AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0566280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566280 MtrunA17_Chr8g0380731 94.708 359 18 1 1 358 1 359 0.0 678
Msa0566280 MtrunA17_Chr8g0380741 84.637 358 55 0 1 358 1 358 0.0 606
Msa0566280 MtrunA17_Chr8g0380751 71.812 298 84 0 31 328 3 300 1.50e-154 437
Msa0566280 MtrunA17_Chr4g0030791 41.573 356 206 2 1 356 1 354 1.33e-102 306
Msa0566280 MtrunA17_Chr4g0036721 41.292 356 207 2 1 356 1 354 1.35e-101 303
Msa0566280 MtrunA17_Chr4g0030781 41.011 356 208 2 1 356 1 354 3.67e-101 303
Msa0566280 MtrunA17_Chr4g0014171 41.292 356 207 2 1 356 1 354 8.56e-101 301
Msa0566280 MtrunA17_Chr5g0405881 32.549 255 129 4 96 348 33 246 2.48e-35 129
Msa0566280 MtrunA17_Chr1g0185841 33.803 142 80 4 202 333 415 552 1.16e-11 65.9
Msa0566280 MtrunA17_Chr1g0185811 37.736 106 62 2 202 307 431 532 1.79e-11 65.5
Msa0566280 MtrunA17_Chr1g0185821 36.275 102 64 1 206 307 401 501 2.81e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0566280 AT1G07750.1 40.845 355 206 3 1 355 1 351 2.26e-96 291
Msa0566280 AT2G28680.1 40.616 357 210 2 1 357 1 355 7.96e-96 289
Msa0566280 AT1G03890.1 24.936 389 222 13 32 357 67 448 5.52e-20 91.3
Msa0566280 AT1G03880.1 22.716 405 241 10 13 351 43 441 1.24e-18 87.4
Msa0566280 AT5G44120.3 23.188 414 235 14 13 351 49 454 4.32e-17 82.8
Msa0566280 AT5G44120.1 32.877 146 97 1 206 351 123 267 3.23e-14 72.8
Msa0566280 AT5G44120.2 32.877 146 97 1 206 351 206 350 7.06e-14 72.4
Msa0566280 AT4G28520.3 31.293 147 100 1 205 351 289 434 1.28e-12 68.9
Msa0566280 AT4G28520.1 31.293 147 100 1 205 351 360 505 1.64e-12 68.9

Find 103 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCTTATTGTAAGCATAAT+TGG 0.126568 4_1:-67319249 None:intergenic
GATCTTAACATTATATTTCT+TGG 0.148846 4_1:+67321401 Msa0566280:CDS
TCCACTCATAAGAAATTTAT+TGG 0.149911 4_1:-67322421 None:intergenic
TTGTGACTAATCCCACATTT+TGG 0.188452 4_1:-67321685 None:intergenic
CGATAATTAAAATTTATTAA+TGG 0.209904 4_1:-67322565 None:intergenic
ACTTGAACCTAATGCTATTA+AGG 0.231472 4_1:+67321769 Msa0566280:CDS
GCTGAATCCCAGGGGTAATT+AGG 0.249890 4_1:-67321802 None:intergenic
AACCCAACATCCTTAATAAA+AGG 0.256810 4_1:-67321728 None:intergenic
ATCCAATTATGCTTACAATA+AGG 0.264684 4_1:+67319247 Msa0566280:five_prime_UTR
AAGCTAACACAAAGCCAAAA+AGG 0.292183 4_1:+67321554 Msa0566280:CDS
AGGAAAATCTTTATCCGTTA+AGG 0.313076 4_1:-67321708 None:intergenic
TGCTAAAACACCATATATTA+AGG 0.317069 4_1:+67321661 Msa0566280:CDS
AGCAACGAACTCAGCAATAT+TGG 0.322815 4_1:-67319469 None:intergenic
TATAAACAAGTCAAACTAAA+TGG 0.330642 4_1:-67322388 None:intergenic
CTAGAAGAAATCAATGGATT+TGG 0.338018 4_1:+67320821 Msa0566280:exon
GTGATAATCAAGTTAGAAAA+AGG 0.339715 4_1:+67321581 Msa0566280:CDS
TCCAATTATGCTTACAATAA+GGG 0.343288 4_1:+67319248 Msa0566280:five_prime_UTR
TACCTATTGGAGGTGTTTCA+TGG 0.356456 4_1:+67321357 Msa0566280:CDS
TTTGTGGTTGCTAAAGTTGC+TGG 0.378074 4_1:+67321935 Msa0566280:CDS
ATGGTGGTGGTTACTACATT+TGG 0.379198 4_1:+67320883 Msa0566280:CDS
ATACAACTCTACCCACCATT+TGG 0.385834 4_1:-67322523 None:intergenic
ATAGAAATTGTGGGATTGAA+TGG 0.390973 4_1:+67321854 Msa0566280:CDS
CCACTCATAAGAAATTTATT+GGG 0.391366 4_1:-67322420 None:intergenic
GAAGGTGCCTTAATAGCATT+AGG 0.400052 4_1:-67321776 None:intergenic
CATAAACAAAGTCTTTAGTT+AGG 0.401436 4_1:-67321631 None:intergenic
ACTTCAATAGCTCATGTTCC+AGG 0.412111 4_1:+67321428 Msa0566280:CDS
ACCTATGCCTAAGCCACAAT+TGG 0.420447 4_1:+67321607 Msa0566280:CDS
CCCAATAAATTTCTTATGAG+TGG 0.423152 4_1:+67322420 Msa0566280:three_prime_UTR
ATTTACATTGCTAGAGGAAG+TGG 0.424012 4_1:+67321827 Msa0566280:CDS
TGAATATTGATACGATTAGC+TGG 0.425569 4_1:-67319290 None:intergenic
AAGTTCTCAAGTTCAAGTTT+TGG 0.426929 4_1:+67320908 Msa0566280:CDS
TACAACTCTACCCACCATTT+GGG 0.435680 4_1:-67322522 None:intergenic
TAGCCGGAGAGACATCAGTA+TGG 0.435918 4_1:+67322259 Msa0566280:CDS
GCAGGGACTGATGGCGTAGT+TGG 0.443394 4_1:+67321269 Msa0566280:intron
ATTAATAAACCCTTCCCAAA+TGG 0.445272 4_1:+67322508 Msa0566280:three_prime_UTR
GTTAGGTCCAATTGTGGCTT+AGG 0.462868 4_1:-67321614 None:intergenic
GTCAACTTGTTCTTCAGCCA+AGG 0.466314 4_1:+67320952 Msa0566280:CDS
GGGATTAGTCACAACCTTAA+CGG 0.468943 4_1:+67321694 Msa0566280:CDS
AGCAATGGTTGTGCTGTCTT+CGG 0.471177 4_1:-67320852 None:intergenic
CCAGGGGTAATTAGGTTTGA+AGG 0.471443 4_1:-67321794 None:intergenic
GCTAAAGTTGCTGGTGAAGA+AGG 0.483064 4_1:+67321944 Msa0566280:CDS
GATGTCATACCTGTACCTAT+TGG 0.485348 4_1:+67321344 Msa0566280:CDS
TGTCTTGGATGCTCAAGTTA+AGG 0.494376 4_1:+67321883 Msa0566280:CDS
AAAGTGGGTTATGTCATAGA+AGG 0.498483 4_1:+67321008 Msa0566280:CDS
CCTTCAAACCTAATTACCCC+TGG 0.503492 4_1:+67321794 Msa0566280:CDS
CACCATGAAACACCTCCAAT+AGG 0.508936 4_1:-67321359 None:intergenic
AATGAGACTTGTGGTTTCTG+TGG 0.520574 4_1:-67322358 None:intergenic
GAGAATAAGCCTCTCATGGT+TGG 0.528668 4_1:-67322652 None:intergenic
ATGTAAATTAGCTGAATCCC+AGG 0.529324 4_1:-67321812 None:intergenic
AGCCGGAGAGACATCAGTAT+GGG 0.531399 4_1:+67322260 Msa0566280:CDS
AATAAACCCTTCCCAAATGG+TGG 0.531487 4_1:+67322511 Msa0566280:three_prime_UTR
AACAAGTCAAACTAAATGGT+AGG 0.531603 4_1:-67322384 None:intergenic
AAAGACACTTGTTGCACAGT+AGG 0.532747 4_1:-67322294 None:intergenic
GTTTCATGGTGGTTCAATGA+TGG 0.534589 4_1:+67321371 Msa0566280:CDS
GAATATTGATACGATTAGCT+GGG 0.538781 4_1:-67319289 None:intergenic
CAACCATTGCTTGAGGGAGA+TGG 0.544530 4_1:+67320864 Msa0566280:CDS
GACTGATGGCGTAGTTGGAA+TGG 0.544651 4_1:+67321274 Msa0566280:CDS
CAAAGGCTAGAAGAAATCAA+TGG 0.544738 4_1:+67320815 Msa0566280:intron
GCTAAGACCAATGTTGGTGC+TGG 0.545292 4_1:+67320930 Msa0566280:CDS
TCAACTTGTTCTTCAGCCAA+GGG 0.545644 4_1:+67320953 Msa0566280:CDS
ATTGAATGGAAAACGTGTCT+TGG 0.545710 4_1:+67321868 Msa0566280:CDS
TTGGCAAACGCAGGGACTGA+TGG 0.551265 4_1:+67321260 Msa0566280:intron
CTCTACCCACCATTTGGGAA+GGG 0.551588 4_1:-67322517 None:intergenic
TTGGATGCTCAAGTTAAGGC+TGG 0.552687 4_1:+67321887 Msa0566280:CDS
TTGTTCGAATCTGCATAATG+AGG 0.553966 4_1:-67320987 None:intergenic
CCTTTGTTTGAAGAGTTAGC+CGG 0.556322 4_1:+67322243 Msa0566280:CDS
CAGCTAATTTACATTGCTAG+AGG 0.560034 4_1:+67321821 Msa0566280:CDS
GTCATACCTGTACCTATTGG+AGG 0.560557 4_1:+67321347 Msa0566280:CDS
TCCAATTGTGGCTTAGGCAT+AGG 0.563240 4_1:-67321608 None:intergenic
TTGCTTGAGGGAGATGGTGG+TGG 0.563550 4_1:+67320870 Msa0566280:CDS
CTTCAAACCTAATTACCCCT+GGG 0.564566 4_1:+67321795 Msa0566280:CDS
TCCCCATACTGATGTCTCTC+CGG 0.565683 4_1:-67322262 None:intergenic
ATATATTAAGGCCCAAAATG+TGG 0.568201 4_1:+67321673 Msa0566280:CDS
ACAGCACAACCATTGCTTGA+GGG 0.569100 4_1:+67320858 Msa0566280:CDS
AAAGTCCTTGAACACCACTT+AGG 0.569759 4_1:-67321469 None:intergenic
AGTTGCTGGTGAAGAAGGAA+TGG 0.570497 4_1:+67321949 Msa0566280:CDS
GAAACACCTCCAATAGGTAC+AGG 0.571470 4_1:-67321353 None:intergenic
ACAAGTCAAACTAAATGGTA+GGG 0.575189 4_1:-67322383 None:intergenic
TCTTTAGTTAGGTCCAATTG+TGG 0.584862 4_1:-67321620 None:intergenic
ACTCTACCCACCATTTGGGA+AGG 0.584895 4_1:-67322518 None:intergenic
TATATTAAGGCCCAAAATGT+GGG 0.592612 4_1:+67321674 Msa0566280:CDS
CCACCATCTCCCTCAAGCAA+TGG 0.609709 4_1:-67320867 None:intergenic
TGAGGAAGAGCAAATCCCCT+TGG 0.612076 4_1:-67320969 None:intergenic
TATGCAGATTCGAACAAAGT+GGG 0.614043 4_1:+67320993 Msa0566280:CDS
GGAATGGTACTCCCCAACAC+TGG 0.616715 4_1:+67321290 Msa0566280:CDS
TACGCATCAAGATCAATCGC+AGG 0.619713 4_1:+67319510 Msa0566280:five_prime_UTR
ATAAACCCTTCCCAAATGGT+GGG 0.621623 4_1:+67322512 Msa0566280:three_prime_UTR
GGTAGGGAGAATGAGACTTG+TGG 0.625569 4_1:-67322367 None:intergenic
TTATGCAGATTCGAACAAAG+TGG 0.626214 4_1:+67320992 Msa0566280:CDS
CAACTTGTTCTTCAGCCAAG+GGG 0.631432 4_1:+67320954 Msa0566280:CDS
ATGTGAATTGTGAAACGACA+TGG 0.633456 4_1:+67322625 Msa0566280:three_prime_UTR
AAGTTGACCAGCACCAACAT+TGG 0.633587 4_1:-67320937 None:intergenic
CCGGCTAACTCTTCAAACAA+AGG 0.634501 4_1:-67322243 None:intergenic
TGTAAATTAGCTGAATCCCA+GGG 0.639342 4_1:-67321811 None:intergenic
GACAGCACAACCATTGCTTG+AGG 0.639965 4_1:+67320857 Msa0566280:CDS
CTATTGGAGGTGTTTCATGG+TGG 0.653727 4_1:+67321360 Msa0566280:CDS
CCATTGCTTGAGGGAGATGG+TGG 0.656696 4_1:+67320867 Msa0566280:CDS
TTGTATGCATGATGTTACAC+AGG 0.657939 4_1:+67322540 Msa0566280:three_prime_UTR
CGTGAATGCGTTGAAGACTG+AGG 0.665241 4_1:-67319431 None:intergenic
TTGTTGCACAGTAGGTGACA+AGG 0.665977 4_1:-67322286 None:intergenic
GCCGGAGAGACATCAGTATG+GGG 0.687095 4_1:+67322261 Msa0566280:CDS
GTGAATGCGTTGAAGACTGA+GGG 0.696537 4_1:-67319430 None:intergenic
GTAAATTAGCTGAATCCCAG+GGG 0.719018 4_1:-67321810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATATGAATTTAATAATTT+TGG + chr4_1:67319553-67319572 Msa0566280:intron 10.0%
!!! ATTTGAAATTATTTTAGATT+TGG + chr4_1:67322156-67322175 Msa0566280:intron 10.0%
!!! TTTTTTTTATTGAATATGTA+TGG + chr4_1:67322447-67322466 Msa0566280:intron 10.0%
!! CGATAATTAAAATTTATTAA+TGG - chr4_1:67322568-67322587 None:intergenic 10.0%
!!! AATCAAAAAATTGTTTTTGA+AGG - chr4_1:67319843-67319862 None:intergenic 15.0%
!!! TTCAAAAACAATTTTTTGAT+TGG + chr4_1:67319842-67319861 Msa0566280:intron 15.0%
!! ATAATAAAATGAATCCTAAT+TGG + chr4_1:67319872-67319891 Msa0566280:intron 15.0%
!! TCAAAAAAATTAATATTGTG+AGG + chr4_1:67320199-67320218 Msa0566280:intron 15.0%
!!! AAATAGGAGTATATTTTTTA+AGG + chr4_1:67320413-67320432 Msa0566280:intron 15.0%
!!! AATAGGAGTATATTTTTTAA+GGG + chr4_1:67320414-67320433 Msa0566280:intron 15.0%
!! TTCACGTAATAATTAAAAAA+TGG - chr4_1:67320619-67320638 None:intergenic 15.0%
!!! ATACAATTTTAATAAAGATG+AGG + chr4_1:67321526-67321545 Msa0566280:CDS 15.0%
!!! TAAAGATTTTCCTTTTATTA+AGG + chr4_1:67321718-67321737 Msa0566280:CDS 15.0%
!!! TTGGTTTTTCTTATATTTTG+TGG + chr4_1:67319572-67319591 Msa0566280:intron 20.0%
!!! AGTTATAGACTTTTATTTGA+TGG + chr4_1:67319616-67319635 Msa0566280:intron 20.0%
!! CAAAACAAAACTTCTATTTA+TGG - chr4_1:67320479-67320498 None:intergenic 20.0%
!!! TTTTTACATATAATTGTGTC+CGG + chr4_1:67320696-67320715 Msa0566280:intron 20.0%
!!! ATTGCTTTTTGAACTAAAAA+TGG + chr4_1:67320755-67320774 Msa0566280:intron 20.0%
!!! AATATTTTTTTCATGAGCAA+AGG + chr4_1:67320798-67320817 Msa0566280:intron 20.0%
!! GATCTTAACATTATATTTCT+TGG + chr4_1:67321401-67321420 Msa0566280:CDS 20.0%
!!! TGAATCAAATGATTTTAAGT+TGG - chr4_1:67322129-67322148 None:intergenic 20.0%
!! TATAAACAAGTCAAACTAAA+TGG - chr4_1:67322391-67322410 None:intergenic 20.0%
!! TGTATGGAATTAATGTAATA+AGG + chr4_1:67322463-67322482 Msa0566280:intron 20.0%
! ATCCAATTATGCTTACAATA+AGG + chr4_1:67319247-67319266 Msa0566280:five_prime_UTR 25.0%
! TCCAATTATGCTTACAATAA+GGG + chr4_1:67319248-67319267 Msa0566280:five_prime_UTR 25.0%
!!! GTGATTGAATTTGTTTTTTG+TGG - chr4_1:67319327-67319346 None:intergenic 25.0%
!!! TTTCTTAGTTTGTTAAAGAC+AGG - chr4_1:67319984-67320003 None:intergenic 25.0%
! TACTAACTTTCACACTTATT+AGG - chr4_1:67320672-67320691 None:intergenic 25.0%
! AACACACAATATATACTATC+CGG - chr4_1:67320718-67320737 None:intergenic 25.0%
! TTATCTAAATGATGATCTCT+TGG + chr4_1:67321073-67321092 Msa0566280:intron 25.0%
! ATCACTTATTTGGTCAAATT+TGG + chr4_1:67321241-67321260 Msa0566280:intron 25.0%
! AAAAAATAAGTGAATTCTCC+TGG - chr4_1:67321449-67321468 None:intergenic 25.0%
!!! TTCACTTATTTTTTCCTAAG+TGG + chr4_1:67321455-67321474 Msa0566280:CDS 25.0%
! GTGATAATCAAGTTAGAAAA+AGG + chr4_1:67321581-67321600 Msa0566280:CDS 25.0%
! CATAAACAAAGTCTTTAGTT+AGG - chr4_1:67321634-67321653 None:intergenic 25.0%
! TGCTAAAACACCATATATTA+AGG + chr4_1:67321661-67321680 Msa0566280:CDS 25.0%
!! TTTCCTTTTATTAAGGATGT+TGG + chr4_1:67321725-67321744 Msa0566280:CDS 25.0%
!! TTCCTTTTATTAAGGATGTT+GGG + chr4_1:67321726-67321745 Msa0566280:CDS 25.0%
! AAGTGGAAAAATAGAAATTG+TGG + chr4_1:67321844-67321863 Msa0566280:CDS 25.0%
! AGTGGAAAAATAGAAATTGT+GGG + chr4_1:67321845-67321864 Msa0566280:CDS 25.0%
! TGGATGAAAATTGAATTCTT+CGG - chr4_1:67322109-67322128 None:intergenic 25.0%
! CCACTCATAAGAAATTTATT+GGG - chr4_1:67322423-67322442 None:intergenic 25.0%
! TCCACTCATAAGAAATTTAT+TGG - chr4_1:67322424-67322443 None:intergenic 25.0%
TCCCTTATTGTAAGCATAAT+TGG - chr4_1:67319252-67319271 None:intergenic 30.0%
! GAATATTGATACGATTAGCT+GGG - chr4_1:67319292-67319311 None:intergenic 30.0%
TGAATATTGATACGATTAGC+TGG - chr4_1:67319293-67319312 None:intergenic 30.0%
AAAATGAATCCTAATTGGCA+AGG + chr4_1:67319877-67319896 Msa0566280:intron 30.0%
TTGTTCAAATCTTGTGTTCT+TGG - chr4_1:67320045-67320064 None:intergenic 30.0%
GCAAAAATTAACTACTCGAT+TGG + chr4_1:67320176-67320195 Msa0566280:intron 30.0%
GGATAGTATATATTGTGTGT+TGG + chr4_1:67320717-67320736 Msa0566280:intron 30.0%
! CTAGAAGAAATCAATGGATT+TGG + chr4_1:67320821-67320840 Msa0566280:exon 30.0%
!! AAGTTCTCAAGTTCAAGTTT+TGG + chr4_1:67320908-67320927 Msa0566280:CDS 30.0%
GTATCACAACATCACTTATT+TGG + chr4_1:67321231-67321250 Msa0566280:intron 30.0%
!!! GTTGTTTTGAAGCTTAAGAA+AGG + chr4_1:67321320-67321339 Msa0566280:CDS 30.0%
! ACATTTTGGGCCTTAATATA+TGG - chr4_1:67321674-67321693 None:intergenic 30.0%
ATATATTAAGGCCCAAAATG+TGG + chr4_1:67321673-67321692 Msa0566280:CDS 30.0%
TATATTAAGGCCCAAAATGT+GGG + chr4_1:67321674-67321693 Msa0566280:CDS 30.0%
AGGAAAATCTTTATCCGTTA+AGG - chr4_1:67321711-67321730 None:intergenic 30.0%
AACCCAACATCCTTAATAAA+AGG - chr4_1:67321731-67321750 None:intergenic 30.0%
ACTTGAACCTAATGCTATTA+AGG + chr4_1:67321769-67321788 Msa0566280:CDS 30.0%
ATAGAAATTGTGGGATTGAA+TGG + chr4_1:67321854-67321873 Msa0566280:CDS 30.0%
TTAGCAACCACAAAAAATTG+TGG - chr4_1:67321929-67321948 None:intergenic 30.0%
! GTTTAAAACTCCAACTTACT+TGG - chr4_1:67321999-67322018 None:intergenic 30.0%
! AGATTTGGAGTACGTTATTA+AGG + chr4_1:67322171-67322190 Msa0566280:intron 30.0%
ACAAGTCAAACTAAATGGTA+GGG - chr4_1:67322386-67322405 None:intergenic 30.0%
AACAAGTCAAACTAAATGGT+AGG - chr4_1:67322387-67322406 None:intergenic 30.0%
CCCAATAAATTTCTTATGAG+TGG + chr4_1:67322420-67322439 Msa0566280:three_prime_UTR 30.0%
ATTAATAAACCCTTCCCAAA+TGG + chr4_1:67322508-67322527 Msa0566280:three_prime_UTR 30.0%
!! TGTTCTGCAGAAGTATCTAT+AGG + chr4_1:67319781-67319800 Msa0566280:intron 35.0%
GGAAAAGAACACAAATTACG+TGG + chr4_1:67319933-67319952 Msa0566280:intron 35.0%
AGGAAGAACAAATTCTTGGA+CGG - chr4_1:67319964-67319983 None:intergenic 35.0%
AGACAGGAAGAACAAATTCT+TGG - chr4_1:67319968-67319987 None:intergenic 35.0%
! TTAGTGGAGTGTCTATAGTA+AGG - chr4_1:67320281-67320300 None:intergenic 35.0%
! ATAGACACTCCACTAACTTT+TGG + chr4_1:67320285-67320304 Msa0566280:intron 35.0%
TGTTTGTGTCCAAAAGTTAG+TGG - chr4_1:67320297-67320316 None:intergenic 35.0%
!! ATTAGTTCTGCAAGATTGCT+TGG - chr4_1:67320362-67320381 None:intergenic 35.0%
TTCTTTAACCAATGTCCATG+AGG - chr4_1:67320455-67320474 None:intergenic 35.0%
GTATATATTGTGTGTTGGAG+TGG + chr4_1:67320722-67320741 Msa0566280:intron 35.0%
CAAAGGCTAGAAGAAATCAA+TGG + chr4_1:67320815-67320834 Msa0566280:intron 35.0%
TTGTTCGAATCTGCATAATG+AGG - chr4_1:67320990-67321009 None:intergenic 35.0%
TTATGCAGATTCGAACAAAG+TGG + chr4_1:67320992-67321011 Msa0566280:CDS 35.0%
TATGCAGATTCGAACAAAGT+GGG + chr4_1:67320993-67321012 Msa0566280:CDS 35.0%
!! AAAGTGGGTTATGTCATAGA+AGG + chr4_1:67321008-67321027 Msa0566280:CDS 35.0%
! ACAACTTCTTTTCCAGTGTT+GGG - chr4_1:67321305-67321324 None:intergenic 35.0%
! AACAACTTCTTTTCCAGTGT+TGG - chr4_1:67321306-67321325 None:intergenic 35.0%
! TTTTTCCTAAGTGGTGTTCA+AGG + chr4_1:67321464-67321483 Msa0566280:CDS 35.0%
AAGCTAACACAAAGCCAAAA+AGG + chr4_1:67321554-67321573 Msa0566280:CDS 35.0%
AGCTAACACAAAGCCAAAAA+GGG + chr4_1:67321555-67321574 Msa0566280:CDS 35.0%
! TGATTATCACAACCCCTTTT+TGG - chr4_1:67321571-67321590 None:intergenic 35.0%
TCTTTAGTTAGGTCCAATTG+TGG - chr4_1:67321623-67321642 None:intergenic 35.0%
! TGTGACTAATCCCACATTTT+GGG - chr4_1:67321687-67321706 None:intergenic 35.0%
! TTGTGACTAATCCCACATTT+TGG - chr4_1:67321688-67321707 None:intergenic 35.0%
TGTAAATTAGCTGAATCCCA+GGG - chr4_1:67321814-67321833 None:intergenic 35.0%
ATGTAAATTAGCTGAATCCC+AGG - chr4_1:67321815-67321834 None:intergenic 35.0%
CAGCTAATTTACATTGCTAG+AGG + chr4_1:67321821-67321840 Msa0566280:CDS 35.0%
ATTTACATTGCTAGAGGAAG+TGG + chr4_1:67321827-67321846 Msa0566280:CDS 35.0%
ATTGAATGGAAAACGTGTCT+TGG + chr4_1:67321868-67321887 Msa0566280:CDS 35.0%
!!! TGTTGTGCCACAATTTTTTG+TGG + chr4_1:67321919-67321938 Msa0566280:CDS 35.0%
TTGTATGCATGATGTTACAC+AGG + chr4_1:67322540-67322559 Msa0566280:three_prime_UTR 35.0%
ATGTGAATTGTGAAACGACA+TGG + chr4_1:67322625-67322644 Msa0566280:three_prime_UTR 35.0%
AGCAACGAACTCAGCAATAT+TGG - chr4_1:67319472-67319491 None:intergenic 40.0%
!! TGGAGCATCAGCTTAACTTT+TGG + chr4_1:67319636-67319655 Msa0566280:intron 40.0%
!! GGAGCATCAGCTTAACTTTT+GGG + chr4_1:67319637-67319656 Msa0566280:intron 40.0%
CATCAATGTCCTTGCCAATT+AGG - chr4_1:67319889-67319908 None:intergenic 40.0%
TTGGCAAGGACATTGATGTA+CGG + chr4_1:67319891-67319910 Msa0566280:intron 40.0%
GTACGGCGGATAACTATATA+AGG + chr4_1:67319908-67319927 Msa0566280:intron 40.0%
GGCGGATAACTATATAAGGA+AGG + chr4_1:67319912-67319931 Msa0566280:intron 40.0%
GGAAGAACAAATTCTTGGAC+GGG - chr4_1:67319963-67319982 None:intergenic 40.0%
TCTTGTTAATCAGTGCCTCA+TGG + chr4_1:67320437-67320456 Msa0566280:intron 40.0%
TTTCTTAACCAATGCCTCAG+AGG + chr4_1:67320571-67320590 Msa0566280:intron 40.0%
!! ATGGTGGTGGTTACTACATT+TGG + chr4_1:67320883-67320902 Msa0566280:CDS 40.0%
!!! GTTTTGGCTAAGACCAATGT+TGG + chr4_1:67320924-67320943 Msa0566280:CDS 40.0%
! TCAACTTGTTCTTCAGCCAA+GGG + chr4_1:67320953-67320972 Msa0566280:CDS 40.0%
! CAACTTCTTTTCCAGTGTTG+GGG - chr4_1:67321304-67321323 None:intergenic 40.0%
GATGTCATACCTGTACCTAT+TGG + chr4_1:67321344-67321363 Msa0566280:CDS 40.0%
!! TACCTATTGGAGGTGTTTCA+TGG + chr4_1:67321357-67321376 Msa0566280:CDS 40.0%
GTTTCATGGTGGTTCAATGA+TGG + chr4_1:67321371-67321390 Msa0566280:CDS 40.0%
ACTTCAATAGCTCATGTTCC+AGG + chr4_1:67321428-67321447 Msa0566280:CDS 40.0%
AAAGTCCTTGAACACCACTT+AGG - chr4_1:67321472-67321491 None:intergenic 40.0%
GCTAACACAAAGCCAAAAAG+GGG + chr4_1:67321556-67321575 Msa0566280:CDS 40.0%
!! GGGATTAGTCACAACCTTAA+CGG + chr4_1:67321694-67321713 Msa0566280:CDS 40.0%
!! GAAGGTGCCTTAATAGCATT+AGG - chr4_1:67321779-67321798 None:intergenic 40.0%
CTTCAAACCTAATTACCCCT+GGG + chr4_1:67321795-67321814 Msa0566280:CDS 40.0%
GTAAATTAGCTGAATCCCAG+GGG - chr4_1:67321813-67321832 None:intergenic 40.0%
TGTCTTGGATGCTCAAGTTA+AGG + chr4_1:67321883-67321902 Msa0566280:CDS 40.0%
TTTGTGGTTGCTAAAGTTGC+TGG + chr4_1:67321935-67321954 Msa0566280:CDS 40.0%
GTGACAACTACCAAGTAAGT+TGG + chr4_1:67321986-67322005 Msa0566280:intron 40.0%
! CCTTTGTTTGAAGAGTTAGC+CGG + chr4_1:67322243-67322262 Msa0566280:CDS 40.0%
! AAAGACACTTGTTGCACAGT+AGG - chr4_1:67322297-67322316 None:intergenic 40.0%
! GCAACAAGTGTCTTTTAACG+TGG + chr4_1:67322302-67322321 Msa0566280:CDS 40.0%
AATGAGACTTGTGGTTTCTG+TGG - chr4_1:67322361-67322380 None:intergenic 40.0%
AATAAACCCTTCCCAAATGG+TGG + chr4_1:67322511-67322530 Msa0566280:three_prime_UTR 40.0%
ATAAACCCTTCCCAAATGGT+GGG + chr4_1:67322512-67322531 Msa0566280:three_prime_UTR 40.0%
TACAACTCTACCCACCATTT+GGG - chr4_1:67322525-67322544 None:intergenic 40.0%
ATACAACTCTACCCACCATT+TGG - chr4_1:67322526-67322545 None:intergenic 40.0%
GTGAATGCGTTGAAGACTGA+GGG - chr4_1:67319433-67319452 None:intergenic 45.0%
TACGCATCAAGATCAATCGC+AGG + chr4_1:67319510-67319529 Msa0566280:five_prime_UTR 45.0%
AGAACAAATTCTTGGACGGG+TGG - chr4_1:67319960-67319979 None:intergenic 45.0%
! ATACATTCTGCTGAGTGCTG+AGG + chr4_1:67320103-67320122 Msa0566280:intron 45.0%
AATCAGTGCCTCATGGACAT+TGG + chr4_1:67320444-67320463 Msa0566280:intron 45.0%
AGCAATGGTTGTGCTGTCTT+CGG - chr4_1:67320855-67320874 None:intergenic 45.0%
ACAGCACAACCATTGCTTGA+GGG + chr4_1:67320858-67320877 Msa0566280:CDS 45.0%
AAGTTGACCAGCACCAACAT+TGG - chr4_1:67320940-67320959 None:intergenic 45.0%
! GTCAACTTGTTCTTCAGCCA+AGG + chr4_1:67320952-67320971 Msa0566280:CDS 45.0%
! CAACTTGTTCTTCAGCCAAG+GGG + chr4_1:67320954-67320973 Msa0566280:CDS 45.0%
TGGTCAAATTTGGCAAACGC+AGG + chr4_1:67321251-67321270 Msa0566280:intron 45.0%
GGTCAAATTTGGCAAACGCA+GGG + chr4_1:67321252-67321271 Msa0566280:intron 45.0%
GTCATACCTGTACCTATTGG+AGG + chr4_1:67321347-67321366 Msa0566280:CDS 45.0%
GAAACACCTCCAATAGGTAC+AGG - chr4_1:67321356-67321375 None:intergenic 45.0%
CACCATGAAACACCTCCAAT+AGG - chr4_1:67321362-67321381 None:intergenic 45.0%
!! CTATTGGAGGTGTTTCATGG+TGG + chr4_1:67321360-67321379 Msa0566280:CDS 45.0%
ACCTATGCCTAAGCCACAAT+TGG + chr4_1:67321607-67321626 Msa0566280:CDS 45.0%
TCCAATTGTGGCTTAGGCAT+AGG - chr4_1:67321611-67321630 None:intergenic 45.0%
GTTAGGTCCAATTGTGGCTT+AGG - chr4_1:67321617-67321636 None:intergenic 45.0%
CCAGGGGTAATTAGGTTTGA+AGG - chr4_1:67321797-67321816 None:intergenic 45.0%
CCTTCAAACCTAATTACCCC+TGG + chr4_1:67321794-67321813 Msa0566280:CDS 45.0%
TTGGATGCTCAAGTTAAGGC+TGG + chr4_1:67321887-67321906 Msa0566280:CDS 45.0%
GCTAAAGTTGCTGGTGAAGA+AGG + chr4_1:67321944-67321963 Msa0566280:CDS 45.0%
AGTTGCTGGTGAAGAAGGAA+TGG + chr4_1:67321949-67321968 Msa0566280:CDS 45.0%
CCGGCTAACTCTTCAAACAA+AGG - chr4_1:67322246-67322265 None:intergenic 45.0%
TTGTTGCACAGTAGGTGACA+AGG - chr4_1:67322289-67322308 None:intergenic 45.0%
!!! TATTATAAACAAAAATTTTA+TGG - chr4_1:67321210-67321229 None:intergenic 5.0%
CGTGAATGCGTTGAAGACTG+AGG - chr4_1:67319434-67319453 None:intergenic 50.0%
GCAAGGACATTGATGTACGG+CGG + chr4_1:67319894-67319913 Msa0566280:intron 50.0%
CATTATCATCGCGAGCAAGC+TGG + chr4_1:67320389-67320408 Msa0566280:intron 50.0%
TCGCGAGCAAGCTGGTAAAT+AGG + chr4_1:67320397-67320416 Msa0566280:intron 50.0%
TTAACCAATGCCTCAGAGGC+AGG + chr4_1:67320575-67320594 Msa0566280:intron 50.0%
TAACCAATGCCTCAGAGGCA+GGG + chr4_1:67320576-67320595 Msa0566280:intron 50.0%
GACAGCACAACCATTGCTTG+AGG + chr4_1:67320857-67320876 Msa0566280:CDS 50.0%
CAACCATTGCTTGAGGGAGA+TGG + chr4_1:67320864-67320883 Msa0566280:CDS 50.0%
GCTAAGACCAATGTTGGTGC+TGG + chr4_1:67320930-67320949 Msa0566280:CDS 50.0%
TGAGGAAGAGCAAATCCCCT+TGG - chr4_1:67320972-67320991 None:intergenic 50.0%
! GACTGATGGCGTAGTTGGAA+TGG + chr4_1:67321274-67321293 Msa0566280:CDS 50.0%
GCTGAATCCCAGGGGTAATT+AGG - chr4_1:67321805-67321824 None:intergenic 50.0%
TAGCCGGAGAGACATCAGTA+TGG + chr4_1:67322259-67322278 Msa0566280:CDS 50.0%
AGCCGGAGAGACATCAGTAT+GGG + chr4_1:67322260-67322279 Msa0566280:CDS 50.0%
TCCCCATACTGATGTCTCTC+CGG - chr4_1:67322265-67322284 None:intergenic 50.0%
GGTAGGGAGAATGAGACTTG+TGG - chr4_1:67322370-67322389 None:intergenic 50.0%
CTCTACCCACCATTTGGGAA+GGG - chr4_1:67322520-67322539 None:intergenic 50.0%
ACTCTACCCACCATTTGGGA+AGG - chr4_1:67322521-67322540 None:intergenic 50.0%
AACCAATGCCTCAGAGGCAG+GGG + chr4_1:67320577-67320596 Msa0566280:intron 55.0%
CCACCATCTCCCTCAAGCAA+TGG - chr4_1:67320870-67320889 None:intergenic 55.0%
CCATTGCTTGAGGGAGATGG+TGG + chr4_1:67320867-67320886 Msa0566280:CDS 55.0%
! TTGCTTGAGGGAGATGGTGG+TGG + chr4_1:67320870-67320889 Msa0566280:CDS 55.0%
TTGGCAAACGCAGGGACTGA+TGG + chr4_1:67321260-67321279 Msa0566280:intron 55.0%
GGAATGGTACTCCCCAACAC+TGG + chr4_1:67321290-67321309 Msa0566280:CDS 55.0%
GCCGGAGAGACATCAGTATG+GGG + chr4_1:67322261-67322280 Msa0566280:CDS 55.0%
!! TACCCCTGCCTCTGAGGCAT+TGG - chr4_1:67320582-67320601 None:intergenic 60.0%
AACCAGTACCCCTGCCTCTG+AGG - chr4_1:67320588-67320607 None:intergenic 60.0%
! GCAGGGACTGATGGCGTAGT+TGG + chr4_1:67321269-67321288 Msa0566280:intron 60.0%
! TGCCTCAGAGGCAGGGGTAC+TGG + chr4_1:67320583-67320602 Msa0566280:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 67319244 67322661 67319244 ID=Msa0566280;Name=Msa0566280
chr4_1 mRNA 67319244 67322661 67319244 ID=Msa0566280-mRNA-1;Parent=Msa0566280;Name=Msa0566280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=271|1|1|1|0.4|0.16|6|246|358
chr4_1 exon 67319244 67319337 67319244 ID=Msa0566280-mRNA-1:exon:22060;Parent=Msa0566280-mRNA-1
chr4_1 exon 67319369 67319531 67319369 ID=Msa0566280-mRNA-1:exon:22061;Parent=Msa0566280-mRNA-1
chr4_1 exon 67320820 67321029 67320820 ID=Msa0566280-mRNA-1:exon:22062;Parent=Msa0566280-mRNA-1
chr4_1 exon 67321273 67321999 67321273 ID=Msa0566280-mRNA-1:exon:22063;Parent=Msa0566280-mRNA-1
chr4_1 exon 67322242 67322463 67322242 ID=Msa0566280-mRNA-1:exon:22064;Parent=Msa0566280-mRNA-1
chr4_1 exon 67322484 67322661 67322484 ID=Msa0566280-mRNA-1:exon:22065;Parent=Msa0566280-mRNA-1
chr4_1 five_prime_UTR 67319244 67319337 67319244 ID=Msa0566280-mRNA-1:five_prime_utr;Parent=Msa0566280-mRNA-1
chr4_1 five_prime_UTR 67319369 67319531 67319369 ID=Msa0566280-mRNA-1:five_prime_utr;Parent=Msa0566280-mRNA-1
chr4_1 five_prime_UTR 67320820 67320833 67320820 ID=Msa0566280-mRNA-1:five_prime_utr;Parent=Msa0566280-mRNA-1
chr4_1 CDS 67320834 67321029 67320834 ID=Msa0566280-mRNA-1:cds;Parent=Msa0566280-mRNA-1
chr4_1 CDS 67321273 67321999 67321273 ID=Msa0566280-mRNA-1:cds;Parent=Msa0566280-mRNA-1
chr4_1 CDS 67322242 67322395 67322242 ID=Msa0566280-mRNA-1:cds;Parent=Msa0566280-mRNA-1
chr4_1 three_prime_UTR 67322396 67322463 67322396 ID=Msa0566280-mRNA-1:three_prime_utr;Parent=Msa0566280-mRNA-1
chr4_1 three_prime_UTR 67322484 67322661 67322484 ID=Msa0566280-mRNA-1:three_prime_utr;Parent=Msa0566280-mRNA-1
Gene Sequence

>Msa0566280

ATGGATTTGGATCTAACACCGAAGACAGCACAACCATTGCTTGAGGGAGATGGTGGTGGTTACTACATTTGGTTAAGTTCTCAAGTTCAAGTTTTGGCTAAGACCAATGTTGGTGCTGGTCAACTTGTTCTTCAGCCAAGGGGATTTGCTCTTCCTCATTATGCAGATTCGAACAAAGTGGGTTATGTCATAGAAGGGACTGATGGCGTAGTTGGAATGGTACTCCCCAACACTGGAAAAGAAGTTGTTTTGAAGCTTAAGAAAGGAGATGTCATACCTGTACCTATTGGAGGTGTTTCATGGTGGTTCAATGATGGTGAATCAGATCTTAACATTATATTTCTTGGAGAAACTTCAATAGCTCATGTTCCAGGAGAATTCACTTATTTTTTCCTAAGTGGTGTTCAAGGACTTTTATCAAGTTTCTCTAGTGAATTAATAAGCAAAGTATACAATTTTAATAAAGATGAGGTGAGCAAGCTAACACAAAGCCAAAAAGGGGTTGTGATAATCAAGTTAGAAAAAGGTCAACCTATGCCTAAGCCACAATTGGACCTAACTAAAGACTTTGTTTATGACATTGATGCTAAAACACCATATATTAAGGCCCAAAATGTGGGATTAGTCACAACCTTAACGGATAAAGATTTTCCTTTTATTAAGGATGTTGGGTTAAGTGTGATTAGAGTTAAACTTGAACCTAATGCTATTAAGGCACCTTCAAACCTAATTACCCCTGGGATTCAGCTAATTTACATTGCTAGAGGAAGTGGAAAAATAGAAATTGTGGGATTGAATGGAAAACGTGTCTTGGATGCTCAAGTTAAGGCTGGTCATTTGATTGTTGTGCCACAATTTTTTGTGGTTGCTAAAGTTGCTGGTGAAGAAGGAATGGAGAGTTACACTATTGTGACAACTACCAAACCTTTGTTTGAAGAGTTAGCCGGAGAGACATCAGTATGGGGAGCCTTGTCACCTACTGTGCAACAAGTGTCTTTTAACGTGGATTCTGAGTTTCAAAAACTTTTCATATCTAAGACCACAGAAACCACAAGTCTCATTCTCCCTACCATTTAG

Protein sequence

>Msa0566280

MDLDLTPKTAQPLLEGDGGGYYIWLSSQVQVLAKTNVGAGQLVLQPRGFALPHYADSNKVGYVIEGTDGVVGMVLPNTGKEVVLKLKKGDVIPVPIGGVSWWFNDGESDLNIIFLGETSIAHVPGEFTYFFLSGVQGLLSSFSSELISKVYNFNKDEVSKLTQSQKGVVIIKLEKGQPMPKPQLDLTKDFVYDIDAKTPYIKAQNVGLVTTLTDKDFPFIKDVGLSVIRVKLEPNAIKAPSNLITPGIQLIYIARGSGKIEIVGLNGKRVLDAQVKAGHLIVVPQFFVVAKVAGEEGMESYTIVTTTKPLFEELAGETSVWGALSPTVQQVSFNVDSEFQKLFISKTTETTSLILPTI*