AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366060 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366060 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366060 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1366060 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1366060 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0018442:-230612 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0018442:+231553 Msa1366060:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0018442:+231258 Msa1366060:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0018442:-230625 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0018442:+231012 Msa1366060:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0018442:-231588 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0018442:-231852 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0018442:+231207 Msa1366060:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0018442:+230991 Msa1366060:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0018442:-231524 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0018442:+231352 Msa1366060:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0018442:+231977 Msa1366060:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0018442:+231937 Msa1366060:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0018442:-232020 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0018442:-231384 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0018442:-231257 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0018442:+231351 Msa1366060:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0018442:+231259 Msa1366060:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0018442:+231930 Msa1366060:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0018442:+231003 Msa1366060:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0018442:+231044 Msa1366060:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0018442:-231986 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0018442:+231500 Msa1366060:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0018442:-231344 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0018442:+231983 Msa1366060:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0018442:-231289 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0018442:+231922 Msa1366060:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0018442:-231996 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0018442:+231988 Msa1366060:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0018442:+231923 Msa1366060:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0018442:+230782 Msa1366060:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0018442:+230565 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0018442:-231290 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0018442:+231953 Msa1366060:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0018442:-231220 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0018442:-231604 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0018442:-231231 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0018442:-231941 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0018442:+231501 Msa1366060:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0018442:+231609 Msa1366060:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0018442:-231353 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0018442:+232023 Msa1366060:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0018442:-230603 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0018442:-231022 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0018442:+231516 Msa1366060:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0018442:-231979 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0018442:+231043 Msa1366060:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0018442:+231892 Msa1366060:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0018442:+231027 Msa1366060:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0018442:-231851 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0018442:-231964 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0018442:-231888 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0018442:+230807 Msa1366060:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0018442:+231984 Msa1366060:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0018442:-231934 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0018442:-231828 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0018442:-231315 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0018442:+231013 Msa1366060:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0018442:-231587 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0018442:-231501 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0018442:-231889 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0018442:-231840 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0018442:-230811 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0018442:+231855 Msa1366060:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0018442:-231956 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0018442:+231908 Msa1366060:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0018442:-231540 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0018442:-231539 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0018442:+231353 Msa1366060:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0018442:+231616 Msa1366060:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0018442:-231256 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0018442:-231833 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0018442:-231330 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0018442:+231278 Msa1366060:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0018442:-231354 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0018442:-232019 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0018442:+231523 Msa1366060:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0018442:-231295 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0018442:-231931 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0018442:+231854 Msa1366060:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0018442:+231021 Msa1366060:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0018442:-231992 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0018442:-230999 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0018442:-231908 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0018442:+231297 Msa1366060:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0018442:-231865 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0018442:+231599 Msa1366060:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0018442:-231549 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0018442:-231500 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0018442:-231531 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0018442:+231014 Msa1366060:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0018442:-231916 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0018442:+231859 Msa1366060:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0018442:+230586 Msa1366060:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0018442:-231568 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0018442:-231214 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0018442:-231349 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0018442:-231215 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0018442:-231269 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0018442:-230998 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0018442:-232018 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0018442:-230595 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0018442:-231580 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0018442:+231045 Msa1366060:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0018442:-231963 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0018442:-231562 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0018442:+230570 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0018442:-231294 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0018442:-231800 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0018442:-231616 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0018442:+231875 Msa1366060:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0018442:+231201 Msa1366060:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0018442:-231508 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0018442:-231559 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0018442:-232017 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0018442:-231615 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0018442:-231196 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0018442:+231319 Msa1366060:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0018442:+231006 Msa1366060:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0018442:-231586 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0018442:+231924 Msa1366060:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0018442:+231300 Msa1366060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0018442:230782-230801 Msa1366060:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0018442:230782-230801 Msa1366060:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0018442:230906-230925 Msa1366060:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0018442:230947-230966 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0018442:231395-231414 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0018442:230906-230925 Msa1366060:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0018442:230947-230966 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0018442:231395-231414 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0018442:230656-230675 Msa1366060:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0018442:230911-230930 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0018442:231387-231406 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0018442:231396-231415 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0018442:232022-232041 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0018442:230656-230675 Msa1366060:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0018442:230911-230930 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0018442:231387-231406 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0018442:231396-231415 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0018442:232022-232041 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0018442:230615-230634 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0018442:230620-230639 Msa1366060:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0018442:230628-230647 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0018442:230720-230739 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0018442:230720-230739 Msa1366060:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0018442:230807-230826 Msa1366060:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0018442:230814-230833 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0018442:230823-230842 Msa1366060:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0018442:230837-230856 Msa1366060:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0018442:230901-230920 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0018442:230941-230960 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0018442:231044-231063 Msa1366060:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0018442:231292-231311 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0018442:231401-231420 Msa1366060:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0018442:231589-231608 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0018442:231590-231609 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0018442:231591-231610 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0018442:231803-231822 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0018442:231892-231911 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0018442:231892-231911 Msa1366060:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0018442:231908-231927 Msa1366060:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0018442:232021-232040 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0018442:232023-232042 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0018442:232023-232042 Msa1366060:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0018442:230615-230634 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0018442:230620-230639 Msa1366060:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0018442:230628-230647 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0018442:230720-230739 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0018442:230720-230739 Msa1366060:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0018442:230807-230826 Msa1366060:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0018442:230814-230833 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0018442:230823-230842 Msa1366060:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0018442:230837-230856 Msa1366060:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0018442:230901-230920 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0018442:230941-230960 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0018442:231044-231063 Msa1366060:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0018442:231292-231311 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0018442:231401-231420 Msa1366060:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0018442:231589-231608 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0018442:231590-231609 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0018442:231591-231610 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0018442:231803-231822 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0018442:231892-231911 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0018442:231892-231911 Msa1366060:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0018442:231908-231927 Msa1366060:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0018442:232021-232040 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0018442:232023-232042 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0018442:232023-232042 Msa1366060:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0018442:230606-230625 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0018442:230673-230692 Msa1366060:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0018442:230678-230697 Msa1366060:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0018442:230683-230702 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0018442:230721-230740 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0018442:230719-230738 Msa1366060:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0018442:230725-230744 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0018442:230724-230743 Msa1366060:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0018442:230725-230744 Msa1366060:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0018442:230846-230865 Msa1366060:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0018442:230875-230894 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0018442:231043-231062 Msa1366060:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0018442:231045-231064 Msa1366060:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0018442:231126-231145 Msa1366060:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0018442:231259-231278 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0018442:231259-231278 Msa1366060:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0018442:231293-231312 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0018442:231297-231316 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0018442:231298-231317 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0018442:231297-231316 Msa1366060:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0018442:231642-231661 Msa1366060:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0018442:231752-231771 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0018442:231753-231772 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0018442:231752-231771 Msa1366060:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0018442:231753-231772 Msa1366060:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0018442:231767-231786 Msa1366060:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0018442:231891-231910 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0018442:231911-231930 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0018442:231966-231985 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0018442:231977-231996 Msa1366060:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0018442:232020-232039 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0018442:232039-232058 Msa1366060:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0018442:230606-230625 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0018442:230673-230692 Msa1366060:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0018442:230678-230697 Msa1366060:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0018442:230683-230702 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0018442:230721-230740 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0018442:230719-230738 Msa1366060:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0018442:230725-230744 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0018442:230724-230743 Msa1366060:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0018442:230725-230744 Msa1366060:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0018442:230846-230865 Msa1366060:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0018442:230875-230894 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0018442:231043-231062 Msa1366060:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0018442:231045-231064 Msa1366060:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0018442:231126-231145 Msa1366060:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0018442:231259-231278 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0018442:231259-231278 Msa1366060:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0018442:231293-231312 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0018442:231297-231316 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0018442:231298-231317 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0018442:231297-231316 Msa1366060:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0018442:231642-231661 Msa1366060:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0018442:231752-231771 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0018442:231753-231772 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0018442:231752-231771 Msa1366060:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0018442:231753-231772 Msa1366060:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0018442:231767-231786 Msa1366060:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0018442:231891-231910 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0018442:231911-231930 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0018442:231966-231985 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0018442:231977-231996 Msa1366060:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0018442:232020-232039 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0018442:232039-232058 Msa1366060:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0018442:230688-230707 Msa1366060:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0018442:230729-230748 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0018442:230726-230745 Msa1366060:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0018442:230727-230746 Msa1366060:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0018442:230991-231010 Msa1366060:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0018442:231001-231020 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0018442:231002-231021 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0018442:231133-231152 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0018442:231173-231192 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0018442:231223-231242 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0018442:231234-231253 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0018442:231260-231279 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0018442:231258-231277 Msa1366060:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0018442:231300-231319 Msa1366060:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0018442:231333-231352 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0018442:231565-231584 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0018442:231583-231602 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0018442:231618-231637 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0018442:231659-231678 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0018442:231656-231675 Msa1366060:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0018442:231704-231723 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0018442:231732-231751 Msa1366060:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0018442:231733-231752 Msa1366060:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0018442:231740-231759 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0018442:231843-231862 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0018442:231854-231873 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0018442:231854-231873 Msa1366060:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0018442:231919-231938 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0018442:231967-231986 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0018442:231982-232001 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0018442:231984-232003 Msa1366060:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0018442:230688-230707 Msa1366060:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0018442:230729-230748 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0018442:230726-230745 Msa1366060:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0018442:230727-230746 Msa1366060:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0018442:230991-231010 Msa1366060:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0018442:231001-231020 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0018442:231002-231021 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0018442:231133-231152 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0018442:231173-231192 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0018442:231223-231242 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0018442:231234-231253 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0018442:231260-231279 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0018442:231258-231277 Msa1366060:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0018442:231300-231319 Msa1366060:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0018442:231333-231352 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0018442:231565-231584 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0018442:231583-231602 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0018442:231618-231637 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0018442:231659-231678 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0018442:231656-231675 Msa1366060:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0018442:231704-231723 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0018442:231732-231751 Msa1366060:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0018442:231733-231752 Msa1366060:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0018442:231740-231759 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0018442:231843-231862 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0018442:231854-231873 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0018442:231854-231873 Msa1366060:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0018442:231919-231938 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0018442:231967-231986 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0018442:231982-232001 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0018442:231984-232003 Msa1366060:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0018442:230598-230617 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0018442:230730-230749 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0018442:230734-230753 Msa1366060:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0018442:230859-230878 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0018442:230966-230985 Msa1366060:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0018442:230967-230986 Msa1366060:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0018442:231003-231022 Msa1366060:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0018442:231006-231025 Msa1366060:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0018442:231049-231068 Msa1366060:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0018442:231109-231128 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0018442:231122-231141 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0018442:231123-231142 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0018442:231137-231156 Msa1366060:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0018442:231167-231186 Msa1366060:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0018442:231172-231191 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0018442:231172-231191 Msa1366060:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0018442:231178-231197 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0018442:231199-231218 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0018442:231201-231220 Msa1366060:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0018442:231207-231226 Msa1366060:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0018442:231217-231236 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0018442:231218-231237 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0018442:231272-231291 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0018442:231347-231366 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0018442:231352-231371 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0018442:231351-231370 Msa1366060:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0018442:231352-231371 Msa1366060:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0018442:231357-231376 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0018442:231442-231461 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0018442:231503-231522 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0018442:231501-231520 Msa1366060:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0018442:231511-231530 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0018442:231534-231553 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0018442:231542-231561 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0018442:231543-231562 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0018442:231552-231571 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0018442:231553-231572 Msa1366060:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0018442:231554-231573 Msa1366060:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0018442:231599-231618 Msa1366060:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0018442:231607-231626 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0018442:231609-231628 Msa1366060:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0018442:231619-231638 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0018442:231616-231635 Msa1366060:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0018442:231693-231712 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0018442:231717-231736 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0018442:231741-231760 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0018442:231747-231766 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0018442:231855-231874 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0018442:231855-231874 Msa1366060:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0018442:231868-231887 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0018442:231959-231978 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0018442:231983-232002 Msa1366060:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0018442:230598-230617 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0018442:230730-230749 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0018442:230734-230753 Msa1366060:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0018442:230859-230878 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0018442:230966-230985 Msa1366060:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0018442:230967-230986 Msa1366060:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0018442:231003-231022 Msa1366060:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0018442:231006-231025 Msa1366060:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0018442:231049-231068 Msa1366060:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0018442:231109-231128 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0018442:231122-231141 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0018442:231123-231142 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0018442:231137-231156 Msa1366060:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0018442:231167-231186 Msa1366060:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0018442:231172-231191 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0018442:231172-231191 Msa1366060:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0018442:231178-231197 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0018442:231199-231218 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0018442:231201-231220 Msa1366060:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0018442:231207-231226 Msa1366060:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0018442:231217-231236 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0018442:231218-231237 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0018442:231272-231291 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0018442:231347-231366 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0018442:231352-231371 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0018442:231351-231370 Msa1366060:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0018442:231352-231371 Msa1366060:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0018442:231357-231376 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0018442:231442-231461 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0018442:231503-231522 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0018442:231501-231520 Msa1366060:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0018442:231511-231530 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0018442:231534-231553 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0018442:231542-231561 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0018442:231543-231562 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0018442:231552-231571 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0018442:231553-231572 Msa1366060:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0018442:231554-231573 Msa1366060:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0018442:231599-231618 Msa1366060:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0018442:231607-231626 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0018442:231609-231628 Msa1366060:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0018442:231619-231638 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0018442:231616-231635 Msa1366060:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0018442:231693-231712 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0018442:231717-231736 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0018442:231741-231760 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0018442:231747-231766 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0018442:231855-231874 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0018442:231855-231874 Msa1366060:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0018442:231868-231887 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0018442:231959-231978 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0018442:231983-232002 Msa1366060:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0018442:230586-230605 Msa1366060:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0018442:230707-230726 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0018442:230714-230733 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0018442:230740-230759 Msa1366060:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0018442:230968-230987 Msa1366060:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0018442:231013-231032 Msa1366060:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0018442:231014-231033 Msa1366060:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0018442:231027-231046 Msa1366060:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0018442:231048-231067 Msa1366060:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0018442:231093-231112 Msa1366060:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0018442:231114-231133 Msa1366060:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0018442:231168-231187 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0018442:231166-231185 Msa1366060:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0018442:231356-231375 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0018442:231353-231372 Msa1366060:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0018442:231433-231452 Msa1366060:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0018442:231459-231478 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0018442:231457-231476 Msa1366060:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0018442:231458-231477 Msa1366060:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0018442:231500-231519 Msa1366060:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0018442:231504-231523 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0018442:231557-231576 Msa1366060:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0018442:231562-231581 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0018442:231689-231708 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0018442:231690-231709 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0018442:231691-231710 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0018442:231692-231711 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0018442:231713-231732 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0018442:231720-231739 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0018442:231773-231792 Msa1366060:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0018442:231788-231807 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0018442:231831-231850 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0018442:231859-231878 Msa1366060:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0018442:231875-231894 Msa1366060:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0018442:231922-231941 Msa1366060:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0018442:231989-232008 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0018442:231988-232007 Msa1366060:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0018442:230586-230605 Msa1366060:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0018442:230707-230726 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0018442:230714-230733 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0018442:230740-230759 Msa1366060:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0018442:230968-230987 Msa1366060:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0018442:231013-231032 Msa1366060:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0018442:231014-231033 Msa1366060:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0018442:231027-231046 Msa1366060:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0018442:231048-231067 Msa1366060:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0018442:231093-231112 Msa1366060:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0018442:231114-231133 Msa1366060:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0018442:231168-231187 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0018442:231166-231185 Msa1366060:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0018442:231356-231375 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0018442:231353-231372 Msa1366060:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0018442:231433-231452 Msa1366060:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0018442:231459-231478 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0018442:231457-231476 Msa1366060:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0018442:231458-231477 Msa1366060:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0018442:231500-231519 Msa1366060:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0018442:231504-231523 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0018442:231557-231576 Msa1366060:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0018442:231562-231581 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0018442:231689-231708 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0018442:231690-231709 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0018442:231691-231710 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0018442:231692-231711 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0018442:231713-231732 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0018442:231720-231739 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0018442:231773-231792 Msa1366060:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0018442:231788-231807 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0018442:231831-231850 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0018442:231859-231878 Msa1366060:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0018442:231875-231894 Msa1366060:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0018442:231922-231941 Msa1366060:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0018442:231989-232008 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0018442:231988-232007 Msa1366060:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0018442:230983-231002 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0018442:230984-231003 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0018442:230985-231004 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0018442:231012-231031 Msa1366060:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0018442:231021-231040 Msa1366060:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0018442:231025-231044 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0018442:231104-231123 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0018442:231151-231170 Msa1366060:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0018442:231278-231297 Msa1366060:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0018442:231318-231337 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0018442:231319-231338 Msa1366060:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0018442:231413-231432 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0018442:231414-231433 Msa1366060:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0018442:231427-231446 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0018442:231428-231447 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0018442:231432-231451 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0018442:231461-231480 Msa1366060:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0018442:231462-231481 Msa1366060:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0018442:231470-231489 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0018442:231516-231535 Msa1366060:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0018442:231527-231546 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0018442:231571-231590 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0018442:231688-231707 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0018442:231709-231728 Msa1366060:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0018442:231836-231855 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0018442:231923-231942 Msa1366060:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0018442:231953-231972 Msa1366060:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0018442:232007-232026 Msa1366060:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0018442:230983-231002 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0018442:230984-231003 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0018442:230985-231004 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0018442:231012-231031 Msa1366060:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0018442:231021-231040 Msa1366060:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0018442:231025-231044 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0018442:231104-231123 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0018442:231151-231170 Msa1366060:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0018442:231278-231297 Msa1366060:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0018442:231318-231337 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0018442:231319-231338 Msa1366060:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0018442:231413-231432 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0018442:231414-231433 Msa1366060:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0018442:231427-231446 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0018442:231428-231447 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0018442:231432-231451 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0018442:231461-231480 Msa1366060:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0018442:231462-231481 Msa1366060:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0018442:231470-231489 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0018442:231516-231535 Msa1366060:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0018442:231527-231546 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0018442:231571-231590 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0018442:231688-231707 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0018442:231709-231728 Msa1366060:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0018442:231836-231855 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0018442:231923-231942 Msa1366060:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0018442:231953-231972 Msa1366060:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0018442:232007-232026 Msa1366060:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0018442:230979-230998 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0018442:231156-231175 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0018442:231423-231442 Msa1366060:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0018442:231471-231490 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0018442:231523-231542 Msa1366060:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0018442:231671-231690 Msa1366060:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0018442:231924-231943 Msa1366060:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0018442:231934-231953 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0018442:231937-231956 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0018442:231937-231956 Msa1366060:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0018442:230979-230998 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0018442:231156-231175 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0018442:231423-231442 Msa1366060:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0018442:231471-231490 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0018442:231523-231542 Msa1366060:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0018442:231671-231690 Msa1366060:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0018442:231924-231943 Msa1366060:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0018442:231934-231953 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0018442:231937-231956 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0018442:231937-231956 Msa1366060:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0018442:231675-231694 Msa1366060:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0018442:231930-231949 Msa1366060:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0018442:231944-231963 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0018442:231995-232014 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0018442:231999-232018 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0018442:231675-231694 Msa1366060:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0018442:231930-231949 Msa1366060:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0018442:231944-231963 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0018442:231995-232014 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0018442:231999-232018 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0018442:231678-231697 Msa1366060:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0018442:231678-231697 Msa1366060:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 230579 232064 230579 ID=Msa1366060;Name=Msa1366060
tig0018442 mRNA 230579 232064 230579 ID=Msa1366060-mRNA-1;Parent=Msa1366060;Name=Msa1366060-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0018442 exon 230579 230635 230579 ID=Msa1366060-mRNA-1:exon:14928;Parent=Msa1366060-mRNA-1
tig0018442 exon 230754 230828 230754 ID=Msa1366060-mRNA-1:exon:14929;Parent=Msa1366060-mRNA-1
tig0018442 exon 230988 231066 230988 ID=Msa1366060-mRNA-1:exon:14930;Parent=Msa1366060-mRNA-1
tig0018442 exon 231188 231398 231188 ID=Msa1366060-mRNA-1:exon:14931;Parent=Msa1366060-mRNA-1
tig0018442 exon 231493 231637 231493 ID=Msa1366060-mRNA-1:exon:14932;Parent=Msa1366060-mRNA-1
tig0018442 exon 231789 232064 231789 ID=Msa1366060-mRNA-1:exon:14933;Parent=Msa1366060-mRNA-1
tig0018442 CDS 230579 230635 230579 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
tig0018442 CDS 230754 230828 230754 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
tig0018442 CDS 230988 231066 230988 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
tig0018442 CDS 231188 231398 231188 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
tig0018442 CDS 231493 231637 231493 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
tig0018442 CDS 231789 232064 231789 ID=Msa1366060-mRNA-1:cds;Parent=Msa1366060-mRNA-1
Gene Sequence

>Msa1366060

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1366060

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*