AlfalfaGEDB | Msa1277710

M. sativa cultivar zhongmu-4 / Msa1277710

KEGG: -
GO: GO:0002178 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006950 GO:0006986 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010556 GO:0012505 GO:0016020 GO:0016021 GO:0017059 GO:0019216 GO:0019222 GO:0019725 GO:0030176 GO:0031211 GO:0031224 GO:0031227 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031984 GO:0032991 GO:0033554 GO:0034248 GO:0034249 GO:0034620 GO:0035339 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045833 GO:0046890 GO:0048519 GO:0048523 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051716 GO:0055082 GO:0055088 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0080090 GO:0090153 GO:0090155 GO:0090156 GO:0098796 GO:0098827 GO:1900060 GO:1902494 GO:1905038 GO:1905961 GO:1990234 GO:2000303
PFAM: PF04061.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277710	sp\|Q921I0\|ORML1_MOUSE	42.568	148	84	1	8	154	4	151	1.35e-33	119

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277710	I3SAF0	100.000	157	0	0	1	157	1	157	6.10e-112	323

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0068000	Msa1277710	0.801249	9.843711e-49	-8.615850e-47
Msa0093420	Msa1277710	0.800712	1.267052e-48	-8.615850e-47
Msa0131450	Msa1277710	0.808974	2.378624e-50	-8.615850e-47
Msa0166750	Msa1277710	0.801104	1.053873e-48	-8.615850e-47
Msa0376820	Msa1277710	0.826032	3.387818e-54	-8.615850e-47
Msa0439890	Msa1277710	0.801372	9.287312e-49	-8.615850e-47
Msa0472130	Msa1277710	0.824258	8.898251e-54	-8.615850e-47
Msa0693210	Msa1277710	0.815614	8.446047e-52	-8.615850e-47
Msa0706500	Msa1277710	0.805375	1.376187e-49	-8.615850e-47
Msa0838370	Msa1277710	0.815914	7.241551e-52	-8.615850e-47

Showing 1 to 10 of 18 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277710	MtrunA17_Chr8g0346531	100.000	157	0	0	1	157	1	157	1.18e-115	323

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1277710	AT1G01230.1	84.713	157	24	1	157	1	157	6.02e-100	284
Msa1277710	AT5G42000.1	84.416	154	24	4	157	1	154	4.51e-99	282
Msa1277710	AT5G42000.2	85.321	109	16	4	112	1	109	1.05e-68	203

Showing 1 to 3 of 3 entries

Previous1Next

Find 55 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGATGAATTTGATTT+TGG	0.213568	8_3:-13432649	None:intergenic
AACTCCATTTGCAGATGATC+AGG	0.373395	8_3:+13434654	Msa1277710:CDS
AATGAAAGAAAGGTACTTAC+TGG	0.269940	8_3:-13438706	None:intergenic
ACAATAGTCCAAGCAATCCC+AGG	0.557415	8_3:-13432898	None:intergenic
ACAGAATGGTTTACGTATCC+TGG	0.503073	8_3:+13432805	Msa1277710:CDS
ACCGTGTTGAAGAACAGCAT+TGG	0.557220	8_3:-13438311	None:intergenic
ACGTGTACCAGAGATTATAA+CGG	0.638339	8_3:+13438662	Msa1277710:three_prime_UTR
ACTCCATTTGCAGATGATCA+GGG	0.556480	8_3:+13434655	Msa1277710:CDS
AGAAAAGGCAGAACTGTGGA+AGG	0.593266	8_3:+13438515	Msa1277710:three_prime_UTR
AGAGAAGGAAGAAAGAAGAG+AGG	0.610698	8_3:-13438461	None:intergenic

Showing 1 to 10 of 55 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAATCATCAAAGGACAAATC+AGG	-	chr8_3:13433059-13433078	None:intergenic	30.0%
TCCAAATAGGTAATCATCAA+AGG	-	chr8_3:13433069-13433088	None:intergenic	30.0%
ACTGTATGTATGAGTTTCAT+GGG	+	chr8_3:13433327-13433346	Msa1277710:intron	30.0%
CTGCATATTTGTTTAGTGTA+GGG	+	chr8_3:13433443-13433462	Msa1277710:intron	30.0%
GTGTTAATGATAAATAGGTC+AGG	+	chr8_3:13433479-13433498	Msa1277710:intron	30.0%
ACACATGTTAATACCAGTAA+TGG	+	chr8_3:13433617-13433636	Msa1277710:intron	30.0%
TTAAATGTTACCACATGTGT+CGG	+	chr8_3:13433659-13433678	Msa1277710:intron	30.0%
TTAAATGCAATCACATGTGT+CGG	+	chr8_3:13433726-13433745	Msa1277710:intron	30.0%
ATTTAGTAAAGCTGACACTT+TGG	-	chr8_3:13433789-13433808	None:intergenic	30.0%
ACTAAATCCTAATGTGCTAT+TGG	+	chr8_3:13433802-13433821	Msa1277710:intron	30.0%

Showing 1 to 10 of 407 entries

Previous1 2 3 4 5…41Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	13432441	13438767	13432441	ID=Msa1277710;Name=Msa1277710
chr8_3	mRNA	13432441	13438767	13432441	ID=Msa1277710-mRNA-1;Parent=Msa1277710;Name=Msa1277710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=313\|1\|1\|1\|1\|1\|3\|355\|157
chr8_3	exon	13432441	13432939	13432441	ID=Msa1277710-mRNA-1:exon:5277;Parent=Msa1277710-mRNA-1
chr8_3	exon	13434622	13434770	13434622	ID=Msa1277710-mRNA-1:exon:5278;Parent=Msa1277710-mRNA-1
chr8_3	exon	13438274	13438767	13438274	ID=Msa1277710-mRNA-1:exon:5279;Parent=Msa1277710-mRNA-1
chr8_3	five_prime_UTR	13432441	13432753	13432441	ID=Msa1277710-mRNA-1:five_prime_utr;Parent=Msa1277710-mRNA-1
chr8_3	CDS	13432754	13432939	13432754	ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3	CDS	13434622	13434770	13434622	ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3	CDS	13438274	13438412	13438274	ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3	three_prime_UTR	13438413	13438767	13438413	ID=Msa1277710-mRNA-1:three_prime_utr;Parent=Msa1277710-mRNA-1

Gene Sequence

>Msa1277710

ATGGCTAATCTGTATGTCAAAGCTGTGCCACCTGCGGATCTGAACAGGAACACAGAATGGTTTACGTATCCTGGTGTTTGGACAACATATATTCTCATTCTCTTCTTTTCATGGATCATGGTTTTGTCTGTCTTTGGTTGTTCTCCTGGGATTGCTTGGACTATTGTTAATCTCGCTCATTTTCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGATGATCAGGGGATCTACAATAGATTGACATGGTGGGAGCAGGTCGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTTTGACAGTTGTTCCTTTGGTTCTGTACTTGATAGCCTCACACACAACTGACTATGAGCATCCAATGCTGTTCTTCAACACGGTTGCCGTGATTGTGCTAGTTGTTGCGAAGTTCCCCAACATGCACAAGGTTAGGATATTCGGAATCAACGCTGATAAGTGA

Protein sequence

>Msa1277710

MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWIMVLSVFGCSPGIAWTIVNLAHFLVTYHFFHWKKGTPFADDQGIYNRLTWWEQVDNGKQLTRNRKFLTVVPLVLYLIASHTTDYEHPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK*