AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354660 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354660 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354660 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354660 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354660 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-442843 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+443784 Msa1354660:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+443489 Msa1354660:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-442856 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+443243 Msa1354660:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-443819 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-444083 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+443438 Msa1354660:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+443222 Msa1354660:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-443755 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+443583 Msa1354660:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+444208 Msa1354660:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+444168 Msa1354660:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-444251 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-443615 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-443488 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+443582 Msa1354660:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+443490 Msa1354660:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+444161 Msa1354660:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+443234 Msa1354660:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+443275 Msa1354660:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-444217 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+443731 Msa1354660:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-443575 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+444214 Msa1354660:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-443520 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+444153 Msa1354660:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-444227 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+444219 Msa1354660:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+444154 Msa1354660:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+443013 Msa1354660:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+442796 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-443521 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+444184 Msa1354660:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-443451 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-443835 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-443462 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-444172 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+443732 Msa1354660:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+443840 Msa1354660:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-443584 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+444254 Msa1354660:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-442834 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-443253 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+443747 Msa1354660:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-444210 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+443274 Msa1354660:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+444123 Msa1354660:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+443258 Msa1354660:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-444082 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-444195 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-444119 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+443038 Msa1354660:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+444215 Msa1354660:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-444165 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-444059 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-443546 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+443244 Msa1354660:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-443818 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-443732 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-444120 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-444071 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-443042 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+444086 Msa1354660:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-444187 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+444139 Msa1354660:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-443771 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-443770 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+443584 Msa1354660:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+443847 Msa1354660:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-443487 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-444064 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-443561 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+443509 Msa1354660:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-443585 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-444250 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+443754 Msa1354660:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-443526 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-444162 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+444085 Msa1354660:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+443252 Msa1354660:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-444223 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-443230 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-444139 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+443528 Msa1354660:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-444096 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+443830 Msa1354660:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-443780 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-443731 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-443762 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+443245 Msa1354660:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-444147 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+444090 Msa1354660:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+442817 Msa1354660:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-443799 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-443445 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-443580 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-443446 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-443500 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-443229 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-444249 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-442826 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-443811 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+443276 Msa1354660:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-444194 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-443793 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+442801 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-443525 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-444031 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-443847 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+444106 Msa1354660:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+443432 Msa1354660:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-443739 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-443790 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-444248 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-443846 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-443427 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+443550 Msa1354660:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+443237 Msa1354660:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-443817 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+444155 Msa1354660:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+443531 Msa1354660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:443013-443032 Msa1354660:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:443013-443032 Msa1354660:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:443137-443156 Msa1354660:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:443178-443197 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:443626-443645 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:443137-443156 Msa1354660:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:443178-443197 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:443626-443645 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:442887-442906 Msa1354660:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:443142-443161 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:443618-443637 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:443627-443646 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:444253-444272 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:442887-442906 Msa1354660:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:443142-443161 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:443618-443637 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:443627-443646 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:444253-444272 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:442846-442865 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:442851-442870 Msa1354660:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:442859-442878 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:442951-442970 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:442951-442970 Msa1354660:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:443038-443057 Msa1354660:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:443045-443064 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:443054-443073 Msa1354660:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:443068-443087 Msa1354660:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:443132-443151 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:443172-443191 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:443275-443294 Msa1354660:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:443523-443542 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:443632-443651 Msa1354660:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:443820-443839 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:443821-443840 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:443822-443841 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:444034-444053 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:444123-444142 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:444123-444142 Msa1354660:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:444139-444158 Msa1354660:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:444252-444271 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:444254-444273 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:444254-444273 Msa1354660:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:442846-442865 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:442851-442870 Msa1354660:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:442859-442878 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:442951-442970 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:442951-442970 Msa1354660:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:443038-443057 Msa1354660:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:443045-443064 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:443054-443073 Msa1354660:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:443068-443087 Msa1354660:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:443132-443151 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:443172-443191 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:443275-443294 Msa1354660:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:443523-443542 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:443632-443651 Msa1354660:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:443820-443839 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:443821-443840 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:443822-443841 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:444034-444053 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:444123-444142 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:444123-444142 Msa1354660:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:444139-444158 Msa1354660:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:444252-444271 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:444254-444273 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:444254-444273 Msa1354660:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:442837-442856 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:442904-442923 Msa1354660:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:442909-442928 Msa1354660:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:442914-442933 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:442952-442971 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:442950-442969 Msa1354660:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:442956-442975 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:442955-442974 Msa1354660:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:442956-442975 Msa1354660:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:443077-443096 Msa1354660:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:443106-443125 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:443274-443293 Msa1354660:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:443276-443295 Msa1354660:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:443357-443376 Msa1354660:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:443490-443509 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:443490-443509 Msa1354660:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:443524-443543 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:443528-443547 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:443529-443548 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:443528-443547 Msa1354660:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:443873-443892 Msa1354660:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:443983-444002 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:443984-444003 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:443983-444002 Msa1354660:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:443984-444003 Msa1354660:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:443998-444017 Msa1354660:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:444122-444141 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:444142-444161 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:444197-444216 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:444208-444227 Msa1354660:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:444251-444270 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:444270-444289 Msa1354660:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:442837-442856 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:442904-442923 Msa1354660:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:442909-442928 Msa1354660:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:442914-442933 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:442952-442971 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:442950-442969 Msa1354660:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:442956-442975 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:442955-442974 Msa1354660:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:442956-442975 Msa1354660:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:443077-443096 Msa1354660:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:443106-443125 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:443274-443293 Msa1354660:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:443276-443295 Msa1354660:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:443357-443376 Msa1354660:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:443490-443509 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:443490-443509 Msa1354660:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:443524-443543 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:443528-443547 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:443529-443548 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:443528-443547 Msa1354660:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:443873-443892 Msa1354660:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:443983-444002 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:443984-444003 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:443983-444002 Msa1354660:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:443984-444003 Msa1354660:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:443998-444017 Msa1354660:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:444122-444141 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:444142-444161 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:444197-444216 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:444208-444227 Msa1354660:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:444251-444270 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:444270-444289 Msa1354660:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:442919-442938 Msa1354660:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:442960-442979 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:442957-442976 Msa1354660:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:442958-442977 Msa1354660:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:443222-443241 Msa1354660:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:443232-443251 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:443233-443252 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:443364-443383 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:443404-443423 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:443454-443473 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:443465-443484 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:443491-443510 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:443489-443508 Msa1354660:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:443531-443550 Msa1354660:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:443564-443583 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:443796-443815 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:443814-443833 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:443849-443868 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:443890-443909 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:443887-443906 Msa1354660:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:443935-443954 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:443963-443982 Msa1354660:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:443964-443983 Msa1354660:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:443971-443990 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:444074-444093 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:444085-444104 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:444085-444104 Msa1354660:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:444150-444169 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:444198-444217 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:444213-444232 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:444215-444234 Msa1354660:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:442919-442938 Msa1354660:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:442960-442979 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:442957-442976 Msa1354660:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:442958-442977 Msa1354660:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:443222-443241 Msa1354660:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:443232-443251 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:443233-443252 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:443364-443383 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:443404-443423 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:443454-443473 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:443465-443484 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:443491-443510 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:443489-443508 Msa1354660:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:443531-443550 Msa1354660:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:443564-443583 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:443796-443815 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:443814-443833 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:443849-443868 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:443890-443909 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:443887-443906 Msa1354660:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:443935-443954 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:443963-443982 Msa1354660:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:443964-443983 Msa1354660:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:443971-443990 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:444074-444093 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:444085-444104 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:444085-444104 Msa1354660:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:444150-444169 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:444198-444217 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:444213-444232 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:444215-444234 Msa1354660:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:442829-442848 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:442961-442980 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:442965-442984 Msa1354660:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:443090-443109 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:443197-443216 Msa1354660:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:443198-443217 Msa1354660:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:443234-443253 Msa1354660:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:443237-443256 Msa1354660:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:443280-443299 Msa1354660:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:443340-443359 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:443353-443372 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:443354-443373 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:443368-443387 Msa1354660:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:443398-443417 Msa1354660:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:443403-443422 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:443403-443422 Msa1354660:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:443409-443428 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:443430-443449 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:443432-443451 Msa1354660:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:443438-443457 Msa1354660:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:443448-443467 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:443449-443468 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:443503-443522 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:443578-443597 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:443583-443602 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:443582-443601 Msa1354660:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:443583-443602 Msa1354660:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:443588-443607 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:443673-443692 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:443734-443753 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:443732-443751 Msa1354660:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:443742-443761 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:443765-443784 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:443773-443792 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:443774-443793 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:443783-443802 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:443784-443803 Msa1354660:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:443785-443804 Msa1354660:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:443830-443849 Msa1354660:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:443838-443857 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:443840-443859 Msa1354660:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:443850-443869 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:443847-443866 Msa1354660:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:443924-443943 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:443948-443967 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:443972-443991 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:443978-443997 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:444086-444105 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:444086-444105 Msa1354660:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:444099-444118 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:444190-444209 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:444214-444233 Msa1354660:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:442829-442848 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:442961-442980 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:442965-442984 Msa1354660:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:443090-443109 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:443197-443216 Msa1354660:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:443198-443217 Msa1354660:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:443234-443253 Msa1354660:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:443237-443256 Msa1354660:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:443280-443299 Msa1354660:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:443340-443359 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:443353-443372 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:443354-443373 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:443368-443387 Msa1354660:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:443398-443417 Msa1354660:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:443403-443422 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:443403-443422 Msa1354660:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:443409-443428 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:443430-443449 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:443432-443451 Msa1354660:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:443438-443457 Msa1354660:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:443448-443467 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:443449-443468 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:443503-443522 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:443578-443597 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:443583-443602 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:443582-443601 Msa1354660:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:443583-443602 Msa1354660:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:443588-443607 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:443673-443692 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:443734-443753 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:443732-443751 Msa1354660:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:443742-443761 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:443765-443784 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:443773-443792 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:443774-443793 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:443783-443802 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:443784-443803 Msa1354660:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:443785-443804 Msa1354660:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:443830-443849 Msa1354660:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:443838-443857 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:443840-443859 Msa1354660:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:443850-443869 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:443847-443866 Msa1354660:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:443924-443943 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:443948-443967 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:443972-443991 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:443978-443997 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:444086-444105 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:444086-444105 Msa1354660:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:444099-444118 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:444190-444209 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:444214-444233 Msa1354660:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:442817-442836 Msa1354660:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:442938-442957 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:442945-442964 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:442971-442990 Msa1354660:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:443199-443218 Msa1354660:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:443244-443263 Msa1354660:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:443245-443264 Msa1354660:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:443258-443277 Msa1354660:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:443279-443298 Msa1354660:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:443324-443343 Msa1354660:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:443345-443364 Msa1354660:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:443399-443418 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:443397-443416 Msa1354660:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:443587-443606 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:443584-443603 Msa1354660:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:443664-443683 Msa1354660:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:443690-443709 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:443688-443707 Msa1354660:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:443689-443708 Msa1354660:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:443731-443750 Msa1354660:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:443735-443754 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:443788-443807 Msa1354660:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:443793-443812 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:443920-443939 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:443921-443940 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:443922-443941 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:443923-443942 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:443944-443963 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:443951-443970 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:444004-444023 Msa1354660:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:444019-444038 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:444062-444081 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:444090-444109 Msa1354660:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:444106-444125 Msa1354660:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:444153-444172 Msa1354660:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:444220-444239 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:444219-444238 Msa1354660:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:442817-442836 Msa1354660:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:442938-442957 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:442945-442964 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:442971-442990 Msa1354660:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:443199-443218 Msa1354660:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:443244-443263 Msa1354660:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:443245-443264 Msa1354660:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:443258-443277 Msa1354660:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:443279-443298 Msa1354660:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:443324-443343 Msa1354660:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:443345-443364 Msa1354660:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:443399-443418 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:443397-443416 Msa1354660:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:443587-443606 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:443584-443603 Msa1354660:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:443664-443683 Msa1354660:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:443690-443709 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:443688-443707 Msa1354660:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:443689-443708 Msa1354660:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:443731-443750 Msa1354660:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:443735-443754 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:443788-443807 Msa1354660:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:443793-443812 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:443920-443939 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:443921-443940 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:443922-443941 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:443923-443942 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:443944-443963 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:443951-443970 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:444004-444023 Msa1354660:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:444019-444038 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:444062-444081 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:444090-444109 Msa1354660:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:444106-444125 Msa1354660:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:444153-444172 Msa1354660:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:444220-444239 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:444219-444238 Msa1354660:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:443214-443233 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:443215-443234 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:443216-443235 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:443243-443262 Msa1354660:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:443252-443271 Msa1354660:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:443256-443275 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:443335-443354 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:443382-443401 Msa1354660:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:443509-443528 Msa1354660:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:443549-443568 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:443550-443569 Msa1354660:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:443644-443663 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:443645-443664 Msa1354660:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:443658-443677 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:443659-443678 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:443663-443682 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:443692-443711 Msa1354660:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:443693-443712 Msa1354660:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:443701-443720 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:443747-443766 Msa1354660:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:443758-443777 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:443802-443821 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:443919-443938 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:443940-443959 Msa1354660:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:444067-444086 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:444154-444173 Msa1354660:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:444184-444203 Msa1354660:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:444238-444257 Msa1354660:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:443214-443233 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:443215-443234 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:443216-443235 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:443243-443262 Msa1354660:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:443252-443271 Msa1354660:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:443256-443275 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:443335-443354 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:443382-443401 Msa1354660:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:443509-443528 Msa1354660:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:443549-443568 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:443550-443569 Msa1354660:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:443644-443663 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:443645-443664 Msa1354660:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:443658-443677 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:443659-443678 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:443663-443682 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:443692-443711 Msa1354660:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:443693-443712 Msa1354660:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:443701-443720 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:443747-443766 Msa1354660:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:443758-443777 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:443802-443821 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:443919-443938 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:443940-443959 Msa1354660:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:444067-444086 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:444154-444173 Msa1354660:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:444184-444203 Msa1354660:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:444238-444257 Msa1354660:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:443210-443229 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:443387-443406 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:443654-443673 Msa1354660:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:443702-443721 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:443754-443773 Msa1354660:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:443902-443921 Msa1354660:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:444155-444174 Msa1354660:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:444165-444184 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:444168-444187 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:444168-444187 Msa1354660:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:443210-443229 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:443387-443406 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:443654-443673 Msa1354660:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:443702-443721 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:443754-443773 Msa1354660:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:443902-443921 Msa1354660:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:444155-444174 Msa1354660:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:444165-444184 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:444168-444187 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:444168-444187 Msa1354660:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:443906-443925 Msa1354660:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:444161-444180 Msa1354660:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:444175-444194 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:444226-444245 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:444230-444249 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:443906-443925 Msa1354660:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:444161-444180 Msa1354660:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:444175-444194 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:444226-444245 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:444230-444249 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:443909-443928 Msa1354660:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:443909-443928 Msa1354660:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 442810 444295 442810 ID=Msa1354660;Name=Msa1354660
tig0014543 mRNA 442810 444295 442810 ID=Msa1354660-mRNA-1;Parent=Msa1354660;Name=Msa1354660-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 442810 442866 442810 ID=Msa1354660-mRNA-1:exon:9180;Parent=Msa1354660-mRNA-1
tig0014543 exon 442985 443059 442985 ID=Msa1354660-mRNA-1:exon:9181;Parent=Msa1354660-mRNA-1
tig0014543 exon 443219 443297 443219 ID=Msa1354660-mRNA-1:exon:9182;Parent=Msa1354660-mRNA-1
tig0014543 exon 443419 443629 443419 ID=Msa1354660-mRNA-1:exon:9183;Parent=Msa1354660-mRNA-1
tig0014543 exon 443724 443868 443724 ID=Msa1354660-mRNA-1:exon:9184;Parent=Msa1354660-mRNA-1
tig0014543 exon 444020 444295 444020 ID=Msa1354660-mRNA-1:exon:9185;Parent=Msa1354660-mRNA-1
tig0014543 CDS 442810 442866 442810 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
tig0014543 CDS 442985 443059 442985 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
tig0014543 CDS 443219 443297 443219 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
tig0014543 CDS 443419 443629 443419 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
tig0014543 CDS 443724 443868 443724 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
tig0014543 CDS 444020 444295 444020 ID=Msa1354660-mRNA-1:cds;Parent=Msa1354660-mRNA-1
Gene Sequence

>Msa1354660

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354660

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*