AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1179160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179160 MtrunA17_Chr8g0343001 73.186 813 167 7 7 817 44 807 0.0 1216
Msa1179160 MtrunA17_Chr8g0342991 72.236 814 173 9 7 817 44 807 0.0 1191
Msa1179160 MtrunA17_Chr8g0342971 65.636 841 226 9 7 817 63 870 0.0 1122
Msa1179160 MtrunA17_Chr8g0344211 65.077 839 232 7 7 817 63 868 0.0 1108
Msa1179160 MtrunA17_Chr8g0342951 66.152 842 218 8 7 817 63 868 0.0 1106
Msa1179160 MtrunA17_Chr8g0343011 64.243 839 234 7 7 817 65 865 0.0 1101
Msa1179160 MtrunA17_Chr8g0342891 63.766 839 243 7 7 817 56 861 0.0 1100
Msa1179160 MtrunA17_Chr8g0342921 62.500 840 252 9 7 817 64 869 0.0 1061
Msa1179160 MtrunA17_Chr8g0342931 65.419 775 215 5 71 817 1 750 0.0 1035
Msa1179160 MtrunA17_Chr8g0342901 62.301 817 256 10 7 817 58 828 0.0 1031
Msa1179160 MtrunA17_Chr2g0329911 58.810 840 283 10 7 817 56 861 0.0 988
Msa1179160 MtrunA17_Chr8g0342881 56.176 842 308 7 4 817 48 856 0.0 967
Msa1179160 MtrunA17_Chr8g0342981 58.612 836 268 14 11 817 37 823 0.0 943
Msa1179160 MtrunA17_Chr5g0406871 56.005 841 304 12 7 817 63 867 0.0 934
Msa1179160 MtrunA17_Chr2g0329901 55.900 839 306 9 7 817 61 863 0.0 921
Msa1179160 MtrunA17_Chr8g0343021 55.397 843 305 11 7 817 61 864 0.0 917
Msa1179160 MtrunA17_Chr8g0343031 54.524 840 317 11 7 817 62 865 0.0 907
Msa1179160 MtrunA17_Chr3g0120071 52.976 840 330 10 7 817 55 858 0.0 893
Msa1179160 MtrunA17_Chr7g0272791 50.701 856 343 12 4 817 49 867 0.0 845
Msa1179160 MtrunA17_Chr1g0205611 49.592 857 355 11 4 817 34 856 0.0 837
Msa1179160 MtrunA17_Chr1g0191921 51.598 845 344 11 6 817 46 858 0.0 835
Msa1179160 MtrunA17_Chr8g0344201 44.133 784 371 13 70 816 173 926 0.0 641
Msa1179160 MtrunA17_Chr8g0344241 75.696 395 96 0 423 817 67 461 0.0 638
Msa1179160 MtrunA17_Chr8g0338451 39.688 834 417 17 12 800 58 850 0.0 595
Msa1179160 MtrunA17_Chr3g0118651 41.751 788 389 16 68 817 148 903 0.0 582
Msa1179160 MtrunA17_Chr8g0377101 41.013 790 394 16 68 817 159 916 0.0 568
Msa1179160 MtrunA17_Chr4g0033171 42.740 730 354 16 123 817 25 725 0.0 566
Msa1179160 MtrunA17_Chr3g0118641 40.863 788 396 15 68 817 147 902 0.0 561
Msa1179160 MtrunA17_Chr4g0047281 38.089 827 445 14 11 816 114 894 0.0 559
Msa1179160 MtrunA17_Chr3g0118621 40.585 786 396 16 71 817 112 865 1.15e-175 528
Msa1179160 MtrunA17_Chr6g0471951 42.380 479 232 6 304 778 42 480 1.36e-127 390
Msa1179160 MtrunA17_Chr7g0218231 60.504 119 46 1 469 586 14 132 5.90e-41 146
Msa1179160 MtrunA17_Chr6g0468081 57.303 89 37 1 499 586 1 89 2.65e-25 100
Msa1179160 MtrunA17_Chr3g0137991 35.200 125 65 3 693 817 1 109 3.08e-15 72.4
Msa1179160 MtrunA17_Chr4g0047271 38.462 91 56 0 726 816 1 91 1.69e-13 67.0
Msa1179160 MtrunA17_Chr2g0277191 51.786 56 27 0 690 745 58 113 4.28e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1179160 AT1G55020.1 50.059 847 353 13 6 817 48 859 0.0 831
Msa1179160 AT3G22400.1 49.593 861 353 13 4 817 60 886 0.0 828
Msa1179160 AT1G17420.1 43.534 781 377 13 71 817 169 919 0.0 636
Msa1179160 AT1G72520.1 43.022 781 382 12 71 817 175 926 0.0 628
Msa1179160 AT3G45140.1 42.273 783 389 20 68 817 144 896 0.0 573
Msa1179160 AT3G45140.2 42.273 783 389 20 68 817 2 754 0.0 572
Msa1179160 AT1G67560.1 39.930 859 425 21 3 817 106 917 0.0 569

Find 184 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGTTGAAGACTTTA+AGG 0.105054 8_1:+12440885 Msa1179160:CDS
CTTCATGCAGCTATTAATTT+TGG 0.141947 8_1:+12445871 Msa1179160:CDS
TCTCCCAATGTTGGTATTAA+AGG 0.150987 8_1:-12440269 None:intergenic
GCATTTATTCTTCTCAAATA+TGG 0.209874 8_1:-12444507 None:intergenic
GGCTTGTATCGTCCAATTCT+TGG 0.211828 8_1:+12443458 Msa1179160:CDS
CTTCTGATGTTTACAAGAAT+TGG 0.215197 8_1:+12445150 Msa1179160:CDS
AATAAATGCAACTGGCTTAA+AGG 0.223947 8_1:+12444521 Msa1179160:CDS
TACGATGTCTACAATGATTT+AGG 0.237255 8_1:+12443416 Msa1179160:CDS
AGGATTGATATCCAACTTTA+TGG 0.249177 8_1:+12444239 Msa1179160:CDS
CATCCTGATGGTGATAGTTT+TGG 0.299418 8_1:+12444621 Msa1179160:CDS
CATTATGAACATGACCATTA+TGG 0.306288 8_1:+12446038 Msa1179160:CDS
GCTTGTATCGTCCAATTCTT+GGG 0.314951 8_1:+12443459 Msa1179160:CDS
GACGATACAAGCCAGGATTT+TGG 0.315020 8_1:-12443448 None:intergenic
ATTCCGAGCTCCAAGCATTC+TGG 0.322998 8_1:+12445731 Msa1179160:CDS
CTTCTGATGGACTAGAGATA+TGG 0.323567 8_1:+12445638 Msa1179160:CDS
CTCCAGTTCCATCTCCTCTT+AGG 0.338800 8_1:-12443364 None:intergenic
CCAACTTACTTCCAAACTTC+TGG 0.344499 8_1:-12446155 None:intergenic
GCTTCAACACCTTGACTTGC+TGG 0.346948 8_1:-12444666 None:intergenic
GGAGACGAAGGTTCTGCTTT+CGG 0.353809 8_1:+12440317 Msa1179160:CDS
CCCCAGCACATGGGAATTCC+AGG 0.369234 8_1:+12440359 Msa1179160:CDS
TCCTGGAATTCCCATGTGCT+GGG 0.371806 8_1:-12440360 None:intergenic
CTTGGGTTGCAACATCTTCA+AGG 0.374201 8_1:-12440436 None:intergenic
TTCTGATGTTTACAAGAATT+GGG 0.377935 8_1:+12445151 Msa1179160:CDS
CATTCATCATAGCAACAAAT+AGG 0.380660 8_1:+12444976 Msa1179160:CDS
CTCCTGGAATTCCCATGTGC+TGG 0.387136 8_1:-12440361 None:intergenic
CAGTTGGCCTACCAGAAGTT+TGG 0.387223 8_1:+12446144 Msa1179160:CDS
ATAGAGTCAACATACTTGTT+TGG 0.392246 8_1:+12445107 Msa1179160:CDS
TGCAAACAGACACAAGTGTT+TGG 0.395541 8_1:-12443551 None:intergenic
GGAAGTAAAAGTTTATGAAT+AGG 0.397518 8_1:-12445017 None:intergenic
CATAATGGTCATGTTCATAA+TGG 0.404031 8_1:-12446037 None:intergenic
CAAGTTCTTTCCAGAATGCT+TGG 0.406750 8_1:-12445741 None:intergenic
AAGGTGTTGAAGCTTCAATT+TGG 0.410740 8_1:+12444676 Msa1179160:CDS
TTGAGAAGAATAAATGCAAC+TGG 0.415813 8_1:+12444513 Msa1179160:CDS
CTTGTTTGGAAGTTATTCAA+TGG 0.417879 8_1:+12445121 Msa1179160:CDS
TGGCCAAGTAATTCATCTCT+TGG 0.419645 8_1:-12443740 None:intergenic
CTTTATCCTTCAAGTGATCC+AGG 0.419657 8_1:+12446264 Msa1179160:CDS
GAAGTAAAAGTTTATGAATA+GGG 0.419737 8_1:-12445016 None:intergenic
CTATTTGTTGCTATGATGAA+TGG 0.420998 8_1:-12444975 None:intergenic
TACTCAGGGGTTCCTATCTC+AGG 0.423400 8_1:-12445952 None:intergenic
TTCTCAACATAAACAGCTCC+TGG 0.423722 8_1:-12440377 None:intergenic
TTCTGATGGACTAGAGATAT+GGG 0.425015 8_1:+12445639 Msa1179160:CDS
TTCTAGATGGAGATACTGTT+GGG 0.425448 8_1:-12446306 None:intergenic
ATCATTAGGTAGTCCTTGTT+CGG 0.425520 8_1:-12445180 None:intergenic
TCTTGTATGTAGTACACTAA+TGG 0.429054 8_1:-12440866 None:intergenic
GGCGTGTAAACATTACTAAC+AGG 0.434440 8_1:-12444645 None:intergenic
AACTGGAGAGCGCAAGGAAT+GGG 0.437269 8_1:+12443379 Msa1179160:CDS
AGAAGATTCATGCCTGAGAT+AGG 0.443784 8_1:+12445940 Msa1179160:CDS
AAACTTGTACCACTCTCATA+TGG 0.449448 8_1:+12445836 Msa1179160:CDS
AAGGATAATCCTTTATCAAA+AGG 0.455079 8_1:-12445612 None:intergenic
GTCAATCCTGGATCACTTGA+AGG 0.455620 8_1:-12446270 None:intergenic
AAAACACTTGGAACCATACA+TGG 0.456618 8_1:+12444286 Msa1179160:CDS
TTTACAAGGGAGATGATTGC+TGG 0.457100 8_1:+12444069 Msa1179160:CDS
TACCCTCGAAGGTGTAGAAC+CGG 0.460074 8_1:+12443500 Msa1179160:CDS
TCAACACCACTAGTGATTCA+AGG 0.460614 8_1:+12443917 Msa1179160:CDS
TCAACAAGCTCCTCATACTC+AGG 0.462736 8_1:-12445967 None:intergenic
GAACCTTTAATACCAACATT+GGG 0.463993 8_1:+12440266 Msa1179160:CDS
GGAACCTTTAATACCAACAT+TGG 0.464483 8_1:+12440265 Msa1179160:CDS
ACTAGTGGTGTTGAAAACTT+TGG 0.466858 8_1:-12443908 None:intergenic
CTTCCGGTTCTACACCTTCG+AGG 0.467507 8_1:-12443503 None:intergenic
GGTCAGCCAGACCAAAATCC+TGG 0.468834 8_1:+12443437 Msa1179160:CDS
TTTCTAGATGGAGATACTGT+TGG 0.468985 8_1:-12446307 None:intergenic
ATTCCAAGAGATGAATTACT+TGG 0.470803 8_1:+12443737 Msa1179160:CDS
GGATGGGGTCAGTGTAGAAC+AGG 0.470907 8_1:+12444307 Msa1179160:CDS
GTTCTACACCTTCGAGGGTA+AGG 0.472384 8_1:-12443497 None:intergenic
AGCCTAAGAGGAGATGGAAC+TGG 0.479796 8_1:+12443362 Msa1179160:CDS
CATACCAATGGCTGACAAGT+TGG 0.480090 8_1:-12444743 None:intergenic
GTGTTAAACCCCAATGTTGT+TGG 0.480337 8_1:+12438468 None:intergenic
GAAGGATAAAGCACAGTGTA+TGG 0.485574 8_1:-12446252 None:intergenic
CAAGCTGATTAGTGCTTCCA+TGG 0.486429 8_1:+12438522 Msa1179160:CDS
AGGCGTTTCCACCGGAGAGC+AGG 0.487270 8_1:+12444219 Msa1179160:intron
CTAGCTAGAGATCTTAATTG+AGG 0.494244 8_1:-12443821 None:intergenic
ATGCCTCTGAAAGTCAATCC+TGG 0.497159 8_1:-12446282 None:intergenic
TACCTAATGATCTAATCAAA+AGG 0.497300 8_1:+12445192 Msa1179160:CDS
ACACTGACCCCATCCATGTA+TGG 0.497527 8_1:-12444299 None:intergenic
ACTCGCAAACAAAGCCTAAG+AGG 0.497731 8_1:+12443350 Msa1179160:CDS
GGTTGACAATACCTCCATAA+TGG 0.501863 8_1:-12446052 None:intergenic
TTCAATTTGGAGCCTTGCCA+AGG 0.503212 8_1:+12444689 Msa1179160:CDS
CACTTGGAACCATACATGGA+TGG 0.503494 8_1:+12444290 Msa1179160:CDS
GATAGGAACCCCTGAGTATG+AGG 0.506154 8_1:+12445957 Msa1179160:CDS
CCAGAAGTTTGGAAGTAAGT+TGG 0.506851 8_1:+12446155 Msa1179160:CDS
ATGTGGAACACTTAGTTCAA+TGG 0.506969 8_1:-12444601 None:intergenic
GGAGAATCGAAGGTAGTCTC+TGG 0.510791 8_1:+12446103 Msa1179160:CDS
AGTGGTGTTGAAAACTTTGG+AGG 0.512195 8_1:-12443905 None:intergenic
CCATTCCGACTCTCAATCCC+TGG 0.512454 8_1:-12443704 None:intergenic
TTTCCAGAATGCTTGGAGCT+CGG 0.513341 8_1:-12445734 None:intergenic
TATTCTGTCTAACAGGCTCT+CGG 0.513868 8_1:+12444441 Msa1179160:intron
GATTATCCTTACGCTTCTGA+TGG 0.516955 8_1:+12445625 Msa1179160:CDS
AGCTGCATCACCAACAACAT+TGG 0.517241 8_1:-12438478 None:intergenic
ACTTGGAACCATACATGGAT+GGG 0.517753 8_1:+12444291 Msa1179160:CDS
ACAGTGTATGGCATCTTCAC+AGG 0.526792 8_1:-12446240 None:intergenic
AATGGAGGTGGTGTTTCACT+TGG 0.531657 8_1:-12440848 None:intergenic
GAACTGGAGAGCGCAAGGAA+TGG 0.534608 8_1:+12443378 Msa1179160:CDS
AGTCACTGGAAAAGGAAAAG+TGG 0.535103 8_1:+12440226 Msa1179160:intron
TTGGGTTGCAACATCTTCAA+GGG 0.535142 8_1:-12440435 None:intergenic
TGGTATTATCACCATAAAGT+TGG 0.536080 8_1:-12444250 None:intergenic
TGGATATCAATCCTGCTCTC+CGG 0.539625 8_1:-12444230 None:intergenic
GTCACTGGAAAAGGAAAAGT+GGG 0.541953 8_1:+12440227 Msa1179160:intron
TGAATGGGATCCCCAGCACA+TGG 0.542410 8_1:+12440349 Msa1179160:CDS
GATCCAGGATTGACTTTCAG+AGG 0.542922 8_1:+12446279 Msa1179160:CDS
CTGGAAAGAACTTGTAGAAG+TGG 0.543538 8_1:+12445750 Msa1179160:CDS
GGACCAAAACTATCACCATC+AGG 0.544353 8_1:-12444624 None:intergenic
ATTTACAACAACGTAAGCCT+TGG 0.544836 8_1:-12444706 None:intergenic
TTCCGGTTCTACACCTTCGA+GGG 0.549374 8_1:-12443502 None:intergenic
TTTGAGGGGAAGGAAAGGAA+AGG 0.549828 8_1:-12443327 None:intergenic
ATCACCAACTTGTCAGCCAT+TGG 0.550212 8_1:+12444739 Msa1179160:CDS
TATGGGGTGCTATTAAGTCA+TGG 0.556682 8_1:+12445656 Msa1179160:CDS
GAAGCTTTGTCTCCCAATGT+TGG 0.559602 8_1:-12440278 None:intergenic
CCAGGGATTGAGAGTCGGAA+TGG 0.560937 8_1:+12443704 Msa1179160:CDS
AAGTGAGAGCACTTCATCAA+AGG 0.560945 8_1:-12443873 None:intergenic
TTGCTTGTTATCTAGAGGAG+TGG 0.563970 8_1:+12445555 Msa1179160:intron
CAACAAGCTCCTCATACTCA+GGG 0.566761 8_1:-12445966 None:intergenic
AGATGGAACTGGAGAGCGCA+AGG 0.567592 8_1:+12443373 Msa1179160:CDS
CCTGGAATTCCCATGTGCTG+GGG 0.568586 8_1:-12440359 None:intergenic
ATGGGGTGCTATTAAGTCAT+GGG 0.569857 8_1:+12445657 Msa1179160:CDS
GAAATTATTACCATCAGCCA+TGG 0.570035 8_1:-12438539 None:intergenic
TTGCAGTCTTCTTGTCACCA+TGG 0.570969 8_1:-12445774 None:intergenic
GTCAACCCATGTTTCTGATG+AGG 0.571558 8_1:+12446068 Msa1179160:CDS
TGTATACCTCATCAGAAACA+TGG 0.579348 8_1:-12446074 None:intergenic
CTTGTATCGTCCAATTCTTG+GGG 0.579393 8_1:+12443460 Msa1179160:CDS
AGAATTGGACGATACAAGCC+AGG 0.579875 8_1:-12443455 None:intergenic
TTGGAACCTCACATCTCTCA+AGG 0.581017 8_1:-12443532 None:intergenic
TGACTGATGAGGAATTTACA+AGG 0.582002 8_1:+12444055 Msa1179160:CDS
AACACAATGAACATAAATGC+CGG 0.582589 8_1:+12445050 Msa1179160:CDS
TTATGATAGAGAGGTGCAGT+TGG 0.584724 8_1:+12446128 Msa1179160:CDS
GAGGTGGTGTTTCACTTGGA+AGG 0.586617 8_1:-12440844 None:intergenic
TTGAGCAAAAGCTCATTGAA+AGG 0.587750 8_1:+12446184 Msa1179160:CDS
GAGTAGAGGATCGCACTGCA+TGG 0.591932 8_1:+12444031 Msa1179160:intron
AATCAAGATATCTCGCGCAC+CGG 0.593820 8_1:-12445069 None:intergenic
TCATCAAAGGAGTTAAACTC+TGG 0.594584 8_1:-12443860 None:intergenic
AAACAAAGCCTAAGAGGAGA+TGG 0.595487 8_1:+12443356 Msa1179160:CDS
TATATATATGATCAGATCCA+GGG 0.595971 8_1:+12443687 Msa1179160:intron
AAACTATCACCATCAGGATG+TGG 0.599290 8_1:-12444618 None:intergenic
CTGATGAGGTATACATCGGA+AGG 0.599510 8_1:+12446082 Msa1179160:CDS
GTGTTAACAGCAAAGTCTGA+AGG 0.601367 8_1:-12443770 None:intergenic
GTTTACACGCCAGCAAGTCA+AGG 0.601425 8_1:+12444657 Msa1179160:CDS
TTGTACCACTCTCATATGGA+TGG 0.602656 8_1:+12445840 Msa1179160:CDS
ATTAGTGCTTCCATGGCTGA+TGG 0.606063 8_1:+12438529 Msa1179160:CDS
TTCATTGTGTTACGATAGTG+TGG 0.606854 8_1:-12445038 None:intergenic
GCTGACAAGTTGGTGATATG+TGG 0.609612 8_1:-12444733 None:intergenic
CAACAACGTAAGCCTTGGCA+AGG 0.611036 8_1:-12444701 None:intergenic
TCTAGTCCATCAGAAGCGTA+AGG 0.612167 8_1:-12445631 None:intergenic
TGGAAAGAACTTGTAGAAGT+GGG 0.612408 8_1:+12445751 Msa1179160:CDS
CAAATAAAGAACGGTCCTTG+TGG 0.612677 8_1:-12444550 None:intergenic
CTTACTTCCAAACTTCTGGT+AGG 0.614464 8_1:-12446151 None:intergenic
CAGATCCAGGGATTGAGAGT+CGG 0.614572 8_1:+12443699 Msa1179160:intron
AACAAATAGGCATCTTAGTG+TGG 0.616014 8_1:+12444989 Msa1179160:CDS
TACATCGGAAGGAGAATCGA+AGG 0.617146 8_1:+12446093 Msa1179160:CDS
ATATCAATCCTGCTCTCCGG+TGG 0.617544 8_1:-12444227 None:intergenic
TTAACAATGTATCCACCGTA+AGG 0.617812 8_1:-12445901 None:intergenic
GATATCTTGATTAACGCAGA+GGG 0.619675 8_1:+12445080 Msa1179160:CDS
TCTCTGGACTTATGATAGAG+AGG 0.619857 8_1:+12446119 Msa1179160:CDS
TTTGGACAATATCCTTACGG+TGG 0.622183 8_1:+12445889 Msa1179160:CDS
GAAGACAATCACAACAATGA+CGG 0.626014 8_1:+12446011 Msa1179160:CDS
GATATACCTTGAATCACTAG+TGG 0.631429 8_1:-12443923 None:intergenic
TCTAATGTAGGCGTTTCCAC+CGG 0.635207 8_1:+12444211 Msa1179160:intron
CTTGGAACCATACATGGATG+GGG 0.635934 8_1:+12444292 Msa1179160:CDS
CAAAGTCTGAAGGTTTCACA+TGG 0.638369 8_1:-12443760 None:intergenic
ATACCACGCCTTACCCTCGA+AGG 0.638575 8_1:+12443489 Msa1179160:CDS
ATCAAAAGGCGAACACCATG+TGG 0.640034 8_1:-12445598 None:intergenic
TCAAAGGAGTTAAACTCTGG+CGG 0.649224 8_1:-12443857 None:intergenic
GTATACCTCATCAGAAACAT+GGG 0.649932 8_1:-12446073 None:intergenic
TGAGTATGAGGAGCTTGTTG+AGG 0.650300 8_1:+12445969 Msa1179160:CDS
GAATGGGATCCCCAGCACAT+GGG 0.652656 8_1:+12440350 Msa1179160:CDS
ACACTTAGTTCAATGGACAA+TGG 0.654958 8_1:-12444594 None:intergenic
GCTTAAAGGCTTATGCCACA+AGG 0.656647 8_1:+12444535 Msa1179160:CDS
GTTTCTGATGAGGTATACAT+CGG 0.656844 8_1:+12446078 Msa1179160:CDS
AGATATCTTGATTAACGCAG+AGG 0.657092 8_1:+12445079 Msa1179160:CDS
CTAAGTGTTCCACATCCTGA+TGG 0.659555 8_1:+12444609 Msa1179160:CDS
AACGATACATCTTCTCCACA+TGG 0.664850 8_1:+12445583 Msa1179160:CDS
TATGAACATGACCATTATGG+AGG 0.665625 8_1:+12446041 Msa1179160:CDS
TGTATGTAGTACACTAATGG+AGG 0.666744 8_1:-12440863 None:intergenic
TTGTATCGTCCAATTCTTGG+GGG 0.670876 8_1:+12443461 Msa1179160:CDS
GACTGATGAGGAATTTACAA+GGG 0.671123 8_1:+12444056 Msa1179160:CDS
ATGTAGTACACTAATGGAGG+TGG 0.671259 8_1:-12440860 None:intergenic
TGAAGCCATCCATATGAGAG+TGG 0.678174 8_1:-12445845 None:intergenic
AAAACTCCTTGAGAGATGTG+AGG 0.678800 8_1:+12443526 Msa1179160:CDS
TCTGATGGACTAGAGATATG+GGG 0.682660 8_1:+12445640 Msa1179160:CDS
GAACTTGTAGAAGTGGGCCA+TGG 0.691948 8_1:+12445757 Msa1179160:CDS
CACTGCATGGATGACTGATG+AGG 0.693276 8_1:+12444044 Msa1179160:CDS
AACAAGCTCCTCATACTCAG+GGG 0.722283 8_1:-12445965 None:intergenic
ACACCTTCGAGGGTAAGGCG+TGG 0.724628 8_1:-12443492 None:intergenic
ACAAGAAGACTGCAACATGG+TGG 0.739274 8_1:+12445782 Msa1179160:CDS
GTGACAAGAAGACTGCAACA+TGG 0.743579 8_1:+12445779 Msa1179160:CDS
AATATGGAAAGATTGCATCG+TGG 0.783955 8_1:-12444491 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAATAAACATCTT+TGG + chr8_1:12438907-12438926 Msa1179160:intron 10.0%
!! GATGATTATTAATTATTATA+TGG + chr8_1:12439349-12439368 Msa1179160:intron 10.0%
!! TTAAAAGAAGATTATAAAAA+TGG + chr8_1:12439577-12439596 Msa1179160:intron 10.0%
!! AAATGACATATAAATAGAAA+TGG - chr8_1:12438667-12438686 None:intergenic 15.0%
!! TCTTAATTTCTTAATAACAT+TGG - chr8_1:12438801-12438820 None:intergenic 15.0%
!!! TCATTTTATTTTCTCATATA+AGG + chr8_1:12438836-12438855 Msa1179160:intron 15.0%
!! CTACAATGATATATATATTT+CGG + chr8_1:12439077-12439096 Msa1179160:intron 15.0%
!!! TATTTTTAAGATAACTTTTC+AGG - chr8_1:12439211-12439230 None:intergenic 15.0%
!!! TTGATATTTTTTTATTTCCA+AGG + chr8_1:12439269-12439288 Msa1179160:intron 15.0%
!! ACCATTATAAGTAAAAAAAT+TGG + chr8_1:12439403-12439422 Msa1179160:intron 15.0%
!!! ACCAATTTTTTTACTTATAA+TGG - chr8_1:12439407-12439426 None:intergenic 15.0%
!! AATGATTCTATATTTATAGA+TGG + chr8_1:12439616-12439635 Msa1179160:intron 15.0%
!! TCAAATTTATGAATTTATGT+TGG - chr8_1:12439793-12439812 None:intergenic 15.0%
!!! ATAATTTGTTTTTGAAAAAG+AGG + chr8_1:12442861-12442880 Msa1179160:intron 15.0%
!!! ATTGTTTTTAAGAGAAAAAA+AGG + chr8_1:12443177-12443196 Msa1179160:intron 15.0%
!!! TTGTTTTTAAGAGAAAAAAA+GGG + chr8_1:12443178-12443197 Msa1179160:intron 15.0%
!!! TTAGTAGTTAAATATTTTGA+AGG + chr8_1:12444136-12444155 Msa1179160:intron 15.0%
!! TTTCATTCTACATTTATAAT+TGG + chr8_1:12444164-12444183 Msa1179160:intron 15.0%
!! AATAAAAACATTTAAGTCTT+TGG - chr8_1:12444360-12444379 None:intergenic 15.0%
!!! AAATAGTTAGCTTATTTATT+TGG - chr8_1:12445368-12445387 None:intergenic 15.0%
!! TTACTATATAAATAAAGGAA+AGG - chr8_1:12445510-12445529 None:intergenic 15.0%
!! CATATAAGGTATACTTATAA+TGG + chr8_1:12438850-12438869 Msa1179160:intron 20.0%
!!! TACAAAATGACTCTAAAATT+TGG + chr8_1:12439158-12439177 Msa1179160:intron 20.0%
!!! TATTCACAAATTTGAAATGT+TGG - chr8_1:12439244-12439263 None:intergenic 20.0%
!!! GAAAATATTGAAACTTCTTT+TGG - chr8_1:12439296-12439315 None:intergenic 20.0%
!!! TTACTTTTTTCATGTCATTT+TGG + chr8_1:12439710-12439729 Msa1179160:intron 20.0%
!! TGAAATTCATATTCATACAT+GGG - chr8_1:12439743-12439762 None:intergenic 20.0%
!! TTGAAATTCATATTCATACA+TGG - chr8_1:12439744-12439763 None:intergenic 20.0%
!! AACATAAGGTCAATTATATA+TGG - chr8_1:12439893-12439912 None:intergenic 20.0%
!! ATATAATTGACCTTATGTTA+AGG + chr8_1:12439894-12439913 Msa1179160:intron 20.0%
!! TGAATTGCAAACAAAAAATA+TGG - chr8_1:12440465-12440484 None:intergenic 20.0%
!!! TATTTTTTGTTTGCAATTCA+TGG + chr8_1:12440465-12440484 Msa1179160:CDS 20.0%
!!! ATTTTTTGTTTGCAATTCAT+GGG + chr8_1:12440466-12440485 Msa1179160:CDS 20.0%
!! AATGCTAAAAATTACTTCTT+CGG + chr8_1:12440577-12440596 Msa1179160:intron 20.0%
!! TTGTTTAAATTAGTAACTAG+AGG + chr8_1:12440708-12440727 Msa1179160:intron 20.0%
!! TGTTTAAATTAGTAACTAGA+GGG + chr8_1:12440709-12440728 Msa1179160:intron 20.0%
!! TACTAATTTAGAAAGTTACA+TGG - chr8_1:12440772-12440791 None:intergenic 20.0%
!! GTCAATTTGAATTATTATGA+GGG - chr8_1:12441105-12441124 None:intergenic 20.0%
!! TGTCAATTTGAATTATTATG+AGG - chr8_1:12441106-12441125 None:intergenic 20.0%
!!! ATAAGTTGTTTTTGAAAAAG+AGG - chr8_1:12442667-12442686 None:intergenic 20.0%
!!! ATAAACTGTTTTTTGAAAAG+AGG - chr8_1:12441524-12441543 None:intergenic 20.0%
!!! ATAAGTTGTTTTTGAAAAAG+AGG - chr8_1:12442667-12442686 None:intergenic 20.0%
!!! GATGTTGTAATAAACTATTT+TGG + chr8_1:12442386-12442405 Msa1179160:intron 20.0%
!!! AGTTTTTTTTTATAAAGACG+TGG + chr8_1:12442550-12442569 Msa1179160:intron 20.0%
!! TCTCTTAAAAACAATACATT+AGG - chr8_1:12443172-12443191 None:intergenic 20.0%
!!! TTTTGCTGTGATATTTATTT+TGG + chr8_1:12443578-12443597 Msa1179160:intron 20.0%
!! TAAATTAAATGAACCACAAA+TGG + chr8_1:12444410-12444429 Msa1179160:intron 20.0%
!!! TAAATTTTATTCTGTCTAAC+AGG + chr8_1:12444434-12444453 Msa1179160:intron 20.0%
!!! ATCATTTTGCAAATAAAGAA+CGG - chr8_1:12444562-12444581 None:intergenic 20.0%
!! AATAATGAAATTCATACCAA+TGG - chr8_1:12444758-12444777 None:intergenic 20.0%
!! ATTATATCTACATGTGTAAT+AGG + chr8_1:12444833-12444852 Msa1179160:intron 20.0%
!! ATTATATCTACATGTGTAAT+AGG + chr8_1:12444833-12444852 Msa1179160:intron 20.0%
!! GAAGTAAAAGTTTATGAATA+GGG - chr8_1:12445019-12445038 None:intergenic 20.0%
!!! AATCAATGTCTTTCTAAAAA+TGG - chr8_1:12445250-12445269 None:intergenic 20.0%
!!! CTAGGTTTTATATTTCTATT+AGG + chr8_1:12445416-12445435 Msa1179160:intron 20.0%
! AAAAACTTTGTTAGAGTGTA+TGG + chr8_1:12438700-12438719 Msa1179160:intron 25.0%
! TACCAATTGATTAAAACTCT+CGG + chr8_1:12438762-12438781 Msa1179160:intron 25.0%
! ACCAATGAATATACCAATAA+AGG + chr8_1:12438991-12439010 Msa1179160:intron 25.0%
! ACCTTTATTGGTATATTCAT+TGG - chr8_1:12438995-12439014 None:intergenic 25.0%
!!! TATACCAATAAAGGTACTTT+TGG + chr8_1:12439000-12439019 Msa1179160:intron 25.0%
! ATATATATATTTCGGACGAA+GGG + chr8_1:12439085-12439104 Msa1179160:intron 25.0%
! ATCAAAATAAAAGCTCAAGT+TGG - chr8_1:12439329-12439348 None:intergenic 25.0%
! ATATGGTTGTCCATAAATAT+AGG + chr8_1:12439366-12439385 Msa1179160:intron 25.0%
! TCAATGCATTCCTATATTTA+TGG - chr8_1:12439379-12439398 None:intergenic 25.0%
! TAATATGAATAGCAACATGT+TGG + chr8_1:12439543-12439562 Msa1179160:intron 25.0%
! GATTCTATATTTATAGATGG+AGG + chr8_1:12439619-12439638 Msa1179160:intron 25.0%
!! TTATTTGAAATTGAACTCAG+GGG - chr8_1:12439678-12439697 None:intergenic 25.0%
!! GTTATTTGAAATTGAACTCA+GGG - chr8_1:12439679-12439698 None:intergenic 25.0%
! TGAATATGAATTTCAAGCTT+CGG + chr8_1:12439748-12439767 Msa1179160:intron 25.0%
! AAGTCCATATGTATAGATTA+AGG + chr8_1:12439820-12439839 Msa1179160:intron 25.0%
! TGATCCTTAATCTATACATA+TGG - chr8_1:12439827-12439846 None:intergenic 25.0%
! TTAGATAGGAAAGATATTAG+AGG - chr8_1:12439859-12439878 None:intergenic 25.0%
! TGGTGAAATGAAATTTAGAT+AGG - chr8_1:12439873-12439892 None:intergenic 25.0%
!!! TTTTAGAAGAGTTTTTGACT+AGG + chr8_1:12439988-12440007 Msa1179160:intron 25.0%
!! TTTGACATTTTTATAGTCAC+TGG + chr8_1:12440212-12440231 Msa1179160:intron 25.0%
!! ATTTTTATAGTCACTGGAAA+AGG + chr8_1:12440218-12440237 Msa1179160:intron 25.0%
! AACAAAAAATATGGCTTCTT+GGG - chr8_1:12440456-12440475 None:intergenic 25.0%
! AAACAAAAAATATGGCTTCT+TGG - chr8_1:12440457-12440476 None:intergenic 25.0%
!! CATTTGTTGCATGAAAAAAA+TGG - chr8_1:12440561-12440580 None:intergenic 25.0%
! ATGCTAAAAATTACTTCTTC+GGG + chr8_1:12440578-12440597 Msa1179160:intron 25.0%
! TCACTTTCATAAGCAAAAAA+CGG + chr8_1:12440601-12440620 Msa1179160:intron 25.0%
!!! TTTTTAAAACTCGCAAACAA+GGG - chr8_1:12440975-12440994 None:intergenic 25.0%
!!! TTTTTTAAAACTCGCAAACA+AGG - chr8_1:12440976-12440995 None:intergenic 25.0%
!!! TTTGCGAGTTTTAAAAAACA+AGG + chr8_1:12440978-12440997 Msa1179160:intron 25.0%
!!! TTGCGAGTTTTAAAAAACAA+GGG + chr8_1:12440979-12440998 Msa1179160:intron 25.0%
!!! AGTTTTAAAAAACAAGGGAA+AGG + chr8_1:12440984-12441003 Msa1179160:intron 25.0%
! GAAAAGAGATCGTAATAATT+AGG - chr8_1:12441142-12441161 None:intergenic 25.0%
!!! ATAAGATGATTTTGAAAACG+AGG - chr8_1:12441237-12441256 None:intergenic 25.0%
!!! ATAAGCTGTTTTTTGAAAAG+AGG - chr8_1:12442487-12442506 None:intergenic 25.0%
!!! ATAAGCTGATTTTGAAAAAG+AGG - chr8_1:12441584-12441603 None:intergenic 25.0%
!! GAGATTATAATAAGCTGTTT+TGG - chr8_1:12441686-12441705 None:intergenic 25.0%
!!! AGTTGATTTGCATAAATAAG+CGG - chr8_1:12441854-12441873 None:intergenic 25.0%
!!! ATAAGCTGATTTTGAAAAAG+AGG - chr8_1:12441584-12441603 None:intergenic 25.0%
!! GAGATTATAATAAGCTGTTT+TGG - chr8_1:12441686-12441705 None:intergenic 25.0%
!!! ATAAGCTGTTTTTTGAAAAG+AGG + chr8_1:12442487-12442506 Msa1179160:intron 25.0%
!!! ATAAGCTGTTTTTTGAAAAG+AGG + chr8_1:12442487-12442506 Msa1179160:intron 25.0%
! TTATCCAAAACAGCTTATTA+CGG - chr8_1:12442827-12442846 None:intergenic 25.0%
! TGGATTAAACATGTCTTTAA+AGG + chr8_1:12443598-12443617 Msa1179160:intron 25.0%
! TATATATATGATCAGATCCA+GGG + chr8_1:12443687-12443706 Msa1179160:intron 25.0%
! AATCAAGTAAAGTAAGTTCA+TGG + chr8_1:12443985-12444004 Msa1179160:intron 25.0%
! AAAATTCTTACTATGAGTAG+AGG + chr8_1:12444017-12444036 Msa1179160:intron 25.0%
!! GAAATTTTTGTGATGACATT+TGG - chr8_1:12444102-12444121 None:intergenic 25.0%
! TGTCATCACAAAAATTTCTT+CGG + chr8_1:12444104-12444123 Msa1179160:CDS 25.0%
! GAATAAAATTTAGCCATTTG+TGG - chr8_1:12444426-12444445 None:intergenic 25.0%
! GCATTTATTCTTCTCAAATA+TGG - chr8_1:12444510-12444529 None:intergenic 25.0%
! AACTACTCTATTTGATCTAT+CGG + chr8_1:12444797-12444816 Msa1179160:intron 25.0%
! GGAAGTAAAAGTTTATGAAT+AGG - chr8_1:12445020-12445039 None:intergenic 25.0%
! TTCTGATGTTTACAAGAATT+GGG + chr8_1:12445151-12445170 Msa1179160:CDS 25.0%
! TACCTAATGATCTAATCAAA+AGG + chr8_1:12445192-12445211 Msa1179160:CDS 25.0%
!!! TACCTTTTGATTAGATCATT+AGG - chr8_1:12445197-12445216 None:intergenic 25.0%
!! CCAAGATGTAATATTTTGTA+AGG - chr8_1:12445221-12445240 None:intergenic 25.0%
! CCTTACAAAATATTACATCT+TGG + chr8_1:12445218-12445237 Msa1179160:intron 25.0%
!! TCTAGATAACTTTTCTAACT+AGG + chr8_1:12445398-12445417 Msa1179160:intron 25.0%
!!! GGTTTTATATTTCTATTAGG+CGG + chr8_1:12445419-12445438 Msa1179160:intron 25.0%
! AAGGATAATCCTTTATCAAA+AGG - chr8_1:12445615-12445634 None:intergenic 25.0%
!! AATTTTGGACAATATCCTTA+CGG + chr8_1:12445886-12445905 Msa1179160:CDS 25.0%
!!! ATGAATCTTCTACTTTTAGT+TGG - chr8_1:12445931-12445950 None:intergenic 25.0%
!! GAGAGTTTTAATCAATTGGT+AGG - chr8_1:12438763-12438782 None:intergenic 30.0%
!! TTCCGAGAGTTTTAATCAAT+TGG - chr8_1:12438767-12438786 None:intergenic 30.0%
!! CATTCCAAAAGTACCTTTAT+TGG - chr8_1:12439007-12439026 None:intergenic 30.0%
ATCATTGTAGTATATGCACA+TGG - chr8_1:12439067-12439086 None:intergenic 30.0%
GATATATATATTTCGGACGA+AGG + chr8_1:12439084-12439103 Msa1179160:intron 30.0%
! CGTTATTTGAAATTGAACTC+AGG - chr8_1:12439680-12439699 None:intergenic 30.0%
GAAACTTACTCCTTAACATA+AGG - chr8_1:12439907-12439926 None:intergenic 30.0%
TGCATAGATAAAAGTGAGTA+TGG - chr8_1:12439963-12439982 None:intergenic 30.0%
AGTGACTTTGATGTAGAATA+TGG + chr8_1:12440067-12440086 Msa1179160:intron 30.0%
TTTGATGTAGAATATGGACA+TGG + chr8_1:12440073-12440092 Msa1179160:intron 30.0%
GAACCTTTAATACCAACATT+GGG + chr8_1:12440266-12440285 Msa1179160:CDS 30.0%
GCTTCTTCAGAAAAAACATT+TGG + chr8_1:12440296-12440315 Msa1179160:CDS 30.0%
! TTTCGGCATTCATTTTGAAT+GGG + chr8_1:12440334-12440353 Msa1179160:CDS 30.0%
! TTTTCTTTAGCAACAAGGTA+AGG + chr8_1:12440522-12440541 Msa1179160:intron 30.0%
!! TACATAATTTTAACCGTTGG+AGG - chr8_1:12440818-12440837 None:intergenic 30.0%
TCCAACGGTTAAAATTATGT+AGG + chr8_1:12440817-12440836 Msa1179160:intron 30.0%
TCTTGTATGTAGTACACTAA+TGG - chr8_1:12440869-12440888 None:intergenic 30.0%
AAGAAGAGTTGAAGACTTTA+AGG + chr8_1:12440885-12440904 Msa1179160:CDS 30.0%
! AAAAAACAAGGGAAAGGTTT+TGG + chr8_1:12440990-12441009 Msa1179160:intron 30.0%
! AAAAACAAGGGAAAGGTTTT+GGG + chr8_1:12440991-12441010 Msa1179160:intron 30.0%
!!! ATTTTAAAGTTCCCCCAAAT+TGG + chr8_1:12441040-12441059 Msa1179160:intron 30.0%
!!! TTTTAAAGTTCCCCCAAATT+GGG + chr8_1:12441041-12441060 Msa1179160:intron 30.0%
! GAGATTGTAATAAGCTGTTT+TGG - chr8_1:12441339-12441358 None:intergenic 30.0%
!! AGGTTGTAATAAGCTGTTTT+GGG - chr8_1:12441504-12441523 None:intergenic 30.0%
!!! ATAAGCTGTTTTTTGAGAAG+AGG - chr8_1:12442033-12442052 None:intergenic 30.0%
!!! AGTTGTTTTTGATAAAGACG+TGG + chr8_1:12442430-12442449 Msa1179160:intron 30.0%
! GAGGTTGTAATAAACTGTTT+TGG + chr8_1:12442506-12442525 Msa1179160:intron 30.0%
! GAGGTTGTAATAAGTTGTTT+TGG + chr8_1:12442626-12442645 Msa1179160:intron 30.0%
! GAGATCGTAATAAGTTGTTT+TGG + chr8_1:12442940-12442959 Msa1179160:intron 30.0%
GTTAAAAAACCAACAAGGAA+AGG - chr8_1:12443239-12443258 None:intergenic 30.0%
!!! GTTTTTTAACTCCCAAACAA+GGG + chr8_1:12443249-12443268 Msa1179160:intron 30.0%
!!! TTTTTTAACTCCCAAACAAG+GGG + chr8_1:12443250-12443269 Msa1179160:intron 30.0%
TACGATGTCTACAATGATTT+AGG + chr8_1:12443416-12443435 Msa1179160:CDS 30.0%
CTATATATATGATCAGATCC+AGG + chr8_1:12443686-12443705 Msa1179160:intron 30.0%
ATTCCAAGAGATGAATTACT+TGG + chr8_1:12443737-12443756 Msa1179160:CDS 30.0%
AGGATTGATATCCAACTTTA+TGG + chr8_1:12444239-12444258 Msa1179160:CDS 30.0%
TGGTATTATCACCATAAAGT+TGG - chr8_1:12444253-12444272 None:intergenic 30.0%
!!! CAAGTGTTTTTTGGTTATTG+TGG - chr8_1:12444276-12444295 None:intergenic 30.0%
CACAATAACCAAAAAACACT+TGG + chr8_1:12444274-12444293 Msa1179160:CDS 30.0%
TTGAGAAGAATAAATGCAAC+TGG + chr8_1:12444513-12444532 Msa1179160:CDS 30.0%
! AATAAATGCAACTGGCTTAA+AGG + chr8_1:12444521-12444540 Msa1179160:CDS 30.0%
! CTATTTGTTGCTATGATGAA+TGG - chr8_1:12444883-12444902 None:intergenic 30.0%
CATTCATCATAGCAACAAAT+AGG + chr8_1:12444881-12444900 Msa1179160:intron 30.0%
! CTATTTGTTGCTATGATGAA+TGG - chr8_1:12444883-12444902 None:intergenic 30.0%
CATTCATCATAGCAACAAAT+AGG + chr8_1:12444881-12444900 Msa1179160:intron 30.0%
AACACAATGAACATAAATGC+CGG + chr8_1:12445050-12445069 Msa1179160:CDS 30.0%
ATAGAGTCAACATACTTGTT+TGG + chr8_1:12445107-12445126 Msa1179160:CDS 30.0%
CTTGTTTGGAAGTTATTCAA+TGG + chr8_1:12445121-12445140 Msa1179160:CDS 30.0%
CTTCTGATGTTTACAAGAAT+TGG + chr8_1:12445150-12445169 Msa1179160:CDS 30.0%
! CTTCATGCAGCTATTAATTT+TGG + chr8_1:12445871-12445890 Msa1179160:CDS 30.0%
!! ATCTTCTACTTTTAGTTGGT+CGG - chr8_1:12445927-12445946 None:intergenic 30.0%
CATAATGGTCATGTTCATAA+TGG - chr8_1:12446040-12446059 None:intergenic 30.0%
CATTATGAACATGACCATTA+TGG + chr8_1:12446038-12446057 Msa1179160:CDS 30.0%
ATGATGAGTCATTGAAAAAC+AGG + chr8_1:12446211-12446230 Msa1179160:CDS 30.0%
AGTCATTGAAAAACAGGAAT+GGG + chr8_1:12446217-12446236 Msa1179160:CDS 30.0%
GAAATTATTACCATCAGCCA+TGG - chr8_1:12438542-12438561 None:intergenic 35.0%
! TTGAAACTTCTTTTGGTCCT+TGG - chr8_1:12439289-12439308 None:intergenic 35.0%
GGAACCTTTAATACCAACAT+TGG + chr8_1:12440265-12440284 Msa1179160:CDS 35.0%
TCTCCCAATGTTGGTATTAA+AGG - chr8_1:12440272-12440291 None:intergenic 35.0%
GAAAAAACATTTGGAGACGA+AGG + chr8_1:12440305-12440324 Msa1179160:CDS 35.0%
! CTTTCGGCATTCATTTTGAA+TGG + chr8_1:12440333-12440352 Msa1179160:CDS 35.0%
!! CTTCAAGGGACATTTTGATA+AGG - chr8_1:12440424-12440443 None:intergenic 35.0%
! ACGCATTTTCTTTAGCAACA+AGG + chr8_1:12440517-12440536 Msa1179160:CDS 35.0%
ATAAGCAAAAAACGGCTCTT+TGG + chr8_1:12440609-12440628 Msa1179160:intron 35.0%
CAAAAACTTGATACCTCCAA+CGG + chr8_1:12440802-12440821 Msa1179160:intron 35.0%
!! GCCTACATAATTTTAACCGT+TGG - chr8_1:12440821-12440840 None:intergenic 35.0%
TGTATGTAGTACACTAATGG+AGG - chr8_1:12440866-12440885 None:intergenic 35.0%
! AAAACAAGGGAAAGGTTTTG+GGG + chr8_1:12440992-12441011 Msa1179160:intron 35.0%
! TTTAAAGTTCCCCCAAATTG+GGG + chr8_1:12441042-12441061 Msa1179160:intron 35.0%
! GAGGTTGTAATAAGCTGTTT+TGG - chr8_1:12441505-12441524 None:intergenic 35.0%
!! ACAAGCTGATTTGGAAAAAG+CGG - chr8_1:12441885-12441904 None:intergenic 35.0%
!! CTGTTTTGAACAAGCTGATT+TGG - chr8_1:12441894-12441913 None:intergenic 35.0%
! GAGGTCGTAATAAGCTATTT+TGG - chr8_1:12442014-12442033 None:intergenic 35.0%
!!! AGCTGTTTTTGAAAAAGACG+TGG - chr8_1:12441461-12441480 None:intergenic 35.0%
AAACCAACAAGGAAAGGAAA+TGG - chr8_1:12443233-12443252 None:intergenic 35.0%
TGGGAGTTAAAAAACCAACA+AGG - chr8_1:12443244-12443263 None:intergenic 35.0%
!!! GGTTTTTTAACTCCCAAACA+AGG + chr8_1:12443248-12443267 Msa1179160:intron 35.0%
CTAGCTAGAGATCTTAATTG+AGG - chr8_1:12443824-12443843 None:intergenic 35.0%
TCATCAAAGGAGTTAAACTC+TGG - chr8_1:12443863-12443882 None:intergenic 35.0%
! ACTAGTGGTGTTGAAAACTT+TGG - chr8_1:12443911-12443930 None:intergenic 35.0%
GATATACCTTGAATCACTAG+TGG - chr8_1:12443926-12443945 None:intergenic 35.0%
TGACTGATGAGGAATTTACA+AGG + chr8_1:12444055-12444074 Msa1179160:CDS 35.0%
GACTGATGAGGAATTTACAA+GGG + chr8_1:12444056-12444075 Msa1179160:CDS 35.0%
! ATTAGATATAGCAAGCACTG+AGG - chr8_1:12444197-12444216 None:intergenic 35.0%
!! GTGCTTGCTATATCTAATGT+AGG + chr8_1:12444199-12444218 Msa1179160:intron 35.0%
!!! GTGTTTTTTGGTTATTGTGG+TGG - chr8_1:12444273-12444292 None:intergenic 35.0%
!!! GTATGGTTCCAAGTGTTTTT+TGG - chr8_1:12444285-12444304 None:intergenic 35.0%
AAAACACTTGGAACCATACA+TGG + chr8_1:12444286-12444305 Msa1179160:CDS 35.0%
AATATGGAAAGATTGCATCG+TGG - chr8_1:12444494-12444513 None:intergenic 35.0%
ACACTTAGTTCAATGGACAA+TGG - chr8_1:12444597-12444616 None:intergenic 35.0%
ATGTGGAACACTTAGTTCAA+TGG - chr8_1:12444604-12444623 None:intergenic 35.0%
!! AAGGTGTTGAAGCTTCAATT+TGG + chr8_1:12444676-12444695 Msa1179160:CDS 35.0%
ATTTACAACAACGTAAGCCT+TGG - chr8_1:12444709-12444728 None:intergenic 35.0%
GCAACAAATAGGCATCTTAT+CGG + chr8_1:12444892-12444911 Msa1179160:intron 35.0%
AACAAATAGGCATCTTAGTG+TGG + chr8_1:12444989-12445008 Msa1179160:CDS 35.0%
TTCATTGTGTTACGATAGTG+TGG - chr8_1:12445041-12445060 None:intergenic 35.0%
AGATATCTTGATTAACGCAG+AGG + chr8_1:12445079-12445098 Msa1179160:CDS 35.0%
GATATCTTGATTAACGCAGA+GGG + chr8_1:12445080-12445099 Msa1179160:CDS 35.0%
ATCATTAGGTAGTCCTTGTT+CGG - chr8_1:12445183-12445202 None:intergenic 35.0%
CATAGTTCAACTCTTACCAA+TGG - chr8_1:12445308-12445327 None:intergenic 35.0%
CATTGGTAAGAGTTGAACTA+TGG + chr8_1:12445306-12445325 Msa1179160:intron 35.0%
!! TTCTGATGGACTAGAGATAT+GGG + chr8_1:12445639-12445658 Msa1179160:CDS 35.0%
TGGAAAGAACTTGTAGAAGT+GGG + chr8_1:12445751-12445770 Msa1179160:CDS 35.0%
AAACTTGTACCACTCTCATA+TGG + chr8_1:12445836-12445855 Msa1179160:CDS 35.0%
TTAACAATGTATCCACCGTA+AGG - chr8_1:12445904-12445923 None:intergenic 35.0%
GAAGACAATCACAACAATGA+CGG + chr8_1:12446011-12446030 Msa1179160:CDS 35.0%
TATGAACATGACCATTATGG+AGG + chr8_1:12446041-12446060 Msa1179160:CDS 35.0%
GTATACCTCATCAGAAACAT+GGG - chr8_1:12446076-12446095 None:intergenic 35.0%
TGTATACCTCATCAGAAACA+TGG - chr8_1:12446077-12446096 None:intergenic 35.0%
GTTTCTGATGAGGTATACAT+CGG + chr8_1:12446078-12446097 Msa1179160:CDS 35.0%
TTGAGCAAAAGCTCATTGAA+AGG + chr8_1:12446184-12446203 Msa1179160:CDS 35.0%
GAGTCATTGAAAAACAGGAA+TGG + chr8_1:12446216-12446235 Msa1179160:CDS 35.0%
AGTCACTGGAAAAGGAAAAG+TGG + chr8_1:12440226-12440245 Msa1179160:intron 40.0%
GTCACTGGAAAAGGAAAAGT+GGG + chr8_1:12440227-12440246 Msa1179160:intron 40.0%
! AGTGGGAAAGCAAACGTTTT+TGG + chr8_1:12440244-12440263 Msa1179160:CDS 40.0%
TTCTCAACATAAACAGCTCC+TGG - chr8_1:12440380-12440399 None:intergenic 40.0%
! TTGGGTTGCAACATCTTCAA+GGG - chr8_1:12440438-12440457 None:intergenic 40.0%
!!! CGTTGGAGGTATCAAGTTTT+TGG - chr8_1:12440804-12440823 None:intergenic 40.0%
ATGTAGTACACTAATGGAGG+TGG - chr8_1:12440863-12440882 None:intergenic 40.0%
!! TTAAGGCTTTGTTTGCGAGT+TGG + chr8_1:12440902-12440921 Msa1179160:intron 40.0%
!! TAAGGCTTTGTTTGCGAGTT+GGG + chr8_1:12440903-12440922 Msa1179160:intron 40.0%
!! TTTGTTTGCGAGTTGGGTTT+TGG + chr8_1:12440909-12440928 Msa1179160:intron 40.0%
!! AAACAAGGGAAAGGTTTTGG+GGG + chr8_1:12440993-12441012 Msa1179160:intron 40.0%
TTAAAGTTCCCCCAAATTGG+GGG + chr8_1:12441043-12441062 Msa1179160:intron 40.0%
GAGGTCGTAATAAGCTATCT+TGG - chr8_1:12441399-12441418 None:intergenic 40.0%
! GAGACCGTAATAAGCTGTTT+TGG + chr8_1:12442820-12442839 Msa1179160:intron 40.0%
CAACAAGGAAAGGAAATGGA+GGG - chr8_1:12443229-12443248 None:intergenic 40.0%
! GGAAAACTTTCCCCTTGTTT+GGG - chr8_1:12443263-12443282 None:intergenic 40.0%
!!! CTTTGTTTGCGAGTTTTGAG+GGG - chr8_1:12443344-12443363 None:intergenic 40.0%
!!! GCTTTGTTTGCGAGTTTTGA+GGG - chr8_1:12443345-12443364 None:intergenic 40.0%
AAACAAAGCCTAAGAGGAGA+TGG + chr8_1:12443356-12443375 Msa1179160:CDS 40.0%
! TCTCTCAAGGAGTTTTCTTC+CGG - chr8_1:12443522-12443541 None:intergenic 40.0%
AAAACTCCTTGAGAGATGTG+AGG + chr8_1:12443526-12443545 Msa1179160:CDS 40.0%
TGCAAACAGACACAAGTGTT+TGG - chr8_1:12443554-12443573 None:intergenic 40.0%
!! TTAAAGGCGCTATACTAGCT+TGG + chr8_1:12443614-12443633 Msa1179160:intron 40.0%
TGGCCAAGTAATTCATCTCT+TGG - chr8_1:12443743-12443762 None:intergenic 40.0%
CAAAGTCTGAAGGTTTCACA+TGG - chr8_1:12443763-12443782 None:intergenic 40.0%
GTGTTAACAGCAAAGTCTGA+AGG - chr8_1:12443773-12443792 None:intergenic 40.0%
TCAAAGGAGTTAAACTCTGG+CGG - chr8_1:12443860-12443879 None:intergenic 40.0%
!! AAGTGAGAGCACTTCATCAA+AGG - chr8_1:12443876-12443895 None:intergenic 40.0%
!! GATGAAGTGCTCTCACTTTT+TGG + chr8_1:12443878-12443897 Msa1179160:CDS 40.0%
! AGTGGTGTTGAAAACTTTGG+AGG - chr8_1:12443908-12443927 None:intergenic 40.0%
TCAACACCACTAGTGATTCA+AGG + chr8_1:12443917-12443936 Msa1179160:CDS 40.0%
TTTACAAGGGAGATGATTGC+TGG + chr8_1:12444069-12444088 Msa1179160:CDS 40.0%
ACTTGGAACCATACATGGAT+GGG + chr8_1:12444291-12444310 Msa1179160:CDS 40.0%
TATTCTGTCTAACAGGCTCT+CGG + chr8_1:12444441-12444460 Msa1179160:intron 40.0%
CAAATAAAGAACGGTCCTTG+TGG - chr8_1:12444553-12444572 None:intergenic 40.0%
AAACTATCACCATCAGGATG+TGG - chr8_1:12444621-12444640 None:intergenic 40.0%
!! CATCCTGATGGTGATAGTTT+TGG + chr8_1:12444621-12444640 Msa1179160:CDS 40.0%
GGCGTGTAAACATTACTAAC+AGG - chr8_1:12444648-12444667 None:intergenic 40.0%
! AATTGGGTTTTCACCGAACA+AGG + chr8_1:12445167-12445186 Msa1179160:CDS 40.0%
CTCATGAGATGTCAATCCAT+TGG + chr8_1:12445289-12445308 Msa1179160:intron 40.0%
GTTGAACTATGGATCCTTAG+AGG + chr8_1:12445317-12445336 Msa1179160:intron 40.0%
TATGGATCCTTAGAGGTAGT+AGG + chr8_1:12445324-12445343 Msa1179160:intron 40.0%
ATGGATCCTTAGAGGTAGTA+GGG + chr8_1:12445325-12445344 Msa1179160:intron 40.0%
TTCATTCCCTACTACCTCTA+AGG - chr8_1:12445334-12445353 None:intergenic 40.0%
!! CTTCCTTGCTTGTTATCTAG+AGG + chr8_1:12445550-12445569 Msa1179160:intron 40.0%
ACTCCTCTAGATAACAAGCA+AGG - chr8_1:12445556-12445575 None:intergenic 40.0%
!! TTGCTTGTTATCTAGAGGAG+TGG + chr8_1:12445555-12445574 Msa1179160:intron 40.0%
AACGATACATCTTCTCCACA+TGG + chr8_1:12445583-12445602 Msa1179160:CDS 40.0%
! TGGTGTTCGCCTTTTGATAA+AGG + chr8_1:12445603-12445622 Msa1179160:CDS 40.0%
GATTATCCTTACGCTTCTGA+TGG + chr8_1:12445625-12445644 Msa1179160:CDS 40.0%
!! CTTCTGATGGACTAGAGATA+TGG + chr8_1:12445638-12445657 Msa1179160:CDS 40.0%
!! TCTGATGGACTAGAGATATG+GGG + chr8_1:12445640-12445659 Msa1179160:CDS 40.0%
!! TATGGGGTGCTATTAAGTCA+TGG + chr8_1:12445656-12445675 Msa1179160:CDS 40.0%
!! ATGGGGTGCTATTAAGTCAT+GGG + chr8_1:12445657-12445676 Msa1179160:CDS 40.0%
CAAGTTCTTTCCAGAATGCT+TGG - chr8_1:12445744-12445763 None:intergenic 40.0%
CTGGAAAGAACTTGTAGAAG+TGG + chr8_1:12445750-12445769 Msa1179160:CDS 40.0%
TTGTACCACTCTCATATGGA+TGG + chr8_1:12445840-12445859 Msa1179160:CDS 40.0%
TTTGGACAATATCCTTACGG+TGG + chr8_1:12445889-12445908 Msa1179160:CDS 40.0%
AGAAGATTCATGCCTGAGAT+AGG + chr8_1:12445940-12445959 Msa1179160:CDS 40.0%
GGTTGACAATACCTCCATAA+TGG - chr8_1:12446055-12446074 None:intergenic 40.0%
TCTCTGGACTTATGATAGAG+AGG + chr8_1:12446119-12446138 Msa1179160:CDS 40.0%
! TTATGATAGAGAGGTGCAGT+TGG + chr8_1:12446128-12446147 Msa1179160:CDS 40.0%
CTTACTTCCAAACTTCTGGT+AGG - chr8_1:12446154-12446173 None:intergenic 40.0%
CCAACTTACTTCCAAACTTC+TGG - chr8_1:12446158-12446177 None:intergenic 40.0%
CCAGAAGTTTGGAAGTAAGT+TGG + chr8_1:12446155-12446174 Msa1179160:CDS 40.0%
GAAGGATAAAGCACAGTGTA+TGG - chr8_1:12446255-12446274 None:intergenic 40.0%
CTTTATCCTTCAAGTGATCC+AGG + chr8_1:12446264-12446283 Msa1179160:CDS 40.0%
CAAGCTGATTAGTGCTTCCA+TGG + chr8_1:12438522-12438541 Msa1179160:CDS 45.0%
ATTAGTGCTTCCATGGCTGA+TGG + chr8_1:12438529-12438548 Msa1179160:CDS 45.0%
! GAAGCTTTGTCTCCCAATGT+TGG - chr8_1:12440281-12440300 None:intergenic 45.0%
! CTTGGGTTGCAACATCTTCA+AGG - chr8_1:12440439-12440458 None:intergenic 45.0%
AATGGAGGTGGTGTTTCACT+TGG - chr8_1:12440851-12440870 None:intergenic 45.0%
!!! TTTGCGAGTTGGGTTTTGGA+GGG + chr8_1:12440913-12440932 Msa1179160:intron 45.0%
!!! AACAAGGGAAAGGTTTTGGG+GGG + chr8_1:12440994-12441013 Msa1179160:intron 45.0%
!!! AAGGTTTTGGGGGGTTTAGA+AGG + chr8_1:12441003-12441022 Msa1179160:intron 45.0%
!!! AGGTTTTGGGGGGTTTAGAA+GGG + chr8_1:12441004-12441023 Msa1179160:intron 45.0%
TAAAGTTCCCCCAAATTGGG+GGG + chr8_1:12441044-12441063 Msa1179160:intron 45.0%
CCAACAAGGAAAGGAAATGG+AGG - chr8_1:12443230-12443249 None:intergenic 45.0%
CCTCCATTTCCTTTCCTTGT+TGG + chr8_1:12443227-12443246 Msa1179160:intron 45.0%
GGGAAAACTTTCCCCTTGTT+TGG - chr8_1:12443264-12443283 None:intergenic 45.0%
AGGAAAGGAAAGGCTTAGGA+GGG - chr8_1:12443320-12443339 None:intergenic 45.0%
AAGGAAAGGAAAGGCTTAGG+AGG - chr8_1:12443321-12443340 None:intergenic 45.0%
TTTGAGGGGAAGGAAAGGAA+AGG - chr8_1:12443330-12443349 None:intergenic 45.0%
!!! GGCTTTGTTTGCGAGTTTTG+AGG - chr8_1:12443346-12443365 None:intergenic 45.0%
ACTCGCAAACAAAGCCTAAG+AGG + chr8_1:12443350-12443369 Msa1179160:CDS 45.0%
!! TACAAGCCAGGATTTTGGTC+TGG - chr8_1:12443446-12443465 None:intergenic 45.0%
! GACGATACAAGCCAGGATTT+TGG - chr8_1:12443451-12443470 None:intergenic 45.0%
AGAATTGGACGATACAAGCC+AGG - chr8_1:12443458-12443477 None:intergenic 45.0%
TTGGAACCTCACATCTCTCA+AGG - chr8_1:12443535-12443554 None:intergenic 45.0%
TCTAATGTAGGCGTTTCCAC+CGG + chr8_1:12444211-12444230 Msa1179160:intron 45.0%
TGGATATCAATCCTGCTCTC+CGG - chr8_1:12444233-12444252 None:intergenic 45.0%
CACTTGGAACCATACATGGA+TGG + chr8_1:12444290-12444309 Msa1179160:CDS 45.0%
CTTGGAACCATACATGGATG+GGG + chr8_1:12444292-12444311 Msa1179160:CDS 45.0%
GCTTAAAGGCTTATGCCACA+AGG + chr8_1:12444535-12444554 Msa1179160:CDS 45.0%
CTAAGTGTTCCACATCCTGA+TGG + chr8_1:12444609-12444628 Msa1179160:CDS 45.0%
GGACCAAAACTATCACCATC+AGG - chr8_1:12444627-12444646 None:intergenic 45.0%
! TTCAATTTGGAGCCTTGCCA+AGG + chr8_1:12444689-12444708 Msa1179160:CDS 45.0%
!! GCTGACAAGTTGGTGATATG+TGG - chr8_1:12444736-12444755 None:intergenic 45.0%
ATCACCAACTTGTCAGCCAT+TGG + chr8_1:12444739-12444758 Msa1179160:CDS 45.0%
CATACCAATGGCTGACAAGT+TGG - chr8_1:12444746-12444765 None:intergenic 45.0%
AATCAAGATATCTCGCGCAC+CGG - chr8_1:12445072-12445091 None:intergenic 45.0%
ATCAAAAGGCGAACACCATG+TGG - chr8_1:12445601-12445620 None:intergenic 45.0%
! TCTAGTCCATCAGAAGCGTA+AGG - chr8_1:12445634-12445653 None:intergenic 45.0%
TTTCCAGAATGCTTGGAGCT+CGG - chr8_1:12445737-12445756 None:intergenic 45.0%
TTGCAGTCTTCTTGTCACCA+TGG - chr8_1:12445777-12445796 None:intergenic 45.0%
GTGACAAGAAGACTGCAACA+TGG + chr8_1:12445779-12445798 Msa1179160:CDS 45.0%
ACAAGAAGACTGCAACATGG+TGG + chr8_1:12445782-12445801 Msa1179160:CDS 45.0%
TGAAGCCATCCATATGAGAG+TGG - chr8_1:12445848-12445867 None:intergenic 45.0%
AACAAGCTCCTCATACTCAG+GGG - chr8_1:12445968-12445987 None:intergenic 45.0%
CAACAAGCTCCTCATACTCA+GGG - chr8_1:12445969-12445988 None:intergenic 45.0%
TCAACAAGCTCCTCATACTC+AGG - chr8_1:12445970-12445989 None:intergenic 45.0%
!! TGAGTATGAGGAGCTTGTTG+AGG + chr8_1:12445969-12445988 Msa1179160:CDS 45.0%
! GTCAACCCATGTTTCTGATG+AGG + chr8_1:12446068-12446087 Msa1179160:CDS 45.0%
CTGATGAGGTATACATCGGA+AGG + chr8_1:12446082-12446101 Msa1179160:CDS 45.0%
TACATCGGAAGGAGAATCGA+AGG + chr8_1:12446093-12446112 Msa1179160:CDS 45.0%
ACAGTGTATGGCATCTTCAC+AGG - chr8_1:12446243-12446262 None:intergenic 45.0%
GTCAATCCTGGATCACTTGA+AGG - chr8_1:12446273-12446292 None:intergenic 45.0%
! GATCCAGGATTGACTTTCAG+AGG + chr8_1:12446279-12446298 Msa1179160:CDS 45.0%
! ATGCCTCTGAAAGTCAATCC+TGG - chr8_1:12446285-12446304 None:intergenic 45.0%
!! ATGTTTATTAAAAAAAAAAA+AGG - chr8_1:12438904-12438923 None:intergenic 5.0%
!! AAAAATTACTATATAAATAA+AGG - chr8_1:12445515-12445534 None:intergenic 5.0%
GGAGACGAAGGTTCTGCTTT+CGG + chr8_1:12440317-12440336 Msa1179160:CDS 50.0%
TCCTGGAATTCCCATGTGCT+GGG - chr8_1:12440363-12440382 None:intergenic 50.0%
GAGGTGGTGTTTCACTTGGA+AGG - chr8_1:12440847-12440866 None:intergenic 50.0%
!! GTTTGCGAGTTGGGTTTTGG+AGG + chr8_1:12440912-12440931 Msa1179160:intron 50.0%
!!! TTGCGAGTTGGGTTTTGGAG+GGG + chr8_1:12440914-12440933 Msa1179160:intron 50.0%
!!! AGTTGGGTTTTGGAGGGGAA+GGG + chr8_1:12440919-12440938 Msa1179160:intron 50.0%
GGAAAGGAAAGGCTTAGGAG+GGG - chr8_1:12443319-12443338 None:intergenic 50.0%
GGGAAGGAAAGGAAAGGCTT+AGG - chr8_1:12443324-12443343 None:intergenic 50.0%
!!! CGAGTTTTGAGGGGAAGGAA+AGG - chr8_1:12443335-12443354 None:intergenic 50.0%
!!! GTTTGCGAGTTTTGAGGGGA+AGG - chr8_1:12443340-12443359 None:intergenic 50.0%
AGCCTAAGAGGAGATGGAAC+TGG + chr8_1:12443362-12443381 Msa1179160:CDS 50.0%
CTCCAGTTCCATCTCCTCTT+AGG - chr8_1:12443367-12443386 None:intergenic 50.0%
! AACTGGAGAGCGCAAGGAAT+GGG + chr8_1:12443379-12443398 Msa1179160:CDS 50.0%
GTTCTACACCTTCGAGGGTA+AGG - chr8_1:12443500-12443519 None:intergenic 50.0%
! TACCCTCGAAGGTGTAGAAC+CGG + chr8_1:12443500-12443519 Msa1179160:CDS 50.0%
TTCCGGTTCTACACCTTCGA+GGG - chr8_1:12443505-12443524 None:intergenic 50.0%
CAGATCCAGGGATTGAGAGT+CGG + chr8_1:12443699-12443718 Msa1179160:intron 50.0%
CACTGCATGGATGACTGATG+AGG + chr8_1:12444044-12444063 Msa1179160:CDS 50.0%
ATATCAATCCTGCTCTCCGG+TGG - chr8_1:12444230-12444249 None:intergenic 50.0%
ACACTGACCCCATCCATGTA+TGG - chr8_1:12444302-12444321 None:intergenic 50.0%
GTTTACACGCCAGCAAGTCA+AGG + chr8_1:12444657-12444676 Msa1179160:CDS 50.0%
!! GCTTCAACACCTTGACTTGC+TGG - chr8_1:12444669-12444688 None:intergenic 50.0%
CAACAACGTAAGCCTTGGCA+AGG - chr8_1:12444704-12444723 None:intergenic 50.0%
ATTCCGAGCTCCAAGCATTC+TGG + chr8_1:12445731-12445750 Msa1179160:CDS 50.0%
GAACTTGTAGAAGTGGGCCA+TGG + chr8_1:12445757-12445776 Msa1179160:CDS 50.0%
TACTCAGGGGTTCCTATCTC+AGG - chr8_1:12445955-12445974 None:intergenic 50.0%
GATAGGAACCCCTGAGTATG+AGG + chr8_1:12445957-12445976 Msa1179160:CDS 50.0%
GGAGAATCGAAGGTAGTCTC+TGG + chr8_1:12446103-12446122 Msa1179160:CDS 50.0%
! CAGTTGGCCTACCAGAAGTT+TGG + chr8_1:12446144-12446163 Msa1179160:CDS 50.0%
TGAATGGGATCCCCAGCACA+TGG + chr8_1:12440349-12440368 Msa1179160:CDS 55.0%
GAATGGGATCCCCAGCACAT+GGG + chr8_1:12440350-12440369 Msa1179160:CDS 55.0%
CCTGGAATTCCCATGTGCTG+GGG - chr8_1:12440362-12440381 None:intergenic 55.0%
CTCCTGGAATTCCCATGTGC+TGG - chr8_1:12440364-12440383 None:intergenic 55.0%
!!! GAGTTGGGTTTTGGAGGGGA+AGG + chr8_1:12440918-12440937 Msa1179160:intron 55.0%
GGAGGGGAAGGAAAGGCTTA+TGG + chr8_1:12440940-12440959 Msa1179160:intron 55.0%
! TCCCCCAAATTGGGGGGTTT+TGG + chr8_1:12441050-12441069 Msa1179160:intron 55.0%
CCCAAAACCCCCCAATTTGG+GGG - chr8_1:12441054-12441073 None:intergenic 55.0%
! CCCCCAAATTGGGGGGTTTT+GGG + chr8_1:12441051-12441070 Msa1179160:intron 55.0%
CCCCAAAACCCCCCAATTTG+GGG - chr8_1:12441055-12441074 None:intergenic 55.0%
! CCCCAAATTGGGGGGTTTTG+GGG + chr8_1:12441052-12441071 Msa1179160:intron 55.0%
CCCCCAAAACCCCCCAATTT+GGG - chr8_1:12441056-12441075 None:intergenic 55.0%
!! CCCAAATTGGGGGGTTTTGG+GGG + chr8_1:12441053-12441072 Msa1179160:intron 55.0%
!!! CCAAATTGGGGGGTTTTGGG+GGG + chr8_1:12441054-12441073 Msa1179160:intron 55.0%
GAAAGGGAGGGAAGGGAGAA+AGG - chr8_1:12443288-12443307 None:intergenic 55.0%
AGGGAAGGAAAGGGAGGGAA+GGG - chr8_1:12443295-12443314 None:intergenic 55.0%
AAGGGAAGGAAAGGGAGGGA+AGG - chr8_1:12443296-12443315 None:intergenic 55.0%
AGGAGGGGAAGGGAAGGAAA+GGG - chr8_1:12443304-12443323 None:intergenic 55.0%
TAGGAGGGGAAGGGAAGGAA+AGG - chr8_1:12443305-12443324 None:intergenic 55.0%
GGAAAGGCTTAGGAGGGGAA+GGG - chr8_1:12443314-12443333 None:intergenic 55.0%
AGGAAAGGCTTAGGAGGGGA+AGG - chr8_1:12443315-12443334 None:intergenic 55.0%
! AGATGGAACTGGAGAGCGCA+AGG + chr8_1:12443373-12443392 Msa1179160:CDS 55.0%
! GAACTGGAGAGCGCAAGGAA+TGG + chr8_1:12443378-12443397 Msa1179160:CDS 55.0%
GGTCAGCCAGACCAAAATCC+TGG + chr8_1:12443437-12443456 Msa1179160:CDS 55.0%
ATACCACGCCTTACCCTCGA+AGG + chr8_1:12443489-12443508 Msa1179160:CDS 55.0%
CTTCCGGTTCTACACCTTCG+AGG - chr8_1:12443506-12443525 None:intergenic 55.0%
CCATTCCGACTCTCAATCCC+TGG - chr8_1:12443707-12443726 None:intergenic 55.0%
CCAGGGATTGAGAGTCGGAA+TGG + chr8_1:12443704-12443723 Msa1179160:CDS 55.0%
GAGTAGAGGATCGCACTGCA+TGG + chr8_1:12444031-12444050 Msa1179160:intron 55.0%
GGATGGGGTCAGTGTAGAAC+AGG + chr8_1:12444307-12444326 Msa1179160:CDS 55.0%
CCCCAGCACATGGGAATTCC+AGG + chr8_1:12440359-12440378 Msa1179160:CDS 60.0%
!!! TGGGTTTTGGAGGGGAAGGG+AGG + chr8_1:12440922-12440941 Msa1179160:intron 60.0%
!!! GGGTTTTGGAGGGGAAGGGA+GGG + chr8_1:12440923-12440942 Msa1179160:intron 60.0%
!!! GGTTTTGGAGGGGAAGGGAG+GGG + chr8_1:12440924-12440943 Msa1179160:intron 60.0%
CCCCCCAAAACCCCCCAATT+TGG - chr8_1:12441057-12441076 None:intergenic 60.0%
GGGAGGGAAGGGAGAAAGGA+GGG - chr8_1:12443284-12443303 None:intergenic 60.0%
AGGGAGGGAAGGGAGAAAGG+AGG - chr8_1:12443285-12443304 None:intergenic 60.0%
GGGGAAGGGAAGGAAAGGGA+GGG - chr8_1:12443300-12443319 None:intergenic 60.0%
AGGGGAAGGGAAGGAAAGGG+AGG - chr8_1:12443301-12443320 None:intergenic 60.0%
AGGCTTAGGAGGGGAAGGGA+AGG - chr8_1:12443310-12443329 None:intergenic 60.0%
ACACCTTCGAGGGTAAGGCG+TGG - chr8_1:12443495-12443514 None:intergenic 60.0%
TTGGAGGGGAAGGGAGGGGA+AGG + chr8_1:12440928-12440947 Msa1179160:intron 65.0%
GGGGAAGGGAGGGGAAGGAA+AGG + chr8_1:12440933-12440952 Msa1179160:intron 65.0%
AGGCGTTTCCACCGGAGAGC+AGG + chr8_1:12444219-12444238 Msa1179160:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 12438481 12446326 12438481 ID=Msa1179160;Name=Msa1179160
chr8_1 mRNA 12438481 12446326 12438481 ID=Msa1179160-mRNA-1;Parent=Msa1179160;Name=Msa1179160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.11|0|0.9|1|1|10|0|817
chr8_1 exon 12438481 12438550 12438481 ID=Msa1179160-mRNA-1:exon:4443;Parent=Msa1179160-mRNA-1
chr8_1 exon 12440228 12440538 12440228 ID=Msa1179160-mRNA-1:exon:4444;Parent=Msa1179160-mRNA-1
chr8_1 exon 12440839 12440911 12440839 ID=Msa1179160-mRNA-1:exon:4445;Parent=Msa1179160-mRNA-1
chr8_1 exon 12443327 12443566 12443327 ID=Msa1179160-mRNA-1:exon:4446;Parent=Msa1179160-mRNA-1
chr8_1 exon 12443702 12443938 12443702 ID=Msa1179160-mRNA-1:exon:4447;Parent=Msa1179160-mRNA-1
chr8_1 exon 12444037 12444125 12444037 ID=Msa1179160-mRNA-1:exon:4448;Parent=Msa1179160-mRNA-1
chr8_1 exon 12444221 12444328 12444221 ID=Msa1179160-mRNA-1:exon:4449;Parent=Msa1179160-mRNA-1
chr8_1 exon 12444456 12444760 12444456 ID=Msa1179160-mRNA-1:exon:4450;Parent=Msa1179160-mRNA-1
chr8_1 exon 12444950 12445213 12444950 ID=Msa1179160-mRNA-1:exon:4451;Parent=Msa1179160-mRNA-1
chr8_1 exon 12445570 12446326 12445570 ID=Msa1179160-mRNA-1:exon:4452;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12438481 12438550 12438481 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12440228 12440538 12440228 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12440839 12440911 12440839 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12443327 12443566 12443327 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12443702 12443938 12443702 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12444037 12444125 12444037 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12444221 12444328 12444221 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12444456 12444760 12444456 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12444950 12445213 12444950 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
chr8_1 CDS 12445570 12446326 12445570 ID=Msa1179160-mRNA-1:cds;Parent=Msa1179160-mRNA-1
Gene Sequence

>Msa1179160

ATGTTGTTGGTGATGCAGCTGTTAGACAATACTGTGTCATTCAAGCTGATTAGTGCTTCCATGGCTGATGTCACTGGAAAAGGAAAAGTGGGAAAGCAAACGTTTTTGGAACCTTTAATACCAACATTGGGAGACAAAGCTTCTTCAGAAAAAACATTTGGAGACGAAGGTTCTGCTTTCGGCATTCATTTTGAATGGGATCCCCAGCACATGGGAATTCCAGGAGCTGTTTATGTTGAGAATTTTATGCAAGATGAATTCTTCCTTATCAAAATGTCCCTTGAAGATGTTGCAACCCAAGAAGCCATATTTTTTGTTTGCAATTCATGGGTTTACAATGCTGAAAAGTACAATACTGAACGCATTTTCTTTAGCAACAAGGCATACCTTCCAAGTGAAACACCACCTCCATTAGTGTACTACATACAAGAAGAGTTGAAGACTTTAAGGCTTTCCTTTCCTTTCCTTCCCCTCAAAACTCGCAAACAAAGCCTAAGAGGAGATGGAACTGGAGAGCGCAAGGAATGGGAAAGAATATATGATTACGATGTCTACAATGATTTAGGTCAGCCAGACCAAAATCCTGGCTTGTATCGTCCAATTCTTGGGGGATCAAATACCACGCCTTACCCTCGAAGGTGTAGAACCGGAAGAAAACTCCTTGAGAGATGTGAGGTTCCAAACACTTGTGTCTATCCAGGGATTGAGAGTCGGAATGGATATTTTTACATTCCAAGAGATGAATTACTTGGCCATGTGAAACCTTCAGACTTTGCTGTTAACACACTCAAATCAGCATCTGAATATGACACACCTCAATTAAGATCTCTAGCTAGAATACAAAACGATCCGCCAGAGTTTAACTCCTTTGATGAAGTGCTCTCACTTTTTGGCGAACCTCCAAAGTTTTCAACACCACTAGTGATTCAAGAGGATCGCACTGCATGGATGACTGATGAGGAATTTACAAGGGAGATGATTGCTGGTGTGCATCCAAATGTCATCACAAAAATTTCTTCGGCGTTTCCACCGGAGAGCAGGATTGATATCCAACTTTATGGTGATAATACCACCACAATAACCAAAAAACACTTGGAACCATACATGGATGGGGTCAGTGTAGAACAGGCTCTCGGAGACAATAGATTATACATACTTGATCACCACGATGCAATCTTTCCATATTTGAGAAGAATAAATGCAACTGGCTTAAAGGCTTATGCCACAAGGACCGTTCTTTATTTGCAAAATGATGAAACTTTGAAGCCATTGTCCATTGAACTAAGTGTTCCACATCCTGATGGTGATAGTTTTGGTCCTGTTAGTAATGTTTACACGCCAGCAAGTCAAGGTGTTGAAGCTTCAATTTGGAGCCTTGCCAAGGCTTACGTTGTTGTAAATGACGCCACATATCACCAACTTGTCAGCCATTGGTTAAACACTCATGCTTCTGTTGAGCCATTCATCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTTTTACTTCCACACTATCGTAACACAATGAACATAAATGCCGGTGCGCGAGATATCTTGATTAACGCAGAGGGTATCATAGAGTCAACATACTTGTTTGGAAGTTATTCAATGGAATTGTCTTCTGATGTTTACAAGAATTGGGTTTTCACCGAACAAGGACTACCTAATGATCTAATCAAAAGAGGAGTGGCTGTTAACGATACATCTTCTCCACATGGTGTTCGCCTTTTGATAAAGGATTATCCTTACGCTTCTGATGGACTAGAGATATGGGGTGCTATTAAGTCATGGGTTGAAGAATATGTAAATTTCTATTACAAGTTAGATGCAGCTGTTGCAGATGATTCCGAGCTCCAAGCATTCTGGAAAGAACTTGTAGAAGTGGGCCATGGTGACAAGAAGACTGCAACATGGTGGTTTAAGATGCAAAATCGTGCAGAGTTGATTGAAACTTGTACCACTCTCATATGGATGGCTTCAGCACTTCATGCAGCTATTAATTTTGGACAATATCCTTACGGTGGATACATTGTTAACCGACCAACTAAAAGTAGAAGATTCATGCCTGAGATAGGAACCCCTGAGTATGAGGAGCTTGTTGAGGACTACGAGAAAGCGTATTTGAAGACAATCACAACAATGACGGATACCATTATGAACATGACCATTATGGAGGTATTGTCAACCCATGTTTCTGATGAGGTATACATCGGAAGGAGAATCGAAGGTAGTCTCTGGACTTATGATAGAGAGGTGCAGTTGGCCTACCAGAAGTTTGGAAGTAAGTTGGCTGAAATTGAGCAAAAGCTCATTGAAAGGAACAATGATGAGTCATTGAAAAACAGGAATGGGCCTGTGAAGATGCCATACACTGTGCTTTATCCTTCAAGTGATCCAGGATTGACTTTCAGAGGCATTCCCAACAGTATCTCCATCTAG
Protein sequence

>Msa1179160

MLLVMQLLDNTVSFKLISASMADVTGKGKVGKQTFLEPLIPTLGDKASSEKTFGDEGSAFGIHFEWDPQHMGIPGAVYVENFMQDEFFLIKMSLEDVATQEAIFFVCNSWVYNAEKYNTERIFFSNKAYLPSETPPPLVYYIQEELKTLRLSFPFLPLKTRKQSLRGDGTGERKEWERIYDYDVYNDLGQPDQNPGLYRPILGGSNTTPYPRRCRTGRKLLERCEVPNTCVYPGIESRNGYFYIPRDELLGHVKPSDFAVNTLKSASEYDTPQLRSLARIQNDPPEFNSFDEVLSLFGEPPKFSTPLVIQEDRTAWMTDEEFTREMIAGVHPNVITKISSAFPPESRIDIQLYGDNTTTITKKHLEPYMDGVSVEQALGDNRLYILDHHDAIFPYLRRINATGLKAYATRTVLYLQNDETLKPLSIELSVPHPDGDSFGPVSNVYTPASQGVEASIWSLAKAYVVVNDATYHQLVSHWLNTHASVEPFIIATNRHLSVVHPIHKLLLPHYRNTMNINAGARDILINAEGIIESTYLFGSYSMELSSDVYKNWVFTEQGLPNDLIKRGVAVNDTSSPHGVRLLIKDYPYASDGLEIWGAIKSWVEEYVNFYYKLDAAVADDSELQAFWKELVEVGHGDKKTATWWFKMQNRAELIETCTTLIWMASALHAAINFGQYPYGGYIVNRPTKSRRFMPEIGTPEYEELVEDYEKAYLKTITTMTDTIMNMTIMEVLSTHVSDEVYIGRRIEGSLWTYDREVQLAYQKFGSKLAEIEQKLIERNNDESLKNRNGPVKMPYTVLYPSSDPGLTFRGIPNSISI*