Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291880 | AES66446.1 | 100.000 | 58 | 0 | 0 | 1 | 58 | 1 | 58 | 1.08e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030800 | Msa0291880 | 0.805545 | 1.267574e-49 | -8.615850e-47 |
| Msa0097340 | Msa0291880 | 0.803460 | 3.449397e-49 | -8.615850e-47 |
| Msa0116480 | Msa0291880 | 0.804255 | 2.358561e-49 | -8.615850e-47 |
| Msa0196420 | Msa0291880 | 0.808835 | 2.548294e-50 | -8.615850e-47 |
| Msa0207930 | Msa0291880 | 0.808468 | 3.051809e-50 | -8.615850e-47 |
| Msa0207970 | Msa0291880 | 0.843291 | 1.533596e-58 | -8.615850e-47 |
| Msa0214630 | Msa0291880 | 0.806517 | 7.917099e-50 | -8.615850e-47 |
| Msa0238330 | Msa0291880 | 0.816747 | 4.716134e-52 | -8.615850e-47 |
| Msa0255010 | Msa0291880 | 0.801944 | 7.089235e-49 | -8.615850e-47 |
| Msa0257930 | Msa0291880 | 0.852142 | 5.604844e-61 | -8.615850e-47 |
| Msa0267900 | Msa0291880 | 0.810672 | 1.026111e-50 | -8.615850e-47 |
| Msa0291880 | Msa0296930 | 0.854406 | 1.257558e-61 | -8.615850e-47 |
| Msa0291880 | Msa0378240 | 0.839325 | 1.695230e-57 | -8.615850e-47 |
| Msa0291880 | Msa0427740 | 0.806894 | 6.590050e-50 | -8.615850e-47 |
| Msa0291880 | Msa0427970 | 0.804868 | 1.756742e-49 | -8.615850e-47 |
| Msa0291880 | Msa0473940 | 0.818786 | 1.633964e-52 | -8.615850e-47 |
| Msa0291880 | Msa0485290 | 0.814622 | 1.402542e-51 | -8.615850e-47 |
| Msa0291880 | Msa0518340 | 0.819113 | 1.377042e-52 | -8.615850e-47 |
| Msa0291880 | Msa0518570 | 0.807490 | 4.928451e-50 | -8.615850e-47 |
| Msa0291880 | Msa0572700 | 0.823698 | 1.204288e-53 | -8.615850e-47 |
| Msa0291880 | Msa0657260 | 0.841595 | 4.321116e-58 | -8.615850e-47 |
| Msa0291880 | Msa0666580 | 0.801687 | 8.005732e-49 | -8.615850e-47 |
| Msa0291880 | Msa0701490 | 0.828666 | 7.920971e-55 | -8.615850e-47 |
| Msa0291880 | Msa0701560 | 0.825927 | 3.589169e-54 | -8.615850e-47 |
| Msa0291880 | Msa1151070 | 0.802078 | 6.652392e-49 | -8.615850e-47 |
| Msa0291880 | Msa1235780 | 0.805158 | 1.527826e-49 | -8.615850e-47 |
| Msa0291880 | Msa1262320 | 0.817289 | 3.562355e-52 | -8.615850e-47 |
| Msa0291880 | Msa1378020 | 0.821490 | 3.927239e-53 | -8.615850e-47 |
| Msa0291880 | Msa1399430 | -0.833799 | 4.332893e-56 | -8.615850e-47 |
| Msa0291880 | Msa1408320 | 0.823281 | 1.507044e-53 | -8.615850e-47 |
| Msa0291880 | Msa1438160 | 0.825119 | 5.576905e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0291880 | MtrunA17_Chr2g0312011 | 100.000 | 58 | 0 | 0 | 1 | 58 | 1 | 58 | 9.97e-39 | 124 |
| Msa0291880 | MtrunA17_Chr2g0312051 | 57.377 | 61 | 22 | 1 | 1 | 57 | 1 | 61 | 1.96e-15 | 65.9 |
| Msa0291880 | MtrunA17_Chr4g0048281 | 57.377 | 61 | 19 | 3 | 4 | 57 | 5 | 65 | 1.17e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 41 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCAGGGGTGATGGTTTC+TGG | 0.154253 | 2_3:+40613935 | Msa0291880:CDS |
| AATATTTGTGCTTGTCTTCA+TGG | 0.210203 | 2_3:+40614470 | Msa0291880:CDS |
| TAAAGATCCATGTTACAAAT+TGG | 0.278218 | 2_3:-40614574 | None:intergenic |
| AGGATACAAAGATTCTTATT+AGG | 0.301506 | 2_3:-40614530 | None:intergenic |
| TCCAAGTGTGTGTGATTAAC+TGG | 0.369868 | 2_3:-40613498 | None:intergenic |
| TTTAATTGGAACACTTTGTT+GGG | 0.371717 | 2_3:-40613908 | None:intergenic |
| ATAAGAATCTTTGTATCCTA+TGG | 0.390499 | 2_3:+40614534 | Msa0291880:CDS |
| AGCTGTTCCACCACCACCTA+TGG | 0.399384 | 2_3:+40613864 | Msa0291880:CDS |
| ATTATGTTGTTGCTGTGCCC+TGG | 0.400888 | 2_3:+40614406 | Msa0291880:CDS |
| ATATTGTGACTCATTGTGTT+AGG | 0.426555 | 2_3:-40613583 | None:intergenic |
| ACTTTGTTGGGGATCATCCT+TGG | 0.445500 | 2_3:-40613896 | None:intergenic |
| CTGATCGAATATCATACAAC+TGG | 0.456561 | 2_3:+40614439 | Msa0291880:CDS |
| TCGATCAGAGGCAACAATCC+AGG | 0.459282 | 2_3:-40614424 | None:intergenic |
| TTGTTGGGGATCATCCTTGG+AGG | 0.481114 | 2_3:-40613893 | None:intergenic |
| GGGTTGTTCTGACTCACTGC+TGG | 0.483166 | 2_3:-40613838 | None:intergenic |
| TTCCAATTAAAACAACTAGC+AGG | 0.486226 | 2_3:+40613920 | Msa0291880:CDS |
| GGATAACCCATAGGTGGTGG+TGG | 0.506331 | 2_3:-40613871 | None:intergenic |
| AAAACAACTAGCAGGGGTGA+TGG | 0.528737 | 2_3:+40613928 | Msa0291880:CDS |
| ATCAATCAACAACAATCTCC+TGG | 0.529469 | 2_3:+40613604 | Msa0291880:CDS |
| TAAGAATCTTTGTATCCTAT+GGG | 0.536702 | 2_3:+40614535 | Msa0291880:CDS |
| GGTGGTGGTGGAACAGCTTG+AGG | 0.543912 | 2_3:-40613859 | None:intergenic |
| CGATCAGAGGCAACAATCCA+GGG | 0.546345 | 2_3:-40614423 | None:intergenic |
| TCCAGTTAATCACACACACT+TGG | 0.546579 | 2_3:+40613497 | Msa0291880:five_prime_UTR |
| GTGGTGGTGGAACAGCTTGA+GGG | 0.555087 | 2_3:-40613858 | None:intergenic |
| GAGGGATAACCCATAGGTGG+TGG | 0.556470 | 2_3:-40613874 | None:intergenic |
| CAAAGATTCTTATTAGGTGA+GGG | 0.558800 | 2_3:-40614524 | None:intergenic |
| TCCAATTAAAACAACTAGCA+GGG | 0.562056 | 2_3:+40613921 | Msa0291880:CDS |
| ACAAAGATTCTTATTAGGTG+AGG | 0.569641 | 2_3:-40614525 | None:intergenic |
| AGGGGTGATGGTTTCTGGAA+AGG | 0.573043 | 2_3:+40613940 | Msa0291880:CDS |
| ATTCATACCAATTTGTAACA+TGG | 0.575973 | 2_3:+40614567 | Msa0291880:exon |
| GCTGTTCCACCACCACCTAT+GGG | 0.592890 | 2_3:+40613865 | Msa0291880:CDS |
| ACCTATGGGTTATCCCTCCA+AGG | 0.593969 | 2_3:+40613879 | Msa0291880:CDS |
| GTGATGGTTTCTGGAAAGGA+TGG | 0.594474 | 2_3:+40613944 | Msa0291880:CDS |
| GTTGTATGATATTCGATCAG+AGG | 0.597281 | 2_3:-40614436 | None:intergenic |
| TGTTGGGGATCATCCTTGGA+GGG | 0.597882 | 2_3:-40613892 | None:intergenic |
| TTAATTGGAACACTTTGTTG+GGG | 0.602125 | 2_3:-40613907 | None:intergenic |
| CCAATTAAAACAACTAGCAG+GGG | 0.643519 | 2_3:+40613922 | Msa0291880:CDS |
| TCCTTGGAGGGATAACCCAT+AGG | 0.667495 | 2_3:-40613880 | None:intergenic |
| TAACTGGACGATGAGAAGAA+CGG | 0.674180 | 2_3:-40613482 | None:intergenic |
| TTGGAGGGATAACCCATAGG+TGG | 0.675232 | 2_3:-40613877 | None:intergenic |
| TTGCAACGACACAAGTACAA+AGG | 0.678074 | 2_3:-40614601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTTATAGTTATTAATT+AGG | - | chr2_3:40613988-40614007 | None:intergenic | 10.0% |
| !! | TATAGTTATAGTTATTAATT+AGG | - | chr2_3:40613988-40614007 | None:intergenic | 10.0% |
| !! | ATAATTAAAAAAAACTTACC+AGG | - | chr2_3:40613625-40613644 | None:intergenic | 15.0% |
| !! | CATTTCTATAAGAAATAATT+TGG | + | chr2_3:40613761-40613780 | Msa0291880:intron | 15.0% |
| !! | AACTGCAAAAAAAAAAAAAA+AGG | - | chr2_3:40614379-40614398 | None:intergenic | 15.0% |
| !! | ATAATTAAAAAAAACTTACC+AGG | - | chr2_3:40613625-40613644 | None:intergenic | 15.0% |
| !! | CATTTCTATAAGAAATAATT+TGG | + | chr2_3:40613761-40613780 | Msa0291880:intron | 15.0% |
| !! | AACTGCAAAAAAAAAAAAAA+AGG | - | chr2_3:40614379-40614398 | None:intergenic | 15.0% |
| !! | CAAAAAAATTAAACGATTCT+AGG | - | chr2_3:40613727-40613746 | None:intergenic | 20.0% |
| !!! | GCGATAACTTTTTTTTTTAA+TGG | - | chr2_3:40614190-40614209 | None:intergenic | 20.0% |
| !! | TATTTATGCTAAAAACAGTT+TGG | - | chr2_3:40614336-40614355 | None:intergenic | 20.0% |
| !! | CAAAAAAATTAAACGATTCT+AGG | - | chr2_3:40613727-40613746 | None:intergenic | 20.0% |
| !!! | GCGATAACTTTTTTTTTTAA+TGG | - | chr2_3:40614190-40614209 | None:intergenic | 20.0% |
| !! | TATTTATGCTAAAAACAGTT+TGG | - | chr2_3:40614336-40614355 | None:intergenic | 20.0% |
| ! | TTTAATTGGAACACTTTGTT+GGG | - | chr2_3:40613911-40613930 | None:intergenic | 25.0% |
| !!! | TTTTAATTGGAACACTTTGT+TGG | - | chr2_3:40613912-40613931 | None:intergenic | 25.0% |
| !! | TAACTTCTTTTCCTTTAACT+CGG | - | chr2_3:40614100-40614119 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTCTCCTTTGTTA+GGG | - | chr2_3:40614140-40614159 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTTCTCCTTTGTT+AGG | - | chr2_3:40614141-40614160 | None:intergenic | 25.0% |
| ! | AGGATACAAAGATTCTTATT+AGG | - | chr2_3:40614533-40614552 | None:intergenic | 25.0% |
| ! | ATAAGAATCTTTGTATCCTA+TGG | + | chr2_3:40614534-40614553 | Msa0291880:CDS | 25.0% |
| ! | TAAGAATCTTTGTATCCTAT+GGG | + | chr2_3:40614535-40614554 | Msa0291880:CDS | 25.0% |
| ! | ATTCATACCAATTTGTAACA+TGG | + | chr2_3:40614567-40614586 | Msa0291880:exon | 25.0% |
| ! | TAAAGATCCATGTTACAAAT+TGG | - | chr2_3:40614577-40614596 | None:intergenic | 25.0% |
| ! | TTTAATTGGAACACTTTGTT+GGG | - | chr2_3:40613911-40613930 | None:intergenic | 25.0% |
| !!! | TTTTAATTGGAACACTTTGT+TGG | - | chr2_3:40613912-40613931 | None:intergenic | 25.0% |
| !! | TAACTTCTTTTCCTTTAACT+CGG | - | chr2_3:40614100-40614119 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTCTCCTTTGTTA+GGG | - | chr2_3:40614140-40614159 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTTCTCCTTTGTT+AGG | - | chr2_3:40614141-40614160 | None:intergenic | 25.0% |
| ! | AGGATACAAAGATTCTTATT+AGG | - | chr2_3:40614533-40614552 | None:intergenic | 25.0% |
| ! | ATAAGAATCTTTGTATCCTA+TGG | + | chr2_3:40614534-40614553 | Msa0291880:CDS | 25.0% |
| ! | TAAGAATCTTTGTATCCTAT+GGG | + | chr2_3:40614535-40614554 | Msa0291880:CDS | 25.0% |
| ! | ATTCATACCAATTTGTAACA+TGG | + | chr2_3:40614567-40614586 | Msa0291880:exon | 25.0% |
| ! | TAAAGATCCATGTTACAAAT+TGG | - | chr2_3:40614577-40614596 | None:intergenic | 25.0% |
| ATATTGTGACTCATTGTGTT+AGG | - | chr2_3:40613586-40613605 | None:intergenic | 30.0% | |
| CTAGGCTTGAATATAAAACA+TGG | - | chr2_3:40613709-40613728 | None:intergenic | 30.0% | |
| TTAATTGGAACACTTTGTTG+GGG | - | chr2_3:40613910-40613929 | None:intergenic | 30.0% | |
| TTCCAATTAAAACAACTAGC+AGG | + | chr2_3:40613920-40613939 | Msa0291880:CDS | 30.0% | |
| TCCAATTAAAACAACTAGCA+GGG | + | chr2_3:40613921-40613940 | Msa0291880:CDS | 30.0% | |
| GAAATTGAAAACCGAGTTAA+AGG | + | chr2_3:40614086-40614105 | Msa0291880:intron | 30.0% | |
| GTTAAAGGAAAAGAAGTTAG+AGG | + | chr2_3:40614101-40614120 | Msa0291880:intron | 30.0% | |
| !!! | TTTTTTTTTTGCAGTTGTGC+TGG | + | chr2_3:40614383-40614402 | Msa0291880:intron | 30.0% |
| AATATTTGTGCTTGTCTTCA+TGG | + | chr2_3:40614470-40614489 | Msa0291880:CDS | 30.0% | |
| CAAAGATTCTTATTAGGTGA+GGG | - | chr2_3:40614527-40614546 | None:intergenic | 30.0% | |
| ACAAAGATTCTTATTAGGTG+AGG | - | chr2_3:40614528-40614547 | None:intergenic | 30.0% | |
| ATATTGTGACTCATTGTGTT+AGG | - | chr2_3:40613586-40613605 | None:intergenic | 30.0% | |
| CTAGGCTTGAATATAAAACA+TGG | - | chr2_3:40613709-40613728 | None:intergenic | 30.0% | |
| TTAATTGGAACACTTTGTTG+GGG | - | chr2_3:40613910-40613929 | None:intergenic | 30.0% | |
| TTCCAATTAAAACAACTAGC+AGG | + | chr2_3:40613920-40613939 | Msa0291880:CDS | 30.0% | |
| TCCAATTAAAACAACTAGCA+GGG | + | chr2_3:40613921-40613940 | Msa0291880:CDS | 30.0% | |
| GAAATTGAAAACCGAGTTAA+AGG | + | chr2_3:40614086-40614105 | Msa0291880:intron | 30.0% | |
| GTTAAAGGAAAAGAAGTTAG+AGG | + | chr2_3:40614101-40614120 | Msa0291880:intron | 30.0% | |
| !!! | TTTTTTTTTTGCAGTTGTGC+TGG | + | chr2_3:40614383-40614402 | Msa0291880:intron | 30.0% |
| AATATTTGTGCTTGTCTTCA+TGG | + | chr2_3:40614470-40614489 | Msa0291880:CDS | 30.0% | |
| CAAAGATTCTTATTAGGTGA+GGG | - | chr2_3:40614527-40614546 | None:intergenic | 30.0% | |
| ACAAAGATTCTTATTAGGTG+AGG | - | chr2_3:40614528-40614547 | None:intergenic | 30.0% | |
| ATCAATCAACAACAATCTCC+TGG | + | chr2_3:40613604-40613623 | Msa0291880:CDS | 35.0% | |
| CGAAATACACAACACAAGTT+AGG | - | chr2_3:40613799-40613818 | None:intergenic | 35.0% | |
| CCAATTAAAACAACTAGCAG+GGG | + | chr2_3:40613922-40613941 | Msa0291880:CDS | 35.0% | |
| !! | GAAAAGAAGTTAGAGGTGTT+AGG | + | chr2_3:40614108-40614127 | Msa0291880:intron | 35.0% |
| TTAGGTTCAAACCCTAACAA+AGG | + | chr2_3:40614126-40614145 | Msa0291880:intron | 35.0% | |
| GTTGTATGATATTCGATCAG+AGG | - | chr2_3:40614439-40614458 | None:intergenic | 35.0% | |
| CTGATCGAATATCATACAAC+TGG | + | chr2_3:40614439-40614458 | Msa0291880:CDS | 35.0% | |
| ATCAATCAACAACAATCTCC+TGG | + | chr2_3:40613604-40613623 | Msa0291880:CDS | 35.0% | |
| CGAAATACACAACACAAGTT+AGG | - | chr2_3:40613799-40613818 | None:intergenic | 35.0% | |
| CCAATTAAAACAACTAGCAG+GGG | + | chr2_3:40613922-40613941 | Msa0291880:CDS | 35.0% | |
| !! | GAAAAGAAGTTAGAGGTGTT+AGG | + | chr2_3:40614108-40614127 | Msa0291880:intron | 35.0% |
| TTAGGTTCAAACCCTAACAA+AGG | + | chr2_3:40614126-40614145 | Msa0291880:intron | 35.0% | |
| GTTGTATGATATTCGATCAG+AGG | - | chr2_3:40614439-40614458 | None:intergenic | 35.0% | |
| CTGATCGAATATCATACAAC+TGG | + | chr2_3:40614439-40614458 | Msa0291880:CDS | 35.0% | |
| TCCAGTTAATCACACACACT+TGG | + | chr2_3:40613497-40613516 | Msa0291880:five_prime_UTR | 40.0% | |
| TCCAAGTGTGTGTGATTAAC+TGG | - | chr2_3:40613501-40613520 | None:intergenic | 40.0% | |
| !!! | CCCCTGCTAGTTGTTTTAAT+TGG | - | chr2_3:40613925-40613944 | None:intergenic | 40.0% |
| ! | ATGAATTTTCGCTGTCCCAT+AGG | - | chr2_3:40614553-40614572 | None:intergenic | 40.0% |
| TTGCAACGACACAAGTACAA+AGG | - | chr2_3:40614604-40614623 | None:intergenic | 40.0% | |
| TCCAGTTAATCACACACACT+TGG | + | chr2_3:40613497-40613516 | Msa0291880:five_prime_UTR | 40.0% | |
| TCCAAGTGTGTGTGATTAAC+TGG | - | chr2_3:40613501-40613520 | None:intergenic | 40.0% | |
| !!! | CCCCTGCTAGTTGTTTTAAT+TGG | - | chr2_3:40613925-40613944 | None:intergenic | 40.0% |
| ! | ATGAATTTTCGCTGTCCCAT+AGG | - | chr2_3:40614553-40614572 | None:intergenic | 40.0% |
| TTGCAACGACACAAGTACAA+AGG | - | chr2_3:40614604-40614623 | None:intergenic | 40.0% | |
| ACTTTGTTGGGGATCATCCT+TGG | - | chr2_3:40613899-40613918 | None:intergenic | 45.0% | |
| AAAACAACTAGCAGGGGTGA+TGG | + | chr2_3:40613928-40613947 | Msa0291880:CDS | 45.0% | |
| ! | GTGATGGTTTCTGGAAAGGA+TGG | + | chr2_3:40613944-40613963 | Msa0291880:CDS | 45.0% |
| ATTATGTTGTTGCTGTGCCC+TGG | + | chr2_3:40614406-40614425 | Msa0291880:CDS | 45.0% | |
| ACTTTGTTGGGGATCATCCT+TGG | - | chr2_3:40613899-40613918 | None:intergenic | 45.0% | |
| AAAACAACTAGCAGGGGTGA+TGG | + | chr2_3:40613928-40613947 | Msa0291880:CDS | 45.0% | |
| ! | GTGATGGTTTCTGGAAAGGA+TGG | + | chr2_3:40613944-40613963 | Msa0291880:CDS | 45.0% |
| ATTATGTTGTTGCTGTGCCC+TGG | + | chr2_3:40614406-40614425 | Msa0291880:CDS | 45.0% | |
| TTGGAGGGATAACCCATAGG+TGG | - | chr2_3:40613880-40613899 | None:intergenic | 50.0% | |
| ! | ACCTATGGGTTATCCCTCCA+AGG | + | chr2_3:40613879-40613898 | Msa0291880:CDS | 50.0% |
| TCCTTGGAGGGATAACCCAT+AGG | - | chr2_3:40613883-40613902 | None:intergenic | 50.0% | |
| TGTTGGGGATCATCCTTGGA+GGG | - | chr2_3:40613895-40613914 | None:intergenic | 50.0% | |
| TTGTTGGGGATCATCCTTGG+AGG | - | chr2_3:40613896-40613915 | None:intergenic | 50.0% | |
| ! | AGGGGTGATGGTTTCTGGAA+AGG | + | chr2_3:40613940-40613959 | Msa0291880:CDS | 50.0% |
| CGATCAGAGGCAACAATCCA+GGG | - | chr2_3:40614426-40614445 | None:intergenic | 50.0% | |
| TCGATCAGAGGCAACAATCC+AGG | - | chr2_3:40614427-40614446 | None:intergenic | 50.0% | |
| TTGGAGGGATAACCCATAGG+TGG | - | chr2_3:40613880-40613899 | None:intergenic | 50.0% | |
| ! | ACCTATGGGTTATCCCTCCA+AGG | + | chr2_3:40613879-40613898 | Msa0291880:CDS | 50.0% |
| TCCTTGGAGGGATAACCCAT+AGG | - | chr2_3:40613883-40613902 | None:intergenic | 50.0% | |
| TGTTGGGGATCATCCTTGGA+GGG | - | chr2_3:40613895-40613914 | None:intergenic | 50.0% | |
| TTGTTGGGGATCATCCTTGG+AGG | - | chr2_3:40613896-40613915 | None:intergenic | 50.0% | |
| ! | AGGGGTGATGGTTTCTGGAA+AGG | + | chr2_3:40613940-40613959 | Msa0291880:CDS | 50.0% |
| CGATCAGAGGCAACAATCCA+GGG | - | chr2_3:40614426-40614445 | None:intergenic | 50.0% | |
| TCGATCAGAGGCAACAATCC+AGG | - | chr2_3:40614427-40614446 | None:intergenic | 50.0% | |
| GGGTTGTTCTGACTCACTGC+TGG | - | chr2_3:40613841-40613860 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAACAGCTTGA+GGG | - | chr2_3:40613861-40613880 | None:intergenic | 55.0% |
| AGCTGTTCCACCACCACCTA+TGG | + | chr2_3:40613864-40613883 | Msa0291880:CDS | 55.0% | |
| GCTGTTCCACCACCACCTAT+GGG | + | chr2_3:40613865-40613884 | Msa0291880:CDS | 55.0% | |
| ! | GGATAACCCATAGGTGGTGG+TGG | - | chr2_3:40613874-40613893 | None:intergenic | 55.0% |
| GAGGGATAACCCATAGGTGG+TGG | - | chr2_3:40613877-40613896 | None:intergenic | 55.0% | |
| ! | CTAGCAGGGGTGATGGTTTC+TGG | + | chr2_3:40613935-40613954 | Msa0291880:CDS | 55.0% |
| GGGTTGTTCTGACTCACTGC+TGG | - | chr2_3:40613841-40613860 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAACAGCTTGA+GGG | - | chr2_3:40613861-40613880 | None:intergenic | 55.0% |
| AGCTGTTCCACCACCACCTA+TGG | + | chr2_3:40613864-40613883 | Msa0291880:CDS | 55.0% | |
| GCTGTTCCACCACCACCTAT+GGG | + | chr2_3:40613865-40613884 | Msa0291880:CDS | 55.0% | |
| ! | GGATAACCCATAGGTGGTGG+TGG | - | chr2_3:40613874-40613893 | None:intergenic | 55.0% |
| GAGGGATAACCCATAGGTGG+TGG | - | chr2_3:40613877-40613896 | None:intergenic | 55.0% | |
| ! | CTAGCAGGGGTGATGGTTTC+TGG | + | chr2_3:40613935-40613954 | Msa0291880:CDS | 55.0% |
| !! | GGTGGTGGTGGAACAGCTTG+AGG | - | chr2_3:40613862-40613881 | None:intergenic | 60.0% |
| !! | GGTGGTGGTGGAACAGCTTG+AGG | - | chr2_3:40613862-40613881 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 40613484 | 40614746 | 40613484 | ID=Msa0291880;Name=Msa0291880 |
| chr2_3 | mRNA | 40613484 | 40614746 | 40613484 | ID=Msa0291880-mRNA-1;Parent=Msa0291880;Name=Msa0291880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=108|0.33|0.75|0.75|0.33|0.5|4|162|122 |
| chr2_3 | exon | 40613484 | 40613625 | 40613484 | ID=Msa0291880-mRNA-1:exon:13051;Parent=Msa0291880-mRNA-1 |
| chr2_3 | exon | 40613827 | 40613965 | 40613827 | ID=Msa0291880-mRNA-1:exon:13052;Parent=Msa0291880-mRNA-1 |
| chr2_3 | exon | 40614255 | 40614262 | 40614255 | ID=Msa0291880-mRNA-1:exon:13053;Parent=Msa0291880-mRNA-1 |
| chr2_3 | exon | 40614397 | 40614746 | 40614397 | ID=Msa0291880-mRNA-1:exon:13054;Parent=Msa0291880-mRNA-1 |
| chr2_3 | five_prime_UTR | 40613484 | 40613591 | 40613484 | ID=Msa0291880-mRNA-1:five_prime_utr;Parent=Msa0291880-mRNA-1 |
| chr2_3 | CDS | 40613592 | 40613625 | 40613592 | ID=Msa0291880-mRNA-1:cds;Parent=Msa0291880-mRNA-1 |
| chr2_3 | CDS | 40613827 | 40613965 | 40613827 | ID=Msa0291880-mRNA-1:cds;Parent=Msa0291880-mRNA-1 |
| chr2_3 | CDS | 40614255 | 40614262 | 40614255 | ID=Msa0291880-mRNA-1:cds;Parent=Msa0291880-mRNA-1 |
| chr2_3 | CDS | 40614397 | 40614584 | 40614397 | ID=Msa0291880-mRNA-1:cds;Parent=Msa0291880-mRNA-1 |
| chr2_3 | three_prime_UTR | 40614585 | 40614746 | 40614585 | ID=Msa0291880-mRNA-1:three_prime_utr;Parent=Msa0291880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
