AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597800 MtrunA17_Chr4g0020691 97.872 94 2 0 1 94 7 100 9.51e-65 193
Msa0597800 MtrunA17_Chr2g0284621 86.170 94 13 0 1 94 7 100 1.81e-55 169
Msa0597800 MtrunA17_Chr8g0371681 55.556 90 37 2 3 90 12 100 5.31e-27 97.4
Msa0597800 MtrunA17_Chr5g0405631 55.056 89 37 2 4 90 30 117 2.05e-25 94.0
Msa0597800 MtrunA17_Chr5g0406281 48.611 72 37 0 19 90 87 158 4.15e-20 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597800 AT2G21045.1 61.290 93 35 1 2 94 39 130 6.74e-36 121
Msa0597800 AT5G66170.1 41.818 110 55 4 2 103 12 120 4.47e-23 87.8
Msa0597800 AT2G17850.2 51.765 85 38 2 4 86 32 115 4.54e-23 87.8
Msa0597800 AT2G17850.1 51.765 85 38 2 4 86 32 115 1.49e-22 87.0
Msa0597800 AT5G66170.3 43.956 91 48 2 2 90 12 101 8.49e-22 84.7
Msa0597800 AT5G66170.2 43.956 91 48 2 2 90 12 101 8.93e-22 84.7
Msa0597800 AT5G66040.1 45.882 85 45 1 6 90 10 93 2.06e-20 80.9
Msa0597800 AT4G35770.3 43.373 83 47 0 16 98 81 163 2.17e-18 77.0
Msa0597800 AT4G35770.2 45.333 75 41 0 16 90 81 155 3.56e-18 75.9
Msa0597800 AT4G35770.1 45.333 75 41 0 16 90 81 155 8.63e-18 75.5
Msa0597800 AT2G17850.3 37.607 117 38 3 4 86 32 147 6.20e-16 70.9
Msa0597800 AT4G35770.5 46.667 60 32 0 16 75 81 140 1.52e-14 66.6

Find 28 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTGGTTAACAAAATT+TGG 0.077440 4_2:+30938020 None:intergenic
GTCATAGACTTACTGAATTA+TGG 0.234240 4_2:+30937805 None:intergenic
TCCGATGTTCACAATGCTTT+GGG 0.251930 4_2:+30936299 None:intergenic
TTCTTCTGTGCTGAACAAAT+AGG 0.311470 4_2:+30938278 None:intergenic
TTCCGATGTTCACAATGCTT+TGG 0.360579 4_2:+30936298 None:intergenic
CAAATTCAGGCTTGTAATGC+TGG 0.378391 4_2:-30937858 Msa0597800:intron
TGGGTGGATGCTGGATTTGC+AGG 0.391447 4_2:-30936399 Msa0597800:CDS
AGATGAATCTAGCAGATCTT+TGG 0.407928 4_2:+30938472 None:intergenic
TCTTCTGTGCTGAACAAATA+GGG 0.420884 4_2:+30938279 None:intergenic
GGGAGGCTACTCTGCGTGGG+TGG 0.422325 4_2:-30936415 Msa0597800:intron
TTTGGTAGCATGGACATCTA+AGG 0.431769 4_2:+30938490 None:intergenic
TCTTATATATTGCTTCTACT+TGG 0.436133 4_2:+30938006 None:intergenic
GAGGAAGATCAAGTCGAGCC+TGG 0.438094 4_2:-30937836 Msa0597800:CDS
TACTCTGCGTGGGTGGATGC+TGG 0.443842 4_2:-30936408 Msa0597800:CDS
AAAGATCTGCTAGATTCATC+TGG 0.488656 4_2:-30938470 Msa0597800:CDS
TATTTGTTCAGCACAGAAGA+AGG 0.510217 4_2:-30938276 Msa0597800:intron
TAGCCCCATATGTAAAATCA+TGG 0.510902 4_2:+30936330 None:intergenic
CGTTAATAGCATTCTCAACA+TGG 0.522680 4_2:+30938304 None:intergenic
CTAGCAGATCTTTGGTAGCA+TGG 0.528750 4_2:+30938480 None:intergenic
CCGATGTTCACAATGCTTTG+GGG 0.578869 4_2:+30936300 None:intergenic
AGGAAGATCAAGTCGAGCCT+GGG 0.580327 4_2:-30937835 Msa0597800:CDS
TGAATTATGGAGATCAACCC+AGG 0.586135 4_2:+30937818 None:intergenic
AGAAGCAATATATAAGAGTG+AGG 0.598950 4_2:-30938000 Msa0597800:CDS
GTTACAATTATCTTGATGTG+AGG 0.616591 4_2:-30938448 Msa0597800:intron
GAGTGAGGATCACTTAATTG+TGG 0.617072 4_2:-30937985 Msa0597800:intron
ATTCAGGCTTGTAATGCTGG+AGG 0.667532 4_2:-30937855 Msa0597800:intron
CCACTGAAATAGGACTGTGG+AGG 0.719443 4_2:-30938340 Msa0597800:intron
TGTCCACTGAAATAGGACTG+TGG 0.721242 4_2:-30938343 Msa0597800:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATTGAATCTAAT+GGG + chr4_2:30937128-30937147 None:intergenic 10.0%
!! TTAAAAAAAATTGAATCTAA+TGG + chr4_2:30937129-30937148 None:intergenic 10.0%
!!! ATTTGAAAAAAATAGATTTT+GGG + chr4_2:30937290-30937309 None:intergenic 10.0%
!!! TATTTGAAAAAAATAGATTT+TGG + chr4_2:30937291-30937310 None:intergenic 10.0%
!!! TTTTTTTTTCAAATGATTAA+GGG + chr4_2:30937686-30937705 None:intergenic 10.0%
!!! TTTTTTTTTTCAAATGATTA+AGG + chr4_2:30937687-30937706 None:intergenic 10.0%
!! CAAAAATAAATAAAAATAGT+AGG - chr4_2:30937831-30937850 Msa0597800:CDS 10.0%
!! ATTTAAACATATTATTAACA+TGG - chr4_2:30938377-30938396 Msa0597800:intron 10.0%
!! TTTAAACATATTATTAACAT+GGG - chr4_2:30938378-30938397 Msa0597800:intron 10.0%
!! TAAAAAAAATTGAATCTAAT+GGG + chr4_2:30937128-30937147 None:intergenic 10.0%
!! TTAAAAAAAATTGAATCTAA+TGG + chr4_2:30937129-30937148 None:intergenic 10.0%
!!! ATTTGAAAAAAATAGATTTT+GGG + chr4_2:30937290-30937309 None:intergenic 10.0%
!!! TATTTGAAAAAAATAGATTT+TGG + chr4_2:30937291-30937310 None:intergenic 10.0%
!!! TTTTTTTTTCAAATGATTAA+GGG + chr4_2:30937686-30937705 None:intergenic 10.0%
!!! TTTTTTTTTTCAAATGATTA+AGG + chr4_2:30937687-30937706 None:intergenic 10.0%
!! CAAAAATAAATAAAAATAGT+AGG - chr4_2:30937831-30937850 Msa0597800:CDS 10.0%
!! ATTTAAACATATTATTAACA+TGG - chr4_2:30938377-30938396 Msa0597800:intron 10.0%
!! TTTAAACATATTATTAACAT+GGG - chr4_2:30938378-30938397 Msa0597800:intron 10.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_2:30936408-30936427 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_2:30936409-30936428 None:intergenic 15.0%
!!! TTTTAATTTACCAAACAATT+AGG - chr4_2:30937073-30937092 Msa0597800:intron 15.0%
!! AAAAAAAATTGAATCTAATG+GGG + chr4_2:30937127-30937146 None:intergenic 15.0%
!!! TCTAAAATAAAAAAACTACT+AGG - chr4_2:30937258-30937277 Msa0597800:intron 15.0%
!!! AGATTCTAAAAAAAAAATTG+AGG + chr4_2:30937378-30937397 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_2:30937875-30937894 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_2:30937876-30937895 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_2:30938316-30938335 None:intergenic 15.0%
!! TTAAACATATTATTAACATG+GGG - chr4_2:30938379-30938398 Msa0597800:intron 15.0%
!! AAATTAAAAATGAAGAAACT+GGG + chr4_2:30936408-30936427 None:intergenic 15.0%
!! AAAATTAAAAATGAAGAAAC+TGG + chr4_2:30936409-30936428 None:intergenic 15.0%
!!! TTTTAATTTACCAAACAATT+AGG - chr4_2:30937073-30937092 Msa0597800:intron 15.0%
!! AAAAAAAATTGAATCTAATG+GGG + chr4_2:30937127-30937146 None:intergenic 15.0%
!!! TCTAAAATAAAAAAACTACT+AGG - chr4_2:30937258-30937277 Msa0597800:intron 15.0%
!!! AGATTCTAAAAAAAAAATTG+AGG + chr4_2:30937378-30937397 None:intergenic 15.0%
!! AGTAATTAATTATTACTGAT+GGG + chr4_2:30937875-30937894 None:intergenic 15.0%
!! AAGTAATTAATTATTACTGA+TGG + chr4_2:30937876-30937895 None:intergenic 15.0%
!!! AAATAATTTTGAATGCTTAA+TGG + chr4_2:30938316-30938335 None:intergenic 15.0%
!! TTAAACATATTATTAACATG+GGG - chr4_2:30938379-30938398 Msa0597800:intron 15.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_2:30936945-30936964 Msa0597800:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_2:30937040-30937059 None:intergenic 20.0%
!! TAATTGAAATCCTAATTGTT+TGG + chr4_2:30937086-30937105 None:intergenic 20.0%
!!! TATTTTTTTCAAATACATGC+AGG - chr4_2:30937296-30937315 Msa0597800:intron 20.0%
!! AACAAAACAAAAAAACAAAC+AGG - chr4_2:30937660-30937679 Msa0597800:intron 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_2:30937749-30937768 Msa0597800:intron 20.0%
!!! ATTCATTTATTTTGAGCAAA+TGG + chr4_2:30937786-30937805 None:intergenic 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_2:30938338-30938357 Msa0597800:intron 20.0%
!! TAAACATATTATTAACATGG+GGG - chr4_2:30938380-30938399 Msa0597800:intron 20.0%
!!! TTATAATGGATTACAAATTC+AGG - chr4_2:30936945-30936964 Msa0597800:intron 20.0%
!! TAATCAAAATTGAGAATTTG+AGG + chr4_2:30937040-30937059 None:intergenic 20.0%
!! TAATTGAAATCCTAATTGTT+TGG + chr4_2:30937086-30937105 None:intergenic 20.0%
!!! TATTTTTTTCAAATACATGC+AGG - chr4_2:30937296-30937315 Msa0597800:intron 20.0%
!! AACAAAACAAAAAAACAAAC+AGG - chr4_2:30937660-30937679 Msa0597800:intron 20.0%
!! TATTGTTATGTTTATTGCTA+AGG - chr4_2:30937749-30937768 Msa0597800:intron 20.0%
!!! ATTCATTTATTTTGAGCAAA+TGG + chr4_2:30937786-30937805 None:intergenic 20.0%
!! CTTTAATATATGATATGATG+TGG - chr4_2:30938338-30938357 Msa0597800:intron 20.0%
!! TAAACATATTATTAACATGG+GGG - chr4_2:30938380-30938399 Msa0597800:intron 20.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_2:30936455-30936474 None:intergenic 25.0%
!!! ATTTAATTTTCTGCTCCTTA+TGG - chr4_2:30936595-30936614 Msa0597800:intron 25.0%
!!! TTTAATTTTCTGCTCCTTAT+GGG - chr4_2:30936596-30936615 Msa0597800:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_2:30936799-30936818 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_2:30936813-30936832 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_2:30936890-30936909 Msa0597800:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_2:30936931-30936950 Msa0597800:intron 25.0%
!! GATTTTGTGTTAGAAAAATC+TGG + chr4_2:30937417-30937436 None:intergenic 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_2:30937937-30937956 Msa0597800:intron 25.0%
! GTTATTGACAAATGATTAGT+CGG + chr4_2:30938208-30938227 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_2:30938312-30938331 None:intergenic 25.0%
! AAACATATTATTAACATGGG+GGG - chr4_2:30938381-30938400 Msa0597800:intron 25.0%
! CAAAAGAAAGATAAAGACTT+TGG + chr4_2:30936455-30936474 None:intergenic 25.0%
!!! ATTTAATTTTCTGCTCCTTA+TGG - chr4_2:30936595-30936614 Msa0597800:intron 25.0%
!!! TTTAATTTTCTGCTCCTTAT+GGG - chr4_2:30936596-30936615 Msa0597800:intron 25.0%
! TCTACTTGGTTAACAAAATT+TGG + chr4_2:30936799-30936818 None:intergenic 25.0%
! TCTTATATATTGCTTCTACT+TGG + chr4_2:30936813-30936832 None:intergenic 25.0%
! TAAAACAATATGCACAAATC+AGG - chr4_2:30936890-30936909 Msa0597800:intron 25.0%
! ACACTGATGTATGATTATAA+TGG - chr4_2:30936931-30936950 Msa0597800:intron 25.0%
!! GATTTTGTGTTAGAAAAATC+TGG + chr4_2:30937417-30937436 None:intergenic 25.0%
! GAATTGGAGATGATAATAAA+TGG - chr4_2:30937937-30937956 Msa0597800:intron 25.0%
! GTTATTGACAAATGATTAGT+CGG + chr4_2:30938208-30938227 None:intergenic 25.0%
!! AATTTTGAATGCTTAATGGA+TGG + chr4_2:30938312-30938331 None:intergenic 25.0%
! AAACATATTATTAACATGGG+GGG - chr4_2:30938381-30938400 Msa0597800:intron 25.0%
GTTACAATTATCTTGATGTG+AGG - chr4_2:30936368-30936387 Msa0597800:CDS 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_2:30936381-30936400 Msa0597800:CDS 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_2:30936466-30936485 Msa0597800:intron 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_2:30936816-30936835 Msa0597800:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_2:30937014-30937033 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_2:30937036-30937055 None:intergenic 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_2:30937921-30937940 Msa0597800:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_2:30937930-30937949 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_2:30938000-30938019 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_2:30938077-30938096 Msa0597800:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_2:30938078-30938097 Msa0597800:intron 30.0%
AGAAATTTGTGCATGCAAAA+GGG + chr4_2:30938176-30938195 None:intergenic 30.0%
AAGAAATTTGTGCATGCAAA+AGG + chr4_2:30938177-30938196 None:intergenic 30.0%
! TTCGTCCATGATTTTACATA+TGG - chr4_2:30938481-30938500 Msa0597800:CDS 30.0%
! TCGTCCATGATTTTACATAT+GGG - chr4_2:30938482-30938501 Msa0597800:CDS 30.0%
GTTACAATTATCTTGATGTG+AGG - chr4_2:30936368-30936387 Msa0597800:CDS 30.0%
TGATGTGAGGTAATTAACAA+AGG - chr4_2:30936381-30936400 Msa0597800:CDS 30.0%
! TTTCTTTTGTCCACTGAAAT+AGG - chr4_2:30936466-30936485 Msa0597800:intron 30.0%
AGAAGCAATATATAAGAGTG+AGG - chr4_2:30936816-30936835 Msa0597800:intron 30.0%
GTCATAGACTTACTGAATTA+TGG + chr4_2:30937014-30937033 None:intergenic 30.0%
! CAAAATTGAGAATTTGAGGT+TGG + chr4_2:30937036-30937055 None:intergenic 30.0%
ATCTCTCCAAATGAAAGAAT+TGG - chr4_2:30937921-30937940 Msa0597800:intron 30.0%
TCATCTCCAATTCTTTCATT+TGG + chr4_2:30937930-30937949 None:intergenic 30.0%
TTGTGTATGTTGAAGTTACA+TGG + chr4_2:30938000-30938019 None:intergenic 30.0%
! AATCCATTTTGTGTACGTAA+TGG - chr4_2:30938077-30938096 Msa0597800:intron 30.0%
! ATCCATTTTGTGTACGTAAT+GGG - chr4_2:30938078-30938097 Msa0597800:intron 30.0%
AGAAATTTGTGCATGCAAAA+GGG + chr4_2:30938176-30938195 None:intergenic 30.0%
AAGAAATTTGTGCATGCAAA+AGG + chr4_2:30938177-30938196 None:intergenic 30.0%
! TTCGTCCATGATTTTACATA+TGG - chr4_2:30938481-30938500 Msa0597800:CDS 30.0%
! TCGTCCATGATTTTACATAT+GGG - chr4_2:30938482-30938501 Msa0597800:CDS 30.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_2:30936347-30936366 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_2:30936346-30936365 Msa0597800:CDS 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_2:30936515-30936534 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_2:30936540-30936559 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_2:30936541-30936560 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_2:30936540-30936559 Msa0597800:intron 35.0%
!! TTCGTCTAATGTTGGTTTCT+TGG - chr4_2:30937498-30937517 Msa0597800:intron 35.0%
ATGATCTCATAGACATGCTT+AGG - chr4_2:30937539-30937558 Msa0597800:intron 35.0%
ATGCTTAGGAATGATGCTAT+GGG - chr4_2:30937553-30937572 Msa0597800:intron 35.0%
ATAGAAAAGCTCAAGCTCTT+AGG + chr4_2:30937588-30937607 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_2:30938055-30938074 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_2:30938068-30938087 None:intergenic 35.0%
! GACAAATGATTAGTCGGTTT+CGG + chr4_2:30938202-30938221 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_2:30938308-30938327 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_2:30938309-30938328 None:intergenic 35.0%
! CGTCCATGATTTTACATATG+GGG - chr4_2:30938483-30938502 Msa0597800:CDS 35.0%
TAGCCCCATATGTAAAATCA+TGG + chr4_2:30938489-30938508 None:intergenic 35.0%
AGATGAATCTAGCAGATCTT+TGG + chr4_2:30936347-30936366 None:intergenic 35.0%
AAAGATCTGCTAGATTCATC+TGG - chr4_2:30936346-30936365 Msa0597800:CDS 35.0%
CGTTAATAGCATTCTCAACA+TGG + chr4_2:30936515-30936534 None:intergenic 35.0%
TCTTCTGTGCTGAACAAATA+GGG + chr4_2:30936540-30936559 None:intergenic 35.0%
TTCTTCTGTGCTGAACAAAT+AGG + chr4_2:30936541-30936560 None:intergenic 35.0%
TATTTGTTCAGCACAGAAGA+AGG - chr4_2:30936540-30936559 Msa0597800:intron 35.0%
!! TTCGTCTAATGTTGGTTTCT+TGG - chr4_2:30937498-30937517 Msa0597800:intron 35.0%
ATGATCTCATAGACATGCTT+AGG - chr4_2:30937539-30937558 Msa0597800:intron 35.0%
ATGCTTAGGAATGATGCTAT+GGG - chr4_2:30937553-30937572 Msa0597800:intron 35.0%
ATAGAAAAGCTCAAGCTCTT+AGG + chr4_2:30937588-30937607 None:intergenic 35.0%
! TCTATCGTGGATGCTTTTAA+TGG + chr4_2:30938055-30938074 None:intergenic 35.0%
! CAAAATGGATTTCTCTATCG+TGG + chr4_2:30938068-30938087 None:intergenic 35.0%
! GACAAATGATTAGTCGGTTT+CGG + chr4_2:30938202-30938221 None:intergenic 35.0%
! TTGAATGCTTAATGGATGGA+GGG + chr4_2:30938308-30938327 None:intergenic 35.0%
! TTTGAATGCTTAATGGATGG+AGG + chr4_2:30938309-30938328 None:intergenic 35.0%
! CGTCCATGATTTTACATATG+GGG - chr4_2:30938483-30938502 Msa0597800:CDS 35.0%
TAGCCCCATATGTAAAATCA+TGG + chr4_2:30938489-30938508 None:intergenic 35.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_2:30936329-30936348 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_2:30936548-30936567 Msa0597800:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_2:30936760-30936779 Msa0597800:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_2:30936764-30936783 Msa0597800:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_2:30936765-30936784 Msa0597800:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_2:30936831-30936850 Msa0597800:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_2:30936958-30936977 Msa0597800:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_2:30937001-30937020 None:intergenic 40.0%
ATGATTTCTTGGCCAAGCTA+GGG - chr4_2:30937473-30937492 Msa0597800:intron 40.0%
TGTCTATGAGATCATGAGGA+GGG + chr4_2:30937534-30937553 None:intergenic 40.0%
ATGTCTATGAGATCATGAGG+AGG + chr4_2:30937535-30937554 None:intergenic 40.0%
AGCATGTCTATGAGATCATG+AGG + chr4_2:30937538-30937557 None:intergenic 40.0%
CATGCTTAGGAATGATGCTA+TGG - chr4_2:30937552-30937571 Msa0597800:intron 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_2:30937965-30937984 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_2:30938083-30938102 None:intergenic 40.0%
! TTAAAGAGGTGTAAGACTCG+CGG - chr4_2:30938259-30938278 Msa0597800:intron 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_2:30938353-30938372 Msa0597800:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_2:30938354-30938373 Msa0597800:intron 40.0%
CATATTATTAACATGGGGGG+AGG - chr4_2:30938384-30938403 Msa0597800:intron 40.0%
!!! CTTGTTTTAAGCTCTTCTGC+AGG + chr4_2:30938453-30938472 None:intergenic 40.0%
! TTTGGTAGCATGGACATCTA+AGG + chr4_2:30936329-30936348 None:intergenic 40.0%
CAGCACAGAAGAAGGTAATA+TGG - chr4_2:30936548-30936567 Msa0597800:intron 40.0%
TGTGCTTACAACTGATCAAC+AGG - chr4_2:30936760-30936779 Msa0597800:intron 40.0%
CTTACAACTGATCAACAGGA+CGG - chr4_2:30936764-30936783 Msa0597800:intron 40.0%
TTACAACTGATCAACAGGAC+GGG - chr4_2:30936765-30936784 Msa0597800:intron 40.0%
GAGTGAGGATCACTTAATTG+TGG - chr4_2:30936831-30936850 Msa0597800:intron 40.0%
CAAATTCAGGCTTGTAATGC+TGG - chr4_2:30936958-30936977 Msa0597800:intron 40.0%
TGAATTATGGAGATCAACCC+AGG + chr4_2:30937001-30937020 None:intergenic 40.0%
ATGATTTCTTGGCCAAGCTA+GGG - chr4_2:30937473-30937492 Msa0597800:intron 40.0%
TGTCTATGAGATCATGAGGA+GGG + chr4_2:30937534-30937553 None:intergenic 40.0%
ATGTCTATGAGATCATGAGG+AGG + chr4_2:30937535-30937554 None:intergenic 40.0%
AGCATGTCTATGAGATCATG+AGG + chr4_2:30937538-30937557 None:intergenic 40.0%
CATGCTTAGGAATGATGCTA+TGG - chr4_2:30937552-30937571 Msa0597800:intron 40.0%
TAGCTAGCGATAAACGAGTT+AGG + chr4_2:30937965-30937984 None:intergenic 40.0%
GACCCATTACGTACACAAAA+TGG + chr4_2:30938083-30938102 None:intergenic 40.0%
! TTAAAGAGGTGTAAGACTCG+CGG - chr4_2:30938259-30938278 Msa0597800:intron 40.0%
TGATGTGGTAATTAACGAGC+AGG - chr4_2:30938353-30938372 Msa0597800:intron 40.0%
GATGTGGTAATTAACGAGCA+GGG - chr4_2:30938354-30938373 Msa0597800:intron 40.0%
CATATTATTAACATGGGGGG+AGG - chr4_2:30938384-30938403 Msa0597800:intron 40.0%
!!! CTTGTTTTAAGCTCTTCTGC+AGG + chr4_2:30938453-30938472 None:intergenic 40.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_2:30936339-30936358 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_2:30936473-30936492 Msa0597800:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_2:30936602-30936621 Msa0597800:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_2:30936613-30936632 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_2:30936961-30936980 Msa0597800:intron 45.0%
GACCCTTCCTCATGATTTCT+TGG - chr4_2:30937462-30937481 Msa0597800:intron 45.0%
GGCCAAGAAATCATGAGGAA+GGG + chr4_2:30937467-30937486 None:intergenic 45.0%
TGGCCAAGAAATCATGAGGA+AGG + chr4_2:30937468-30937487 None:intergenic 45.0%
AGCTTGGCCAAGAAATCATG+AGG + chr4_2:30937472-30937491 None:intergenic 45.0%
CATGATTTCTTGGCCAAGCT+AGG - chr4_2:30937472-30937491 Msa0597800:intron 45.0%
TGATTTCTTGGCCAAGCTAG+GGG - chr4_2:30937474-30937493 Msa0597800:intron 45.0%
GTCTATGAGATCATGAGGAG+GGG + chr4_2:30937533-30937552 None:intergenic 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_2:30937967-30937986 Msa0597800:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_2:30938086-30938105 Msa0597800:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_2:30938087-30938106 Msa0597800:intron 45.0%
! TAAAGAGGTGTAAGACTCGC+GGG - chr4_2:30938260-30938279 Msa0597800:intron 45.0%
! CTAGCAGATCTTTGGTAGCA+TGG + chr4_2:30936339-30936358 None:intergenic 45.0%
TGTCCACTGAAATAGGACTG+TGG - chr4_2:30936473-30936492 Msa0597800:intron 45.0%
TTTCTGCTCCTTATGGGTAG+AGG - chr4_2:30936602-30936621 Msa0597800:intron 45.0%
TGTTGCTACCTCTACCCATA+AGG + chr4_2:30936613-30936632 None:intergenic 45.0%
ATTCAGGCTTGTAATGCTGG+AGG - chr4_2:30936961-30936980 Msa0597800:intron 45.0%
GACCCTTCCTCATGATTTCT+TGG - chr4_2:30937462-30937481 Msa0597800:intron 45.0%
GGCCAAGAAATCATGAGGAA+GGG + chr4_2:30937467-30937486 None:intergenic 45.0%
TGGCCAAGAAATCATGAGGA+AGG + chr4_2:30937468-30937487 None:intergenic 45.0%
AGCTTGGCCAAGAAATCATG+AGG + chr4_2:30937472-30937491 None:intergenic 45.0%
CATGATTTCTTGGCCAAGCT+AGG - chr4_2:30937472-30937491 Msa0597800:intron 45.0%
TGATTTCTTGGCCAAGCTAG+GGG - chr4_2:30937474-30937493 Msa0597800:intron 45.0%
GTCTATGAGATCATGAGGAG+GGG + chr4_2:30937533-30937552 None:intergenic 45.0%
CTCGTTTATCGCTAGCTAAG+TGG - chr4_2:30937967-30937986 Msa0597800:intron 45.0%
!! TGTGTACGTAATGGGTCTCA+TGG - chr4_2:30938086-30938105 Msa0597800:intron 45.0%
!! GTGTACGTAATGGGTCTCAT+GGG - chr4_2:30938087-30938106 Msa0597800:intron 45.0%
! TAAAGAGGTGTAAGACTCGC+GGG - chr4_2:30938260-30938279 Msa0597800:intron 45.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_2:30937101-30937120 Msa0597800:intron 5.0%
!!! ATTATTTTTTTATATTAAAG+AGG - chr4_2:30938245-30938264 Msa0597800:intron 5.0%
!! AATTATCTTAATATAAATTT+AGG - chr4_2:30937101-30937120 Msa0597800:intron 5.0%
!!! ATTATTTTTTTATATTAAAG+AGG - chr4_2:30938245-30938264 Msa0597800:intron 5.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_2:30936479-30936498 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_2:30936476-30936495 Msa0597800:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_2:30936981-30937000 Msa0597800:intron 50.0%
ATTAGACGAAGCCCCTAGCT+TGG + chr4_2:30937488-30937507 None:intergenic 50.0%
CTAGGGGCTTCGTCTAATGT+TGG - chr4_2:30937490-30937509 Msa0597800:intron 50.0%
CCTCCACAGTCCTATTTCAG+TGG + chr4_2:30936479-30936498 None:intergenic 50.0%
CCACTGAAATAGGACTGTGG+AGG - chr4_2:30936476-30936495 Msa0597800:intron 50.0%
AGGAAGATCAAGTCGAGCCT+GGG - chr4_2:30936981-30937000 Msa0597800:intron 50.0%
ATTAGACGAAGCCCCTAGCT+TGG + chr4_2:30937488-30937507 None:intergenic 50.0%
CTAGGGGCTTCGTCTAATGT+TGG - chr4_2:30937490-30937509 Msa0597800:intron 50.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_2:30936980-30936999 Msa0597800:intron 55.0%
TGGGTGGATGCTGGATTTGC+AGG - chr4_2:30938417-30938436 Msa0597800:intron 55.0%
GAGGAAGATCAAGTCGAGCC+TGG - chr4_2:30936980-30936999 Msa0597800:intron 55.0%
TGGGTGGATGCTGGATTTGC+AGG - chr4_2:30938417-30938436 Msa0597800:intron 55.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_2:30938408-30938427 Msa0597800:intron 60.0%
TACTCTGCGTGGGTGGATGC+TGG - chr4_2:30938408-30938427 Msa0597800:intron 60.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_2:30938397-30938416 Msa0597800:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_2:30938398-30938417 Msa0597800:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_2:30938401-30938420 Msa0597800:intron 70.0%
TGGGGGGAGGCTACTCTGCG+TGG - chr4_2:30938397-30938416 Msa0597800:intron 70.0%
GGGGGGAGGCTACTCTGCGT+GGG - chr4_2:30938398-30938417 Msa0597800:intron 70.0%
GGGAGGCTACTCTGCGTGGG+TGG - chr4_2:30938401-30938420 Msa0597800:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 30936310 30938528 30936310 ID=Msa0597800;Name=Msa0597800
chr4_2 mRNA 30936310 30938528 30936310 ID=Msa0597800-mRNA-1;Parent=Msa0597800;Name=Msa0597800-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|0.75|0.6|5|0|134
chr4_2 exon 30938449 30938528 30938449 ID=Msa0597800-mRNA-1:exon:7751;Parent=Msa0597800-mRNA-1
chr4_2 exon 30938277 30938350 30938277 ID=Msa0597800-mRNA-1:exon:7750;Parent=Msa0597800-mRNA-1
chr4_2 exon 30937986 30938056 30937986 ID=Msa0597800-mRNA-1:exon:7749;Parent=Msa0597800-mRNA-1
chr4_2 exon 30937818 30937871 30937818 ID=Msa0597800-mRNA-1:exon:7748;Parent=Msa0597800-mRNA-1
chr4_2 exon 30936310 30936432 30936310 ID=Msa0597800-mRNA-1:exon:7747;Parent=Msa0597800-mRNA-1
chr4_2 CDS 30938449 30938528 30938449 ID=Msa0597800-mRNA-1:cds;Parent=Msa0597800-mRNA-1
chr4_2 CDS 30938277 30938350 30938277 ID=Msa0597800-mRNA-1:cds;Parent=Msa0597800-mRNA-1
chr4_2 CDS 30937986 30938056 30937986 ID=Msa0597800-mRNA-1:cds;Parent=Msa0597800-mRNA-1
chr4_2 CDS 30937818 30937871 30937818 ID=Msa0597800-mRNA-1:cds;Parent=Msa0597800-mRNA-1
chr4_2 CDS 30936310 30936432 30936310 ID=Msa0597800-mRNA-1:cds;Parent=Msa0597800-mRNA-1
Gene Sequence

>Msa0597800

CATCAAGATGTTGTTACCTTAGATGTCCATGCTACCAAAGATCTGCTAGATTCATCTGGTTACAATTATCTTGATGTGAGGACTGTGGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAACGTACCCTATTTGTTCAGCACAGAAGAAGGACGGGTGAAAAATCCAAATTTTGTTAACCAAGTAGAAGCAATATATAAGAGTGAGGATCACTTAATTGTGGCTTGTAATGCTGGAGGAAGATCAAGTCGAGCCTGGGTTGATCTCCATAATTCAGCTACTCTGCGTGGGTGGATGCTGGATTTGCAGGTGATGACAAGCCTGCAGAAGAGCTTAAAACAAGTTGCAAGTTTCGTCCATGATTTTACATATGGGGCTATGTATTTCCCCAAAGCATTG

Protein sequence

>Msa0597800

HQDVVTLDVHATKDLLDSSGYNYLDVRTVEEFNKSHVENAINVPYLFSTEEGRVKNPNFVNQVEAIYKSEDHLIVACNAGGRSSRAWVDLHNSATLRGWMLDLQVMTSLQKSLKQVASFVHDFTYGAMYFPKAL