AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354360 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354360 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354360 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354360 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354360 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-166828 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+167769 Msa1354360:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+167474 Msa1354360:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-166841 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+167228 Msa1354360:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-167804 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-168068 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+167423 Msa1354360:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+167207 Msa1354360:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-167740 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+167568 Msa1354360:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+168193 Msa1354360:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+168153 Msa1354360:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-168236 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-167600 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-167473 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+167567 Msa1354360:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+167475 Msa1354360:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+168146 Msa1354360:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+167219 Msa1354360:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+167260 Msa1354360:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-168202 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+167716 Msa1354360:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-167560 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+168199 Msa1354360:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-167505 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+168138 Msa1354360:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-168212 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+168204 Msa1354360:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+168139 Msa1354360:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+166998 Msa1354360:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+166781 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-167506 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+168169 Msa1354360:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-167436 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-167820 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-167447 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-168157 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+167717 Msa1354360:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+167825 Msa1354360:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-167569 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+168239 Msa1354360:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-166819 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-167238 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+167732 Msa1354360:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-168195 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+167259 Msa1354360:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+168108 Msa1354360:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+167243 Msa1354360:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-168067 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-168180 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-168104 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+167023 Msa1354360:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+168200 Msa1354360:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-168150 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-168044 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-167531 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+167229 Msa1354360:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-167803 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-167717 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-168105 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-168056 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-167027 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+168071 Msa1354360:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-168172 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+168124 Msa1354360:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-167756 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-167755 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+167569 Msa1354360:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+167832 Msa1354360:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-167472 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-168049 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-167546 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+167494 Msa1354360:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-167570 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-168235 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+167739 Msa1354360:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-167511 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-168147 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+168070 Msa1354360:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+167237 Msa1354360:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-168208 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-167215 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-168124 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+167513 Msa1354360:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-168081 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+167815 Msa1354360:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-167765 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-167716 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-167747 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+167230 Msa1354360:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-168132 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+168075 Msa1354360:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+166802 Msa1354360:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-167784 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-167430 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-167565 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-167431 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-167485 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-167214 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-168234 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-166811 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-167796 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+167261 Msa1354360:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-168179 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-167778 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+166786 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-167510 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-168016 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-167832 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+168091 Msa1354360:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+167417 Msa1354360:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-167724 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-167775 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-168233 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-167831 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-167412 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+167535 Msa1354360:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+167222 Msa1354360:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-167802 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+168140 Msa1354360:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+167516 Msa1354360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:166998-167017 Msa1354360:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:166998-167017 Msa1354360:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:167122-167141 Msa1354360:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:167163-167182 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:167611-167630 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:167122-167141 Msa1354360:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:167163-167182 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:167611-167630 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:166872-166891 Msa1354360:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:167127-167146 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:167603-167622 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:167612-167631 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:168238-168257 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:166872-166891 Msa1354360:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:167127-167146 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:167603-167622 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:167612-167631 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:168238-168257 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:166831-166850 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:166836-166855 Msa1354360:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:166844-166863 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:166936-166955 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:166936-166955 Msa1354360:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:167023-167042 Msa1354360:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:167030-167049 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:167039-167058 Msa1354360:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:167053-167072 Msa1354360:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:167117-167136 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:167157-167176 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:167260-167279 Msa1354360:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:167508-167527 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:167617-167636 Msa1354360:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:167805-167824 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:167806-167825 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:167807-167826 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:168019-168038 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:168108-168127 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:168108-168127 Msa1354360:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:168124-168143 Msa1354360:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:168237-168256 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:168239-168258 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:168239-168258 Msa1354360:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:166831-166850 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:166836-166855 Msa1354360:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:166844-166863 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:166936-166955 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:166936-166955 Msa1354360:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:167023-167042 Msa1354360:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:167030-167049 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:167039-167058 Msa1354360:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:167053-167072 Msa1354360:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:167117-167136 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:167157-167176 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:167260-167279 Msa1354360:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:167508-167527 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:167617-167636 Msa1354360:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:167805-167824 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:167806-167825 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:167807-167826 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:168019-168038 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:168108-168127 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:168108-168127 Msa1354360:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:168124-168143 Msa1354360:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:168237-168256 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:168239-168258 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:168239-168258 Msa1354360:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:166822-166841 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:166889-166908 Msa1354360:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:166894-166913 Msa1354360:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:166899-166918 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:166937-166956 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:166935-166954 Msa1354360:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:166941-166960 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:166940-166959 Msa1354360:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:166941-166960 Msa1354360:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:167062-167081 Msa1354360:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:167091-167110 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:167259-167278 Msa1354360:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:167261-167280 Msa1354360:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:167342-167361 Msa1354360:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:167475-167494 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:167475-167494 Msa1354360:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:167509-167528 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:167513-167532 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:167514-167533 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:167513-167532 Msa1354360:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:167858-167877 Msa1354360:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:167968-167987 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:167969-167988 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:167968-167987 Msa1354360:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:167969-167988 Msa1354360:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:167983-168002 Msa1354360:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:168107-168126 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:168127-168146 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:168182-168201 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:168193-168212 Msa1354360:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:168236-168255 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:168255-168274 Msa1354360:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:166822-166841 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:166889-166908 Msa1354360:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:166894-166913 Msa1354360:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:166899-166918 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:166937-166956 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:166935-166954 Msa1354360:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:166941-166960 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:166940-166959 Msa1354360:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:166941-166960 Msa1354360:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:167062-167081 Msa1354360:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:167091-167110 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:167259-167278 Msa1354360:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:167261-167280 Msa1354360:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:167342-167361 Msa1354360:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:167475-167494 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:167475-167494 Msa1354360:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:167509-167528 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:167513-167532 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:167514-167533 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:167513-167532 Msa1354360:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:167858-167877 Msa1354360:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:167968-167987 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:167969-167988 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:167968-167987 Msa1354360:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:167969-167988 Msa1354360:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:167983-168002 Msa1354360:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:168107-168126 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:168127-168146 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:168182-168201 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:168193-168212 Msa1354360:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:168236-168255 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:168255-168274 Msa1354360:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:166904-166923 Msa1354360:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:166945-166964 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:166942-166961 Msa1354360:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:166943-166962 Msa1354360:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:167207-167226 Msa1354360:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:167217-167236 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:167218-167237 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:167349-167368 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:167389-167408 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:167439-167458 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:167450-167469 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:167476-167495 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:167474-167493 Msa1354360:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:167516-167535 Msa1354360:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:167549-167568 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:167781-167800 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:167799-167818 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:167834-167853 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:167875-167894 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:167872-167891 Msa1354360:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:167920-167939 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:167948-167967 Msa1354360:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:167949-167968 Msa1354360:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:167956-167975 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:168059-168078 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:168070-168089 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:168070-168089 Msa1354360:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:168135-168154 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:168183-168202 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:168198-168217 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:168200-168219 Msa1354360:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:166904-166923 Msa1354360:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:166945-166964 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:166942-166961 Msa1354360:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:166943-166962 Msa1354360:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:167207-167226 Msa1354360:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:167217-167236 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:167218-167237 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:167349-167368 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:167389-167408 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:167439-167458 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:167450-167469 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:167476-167495 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:167474-167493 Msa1354360:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:167516-167535 Msa1354360:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:167549-167568 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:167781-167800 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:167799-167818 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:167834-167853 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:167875-167894 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:167872-167891 Msa1354360:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:167920-167939 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:167948-167967 Msa1354360:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:167949-167968 Msa1354360:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:167956-167975 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:168059-168078 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:168070-168089 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:168070-168089 Msa1354360:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:168135-168154 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:168183-168202 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:168198-168217 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:168200-168219 Msa1354360:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:166814-166833 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:166946-166965 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:166950-166969 Msa1354360:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:167075-167094 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:167182-167201 Msa1354360:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:167183-167202 Msa1354360:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:167219-167238 Msa1354360:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:167222-167241 Msa1354360:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:167265-167284 Msa1354360:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:167325-167344 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:167338-167357 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:167339-167358 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:167353-167372 Msa1354360:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:167383-167402 Msa1354360:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:167388-167407 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:167388-167407 Msa1354360:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:167394-167413 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:167415-167434 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:167417-167436 Msa1354360:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:167423-167442 Msa1354360:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:167433-167452 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:167434-167453 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:167488-167507 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:167563-167582 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:167568-167587 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:167567-167586 Msa1354360:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:167568-167587 Msa1354360:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:167573-167592 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:167658-167677 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:167719-167738 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:167717-167736 Msa1354360:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:167727-167746 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:167750-167769 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:167758-167777 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:167759-167778 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:167768-167787 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:167769-167788 Msa1354360:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:167770-167789 Msa1354360:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:167815-167834 Msa1354360:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:167823-167842 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:167825-167844 Msa1354360:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:167835-167854 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:167832-167851 Msa1354360:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:167909-167928 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:167933-167952 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:167957-167976 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:167963-167982 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:168071-168090 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:168071-168090 Msa1354360:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:168084-168103 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:168175-168194 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:168199-168218 Msa1354360:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:166814-166833 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:166946-166965 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:166950-166969 Msa1354360:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:167075-167094 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:167182-167201 Msa1354360:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:167183-167202 Msa1354360:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:167219-167238 Msa1354360:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:167222-167241 Msa1354360:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:167265-167284 Msa1354360:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:167325-167344 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:167338-167357 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:167339-167358 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:167353-167372 Msa1354360:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:167383-167402 Msa1354360:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:167388-167407 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:167388-167407 Msa1354360:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:167394-167413 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:167415-167434 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:167417-167436 Msa1354360:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:167423-167442 Msa1354360:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:167433-167452 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:167434-167453 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:167488-167507 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:167563-167582 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:167568-167587 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:167567-167586 Msa1354360:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:167568-167587 Msa1354360:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:167573-167592 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:167658-167677 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:167719-167738 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:167717-167736 Msa1354360:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:167727-167746 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:167750-167769 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:167758-167777 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:167759-167778 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:167768-167787 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:167769-167788 Msa1354360:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:167770-167789 Msa1354360:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:167815-167834 Msa1354360:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:167823-167842 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:167825-167844 Msa1354360:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:167835-167854 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:167832-167851 Msa1354360:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:167909-167928 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:167933-167952 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:167957-167976 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:167963-167982 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:168071-168090 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:168071-168090 Msa1354360:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:168084-168103 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:168175-168194 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:168199-168218 Msa1354360:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:166802-166821 Msa1354360:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:166923-166942 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:166930-166949 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:166956-166975 Msa1354360:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:167184-167203 Msa1354360:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:167229-167248 Msa1354360:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:167230-167249 Msa1354360:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:167243-167262 Msa1354360:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:167264-167283 Msa1354360:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:167309-167328 Msa1354360:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:167330-167349 Msa1354360:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:167384-167403 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:167382-167401 Msa1354360:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:167572-167591 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:167569-167588 Msa1354360:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:167649-167668 Msa1354360:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:167675-167694 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:167673-167692 Msa1354360:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:167674-167693 Msa1354360:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:167716-167735 Msa1354360:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:167720-167739 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:167773-167792 Msa1354360:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:167778-167797 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:167905-167924 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:167906-167925 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:167907-167926 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:167908-167927 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:167929-167948 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:167936-167955 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:167989-168008 Msa1354360:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:168004-168023 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:168047-168066 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:168075-168094 Msa1354360:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:168091-168110 Msa1354360:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:168138-168157 Msa1354360:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:168205-168224 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:168204-168223 Msa1354360:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:166802-166821 Msa1354360:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:166923-166942 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:166930-166949 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:166956-166975 Msa1354360:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:167184-167203 Msa1354360:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:167229-167248 Msa1354360:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:167230-167249 Msa1354360:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:167243-167262 Msa1354360:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:167264-167283 Msa1354360:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:167309-167328 Msa1354360:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:167330-167349 Msa1354360:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:167384-167403 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:167382-167401 Msa1354360:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:167572-167591 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:167569-167588 Msa1354360:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:167649-167668 Msa1354360:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:167675-167694 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:167673-167692 Msa1354360:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:167674-167693 Msa1354360:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:167716-167735 Msa1354360:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:167720-167739 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:167773-167792 Msa1354360:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:167778-167797 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:167905-167924 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:167906-167925 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:167907-167926 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:167908-167927 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:167929-167948 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:167936-167955 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:167989-168008 Msa1354360:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:168004-168023 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:168047-168066 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:168075-168094 Msa1354360:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:168091-168110 Msa1354360:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:168138-168157 Msa1354360:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:168205-168224 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:168204-168223 Msa1354360:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:167199-167218 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:167200-167219 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:167201-167220 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:167228-167247 Msa1354360:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:167237-167256 Msa1354360:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:167241-167260 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:167320-167339 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:167367-167386 Msa1354360:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:167494-167513 Msa1354360:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:167534-167553 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:167535-167554 Msa1354360:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:167629-167648 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:167630-167649 Msa1354360:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:167643-167662 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:167644-167663 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:167648-167667 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:167677-167696 Msa1354360:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:167678-167697 Msa1354360:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:167686-167705 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:167732-167751 Msa1354360:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:167743-167762 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:167787-167806 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:167904-167923 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:167925-167944 Msa1354360:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:168052-168071 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:168139-168158 Msa1354360:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:168169-168188 Msa1354360:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:168223-168242 Msa1354360:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:167199-167218 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:167200-167219 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:167201-167220 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:167228-167247 Msa1354360:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:167237-167256 Msa1354360:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:167241-167260 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:167320-167339 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:167367-167386 Msa1354360:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:167494-167513 Msa1354360:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:167534-167553 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:167535-167554 Msa1354360:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:167629-167648 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:167630-167649 Msa1354360:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:167643-167662 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:167644-167663 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:167648-167667 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:167677-167696 Msa1354360:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:167678-167697 Msa1354360:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:167686-167705 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:167732-167751 Msa1354360:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:167743-167762 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:167787-167806 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:167904-167923 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:167925-167944 Msa1354360:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:168052-168071 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:168139-168158 Msa1354360:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:168169-168188 Msa1354360:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:168223-168242 Msa1354360:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:167195-167214 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:167372-167391 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:167639-167658 Msa1354360:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:167687-167706 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:167739-167758 Msa1354360:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:167887-167906 Msa1354360:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:168140-168159 Msa1354360:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:168150-168169 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:168153-168172 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:168153-168172 Msa1354360:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:167195-167214 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:167372-167391 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:167639-167658 Msa1354360:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:167687-167706 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:167739-167758 Msa1354360:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:167887-167906 Msa1354360:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:168140-168159 Msa1354360:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:168150-168169 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:168153-168172 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:168153-168172 Msa1354360:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:167891-167910 Msa1354360:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:168146-168165 Msa1354360:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:168160-168179 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:168211-168230 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:168215-168234 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:167891-167910 Msa1354360:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:168146-168165 Msa1354360:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:168160-168179 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:168211-168230 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:168215-168234 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:167894-167913 Msa1354360:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:167894-167913 Msa1354360:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 166795 168280 166795 ID=Msa1354360;Name=Msa1354360
tig0014543 mRNA 166795 168280 166795 ID=Msa1354360-mRNA-1;Parent=Msa1354360;Name=Msa1354360-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 166795 166851 166795 ID=Msa1354360-mRNA-1:exon:9092;Parent=Msa1354360-mRNA-1
tig0014543 exon 166970 167044 166970 ID=Msa1354360-mRNA-1:exon:9093;Parent=Msa1354360-mRNA-1
tig0014543 exon 167204 167282 167204 ID=Msa1354360-mRNA-1:exon:9094;Parent=Msa1354360-mRNA-1
tig0014543 exon 167404 167614 167404 ID=Msa1354360-mRNA-1:exon:9095;Parent=Msa1354360-mRNA-1
tig0014543 exon 167709 167853 167709 ID=Msa1354360-mRNA-1:exon:9096;Parent=Msa1354360-mRNA-1
tig0014543 exon 168005 168280 168005 ID=Msa1354360-mRNA-1:exon:9097;Parent=Msa1354360-mRNA-1
tig0014543 CDS 166795 166851 166795 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543 CDS 166970 167044 166970 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543 CDS 167204 167282 167204 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543 CDS 167404 167614 167404 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543 CDS 167709 167853 167709 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
tig0014543 CDS 168005 168280 168005 ID=Msa1354360-mRNA-1:cds;Parent=Msa1354360-mRNA-1
Gene Sequence

>Msa1354360

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354360

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*