% |
| CTCATGAGATGTCAATCCAT+TGG | + | chr8_2:10541087-10541106 | Msa1233660:intron | 40.0% | |
| GTTGAACTATGGATCCTTAG+AGG | + | chr8_2:10541115-10541134 | Msa1233660:intron | 40.0% | |
| TATGGATCCTTAGAGGTAGT+AGG | + | chr8_2:10541122-10541141 | Msa1233660:intron | 40.0% | |
| ATGGATCCTTAGAGGTAGTA+GGG | + | chr8_2:10541123-10541142 | Msa1233660:intron | 40.0% | |
| TTCATTCCCTACTACCTCTA+AGG | - | chr8_2:10541132-10541151 | None:intergenic | 40.0% | |
| !!! | TCCTTTTGCTTGTTATCCAG+AGG | + | chr8_2:10541313-10541332 | Msa1233660:intron | 40.0% |
| TCCTCTGGATAACAAGCAAA+AGG | - | chr8_2:10541317-10541336 | None:intergenic | 40.0% | |
| AACGATACATCTTCTCCACA+TGG | + | chr8_2:10541346-10541365 | Msa1233660:CDS | 40.0% | |
| ! | TGGTGTTCGCCTTTTGATAA+AGG | + | chr8_2:10541366-10541385 | Msa1233660:CDS | 40.0% |
| GATTATCCGTATGCTTCTGA+TGG | + | chr8_2:10541388-10541407 | Msa1233660:CDS | 40.0% | |
| ! | TCTAGTCCATCAGAAGCATA+CGG | - | chr8_2:10541397-10541416 | None:intergenic | 40.0% |
| !! | CTTCTGATGGACTAGAGATA+TGG | + | chr8_2:10541401-10541420 | Msa1233660:CDS | 40.0% |
| !! | TCTGATGGACTAGAGATATG+GGG | + | chr8_2:10541403-10541422 | Msa1233660:CDS | 40.0% |
| !! | TATGGGGTGCTATTAAGTCA+TGG | + | chr8_2:10541419-10541438 | Msa1233660:CDS | 40.0% |
| !! | ATGGGGTGCTATTAAGTCAT+GGG | + | chr8_2:10541420-10541439 | Msa1233660:CDS | 40.0% |
| CAAGTTCTTTCCAGAATGCT+TGG | - | chr8_2:10541507-10541526 | None:intergenic | 40.0% | |
| CTGGAAAGAACTTGTAGAAG+TGG | + | chr8_2:10541513-10541532 | Msa1233660:CDS | 40.0% | |
| AAACTTGTACCACTCTCGTA+TGG | + | chr8_2:10541599-10541618 | Msa1233660:CDS | 40.0% | |
| TTTGGACAATATCCATACGG+TGG | + | chr8_2:10541652-10541671 | Msa1233660:CDS | 40.0% | |
| AGAAGATTCATGCCTGAGAT+AGG | + | chr8_2:10541703-10541722 | Msa1233660:CDS | 40.0% | |
| GGTTGACAATACCTCCATAA+TGG | - | chr8_2:10541818-10541837 | None:intergenic | 40.0% | |
| TCTCTGGACTTATGATAGAG+AGG | + | chr8_2:10541882-10541901 | Msa1233660:CDS | 40.0% | |
| ! | TTATGATAGAGAGGTGCAGT+TGG | + | chr8_2:10541891-10541910 | Msa1233660:CDS | 40.0% |
| CTTACTTCCAAACTTCTGGT+AGG | - | chr8_2:10541917-10541936 | None:intergenic | 40.0% | |
| CCAACTTACTTCCAAACTTC+TGG | - | chr8_2:10541921-10541940 | None:intergenic | 40.0% | |
| CCAGAAGTTTGGAAGTAAGT+TGG | + | chr8_2:10541918-10541937 | Msa1233660:CDS | 40.0% | |
| GAAGGATAAAGCACAGTGTA+TGG | - | chr8_2:10542018-10542037 | None:intergenic | 40.0% | |
| CTTTATCCTTCAAGTGATCC+AGG | + | chr8_2:10542027-10542046 | Msa1233660:CDS | 40.0% | |
| AATGGAGGTGGTGTTTCACT+TGG | - | chr8_2:10539208-10539227 | None:intergenic | 45.0% | |
| !! | TACAAGCCAGGATTTTGGTC+TGG | - | chr8_2:10539340-10539359 | None:intergenic | 45.0% |
| ! | GACGATACAAGCCAGGATTT+TGG | - | chr8_2:10539345-10539364 | None:intergenic | 45.0% |
| AGAATTGGACGATACAAGCC+AGG | - | chr8_2:10539352-10539371 | None:intergenic | 45.0% | |
| GGCTTGTATCGTCCAATTCT+TGG | + | chr8_2:10539352-10539371 | Msa1233660:CDS | 45.0% | |
| ! | TTACCCTCGAAGGTGTAGAA+CGG | + | chr8_2:10539393-10539412 | Msa1233660:CDS | 45.0% |
| TTGGAACCTCACATCTCTCA+AGG | - | chr8_2:10539429-10539448 | None:intergenic | 45.0% | |
| TCTAATGTAGGCGTTTCCAC+CGG | + | chr8_2:10540105-10540124 | Msa1233660:intron | 45.0% | |
| TGGATATCAATCCTGCTCTC+CGG | - | chr8_2:10540127-10540146 | None:intergenic | 45.0% | |
| CACTTGGAACCATACATGGA+TGG | + | chr8_2:10540184-10540203 | Msa1233660:CDS | 45.0% | |
| CTTGGAACCATACATGGATG+GGG | + | chr8_2:10540186-10540205 | Msa1233660:CDS | 45.0% | |
| GCTTAAAGGCTTATGCCACA+AGG | + | chr8_2:10540429-10540448 | Msa1233660:CDS | 45.0% | |
| CTAAGTGTTCCACATCCTGA+TGG | + | chr8_2:10540503-10540522 | Msa1233660:CDS | 45.0% | |
| GGACCAAAACTATCACCATC+AGG | - | chr8_2:10540521-10540540 | None:intergenic | 45.0% | |
| ! | TTCAATTTGGAGCCTTGCCA+AGG | + | chr8_2:10540583-10540602 | Msa1233660:CDS | 45.0% |
| !! | GCTGACAAGTTGGTGATATG+TGG | - | chr8_2:10540630-10540649 | None:intergenic | 45.0% |
| ATCACCAACTTGTCAGCCAT+TGG | + | chr8_2:10540633-10540652 | Msa1233660:CDS | 45.0% | |
| CATACCAATGGCTGACAAGT+TGG | - | chr8_2:10540640-10540659 | None:intergenic | 45.0% | |
| AATCAAGATATCTCGCGCAC+CGG | - | chr8_2:10540870-10540889 | None:intergenic | 45.0% | |
| !! | TTGCTTGTTATCCAGAGGAG+TGG | + | chr8_2:10541318-10541337 | Msa1233660:intron | 45.0% |
| ATCAAAAGGCGAACACCATG+TGG | - | chr8_2:10541364-10541383 | None:intergenic | 45.0% | |
| CAAGTTAGATGCAGCTGTTG+CGG | + | chr8_2:10541468-10541487 | Msa1233660:CDS | 45.0% | |
| TTTCCAGAATGCTTGGAGCT+CGG | - | chr8_2:10541500-10541519 | None:intergenic | 45.0% | |
| TTGCAGTCTTCTTGTCACCA+TGG | - | chr8_2:10541540-10541559 | None:intergenic | 45.0% | |
| GTGACAAGAAGACTGCAACA+TGG | + | chr8_2:10541542-10541561 | Msa1233660:CDS | 45.0% | |
| ACAAGAAGACTGCAACATGG+TGG | + | chr8_2:10541545-10541564 | Msa1233660:CDS | 45.0% | |
| TTGTACCACTCTCGTATGGA+TGG | + | chr8_2:10541603-10541622 | Msa1233660:CDS | 45.0% | |
| AACAAGCTCCTCATACTCAG+GGG | - | chr8_2:10541731-10541750 | None:intergenic | 45.0% | |
| CAACAAGCTCCTCATACTCA+GGG | - | chr8_2:10541732-10541751 | None:intergenic | 45.0% | |
| TCAACAAGCTCCTCATACTC+AGG | - | chr8_2:10541733-10541752 | None:intergenic | 45.0% | |
| !! | TGAGTATGAGGAGCTTGTTG+AGG | + | chr8_2:10541732-10541751 | Msa1233660:CDS | 45.0% |
| ! | GTCAACCCATGTTTCTGATG+AGG | + | chr8_2:10541831-10541850 | Msa1233660:CDS | 45.0% |
| CTGATGAGGTATACATCGGA+AGG | + | chr8_2:10541845-10541864 | Msa1233660:CDS | 45.0% | |
| TACATCGGAAGGAGAATCGA+AGG | + | chr8_2:10541856-10541875 | Msa1233660:CDS | 45.0% | |
| ACAGTGTATGGCATCTTCAC+AGG | - | chr8_2:10542006-10542025 | None:intergenic | 45.0% | |
| GTCAATCCTGGATCACTTGA+AGG | - | chr8_2:10542036-10542055 | None:intergenic | 45.0% | |
| ! | GATCCAGGATTGACTTTCAG+AGG | + | chr8_2:10542042-10542061 | Msa1233660:CDS | 45.0% |
| ! | ATGCCTCTGAAAGTCAATCC+TGG | - | chr8_2:10542048-10542067 | None:intergenic | 45.0% |
| GAGGTGGTGTTTCACTTGGA+AGG | - | chr8_2:10539204-10539223 | None:intergenic | 50.0% | |
| ! | AACTGGAGAGCGCAAGGAAT+GGG | + | chr8_2:10539273-10539292 | Msa1233660:CDS | 50.0% |
| GTTCTACACCTTCGAGGGTA+AGG | - | chr8_2:10539394-10539413 | None:intergenic | 50.0% | |
| ! | TACCCTCGAAGGTGTAGAAC+GGG | + | chr8_2:10539394-10539413 | Msa1233660:CDS | 50.0% |
| TTCCCGTTCTACACCTTCGA+GGG | - | chr8_2:10539399-10539418 | None:intergenic | 50.0% | |
| CAGATCCAGGGATTGAGAGT+CGG | + | chr8_2:10539593-10539612 | Msa1233660:intron | 50.0% | |
| CACTGCATGGATGACTGATG+AGG | + | chr8_2:10539938-10539957 | Msa1233660:CDS | 50.0% | |
| ATATCAATCCTGCTCTCCGG+TGG | - | chr8_2:10540124-10540143 | None:intergenic | 50.0% | |
| ACACTGACCCCATCCATGTA+TGG | - | chr8_2:10540196-10540215 | None:intergenic | 50.0% | |
| GTTTACACGCCAGCAAGTCA+AGG | + | chr8_2:10540551-10540570 | Msa1233660:CDS | 50.0% | |
| !! | GCTTCAACACCTTGACTTGC+TGG | - | chr8_2:10540563-10540582 | None:intergenic | 50.0% |
| CAACAACGTAAGCCTTGGCA+AGG | - | chr8_2:10540598-10540617 | None:intergenic | 50.0% | |
| ATCGTTAACAGCCACTCCTC+TGG | - | chr8_2:10541332-10541351 | None:intergenic | 50.0% | |
| ATTCCGAGCTCCAAGCATTC+TGG | + | chr8_2:10541494-10541513 | Msa1233660:CDS | 50.0% | |
| GAACTTGTAGAAGTGGGCCA+TGG | + | chr8_2:10541520-10541539 | Msa1233660:CDS | 50.0% | |
| TGAAGCCATCCATACGAGAG+TGG | - | chr8_2:10541611-10541630 | None:intergenic | 50.0% | |
| TACTCAGGGGTTCCTATCTC+AGG | - | chr8_2:10541718-10541737 | None:intergenic | 50.0% | |
| GATAGGAACCCCTGAGTATG+AGG | + | chr8_2:10541720-10541739 | Msa1233660:CDS | 50.0% | |
| GGAGAATCGAAGGTAGTCTC+TGG | + | chr8_2:10541866-10541885 | Msa1233660:CDS | 50.0% | |
| ! | CAGTTGGCCTACCAGAAGTT+TGG | + | chr8_2:10541907-10541926 | Msa1233660:CDS | 50.0% |
| ! | AGATGGAACTGGAGAGCGCA+AGG | + | chr8_2:10539267-10539286 | Msa1233660:CDS | 55.0% |
| ! | GAACTGGAGAGCGCAAGGAA+TGG | + | chr8_2:10539272-10539291 | Msa1233660:CDS | 55.0% |
| GGTCAGCCAGACCAAAATCC+TGG | + | chr8_2:10539331-10539350 | Msa1233660:CDS | 55.0% | |
| ATACCACGCCTTACCCTCGA+AGG | + | chr8_2:10539383-10539402 | Msa1233660:CDS | 55.0% | |
| CTTCCCGTTCTACACCTTCG+AGG | - | chr8_2:10539400-10539419 | None:intergenic | 55.0% | |
| CCATTCCGACTCTCAATCCC+TGG | - | chr8_2:10539601-10539620 | None:intergenic | 55.0% | |
| CCAGGGATTGAGAGTCGGAA+TGG | + | chr8_2:10539598-10539617 | Msa1233660:CDS | 55.0% | |
| GAGTAGAGGATCGCACTGCA+TGG | + | chr8_2:10539925-10539944 | Msa1233660:intron | 55.0% | |
| GGATGGGGTCAGTGTAGAAC+AGG | + | chr8_2:10540201-10540220 | Msa1233660:CDS | 55.0% | |
| ACACCTTCGAGGGTAAGGCG+TGG | - | chr8_2:10539389-10539408 | None:intergenic | 60.0% | |
| AGGCGTTTCCACCGGAGAGC+AGG | + | chr8_2:10540113-10540132 | Msa1233660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 10539196 | 10542077 | 10539196 | ID=Msa1233660;Name=Msa1233660 |
| chr8_2 | mRNA | 10539196 | 10542077 | 10539196 | ID=Msa1233660-mRNA-1;Parent=Msa1233660;Name=Msa1233660-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|0.85|7|0|671 |
| chr8_2 | exon | 10539196 | 10539460 | 10539196 | ID=Msa1233660-mRNA-1:exon:4117;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10539596 | 10539832 | 10539596 | ID=Msa1233660-mRNA-1:exon:4118;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10539931 | 10540019 | 10539931 | ID=Msa1233660-mRNA-1:exon:4119;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10540115 | 10540222 | 10540115 | ID=Msa1233660-mRNA-1:exon:4120;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10540350 | 10540654 | 10540350 | ID=Msa1233660-mRNA-1:exon:4121;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10540748 | 10541011 | 10540748 | ID=Msa1233660-mRNA-1:exon:4122;Parent=Msa1233660-mRNA-1 |
| chr8_2 | exon | 10541333 | 10542077 | 10541333 | ID=Msa1233660-mRNA-1:exon:4123;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10539196 | 10539460 | 10539196 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10539596 | 10539832 | 10539596 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10539931 | 10540019 | 10539931 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10540115 | 10540222 | 10540115 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10540350 | 10540654 | 10540350 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10540748 | 10541011 | 10540748 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| chr8_2 | CDS | 10541333 | 10542077 | 10541333 | ID=Msa1233660-mRNA-1:cds;Parent=Msa1233660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
