AlfalfaGEDB | Msa1354360

M. sativa cultivar zhongmu-4 / Msa1354360

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354360	KEH29749.1	75.633	316	27	7	1	280	1	302	1.04e-153	441

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354360	sp\|Q3BAI2\|YCX91_PHAAO	96.703	91	3	0	190	280	1	91	4.77e-59	186

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354360	A0A072UJ16	75.633	316	27	7	1	280	1	302	4.98e-154	441

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1354360	0.862584	4.568361e-64	-8.615850e-47
Msa0002690	Msa1354360	0.801405	9.144986e-49	-8.615850e-47
Msa0004180	Msa1354360	0.818798	1.624302e-52	-8.615850e-47
Msa0007810	Msa1354360	0.804061	2.587805e-49	-8.615850e-47
Msa0011410	Msa1354360	0.824561	7.549304e-54	-8.615850e-47
Msa0011440	Msa1354360	0.844093	9.357576e-59	-8.615850e-47
Msa0011450	Msa1354360	0.837777	4.254937e-57	-8.615850e-47
Msa0013270	Msa1354360	-0.803890	2.809416e-49	-8.615850e-47
Msa0016380	Msa1354360	0.810940	8.975699e-51	-8.615850e-47
Msa0017300	Msa1354360	0.865835	4.425660e-65	-8.615850e-47

Showing 1 to 10 of 716 entries

Previous1 2 3 4 5…72Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1354360	MtrunA17_Chr4g0016151	100.000	82	0	199	280	1	82	7.40e-55	172
Msa1354360	MtrunA17_CPg0492351	100.000	82	0	199	280	1	82	7.40e-55	172
Msa1354360	MtrunA17_Chr7g0229411	98.780	82	1	199	280	1	82	3.39e-54	170
Msa1354360	MtrunA17_Chr4g0000631	98.780	82	1	199	280	1	82	3.50e-54	170
Msa1354360	MtrunA17_Chr5g0435911	97.561	82	2	199	280	1	82	1.38e-52	166

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTTCCTCGGGCCAGA+CGG	0.597813	tig0014543:-167747	None:intergenic
AAAGTCGTAAGACCATGTAT+GGG	0.556989	tig0014543:-168235	None:intergenic
AAAGTTACTCTAGGGATAAC+AGG	0.383241	tig0014543:-167600	None:intergenic
AACGGCGGCCGTAACTATAA+CGG	0.599287	tig0014543:-168132	None:intergenic
AAGAGCTCACATCGACGGGA+AGG	0.613365	tig0014543:-167565	None:intergenic
AAGGTAACGGAGGCGTGCAA+AGG	0.595805	tig0014543:-167765	None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG	0.511527	tig0014543:-168105	None:intergenic
AAGGTTTGGCACCTCGATGT+CGG	0.545826	tig0014543:-167546	None:intergenic
AAGTCGTAAGACCATGTATG+GGG	0.621859	tig0014543:-168234	None:intergenic
AAGTTCGGGATGGATTGGTG+TGG	0.636372	tig0014543:+166786	None:intergenic

Showing 1 to 10 of 122 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CACCTATCGTTAATGAAAAA+CGG	+	tig0014543:167122-167141	Msa1354360:intron	30.0%
AACGGATAAAAGTTACTCTA+GGG	-	tig0014543:167611-167630	None:intergenic	30.0%
CACCTATCGTTAATGAAAAA+CGG	+	tig0014543:167122-167141	Msa1354360:intron	30.0%
AACGGATAAAAGTTACTCTA+GGG	-	tig0014543:167611-167630	None:intergenic	30.0%
CAACGGATAAAAGTTACTCT+AGG	-	tig0014543:167612-167631	None:intergenic	35.0%
AAAGTCGTAAGACCATGTAT+GGG	-	tig0014543:168238-168257	None:intergenic	35.0%
CAACGGATAAAAGTTACTCT+AGG	-	tig0014543:167612-167631	None:intergenic	35.0%
AAAGTCGTAAGACCATGTAT+GGG	-	tig0014543:168238-168257	None:intergenic	35.0%
TCGTTCATGGTTCGATATTC+TGG	-	tig0014543:166831-166850	None:intergenic	40.0%
TCGAACCATGAACGAAGTAA+AGG	+	tig0014543:166836-166855	Msa1354360:intron	40.0%

Showing 1 to 10 of 458 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
tig0014543	gene	166795	168280	166795	ID=Msa1354360;Name=Msa1354360
tig0014543	mRNA	166795	168280	166795	ID=Msa1354360-mRNA-1;Parent=Msa1354360;Name=Msa1354360-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0\|0\|0\|0.5\|1\|1\|6\|0\|280
tig0014543	exon	166795	166851	166795	ID=Msa1354360-mRNA-1:exon:9092;Parent=Msa1354360-mRNA-1
tig0014543	exon	166970	167044	166970	ID=Msa1354360-mRNA-1:exon:9093;Parent=Msa1354360-mRNA-1
tig0014543	exon	167204	167282	167204	ID=Msa1354360-mRNA-1:exon:9094;Parent=Msa1354360-mRNA-1
tig0014543	exon	167404	167614	167404	ID=Msa1354360-mRNA-1:exon:9095;Parent=Msa1354360-mRNA-1
tig0014543	exon	167709	167853	167709	ID=Msa1354360-mRNA-1:exon:9096;Parent=Msa1354360-mRNA-1
tig0014543	exon	168005	168280	168005	ID=Msa1354360-mRNA-1:exon:9097;Parent=Msa1354360-mRNA-1
tig0014543	CDS	166795	166851	166795	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543	CDS	166970	167044	166970	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543	CDS	167204	167282	167204	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543	CDS	167404	167614	167404	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543	CDS	167709	167853	167709	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543	CDS	168005	168280	168005	ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1

Gene Sequence

>Msa1354360

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354360

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*