AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354960 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354960 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354960 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354960 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354960 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-655276 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+656217 Msa1354960:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+655922 Msa1354960:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-655289 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+655676 Msa1354960:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-656252 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-656516 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+655871 Msa1354960:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+655655 Msa1354960:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-656188 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+656016 Msa1354960:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+656641 Msa1354960:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+656601 Msa1354960:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-656684 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-656048 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-655921 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+656015 Msa1354960:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+655923 Msa1354960:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+656594 Msa1354960:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+655667 Msa1354960:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+655708 Msa1354960:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-656650 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+656164 Msa1354960:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-656008 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+656647 Msa1354960:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-655953 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+656586 Msa1354960:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-656660 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+656652 Msa1354960:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+656587 Msa1354960:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+655446 Msa1354960:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+655229 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-655954 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+656617 Msa1354960:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-655884 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-656268 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-655895 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-656605 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+656165 Msa1354960:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+656273 Msa1354960:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-656017 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+656687 Msa1354960:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-655267 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-655686 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+656180 Msa1354960:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-656643 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+655707 Msa1354960:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+656556 Msa1354960:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+655691 Msa1354960:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-656515 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-656628 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-656552 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+655471 Msa1354960:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+656648 Msa1354960:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-656598 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-656492 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-655979 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+655677 Msa1354960:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-656251 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-656165 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-656553 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-656504 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-655475 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+656519 Msa1354960:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-656620 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+656572 Msa1354960:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-656204 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-656203 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+656017 Msa1354960:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+656280 Msa1354960:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-655920 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-656497 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-655994 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+655942 Msa1354960:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-656018 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-656683 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+656187 Msa1354960:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-655959 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-656595 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+656518 Msa1354960:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+655685 Msa1354960:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-656656 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-655663 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-656572 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+655961 Msa1354960:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-656529 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+656263 Msa1354960:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-656213 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-656164 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-656195 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+655678 Msa1354960:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-656580 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+656523 Msa1354960:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+655250 Msa1354960:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-656232 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-655878 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-656013 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-655879 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-655933 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-655662 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-656682 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-655259 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-656244 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+655709 Msa1354960:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-656627 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-656226 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+655234 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-655958 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-656464 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-656280 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+656539 Msa1354960:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+655865 Msa1354960:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-656172 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-656223 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-656681 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-656279 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-655860 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+655983 Msa1354960:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+655670 Msa1354960:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-656250 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+656588 Msa1354960:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+655964 Msa1354960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:655446-655465 Msa1354960:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:655446-655465 Msa1354960:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:655570-655589 Msa1354960:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:655611-655630 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:656059-656078 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:655570-655589 Msa1354960:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:655611-655630 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:656059-656078 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:655320-655339 Msa1354960:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:655575-655594 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:656051-656070 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:656060-656079 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:656686-656705 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:655320-655339 Msa1354960:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:655575-655594 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:656051-656070 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:656060-656079 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:656686-656705 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:655279-655298 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:655284-655303 Msa1354960:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:655292-655311 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:655384-655403 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:655384-655403 Msa1354960:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:655471-655490 Msa1354960:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:655478-655497 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:655487-655506 Msa1354960:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:655501-655520 Msa1354960:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:655565-655584 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:655605-655624 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:655708-655727 Msa1354960:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:655956-655975 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:656065-656084 Msa1354960:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:656253-656272 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:656254-656273 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:656255-656274 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:656467-656486 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:656556-656575 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:656556-656575 Msa1354960:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:656572-656591 Msa1354960:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:656685-656704 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:656687-656706 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:656687-656706 Msa1354960:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:655279-655298 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:655284-655303 Msa1354960:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:655292-655311 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:655384-655403 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:655384-655403 Msa1354960:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:655471-655490 Msa1354960:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:655478-655497 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:655487-655506 Msa1354960:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:655501-655520 Msa1354960:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:655565-655584 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:655605-655624 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:655708-655727 Msa1354960:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:655956-655975 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:656065-656084 Msa1354960:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:656253-656272 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:656254-656273 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:656255-656274 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:656467-656486 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:656556-656575 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:656556-656575 Msa1354960:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:656572-656591 Msa1354960:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:656685-656704 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:656687-656706 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:656687-656706 Msa1354960:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:655270-655289 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:655337-655356 Msa1354960:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:655342-655361 Msa1354960:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:655347-655366 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:655385-655404 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:655383-655402 Msa1354960:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:655389-655408 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:655388-655407 Msa1354960:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:655389-655408 Msa1354960:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:655510-655529 Msa1354960:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:655539-655558 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:655707-655726 Msa1354960:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:655709-655728 Msa1354960:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:655790-655809 Msa1354960:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:655923-655942 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:655923-655942 Msa1354960:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:655957-655976 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:655961-655980 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:655962-655981 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:655961-655980 Msa1354960:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:656306-656325 Msa1354960:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:656416-656435 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:656417-656436 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:656416-656435 Msa1354960:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:656417-656436 Msa1354960:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:656431-656450 Msa1354960:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:656555-656574 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:656575-656594 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:656630-656649 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:656641-656660 Msa1354960:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:656684-656703 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:656703-656722 Msa1354960:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:655270-655289 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:655337-655356 Msa1354960:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:655342-655361 Msa1354960:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:655347-655366 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:655385-655404 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:655383-655402 Msa1354960:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:655389-655408 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:655388-655407 Msa1354960:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:655389-655408 Msa1354960:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:655510-655529 Msa1354960:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:655539-655558 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:655707-655726 Msa1354960:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:655709-655728 Msa1354960:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:655790-655809 Msa1354960:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:655923-655942 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:655923-655942 Msa1354960:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:655957-655976 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:655961-655980 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:655962-655981 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:655961-655980 Msa1354960:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:656306-656325 Msa1354960:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:656416-656435 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:656417-656436 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:656416-656435 Msa1354960:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:656417-656436 Msa1354960:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:656431-656450 Msa1354960:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:656555-656574 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:656575-656594 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:656630-656649 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:656641-656660 Msa1354960:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:656684-656703 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:656703-656722 Msa1354960:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:655352-655371 Msa1354960:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:655393-655412 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:655390-655409 Msa1354960:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:655391-655410 Msa1354960:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:655655-655674 Msa1354960:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:655665-655684 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:655666-655685 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:655797-655816 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:655837-655856 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:655887-655906 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:655898-655917 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:655924-655943 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:655922-655941 Msa1354960:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:655964-655983 Msa1354960:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:655997-656016 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:656229-656248 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:656247-656266 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:656282-656301 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:656323-656342 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:656320-656339 Msa1354960:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:656368-656387 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:656396-656415 Msa1354960:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:656397-656416 Msa1354960:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:656404-656423 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:656507-656526 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:656518-656537 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:656518-656537 Msa1354960:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:656583-656602 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:656631-656650 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:656646-656665 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:656648-656667 Msa1354960:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:655352-655371 Msa1354960:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:655393-655412 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:655390-655409 Msa1354960:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:655391-655410 Msa1354960:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:655655-655674 Msa1354960:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:655665-655684 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:655666-655685 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:655797-655816 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:655837-655856 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:655887-655906 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:655898-655917 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:655924-655943 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:655922-655941 Msa1354960:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:655964-655983 Msa1354960:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:655997-656016 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:656229-656248 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:656247-656266 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:656282-656301 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:656323-656342 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:656320-656339 Msa1354960:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:656368-656387 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:656396-656415 Msa1354960:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:656397-656416 Msa1354960:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:656404-656423 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:656507-656526 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:656518-656537 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:656518-656537 Msa1354960:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:656583-656602 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:656631-656650 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:656646-656665 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:656648-656667 Msa1354960:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:655262-655281 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:655394-655413 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:655398-655417 Msa1354960:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:655523-655542 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:655630-655649 Msa1354960:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:655631-655650 Msa1354960:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:655667-655686 Msa1354960:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:655670-655689 Msa1354960:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:655713-655732 Msa1354960:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:655773-655792 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:655786-655805 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:655787-655806 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:655801-655820 Msa1354960:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:655831-655850 Msa1354960:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:655836-655855 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:655836-655855 Msa1354960:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:655842-655861 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:655863-655882 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:655865-655884 Msa1354960:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:655871-655890 Msa1354960:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:655881-655900 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:655882-655901 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:655936-655955 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:656011-656030 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:656016-656035 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:656015-656034 Msa1354960:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:656016-656035 Msa1354960:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:656021-656040 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:656106-656125 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:656167-656186 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:656165-656184 Msa1354960:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:656175-656194 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:656198-656217 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:656206-656225 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:656207-656226 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:656216-656235 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:656217-656236 Msa1354960:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:656218-656237 Msa1354960:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:656263-656282 Msa1354960:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:656271-656290 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:656273-656292 Msa1354960:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:656283-656302 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:656280-656299 Msa1354960:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:656357-656376 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:656381-656400 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:656405-656424 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:656411-656430 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:656519-656538 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:656519-656538 Msa1354960:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:656532-656551 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:656623-656642 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:656647-656666 Msa1354960:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:655262-655281 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:655394-655413 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:655398-655417 Msa1354960:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:655523-655542 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:655630-655649 Msa1354960:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:655631-655650 Msa1354960:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:655667-655686 Msa1354960:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:655670-655689 Msa1354960:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:655713-655732 Msa1354960:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:655773-655792 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:655786-655805 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:655787-655806 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:655801-655820 Msa1354960:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:655831-655850 Msa1354960:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:655836-655855 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:655836-655855 Msa1354960:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:655842-655861 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:655863-655882 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:655865-655884 Msa1354960:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:655871-655890 Msa1354960:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:655881-655900 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:655882-655901 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:655936-655955 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:656011-656030 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:656016-656035 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:656015-656034 Msa1354960:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:656016-656035 Msa1354960:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:656021-656040 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:656106-656125 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:656167-656186 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:656165-656184 Msa1354960:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:656175-656194 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:656198-656217 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:656206-656225 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:656207-656226 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:656216-656235 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:656217-656236 Msa1354960:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:656218-656237 Msa1354960:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:656263-656282 Msa1354960:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:656271-656290 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:656273-656292 Msa1354960:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:656283-656302 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:656280-656299 Msa1354960:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:656357-656376 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:656381-656400 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:656405-656424 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:656411-656430 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:656519-656538 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:656519-656538 Msa1354960:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:656532-656551 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:656623-656642 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:656647-656666 Msa1354960:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:655250-655269 Msa1354960:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:655371-655390 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:655378-655397 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:655404-655423 Msa1354960:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:655632-655651 Msa1354960:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:655677-655696 Msa1354960:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:655678-655697 Msa1354960:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:655691-655710 Msa1354960:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:655712-655731 Msa1354960:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:655757-655776 Msa1354960:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:655778-655797 Msa1354960:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:655832-655851 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:655830-655849 Msa1354960:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:656020-656039 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:656017-656036 Msa1354960:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:656097-656116 Msa1354960:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:656123-656142 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:656121-656140 Msa1354960:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:656122-656141 Msa1354960:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:656164-656183 Msa1354960:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:656168-656187 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:656221-656240 Msa1354960:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:656226-656245 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:656353-656372 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:656354-656373 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:656355-656374 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:656356-656375 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:656377-656396 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:656384-656403 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:656437-656456 Msa1354960:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:656452-656471 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:656495-656514 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:656523-656542 Msa1354960:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:656539-656558 Msa1354960:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:656586-656605 Msa1354960:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:656653-656672 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:656652-656671 Msa1354960:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:655250-655269 Msa1354960:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:655371-655390 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:655378-655397 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:655404-655423 Msa1354960:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:655632-655651 Msa1354960:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:655677-655696 Msa1354960:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:655678-655697 Msa1354960:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:655691-655710 Msa1354960:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:655712-655731 Msa1354960:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:655757-655776 Msa1354960:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:655778-655797 Msa1354960:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:655832-655851 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:655830-655849 Msa1354960:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:656020-656039 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:656017-656036 Msa1354960:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:656097-656116 Msa1354960:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:656123-656142 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:656121-656140 Msa1354960:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:656122-656141 Msa1354960:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:656164-656183 Msa1354960:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:656168-656187 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:656221-656240 Msa1354960:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:656226-656245 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:656353-656372 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:656354-656373 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:656355-656374 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:656356-656375 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:656377-656396 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:656384-656403 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:656437-656456 Msa1354960:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:656452-656471 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:656495-656514 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:656523-656542 Msa1354960:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:656539-656558 Msa1354960:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:656586-656605 Msa1354960:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:656653-656672 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:656652-656671 Msa1354960:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:655647-655666 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:655648-655667 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:655649-655668 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:655676-655695 Msa1354960:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:655685-655704 Msa1354960:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:655689-655708 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:655768-655787 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:655815-655834 Msa1354960:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:655942-655961 Msa1354960:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:655982-656001 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:655983-656002 Msa1354960:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:656077-656096 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:656078-656097 Msa1354960:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:656091-656110 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:656092-656111 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:656096-656115 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:656125-656144 Msa1354960:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:656126-656145 Msa1354960:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:656134-656153 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:656180-656199 Msa1354960:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:656191-656210 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:656235-656254 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:656352-656371 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:656373-656392 Msa1354960:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:656500-656519 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:656587-656606 Msa1354960:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:656617-656636 Msa1354960:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:656671-656690 Msa1354960:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:655647-655666 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:655648-655667 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:655649-655668 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:655676-655695 Msa1354960:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:655685-655704 Msa1354960:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:655689-655708 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:655768-655787 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:655815-655834 Msa1354960:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:655942-655961 Msa1354960:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:655982-656001 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:655983-656002 Msa1354960:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:656077-656096 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:656078-656097 Msa1354960:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:656091-656110 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:656092-656111 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:656096-656115 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:656125-656144 Msa1354960:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:656126-656145 Msa1354960:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:656134-656153 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:656180-656199 Msa1354960:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:656191-656210 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:656235-656254 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:656352-656371 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:656373-656392 Msa1354960:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:656500-656519 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:656587-656606 Msa1354960:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:656617-656636 Msa1354960:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:656671-656690 Msa1354960:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:655643-655662 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:655820-655839 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:656087-656106 Msa1354960:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:656135-656154 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:656187-656206 Msa1354960:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:656335-656354 Msa1354960:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:656588-656607 Msa1354960:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:656598-656617 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:656601-656620 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:656601-656620 Msa1354960:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:655643-655662 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:655820-655839 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:656087-656106 Msa1354960:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:656135-656154 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:656187-656206 Msa1354960:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:656335-656354 Msa1354960:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:656588-656607 Msa1354960:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:656598-656617 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:656601-656620 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:656601-656620 Msa1354960:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:656339-656358 Msa1354960:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:656594-656613 Msa1354960:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:656608-656627 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:656659-656678 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:656663-656682 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:656339-656358 Msa1354960:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:656594-656613 Msa1354960:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:656608-656627 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:656659-656678 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:656663-656682 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:656342-656361 Msa1354960:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:656342-656361 Msa1354960:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 655243 656728 655243 ID=Msa1354960;Name=Msa1354960
tig0014543 mRNA 655243 656728 655243 ID=Msa1354960-mRNA-1;Parent=Msa1354960;Name=Msa1354960-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 655243 655299 655243 ID=Msa1354960-mRNA-1:exon:9268;Parent=Msa1354960-mRNA-1
tig0014543 exon 655418 655492 655418 ID=Msa1354960-mRNA-1:exon:9269;Parent=Msa1354960-mRNA-1
tig0014543 exon 655652 655730 655652 ID=Msa1354960-mRNA-1:exon:9270;Parent=Msa1354960-mRNA-1
tig0014543 exon 655852 656062 655852 ID=Msa1354960-mRNA-1:exon:9271;Parent=Msa1354960-mRNA-1
tig0014543 exon 656157 656301 656157 ID=Msa1354960-mRNA-1:exon:9272;Parent=Msa1354960-mRNA-1
tig0014543 exon 656453 656728 656453 ID=Msa1354960-mRNA-1:exon:9273;Parent=Msa1354960-mRNA-1
tig0014543 CDS 655243 655299 655243 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
tig0014543 CDS 655418 655492 655418 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
tig0014543 CDS 655652 655730 655652 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
tig0014543 CDS 655852 656062 655852 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
tig0014543 CDS 656157 656301 656157 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
tig0014543 CDS 656453 656728 656453 ID=Msa1354960-mRNA-1:cds;Parent=Msa1354960-mRNA-1
Gene Sequence

>Msa1354960

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354960

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*