AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1277710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277710 MtrunA17_Chr8g0346531 100.000 157 0 0 1 157 1 157 1.18e-115 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1277710 AT1G01230.1 84.713 157 24 0 1 157 1 157 6.02e-100 284
Msa1277710 AT5G42000.1 84.416 154 24 0 4 157 1 154 4.51e-99 282
Msa1277710 AT5G42000.2 85.321 109 16 0 4 112 1 109 1.05e-68 203

Find 55 sgRNAs with CRISPR-Local

Find 407 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCAAATTATGCAAAATT+TGG 0.095930 8_3:-13432735 None:intergenic
CTTTCTTCCTTCTCTTGTTC+TGG 0.172031 8_3:+13438469 Msa1277710:three_prime_UTR
CTTCTAAGCTTCTTCTTCTA+AGG 0.206195 8_3:+13438585 Msa1277710:three_prime_UTR
AAACTTGATGAATTTGATTT+TGG 0.213568 8_3:-13432649 None:intergenic
ATTGAATCAAAATCAAAATA+AGG 0.230522 8_3:+13432571 Msa1277710:five_prime_UTR
AATGAAAGAAAGGTACTTAC+TGG 0.269940 8_3:-13438706 None:intergenic
TCTGTCTTTGGTTGTTCTCC+TGG 0.279321 8_3:+13432880 Msa1277710:CDS
ATCCTAACCTTGTGCATGTT+GGG 0.323712 8_3:-13438365 None:intergenic
TATTCAACGTTTCAATCAAA+AGG 0.343955 8_3:+13432697 Msa1277710:five_prime_UTR
ATGCACAAGGTTAGGATATT+CGG 0.354060 8_3:+13438371 Msa1277710:CDS
GCAAATGATGATTCTTGTAT+AGG 0.362359 8_3:-13438745 None:intergenic
GTTGTTCTCCTGGGATTGCT+TGG 0.366309 8_3:+13432890 Msa1277710:CDS
AACTCCATTTGCAGATGATC+AGG 0.373395 8_3:+13434654 Msa1277710:CDS
GGTTTACGTATCCTGGTGTT+TGG 0.387034 8_3:+13432812 Msa1277710:CDS
CTGTCTTTGGTTGTTCTCCT+GGG 0.396410 8_3:+13432881 Msa1277710:CDS
TGCCACCTGCGGATCTGAAC+AGG 0.406149 8_3:+13432779 Msa1277710:CDS
GAAAGCAGCTCACTCGTAAC+AGG 0.409598 8_3:+13434719 Msa1277710:CDS
CTAAGGCATTAATGAAAGAA+AGG 0.412123 8_3:-13438716 None:intergenic
TTGAATCAAAATCAAAATAA+GGG 0.429578 8_3:+13432572 Msa1277710:five_prime_UTR
TGAGCTAAAATTGATTTGCT+TGG 0.434788 8_3:-13432475 None:intergenic
TTTGTTTATCCATGAAACTA+TGG 0.436190 8_3:+13438420 Msa1277710:three_prime_UTR
TACTAACAACCATAGTTTCA+TGG 0.442901 8_3:-13438429 None:intergenic
TAGCAACCTTTGTATAGAAA+AGG 0.455565 8_3:+13438500 Msa1277710:three_prime_UTR
TCCCCAACATGCACAAGGTT+AGG 0.468126 8_3:+13438363 Msa1277710:CDS
ATTCAACGTTTCAATCAAAA+GGG 0.484393 8_3:+13432698 Msa1277710:five_prime_UTR
GTGTTCCTGTTCAGATCCGC+AGG 0.489888 8_3:-13432784 None:intergenic
GAAAGCACCGTTATAATCTC+TGG 0.493301 8_3:-13438669 None:intergenic
ACAGAATGGTTTACGTATCC+TGG 0.503073 8_3:+13432805 Msa1277710:CDS
TATCCTAACCTTGTGCATGT+TGG 0.507851 8_3:-13438366 None:intergenic
ATCCCCTGATCATCTGCAAA+TGG 0.508493 8_3:-13434658 None:intergenic
TAGATTGACATGGTGGGAGC+AGG 0.523259 8_3:+13434687 Msa1277710:CDS
ATGGAGTTCCTTTCTTCCAG+TGG 0.534161 8_3:-13434639 None:intergenic
ATCTGAACAGGAACACAGAA+TGG 0.543897 8_3:+13432791 Msa1277710:CDS
ACTCCATTTGCAGATGATCA+GGG 0.556480 8_3:+13434655 Msa1277710:CDS
ACCGTGTTGAAGAACAGCAT+TGG 0.557220 8_3:-13438311 None:intergenic
ACAATAGTCCAAGCAATCCC+AGG 0.557415 8_3:-13432898 None:intergenic
CGCAACAACTAGCACAATCA+CGG 0.570087 8_3:-13438336 None:intergenic
TCCTAACCTTGTGCATGTTG+GGG 0.573459 8_3:-13438364 None:intergenic
TGGTGGGAGCAGGTCGACAA+TGG 0.574609 8_3:+13434697 Msa1277710:CDS
ATATATGTTGTCCAAACACC+AGG 0.585932 8_3:-13432823 None:intergenic
AGAAAAGGCAGAACTGTGGA+AGG 0.593266 8_3:+13438515 Msa1277710:three_prime_UTR
CTCATAGTCAGTTGTGTGTG+AGG 0.593542 8_3:-13438285 None:intergenic
AGGAGAACTTACAGAACCAA+AGG 0.601770 8_3:-13434760 None:intergenic
AGAGAAGGAAGAAAGAAGAG+AGG 0.610698 8_3:-13438461 None:intergenic
TCCAATGCTGTTCTTCAACA+CGG 0.613434 8_3:+13438310 Msa1277710:CDS
CTCCATTTGCAGATGATCAG+GGG 0.621400 8_3:+13434656 Msa1277710:CDS
TCTACAATAGATTGACATGG+TGG 0.624727 8_3:+13434680 Msa1277710:CDS
GAAGTTCCCCAACATGCACA+AGG 0.633964 8_3:+13438358 Msa1277710:CDS
ACGTGTACCAGAGATTATAA+CGG 0.638339 8_3:+13438662 Msa1277710:three_prime_UTR
TGTGTCTGTGAAAATGTGAA+AGG 0.645199 8_3:-13432526 None:intergenic
CTACAATAGATTGACATGGT+GGG 0.646152 8_3:+13434681 Msa1277710:CDS
TTCCTGTTCAGATCCGCAGG+TGG 0.663476 8_3:-13432781 None:intergenic
TGTCAAAGCTGTGCCACCTG+CGG 0.675301 8_3:+13432768 Msa1277710:CDS
GTATAGAAAAGGCAGAACTG+TGG 0.687604 8_3:+13438511 Msa1277710:three_prime_UTR
GGATCTACAATAGATTGACA+TGG 0.711938 8_3:+13434677 Msa1277710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAAAAAAACAAAATAAA+AGG - chr8_3:13432967-13432986 None:intergenic 10.0%
!!! CAGTTTTTATTTTATTTTTT+AGG + chr8_3:13434836-13434855 Msa1277710:intron 10.0%
!! ATTGAATCAAAATCAAAATA+AGG + chr8_3:13432571-13432590 Msa1277710:five_prime_UTR 15.0%
!! TTGAATCAAAATCAAAATAA+GGG + chr8_3:13432572-13432591 Msa1277710:five_prime_UTR 15.0%
!! AAAACAAAATAAAAGGAAAA+GGG - chr8_3:13432960-13432979 None:intergenic 15.0%
!! AAAAACAAAATAAAAGGAAA+AGG - chr8_3:13432961-13432980 None:intergenic 15.0%
!! ATTTAGAAAAGATAAAATAG+AGG + chr8_3:13433515-13433534 Msa1277710:intron 15.0%
!! TAAAATAAAAACTGTGATAT+CGG - chr8_3:13434830-13434849 None:intergenic 15.0%
!! TATTATAGCTATAATATAGT+TGG + chr8_3:13435185-13435204 Msa1277710:intron 15.0%
!!! TTTTTTCTAGCAAATATTTA+AGG - chr8_3:13435308-13435327 None:intergenic 15.0%
!! AAAATTTAAGCAGATAAAAA+TGG + chr8_3:13435367-13435386 Msa1277710:intron 15.0%
!!! TTTGTTCATAGATATTTTAA+AGG + chr8_3:13436245-13436264 Msa1277710:intron 15.0%
!!! TTGTTCATAGATATTTTAAA+GGG + chr8_3:13436246-13436265 Msa1277710:intron 15.0%
!!! CATTTAAAACATTTAGTATT+AGG - chr8_3:13436302-13436321 None:intergenic 15.0%
!!! CTAATACTAAATGTTTTAAA+TGG + chr8_3:13436300-13436319 Msa1277710:intron 15.0%
!! ATTGTAACTAAAAATGATAT+GGG + chr8_3:13436327-13436346 Msa1277710:intron 15.0%
!! AAATAATCATTATAAAAACC+AGG - chr8_3:13436375-13436394 None:intergenic 15.0%
!! TTATAATGATTATTTATCGA+AGG + chr8_3:13436380-13436399 Msa1277710:intron 15.0%
!! AAGAATTATAACAATTGATT+CGG + chr8_3:13436823-13436842 Msa1277710:intron 15.0%
!!! AAAATTTATAATTTGCACTT+CGG + chr8_3:13437023-13437042 Msa1277710:intron 15.0%
!! AAAGTAACATATATAATGTA+CGG + chr8_3:13437732-13437751 Msa1277710:intron 15.0%
!!! GTAAATTTTGGTATTAATAA+TGG - chr8_3:13438117-13438136 None:intergenic 15.0%
!!! AAACTTGATGAATTTGATTT+TGG - chr8_3:13432652-13432671 None:intergenic 20.0%
!! AAACTACAAAATTTCCAAAT+AGG - chr8_3:13433082-13433101 None:intergenic 20.0%
!!! TTTGGAAATTTTGTAGTTTA+AGG + chr8_3:13433083-13433102 Msa1277710:intron 20.0%
!! ACCAAAAATAATTTGAGAAA+AGG + chr8_3:13433206-13433225 Msa1277710:intron 20.0%
!!! TCCTTTTCTCAAATTATTTT+TGG - chr8_3:13433210-13433229 None:intergenic 20.0%
!! TATTTATTGAGTCATGATTT+AGG + chr8_3:13433420-13433439 Msa1277710:intron 20.0%
!! ATCTTGTGTTAATGATAAAT+AGG + chr8_3:13433474-13433493 Msa1277710:intron 20.0%
!!! GTATTAGTTTAAGAAAATGA+AGG + chr8_3:13433700-13433719 Msa1277710:intron 20.0%
!! TCTATTAGAAATAAATGATC+CGG - chr8_3:13436219-13436238 None:intergenic 20.0%
!!! TGTTCATAGATATTTTAAAG+GGG + chr8_3:13436247-13436266 Msa1277710:intron 20.0%
!! GATTGTAACTAAAAATGATA+TGG + chr8_3:13436326-13436345 Msa1277710:intron 20.0%
!! TTGTAACTAAAAATGATATG+GGG + chr8_3:13436328-13436347 Msa1277710:intron 20.0%
!! GAAAAAGTCAAATCAAAATT+TGG + chr8_3:13436579-13436598 Msa1277710:intron 20.0%
!! TTAGTTATCTACATTATTTG+TGG + chr8_3:13436640-13436659 Msa1277710:intron 20.0%
!! TTGATTGAAGAAATATTGTT+AGG + chr8_3:13436749-13436768 Msa1277710:intron 20.0%
!!! ATCATTTATAATTTGCACTT+CGG + chr8_3:13436911-13436930 Msa1277710:intron 20.0%
!!! TTTATTTTTGTTTCTCCTTT+GGG - chr8_3:13437005-13437024 None:intergenic 20.0%
!!! TTTTATTTTTGTTTCTCCTT+TGG - chr8_3:13437006-13437025 None:intergenic 20.0%
!!! TTTTTTTTTGTTTCTCCTTT+GGG - chr8_3:13437117-13437136 None:intergenic 20.0%
!!! TTTTTTTTTTGTTTCTCCTT+TGG - chr8_3:13437118-13437137 None:intergenic 20.0%
!!! GGTATTTAATTTATTTTGGT+AGG + chr8_3:13437328-13437347 Msa1277710:intron 20.0%
!!! GATTTTTTCTTTTCTTTTCT+TGG + chr8_3:13437383-13437402 Msa1277710:intron 20.0%
!!! ATCTAGATTTAAGTTATTCT+TGG - chr8_3:13437888-13437907 None:intergenic 20.0%
!!! ATTTTGGTATTAATAATGGT+TGG - chr8_3:13438113-13438132 None:intergenic 20.0%
!!! TGTTTAAGAGTTGTAAATTT+TGG - chr8_3:13438129-13438148 None:intergenic 20.0%
!!! TAAATAAAGAATGCTTTGTT+CGG + chr8_3:13438150-13438169 Msa1277710:intron 20.0%
!! TTACTAAATGACTTATTTGA+AGG + chr8_3:13438212-13438231 Msa1277710:intron 20.0%
!! AAAGAAAGAAAAAAAATAGC+TGG - chr8_3:13438564-13438583 None:intergenic 20.0%
!! AAAATAAGGGTTACGTTTTT+GGG + chr8_3:13432585-13432604 Msa1277710:five_prime_UTR 25.0%
!!! TTGATGAATTTGATTTTGGT+GGG - chr8_3:13432648-13432667 None:intergenic 25.0%
! TATTCAACGTTTCAATCAAA+AGG + chr8_3:13432697-13432716 Msa1277710:five_prime_UTR 25.0%
! ATTCAACGTTTCAATCAAAA+GGG + chr8_3:13432698-13432717 Msa1277710:five_prime_UTR 25.0%
! CCATCAAATTATGCAAAATT+TGG - chr8_3:13432738-13432757 None:intergenic 25.0%
!! CCAAATTTTGCATAATTTGA+TGG + chr8_3:13432735-13432754 Msa1277710:exon 25.0%
!!! TTTGAGTTATGTTGTTTTGA+TGG + chr8_3:13433139-13433158 Msa1277710:intron 25.0%
! TAATTGTGATGTACATGATA+AGG + chr8_3:13433386-13433405 Msa1277710:intron 25.0%
! GGAAGACATATATAAATTAG+AGG + chr8_3:13433549-13433568 Msa1277710:intron 25.0%
!! TAAATTAGAGGTATGCTATT+AGG + chr8_3:13433561-13433580 Msa1277710:intron 25.0%
!! TCATTTTCTTAAACCATTAC+TGG - chr8_3:13433633-13433652 None:intergenic 25.0%
! TTGATATGATTATGATTTCG+CGG + chr8_3:13434320-13434339 Msa1277710:intron 25.0%
!!! TTCATCTTCCTTTGATTTTT+TGG + chr8_3:13434376-13434395 Msa1277710:intron 25.0%
!!! TCATCTTCCTTTGATTTTTT+GGG + chr8_3:13434377-13434396 Msa1277710:intron 25.0%
! CATAGTCAAACATAATAACA+AGG + chr8_3:13434423-13434442 Msa1277710:intron 25.0%
!! TTTTATAAAAGCTACTTGAC+TGG + chr8_3:13434497-13434516 Msa1277710:intron 25.0%
! TTTATAAAAGCTACTTGACT+GGG + chr8_3:13434498-13434517 Msa1277710:intron 25.0%
!! GTTAATTTGATCTCTTTACA+TGG + chr8_3:13434572-13434591 Msa1277710:intron 25.0%
! ATATAAACACTAGCAGTAAT+TGG + chr8_3:13434871-13434890 Msa1277710:intron 25.0%
!! AAATAAATGTCACTTCTATG+AGG + chr8_3:13435022-13435041 Msa1277710:intron 25.0%
! TACTCACAAGTCAATTAAAT+TGG - chr8_3:13435068-13435087 None:intergenic 25.0%
! ATAGCTATAATATAGTTGGT+AGG + chr8_3:13435189-13435208 Msa1277710:intron 25.0%
!!! TATAATATAGTTGGTAGGTT+GGG + chr8_3:13435194-13435213 Msa1277710:intron 25.0%
!!! CAGAAGTTATGTTACTTTAA+AGG + chr8_3:13435243-13435262 Msa1277710:intron 25.0%
! TTTAAAGGTTTGTATCTGTA+TGG + chr8_3:13435258-13435277 Msa1277710:intron 25.0%
! CTATGTATGATATAAATACC+AGG - chr8_3:13435431-13435450 None:intergenic 25.0%
! TGTATTGAACCAAACTAAAT+CGG - chr8_3:13435968-13435987 None:intergenic 25.0%
!! AATTTTATCACTTATTCCCA+AGG + chr8_3:13436154-13436173 Msa1277710:intron 25.0%
!!! GTTCATAGATATTTTAAAGG+GGG + chr8_3:13436248-13436267 Msa1277710:intron 25.0%
! GAAAGTAATAAATGATAACC+TGG + chr8_3:13436354-13436373 Msa1277710:intron 25.0%
! AAAGTCAAATCAAAATTTGG+AGG + chr8_3:13436582-13436601 Msa1277710:intron 25.0%
!!! TCATAACCAGAGTTTTTTAA+GGG - chr8_3:13436696-13436715 None:intergenic 25.0%
!! CTTCAATCAAAACAATTTTG+CGG - chr8_3:13436739-13436758 None:intergenic 25.0%
!! CTTTTGTAAACTTTCTGATA+AGG + chr8_3:13437180-13437199 Msa1277710:intron 25.0%
!!! CGTCGGTATTTAATTTATTT+TGG + chr8_3:13437324-13437343 Msa1277710:intron 25.0%
! AAGAAAAGAAAAAATCATGC+TGG - chr8_3:13437379-13437398 None:intergenic 25.0%
! TAAAAACATGCAATACGTTA+TGG - chr8_3:13437450-13437469 None:intergenic 25.0%
! TTGGATATTGAACTGTAAAA+AGG + chr8_3:13437622-13437641 Msa1277710:intron 25.0%
! GTAAATAGTCAAAACATGTA+TGG + chr8_3:13437644-13437663 Msa1277710:intron 25.0%
!!! TCTATCATTTTTTCCTACAT+GGG - chr8_3:13437764-13437783 None:intergenic 25.0%
!!! ATCTATCATTTTTTCCTACA+TGG - chr8_3:13437765-13437784 None:intergenic 25.0%
! AAATGATAGATTGTTGTCTA+AGG + chr8_3:13437774-13437793 Msa1277710:intron 25.0%
! AAATAGACTATTACAATCCT+TGG + chr8_3:13437814-13437833 Msa1277710:intron 25.0%
!! AGTTTAAAAGTCTAGTTTCT+TGG - chr8_3:13438040-13438059 None:intergenic 25.0%
!! AATATTTTCTTGTCATTGAC+AGG + chr8_3:13438252-13438271 Msa1277710:intron 25.0%
! TTTGTTTATCCATGAAACTA+TGG + chr8_3:13438420-13438439 Msa1277710:three_prime_UTR 25.0%
!! TGAGCTAAAATTGATTTGCT+TGG - chr8_3:13432478-13432497 None:intergenic 30.0%
! CAAAATAAGGGTTACGTTTT+TGG + chr8_3:13432584-13432603 Msa1277710:five_prime_UTR 30.0%
!!! ATTTTGGTGGGTTTGATTTA+GGG - chr8_3:13432636-13432655 None:intergenic 30.0%
!! CTTGATGAATTTGATTTTGG+TGG - chr8_3:13432649-13432668 None:intergenic 30.0%
! TTCTCATTCTCTTCTTTTCA+TGG + chr8_3:13432845-13432864 Msa1277710:CDS 30.0%
TAATCATCAAAGGACAAATC+AGG - chr8_3:13433059-13433078 None:intergenic 30.0%
! TCCTTTGATGATTACCTATT+TGG + chr8_3:13433065-13433084 Msa1277710:intron 30.0%
TCCAAATAGGTAATCATCAA+AGG - chr8_3:13433069-13433088 None:intergenic 30.0%
!!! TATTTTTGGTATCGACATGT+TGG - chr8_3:13433196-13433215 None:intergenic 30.0%
ACTGTATGTATGAGTTTCAT+GGG + chr8_3:13433327-13433346 Msa1277710:intron 30.0%
CTGCATATTTGTTTAGTGTA+GGG + chr8_3:13433443-13433462 Msa1277710:intron 30.0%
GTGTTAATGATAAATAGGTC+AGG + chr8_3:13433479-13433498 Msa1277710:intron 30.0%
ACACATGTTAATACCAGTAA+TGG + chr8_3:13433617-13433636 Msa1277710:intron 30.0%
TTAAATGTTACCACATGTGT+CGG + chr8_3:13433659-13433678 Msa1277710:intron 30.0%
TTAAATGCAATCACATGTGT+CGG + chr8_3:13433726-13433745 Msa1277710:intron 30.0%
ATTTAGTAAAGCTGACACTT+TGG - chr8_3:13433789-13433808 None:intergenic 30.0%
ACTAAATCCTAATGTGCTAT+TGG + chr8_3:13433802-13433821 Msa1277710:intron 30.0%
TTTACTTCCAATAGCACATT+AGG - chr8_3:13433812-13433831 None:intergenic 30.0%
AGTTAACGTAAACTAGCAAT+TGG - chr8_3:13433884-13433903 None:intergenic 30.0%
TAGTTTACGTTAACTGCAAT+TGG + chr8_3:13433889-13433908 Msa1277710:intron 30.0%
TAGAACATTGCAAAGATGAT+GGG - chr8_3:13434173-13434192 None:intergenic 30.0%
TTAGAACATTGCAAAGATGA+TGG - chr8_3:13434174-13434193 None:intergenic 30.0%
! CTTTAGAAGTACACTAGTTT+AGG + chr8_3:13434223-13434242 Msa1277710:intron 30.0%
!! TTTAGGAGCATTATACTTTG+TGG + chr8_3:13434240-13434259 Msa1277710:intron 30.0%
TAAACTACTCCTAGTTAACA+AGG - chr8_3:13434271-13434290 None:intergenic 30.0%
TCATAATCATATCAAGTACC+TGG - chr8_3:13434315-13434334 None:intergenic 30.0%
AATGCTACATGAGCTAAAAT+GGG - chr8_3:13434452-13434471 None:intergenic 30.0%
AAATGCTACATGAGCTAAAA+TGG - chr8_3:13434453-13434472 None:intergenic 30.0%
!!! TAACATATCACTTTTTCCAC+TGG + chr8_3:13434623-13434642 Msa1277710:CDS 30.0%
! TTTTCGTCTGTATCTTAATG+TGG + chr8_3:13434986-13435005 Msa1277710:intron 30.0%
TTTCTGTCTCTTCTTATATG+TGG + chr8_3:13435106-13435125 Msa1277710:intron 30.0%
TTCTGTCTCTTCTTATATGT+GGG + chr8_3:13435107-13435126 Msa1277710:intron 30.0%
! AATTCTTTTCGCAACTAGAA+GGG - chr8_3:13435156-13435175 None:intergenic 30.0%
! AAATTCTTTTCGCAACTAGA+AGG - chr8_3:13435157-13435176 None:intergenic 30.0%
!! CTATAATATAGTTGGTAGGT+TGG + chr8_3:13435193-13435212 Msa1277710:intron 30.0%
TTTGATTGTTAGCGAAAGAA+AGG + chr8_3:13435333-13435352 Msa1277710:intron 30.0%
TTGATTGTTAGCGAAAGAAA+GGG + chr8_3:13435334-13435353 Msa1277710:intron 30.0%
GATATATAACCAGCATGATT+GGG - chr8_3:13435409-13435428 None:intergenic 30.0%
!!! GAATGCAGTGTTTTAAAAAC+CGG + chr8_3:13435465-13435484 Msa1277710:intron 30.0%
!!! AATGCAGTGTTTTAAAAACC+GGG + chr8_3:13435466-13435485 Msa1277710:intron 30.0%
ATTTCATTGTTGCACACTAT+TGG - chr8_3:13435687-13435706 None:intergenic 30.0%
ACGGCAAGTATTAATTAGAT+TGG - chr8_3:13435886-13435905 None:intergenic 30.0%
!!! TCAAGCAGTGTTTTTAAAAC+CGG - chr8_3:13436108-13436127 None:intergenic 30.0%
TTTCTTGCATAATAGTTGCA+AGG - chr8_3:13436195-13436214 None:intergenic 30.0%
AAGGGGGATTCTAAATTATT+TGG + chr8_3:13436264-13436283 Msa1277710:intron 30.0%
AGGGGGATTCTAAATTATTT+GGG + chr8_3:13436265-13436284 Msa1277710:intron 30.0%
ATGTTTGTCATTATGACCAA+AGG + chr8_3:13436444-13436463 Msa1277710:intron 30.0%
TAGATTCCCTTAAAAAACTC+TGG + chr8_3:13436687-13436706 Msa1277710:intron 30.0%
!!! CTCATAACCAGAGTTTTTTA+AGG - chr8_3:13436697-13436716 None:intergenic 30.0%
CTTAAAAAACTCTGGTTATG+AGG + chr8_3:13436695-13436714 Msa1277710:intron 30.0%
TTGTAAACTTTCTGATAAGG+TGG + chr8_3:13437183-13437202 Msa1277710:intron 30.0%
TGTAAACTTTCTGATAAGGT+GGG + chr8_3:13437184-13437203 Msa1277710:intron 30.0%
! ATTAGACTTGTGTCATTCTA+TGG + chr8_3:13437596-13437615 Msa1277710:intron 30.0%
! TTGTGTCATTCTATGGTATT+TGG + chr8_3:13437603-13437622 Msa1277710:intron 30.0%
TAGTCAAAACATGTATGGTA+AGG + chr8_3:13437649-13437668 Msa1277710:intron 30.0%
! ATGTAGCTTTTCTATCTACT+TGG + chr8_3:13437960-13437979 Msa1277710:intron 30.0%
! TGTAGCTTTTCTATCTACTT+GGG + chr8_3:13437961-13437980 Msa1277710:intron 30.0%
AGTGAGCTTACAAAAATCTT+TGG + chr8_3:13438010-13438029 Msa1277710:intron 30.0%
TACTAACAACCATAGTTTCA+TGG - chr8_3:13438432-13438451 None:intergenic 30.0%
TAGCAACCTTTGTATAGAAA+AGG + chr8_3:13438500-13438519 Msa1277710:three_prime_UTR 30.0%
!! AATGAAAGAAAGGTACTTAC+TGG - chr8_3:13438709-13438728 None:intergenic 30.0%
! CTAAGGCATTAATGAAAGAA+AGG - chr8_3:13438719-13438738 None:intergenic 30.0%
! TCTTGTATAGGAGTTTTCTA+AGG - chr8_3:13438736-13438755 None:intergenic 30.0%
GCAAATGATGATTCTTGTAT+AGG - chr8_3:13438748-13438767 None:intergenic 30.0%
TGTGTCTGTGAAAATGTGAA+AGG - chr8_3:13432529-13432548 None:intergenic 35.0%
!!! GATTTTGGTGGGTTTGATTT+AGG - chr8_3:13432637-13432656 None:intergenic 35.0%
ATATATGTTGTCCAAACACC+AGG - chr8_3:13432826-13432845 None:intergenic 35.0%
! TCTCTTCTTTTCATGGATCA+TGG + chr8_3:13432852-13432871 Msa1277710:CDS 35.0%
!!! ATCATGGTTTTGTCTGTCTT+TGG + chr8_3:13432868-13432887 Msa1277710:CDS 35.0%
AATGTTCGTACTATGAAGCA+CGG + chr8_3:13433167-13433186 Msa1277710:intron 35.0%
AGTAATCATATGTGTCGTGT+TGG + chr8_3:13433240-13433259 Msa1277710:intron 35.0%
GACTGTATGTATGAGTTTCA+TGG + chr8_3:13433326-13433345 Msa1277710:intron 35.0%
CTGTATGTATGAGTTTCATG+GGG + chr8_3:13433328-13433347 Msa1277710:intron 35.0%
GCTGCATATTTGTTTAGTGT+AGG + chr8_3:13433442-13433461 Msa1277710:intron 35.0%
AAAATAGAGGACAGAGATCT+TGG + chr8_3:13433528-13433547 Msa1277710:intron 35.0%
!! TAAAGCACTGCCAAATACAT+CGG + chr8_3:13433588-13433607 Msa1277710:intron 35.0%
TACTGGTATTAACATGTGTC+AGG - chr8_3:13433616-13433635 None:intergenic 35.0%
! TCACTGTTAGAGTATTTGCT+TGG + chr8_3:13433991-13434010 Msa1277710:intron 35.0%
CTTGTCAATTGTTGTGATGA+GGG + chr8_3:13434042-13434061 Msa1277710:intron 35.0%
!! GTACTTCTAAAGTCAAACAG+AGG - chr8_3:13434215-13434234 None:intergenic 35.0%
!!! CTTCCTTTGATTTTTTGGGT+AGG + chr8_3:13434381-13434400 Msa1277710:intron 35.0%
CTACCTACCCAAAAAATCAA+AGG - chr8_3:13434387-13434406 None:intergenic 35.0%
TTGATTATGTTGTGTGCTTC+AGG + chr8_3:13434600-13434619 Msa1277710:intron 35.0%
GGATCTACAATAGATTGACA+TGG + chr8_3:13434677-13434696 Msa1277710:CDS 35.0%
TCTACAATAGATTGACATGG+TGG + chr8_3:13434680-13434699 Msa1277710:CDS 35.0%
CTACAATAGATTGACATGGT+GGG + chr8_3:13434681-13434700 Msa1277710:CDS 35.0%
! GTTTTTGACAGTTGTTCCTT+TGG + chr8_3:13434744-13434763 Msa1277710:CDS 35.0%
AATGCAGGTATGCAAGTTAA+AGG - chr8_3:13434783-13434802 None:intergenic 35.0%
!! TTTAACTTGCATACCTGCAT+TGG + chr8_3:13434782-13434801 Msa1277710:intron 35.0%
!!! ATACCTGCATTGGTTTTTAG+TGG + chr8_3:13434792-13434811 Msa1277710:intron 35.0%
!!! GTTTTTAGTGGTGTTTGTTC+CGG + chr8_3:13434804-13434823 Msa1277710:intron 35.0%
ATAAAAACTGTGATATCGGC+CGG - chr8_3:13434826-13434845 None:intergenic 35.0%
TCTTATATGTGGGCATGATA+TGG + chr8_3:13435117-13435136 Msa1277710:intron 35.0%
ACTAGAAGGGAATAACACAT+AGG - chr8_3:13435143-13435162 None:intergenic 35.0%
GGATATATAACCAGCATGAT+TGG - chr8_3:13435410-13435429 None:intergenic 35.0%
! ATCATGCTGGTTATATATCC+TGG + chr8_3:13435410-13435429 Msa1277710:intron 35.0%
AAAACACTGCATTCAATCTC+TGG - chr8_3:13435459-13435478 None:intergenic 35.0%
ATATAGTATAGTGACCTGTC+CGG - chr8_3:13435524-13435543 None:intergenic 35.0%
ATTCCATTGTTGCACACTAT+TGG - chr8_3:13435777-13435796 None:intergenic 35.0%
!!! CATGTTTTAACCAGATGACT+TGG - chr8_3:13436020-13436039 None:intergenic 35.0%
AGTCATCTGGTTAAAACATG+CGG + chr8_3:13436020-13436039 Msa1277710:intron 35.0%
! TGCTTGAATGACATTTGTTG+AGG + chr8_3:13436121-13436140 Msa1277710:intron 35.0%
GTTATACACTTGCATTCCTT+GGG - chr8_3:13436173-13436192 None:intergenic 35.0%
CAACTATTATGCAAGAAAGC+CGG + chr8_3:13436197-13436216 Msa1277710:intron 35.0%
CAAAATTTGCGACTGCATTT+GGG - chr8_3:13436523-13436542 None:intergenic 35.0%
TCAAAATTTGCGACTGCATT+TGG - chr8_3:13436524-13436543 None:intergenic 35.0%
! ATGCAGTCGCAAATTTTGAA+TGG + chr8_3:13436525-13436544 Msa1277710:intron 35.0%
TTGGAGGTTTCTATTCTTCA+TGG + chr8_3:13436598-13436617 Msa1277710:intron 35.0%
TTTCTATTCTTCATGGTGTC+TGG + chr8_3:13436605-13436624 Msa1277710:intron 35.0%
TTCTATTCTTCATGGTGTCT+GGG + chr8_3:13436606-13436625 Msa1277710:intron 35.0%
!! ACAATTGATTCGGAAATCAG+CGG + chr8_3:13436833-13436852 Msa1277710:intron 35.0%
ATTTGCACTTCGGTCTTTAA+AGG + chr8_3:13436921-13436940 Msa1277710:intron 35.0%
TTTGCACTTCGGTCTTTAAA+GGG + chr8_3:13436922-13436941 Msa1277710:intron 35.0%
ATTTGCACTTCGGTCTTTAA+AGG + chr8_3:13436921-13436940 Msa1277710:intron 35.0%
TTTGCACTTCGGTCTTTAAA+GGG + chr8_3:13436922-13436941 Msa1277710:intron 35.0%
ACAAGTTAAAGCAAATCCCT+TGG + chr8_3:13437146-13437165 Msa1277710:intron 35.0%
AAAAGAACCTGAATCTCCAA+GGG - chr8_3:13437165-13437184 None:intergenic 35.0%
! TAGATAGTTTTCTGCAGTGA+GGG + chr8_3:13437281-13437300 Msa1277710:intron 35.0%
!! TAATTAATCTGAGGCATCGT+CGG + chr8_3:13437307-13437326 Msa1277710:intron 35.0%
!!! ACGTATTGCATGTTTTTAGC+TGG + chr8_3:13437452-13437471 Msa1277710:intron 35.0%
!! CCTCTATTGACTCTCTAAAT+AGG - chr8_3:13437487-13437506 None:intergenic 35.0%
CCTATTTAGAGAGTCAATAG+AGG + chr8_3:13437484-13437503 Msa1277710:intron 35.0%
ACGTTAAAGCTTGCAACTTA+TGG - chr8_3:13437530-13437549 None:intergenic 35.0%
CTTTAACGTACCATACTAGA+TGG + chr8_3:13437541-13437560 Msa1277710:intron 35.0%
AATTTCTGCACCATCTAGTA+TGG - chr8_3:13437554-13437573 None:intergenic 35.0%
TGATAGATTGTTGTCTAAGG+TGG + chr8_3:13437777-13437796 Msa1277710:intron 35.0%
GTAATAGTCTATTTCCCACA+TGG - chr8_3:13437808-13437827 None:intergenic 35.0%
ACAATCCTTGGTAAGAAGAT+TGG + chr8_3:13437826-13437845 Msa1277710:intron 35.0%
TAAATCTAGATATGCTGCTG+AGG + chr8_3:13437897-13437916 Msa1277710:intron 35.0%
! CTTTTCTATCTACTTGGGTT+GGG + chr8_3:13437966-13437985 Msa1277710:intron 35.0%
ATGCACAAGGTTAGGATATT+CGG + chr8_3:13438371-13438390 Msa1277710:CDS 35.0%
!!! CTTTTTTCCAGAACAAGAGA+AGG - chr8_3:13438479-13438498 None:intergenic 35.0%
! GTTCTGCCTTTTCTATACAA+AGG - chr8_3:13438509-13438528 None:intergenic 35.0%
CTTCTAAGCTTCTTCTTCTA+AGG + chr8_3:13438585-13438604 Msa1277710:three_prime_UTR 35.0%
ACGTGTACCAGAGATTATAA+CGG + chr8_3:13438662-13438681 Msa1277710:three_prime_UTR 35.0%
!!! AGGGTTACGTTTTTGGGTTT+TGG + chr8_3:13432591-13432610 Msa1277710:five_prime_UTR 40.0%
ATCTGAACAGGAACACAGAA+TGG + chr8_3:13432791-13432810 Msa1277710:CDS 40.0%
ACAGAATGGTTTACGTATCC+TGG + chr8_3:13432805-13432824 Msa1277710:CDS 40.0%
AGTAAAGCTGACACTTTGGA+TGG - chr8_3:13433785-13433804 None:intergenic 40.0%
CTTCTGTTGTCTCATGTCAT+GGG + chr8_3:13433846-13433865 Msa1277710:intron 40.0%
TCCCATTAATCCTTTGCCAT+TGG + chr8_3:13433926-13433945 Msa1277710:intron 40.0%
GCCAATGGCAAAGGATTAAT+GGG - chr8_3:13433930-13433949 None:intergenic 40.0%
TGCCAATGGCAAAGGATTAA+TGG - chr8_3:13433931-13433950 None:intergenic 40.0%
AATCCTTTGCCATTGGCATT+TGG + chr8_3:13433933-13433952 Msa1277710:intron 40.0%
TCTGTCACAGTCTCTTGATT+TGG + chr8_3:13433956-13433975 Msa1277710:intron 40.0%
TCACAACAATTGACAAGGAG+AGG - chr8_3:13434039-13434058 None:intergenic 40.0%
CCTCATCACAACAATTGACA+AGG - chr8_3:13434044-13434063 None:intergenic 40.0%
CCTTGTCAATTGTTGTGATG+AGG + chr8_3:13434041-13434060 Msa1277710:intron 40.0%
TACGAGGAACAAAGATCTGA+AGG - chr8_3:13434086-13434105 None:intergenic 40.0%
GGCAATAAACTGAATCTACG+AGG - chr8_3:13434102-13434121 None:intergenic 40.0%
CCAATGTAGTTCAAGAATCG+CGG - chr8_3:13434123-13434142 None:intergenic 40.0%
! TCTAAAGTCAAACAGAGGAG+AGG - chr8_3:13434210-13434229 None:intergenic 40.0%
GTGGTCATTCCTTGTTAACT+AGG + chr8_3:13434259-13434278 Msa1277710:intron 40.0%
AGCTCATGTAGCATTTAGTG+AGG + chr8_3:13434457-13434476 Msa1277710:intron 40.0%
!!! CACTTTTTCCACTGGAAGAA+AGG + chr8_3:13434631-13434650 Msa1277710:CDS 40.0%
AACTCCATTTGCAGATGATC+AGG + chr8_3:13434654-13434673 Msa1277710:CDS 40.0%
ACTCCATTTGCAGATGATCA+GGG + chr8_3:13434655-13434674 Msa1277710:CDS 40.0%
AGGAGAACTTACAGAACCAA+AGG - chr8_3:13434763-13434782 None:intergenic 40.0%
ACACCACTAAAAACCAATGC+AGG - chr8_3:13434798-13434817 None:intergenic 40.0%
! GTTGGTAGGTTGGGTTTATT+TGG + chr8_3:13435203-13435222 Msa1277710:intron 40.0%
AGACTGCTCATGTATTGAAC+CGG + chr8_3:13435545-13435564 Msa1277710:intron 40.0%
TAAGCCTGTATGAACTGATG+TGG + chr8_3:13435579-13435598 Msa1277710:intron 40.0%
TATTGAAAGTAGCCTGTACC+AGG + chr8_3:13435739-13435758 Msa1277710:intron 40.0%
ATTGAAAGTAGCCTGTACCA+GGG + chr8_3:13435740-13435759 Msa1277710:intron 40.0%
! CCAACGAACAACTGACTTAA+TGG - chr8_3:13435805-13435824 None:intergenic 40.0%
CCATTAAGTCAGTTGTTCGT+TGG + chr8_3:13435802-13435821 Msa1277710:intron 40.0%
CCAAACTAAATCGGATGACT+TGG - chr8_3:13435959-13435978 None:intergenic 40.0%
CCAAGTCATCCGATTTAGTT+TGG + chr8_3:13435956-13435975 Msa1277710:intron 40.0%
AGTGATACAACCAAGTCATC+TGG + chr8_3:13436007-13436026 Msa1277710:intron 40.0%
!!! CAGTGTTTTTAAAACCGGCT+CGG - chr8_3:13436103-13436122 None:intergenic 40.0%
GGTTATACACTTGCATTCCT+TGG - chr8_3:13436174-13436193 None:intergenic 40.0%
AGTAGTCTCTTAGCTTCACT+AGG + chr8_3:13436407-13436426 Msa1277710:intron 40.0%
TCTATTCTTCATGGTGTCTG+GGG + chr8_3:13436607-13436626 Msa1277710:intron 40.0%
TTATTTGTGGTGAAACTGCG+TGG + chr8_3:13436653-13436672 Msa1277710:intron 40.0%
!! CTTTGCTCCTCTAAGGTAAT+GGG - chr8_3:13436950-13436969 None:intergenic 40.0%
!! TCTTTGCTCCTCTAAGGTAA+TGG - chr8_3:13436951-13436970 None:intergenic 40.0%
GTCATTTCTTTGCTCCTCTA+AGG - chr8_3:13436957-13436976 None:intergenic 40.0%
!! CTTTGCTCCTCTAAGGTAAT+GGG - chr8_3:13436950-13436969 None:intergenic 40.0%
!! TCTTTGCTCCTCTAAGGTAA+TGG - chr8_3:13436951-13436970 None:intergenic 40.0%
GTCATTTCTTTGCTCCTCTA+AGG - chr8_3:13436957-13436976 None:intergenic 40.0%
CAAAAGAACCTGAATCTCCA+AGG - chr8_3:13437166-13437185 None:intergenic 40.0%
AGACATTAAGTGACGCACAA+TGG - chr8_3:13437260-13437279 None:intergenic 40.0%
! CTAGATAGTTTTCTGCAGTG+AGG + chr8_3:13437280-13437299 Msa1277710:intron 40.0%
!! TGAGGGCGTTAATTAATCTG+AGG + chr8_3:13437298-13437317 Msa1277710:intron 40.0%
! TACGTTATGGTACTAGCTCT+TGG - chr8_3:13437437-13437456 None:intergenic 40.0%
CCAATCCAATCTTCTTACCA+AGG - chr8_3:13437834-13437853 None:intergenic 40.0%
CCTTGGTAAGAAGATTGGAT+TGG + chr8_3:13437831-13437850 Msa1277710:intron 40.0%
! TGGTAAGAAGATTGGATTGG+AGG + chr8_3:13437834-13437853 Msa1277710:intron 40.0%
! GGTAAGAAGATTGGATTGGA+GGG + chr8_3:13437835-13437854 Msa1277710:intron 40.0%
! GCTTTTCTATCTACTTGGGT+TGG + chr8_3:13437965-13437984 Msa1277710:intron 40.0%
!! TATCTACTTGGGTTGGGAAA+GGG + chr8_3:13437972-13437991 Msa1277710:intron 40.0%
TCCAATGCTGTTCTTCAACA+CGG + chr8_3:13438310-13438329 Msa1277710:CDS 40.0%
ATCCTAACCTTGTGCATGTT+GGG - chr8_3:13438368-13438387 None:intergenic 40.0%
TATCCTAACCTTGTGCATGT+TGG - chr8_3:13438369-13438388 None:intergenic 40.0%
AGAGAAGGAAGAAAGAAGAG+AGG - chr8_3:13438464-13438483 None:intergenic 40.0%
CTTTCTTCCTTCTCTTGTTC+TGG + chr8_3:13438469-13438488 Msa1277710:three_prime_UTR 40.0%
GTATAGAAAAGGCAGAACTG+TGG + chr8_3:13438511-13438530 Msa1277710:three_prime_UTR 40.0%
!! GAAAGCACCGTTATAATCTC+TGG - chr8_3:13438672-13438691 None:intergenic 40.0%
GGTTTACGTATCCTGGTGTT+TGG + chr8_3:13432812-13432831 Msa1277710:CDS 45.0%
TCTGTCTTTGGTTGTTCTCC+TGG + chr8_3:13432880-13432899 Msa1277710:CDS 45.0%
CTGTCTTTGGTTGTTCTCCT+GGG + chr8_3:13432881-13432900 Msa1277710:CDS 45.0%
ACAATAGTCCAAGCAATCCC+AGG - chr8_3:13432901-13432920 None:intergenic 45.0%
! CATATGTGTCGTGTTGGTGT+CGG + chr8_3:13433246-13433265 Msa1277710:intron 45.0%
! ATATGTGTCGTGTTGGTGTC+GGG + chr8_3:13433247-13433266 Msa1277710:intron 45.0%
! TTATTACCGAAAGCGTGTCC+CGG - chr8_3:13433292-13433311 None:intergenic 45.0%
ACATACAACACCGACACATG+TGG - chr8_3:13433672-13433691 None:intergenic 45.0%
!! CACATGTGTCGGTGTTGTAT+TGG + chr8_3:13433670-13433689 Msa1277710:intron 45.0%
AAGCTGACACTTTGGATGGA+AGG - chr8_3:13433781-13433800 None:intergenic 45.0%
GCTTCTGTTGTCTCATGTCA+TGG + chr8_3:13433845-13433864 Msa1277710:intron 45.0%
AGACCAAATGCCAATGGCAA+AGG - chr8_3:13433939-13433958 None:intergenic 45.0%
TGTGACAGACCAAATGCCAA+TGG - chr8_3:13433945-13433964 None:intergenic 45.0%
TTGTTGTGATGAGGGATGAC+TGG + chr8_3:13434050-13434069 Msa1277710:intron 45.0%
TGTTGTGATGAGGGATGACT+GGG + chr8_3:13434051-13434070 Msa1277710:intron 45.0%
CCGCGATTCTTGAACTACAT+TGG + chr8_3:13434120-13434139 Msa1277710:intron 45.0%
TATTCGTTTGACTGAGAGCC+AGG + chr8_3:13434294-13434313 Msa1277710:intron 45.0%
ATGTAGCATTTAGTGAGGCG+AGG + chr8_3:13434462-13434481 Msa1277710:intron 45.0%
TGTAGCATTTAGTGAGGCGA+GGG + chr8_3:13434463-13434482 Msa1277710:intron 45.0%
ATGGAGTTCCTTTCTTCCAG+TGG - chr8_3:13434642-13434661 None:intergenic 45.0%
CTCCATTTGCAGATGATCAG+GGG + chr8_3:13434656-13434675 Msa1277710:CDS 45.0%
ATCCCCTGATCATCTGCAAA+TGG - chr8_3:13434661-13434680 None:intergenic 45.0%
GTGAAAACTCCCAATCATGC+TGG + chr8_3:13435397-13435416 Msa1277710:intron 45.0%
!!! CAGTGTTTTAAAAACCGGGC+CGG + chr8_3:13435470-13435489 Msa1277710:intron 45.0%
CAGACTAGGAATTGGACCTA+CGG + chr8_3:13435498-13435517 Msa1277710:intron 45.0%
CAGACCACATCAGTTCATAC+AGG - chr8_3:13435586-13435605 None:intergenic 45.0%
CTGTATGAACTGATGTGGTC+TGG + chr8_3:13435584-13435603 Msa1277710:intron 45.0%
TATTGAAAGTAGCCTGCACC+AGG + chr8_3:13435649-13435668 Msa1277710:intron 45.0%
AAAACATGCGGTTCGACTAG+TGG + chr8_3:13436032-13436051 Msa1277710:intron 45.0%
!! CGGTAAGGGTATTAAGTCAC+TGG - chr8_3:13436071-13436090 None:intergenic 45.0%
ACACTTTGATGAGAGGCCTT+TGG - chr8_3:13436463-13436482 None:intergenic 45.0%
AAAGGCCTCTCATCAAAGTG+TGG + chr8_3:13436462-13436481 Msa1277710:intron 45.0%
CTTCACCACACTTTGATGAG+AGG - chr8_3:13436470-13436489 None:intergenic 45.0%
CCTTTGGGCTCATGTTAAGT+AGG - chr8_3:13436990-13437009 None:intergenic 45.0%
CCTACTTAACATGAGCCCAA+AGG + chr8_3:13436987-13437006 Msa1277710:intron 45.0%
CCTTTGGGCTCATGTTAAGT+AGG - chr8_3:13436990-13437009 None:intergenic 45.0%
CCTACTTAACATGAGCCCAA+AGG + chr8_3:13436987-13437006 Msa1277710:intron 45.0%
AGCAAATCCCTTGGAGATTC+AGG + chr8_3:13437155-13437174 Msa1277710:intron 45.0%
ACTTTCTGATAAGGTGGGCA+TGG + chr8_3:13437189-13437208 Msa1277710:intron 45.0%
! GATTGTTGTCTAAGGTGGCT+AGG + chr8_3:13437782-13437801 Msa1277710:intron 45.0%
! AGAAGATTGGATTGGAGGGT+AGG + chr8_3:13437839-13437858 Msa1277710:intron 45.0%
! TAGGCCATAAGAGTGTGAAG+AGG + chr8_3:13437858-13437877 Msa1277710:intron 45.0%
! AGGCCATAAGAGTGTGAAGA+GGG + chr8_3:13437859-13437878 Msa1277710:intron 45.0%
TCTCCCTCTTCACACTCTTA+TGG - chr8_3:13437865-13437884 None:intergenic 45.0%
!! CTATCTACTTGGGTTGGGAA+AGG + chr8_3:13437971-13437990 Msa1277710:intron 45.0%
GTTGGGAAAGGGTTTGATTG+TGG + chr8_3:13437983-13438002 Msa1277710:intron 45.0%
CTCATAGTCAGTTGTGTGTG+AGG - chr8_3:13438288-13438307 None:intergenic 45.0%
ACCGTGTTGAAGAACAGCAT+TGG - chr8_3:13438314-13438333 None:intergenic 45.0%
CGCAACAACTAGCACAATCA+CGG - chr8_3:13438339-13438358 None:intergenic 45.0%
TCCTAACCTTGTGCATGTTG+GGG - chr8_3:13438367-13438386 None:intergenic 45.0%
AGAAAAGGCAGAACTGTGGA+AGG + chr8_3:13438515-13438534 Msa1277710:three_prime_UTR 45.0%
!! TCTATTTATTATTAAAAAAA+CGG - chr8_3:13435905-13435924 None:intergenic 5.0%
!!! TAATATTTATAGAAATTTTT+AGG + chr8_3:13435931-13435950 Msa1277710:intron 5.0%
!!! AATATTTATAGAAATTTTTA+GGG + chr8_3:13435932-13435951 Msa1277710:intron 5.0%
!! TTTATCATAATTTAAATAAT+TGG + chr8_3:13436878-13436897 Msa1277710:intron 5.0%
GTTGTTCTCCTGGGATTGCT+TGG + chr8_3:13432890-13432909 Msa1277710:CDS 50.0%
CACTAGGACATGTTGGACAC+CGG + chr8_3:13433270-13433289 Msa1277710:intron 50.0%
ACTAGGACATGTTGGACACC+GGG + chr8_3:13433271-13433290 Msa1277710:intron 50.0%
!! GTGTCAGGTGCCGATGTATT+TGG - chr8_3:13433601-13433620 None:intergenic 50.0%
CTGTTGTCTCATGTCATGGG+TGG + chr8_3:13433849-13433868 Msa1277710:intron 50.0%
GAGAGGCTCACACGAGATAT+TGG - chr8_3:13434022-13434041 None:intergenic 50.0%
TGATGAGGGATGACTGGGTA+GGG + chr8_3:13434056-13434075 Msa1277710:intron 50.0%
GTAGCATTTAGTGAGGCGAG+GGG + chr8_3:13434464-13434483 Msa1277710:intron 50.0%
! TAGATTGACATGGTGGGAGC+AGG + chr8_3:13434687-13434706 Msa1277710:CDS 50.0%
GAAAGCAGCTCACTCGTAAC+AGG + chr8_3:13434719-13434738 Msa1277710:CDS 50.0%
CAATTCCTAGTCTGACCAGC+CGG - chr8_3:13435492-13435511 None:intergenic 50.0%
CAGGCTTATGCGTGTTTGAC+CGG - chr8_3:13435567-13435586 None:intergenic 50.0%
TTGTTGCACACTATTGGCCC+TGG - chr8_3:13435681-13435700 None:intergenic 50.0%
TTGTTGCACACTATTGGCCC+TGG - chr8_3:13435681-13435700 None:intergenic 50.0%
GGGCCAATAGTGTGCAACAA+TGG + chr8_3:13435681-13435700 Msa1277710:intron 50.0%
AAGTCACTGGCCAAACCACA+GGG - chr8_3:13436058-13436077 None:intergenic 50.0%
TAAGTCACTGGCCAAACCAC+AGG - chr8_3:13436059-13436078 None:intergenic 50.0%
CTCGGTGATCAACTCGGTAA+GGG - chr8_3:13436085-13436104 None:intergenic 50.0%
AAGGGCTCCCATTACCTTAG+AGG + chr8_3:13436940-13436959 Msa1277710:intron 50.0%
AAGGGCTCCCATTACCTTAG+AGG + chr8_3:13436940-13436959 Msa1277710:intron 50.0%
TCTGATAAGGTGGGCATGGT+TGG + chr8_3:13437193-13437212 Msa1277710:intron 50.0%
TGTACGGACAACACCCATGT+AGG + chr8_3:13437748-13437767 Msa1277710:intron 50.0%
GAAGTTCCCCAACATGCACA+AGG + chr8_3:13438358-13438377 Msa1277710:CDS 50.0%
TCCCCAACATGCACAAGGTT+AGG + chr8_3:13438363-13438382 Msa1277710:CDS 50.0%
TGTCAAAGCTGTGCCACCTG+CGG + chr8_3:13432768-13432787 Msa1277710:CDS 55.0%
TTCCTGTTCAGATCCGCAGG+TGG - chr8_3:13432784-13432803 None:intergenic 55.0%
GTGTTCCTGTTCAGATCCGC+AGG - chr8_3:13432787-13432806 None:intergenic 55.0%
TGTCGGGCACTAGGACATGT+TGG + chr8_3:13433263-13433282 Msa1277710:intron 55.0%
! CTTTGGATGGAAGGCGTGTC+TGG - chr8_3:13433772-13433791 None:intergenic 55.0%
CTCATGTCATGGGTGGAGAG+TGG + chr8_3:13433856-13433875 Msa1277710:intron 55.0%
GTGATGAGGGATGACTGGGT+AGG + chr8_3:13434055-13434074 Msa1277710:intron 55.0%
GATGAGGGATGACTGGGTAG+GGG + chr8_3:13434057-13434076 Msa1277710:intron 55.0%
!!! GTTTTAAAAACCGGGCCGGC+TGG + chr8_3:13435474-13435493 Msa1277710:intron 55.0%
! CGGCTGGTCAGACTAGGAAT+TGG + chr8_3:13435490-13435509 Msa1277710:intron 55.0%
CTAGGAATTGGACCTACGGC+CGG + chr8_3:13435502-13435521 Msa1277710:intron 55.0%
! TATTGGCCCTGGTTCGATCC+TGG - chr8_3:13435670-13435689 None:intergenic 55.0%
! GCTCGGTGATCAACTCGGTA+AGG - chr8_3:13436086-13436105 None:intergenic 55.0%
!! TACCGAGTTGATCACCGAGC+CGG + chr8_3:13436086-13436105 Msa1277710:intron 55.0%
!! AACCGGCTCGGTGATCAACT+CGG - chr8_3:13436091-13436110 None:intergenic 55.0%
! TCTAAGGTGGCTAGGCCATG+TGG + chr8_3:13437790-13437809 Msa1277710:intron 55.0%
CTAAGGTGGCTAGGCCATGT+GGG + chr8_3:13437791-13437810 Msa1277710:intron 55.0%
TGCCACCTGCGGATCTGAAC+AGG + chr8_3:13432779-13432798 Msa1277710:CDS 60.0%
!! TCGTGTTGGTGTCGGGCACT+AGG + chr8_3:13433254-13433273 Msa1277710:intron 60.0%
TGGACACCGGGACACGCTTT+CGG + chr8_3:13433283-13433302 Msa1277710:intron 60.0%
TGGTGGGAGCAGGTCGACAA+TGG + chr8_3:13434697-13434716 Msa1277710:CDS 60.0%
AATTGGACCTACGGCCGGAC+AGG + chr8_3:13435507-13435526 Msa1277710:intron 60.0%
ATAGTGACCTGTCCGGCCGT+AGG - chr8_3:13435517-13435536 None:intergenic 60.0%
CCTGCACCAGGATCGAACCA+GGG + chr8_3:13435661-13435680 Msa1277710:intron 60.0%
CCTGTACCAGGGTCGAACCA+GGG + chr8_3:13435751-13435770 Msa1277710:intron 60.0%
! TATTGGCCCTGGTTCGACCC+TGG - chr8_3:13435760-13435779 None:intergenic 60.0%
CGACTAGTGGCCCTGTGGTT+TGG + chr8_3:13436045-13436064 Msa1277710:intron 60.0%
GCCTGCACCAGGATCGAACC+AGG + chr8_3:13435660-13435679 Msa1277710:intron 65.0%
! CCCTGGTTCGATCCTGGTGC+AGG - chr8_3:13435664-13435683 None:intergenic 65.0%
GCCTGTACCAGGGTCGAACC+AGG + chr8_3:13435750-13435769 Msa1277710:intron 65.0%
! CCCTGGTTCGACCCTGGTAC+AGG - chr8_3:13435754-13435773 None:intergenic 65.0%
CGGTTCGACTAGTGGCCCTG+TGG + chr8_3:13436040-13436059 Msa1277710:intron 65.0%
CCTAGTCTGACCAGCCGGCC+CGG - chr8_3:13435487-13435506 None:intergenic 70.0%
! CCGGGCCGGCTGGTCAGACT+AGG + chr8_3:13435484-13435503 Msa1277710:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 13432441 13438767 13432441 ID=Msa1277710;Name=Msa1277710
chr8_3 mRNA 13432441 13438767 13432441 ID=Msa1277710-mRNA-1;Parent=Msa1277710;Name=Msa1277710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=313|1|1|1|1|1|3|355|157
chr8_3 exon 13432441 13432939 13432441 ID=Msa1277710-mRNA-1:exon:5277;Parent=Msa1277710-mRNA-1
chr8_3 exon 13434622 13434770 13434622 ID=Msa1277710-mRNA-1:exon:5278;Parent=Msa1277710-mRNA-1
chr8_3 exon 13438274 13438767 13438274 ID=Msa1277710-mRNA-1:exon:5279;Parent=Msa1277710-mRNA-1
chr8_3 five_prime_UTR 13432441 13432753 13432441 ID=Msa1277710-mRNA-1:five_prime_utr;Parent=Msa1277710-mRNA-1
chr8_3 CDS 13432754 13432939 13432754 ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3 CDS 13434622 13434770 13434622 ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3 CDS 13438274 13438412 13438274 ID=Msa1277710-mRNA-1:cds;Parent=Msa1277710-mRNA-1
chr8_3 three_prime_UTR 13438413 13438767 13438413 ID=Msa1277710-mRNA-1:three_prime_utr;Parent=Msa1277710-mRNA-1
Gene Sequence

>Msa1277710

ATGGCTAATCTGTATGTCAAAGCTGTGCCACCTGCGGATCTGAACAGGAACACAGAATGGTTTACGTATCCTGGTGTTTGGACAACATATATTCTCATTCTCTTCTTTTCATGGATCATGGTTTTGTCTGTCTTTGGTTGTTCTCCTGGGATTGCTTGGACTATTGTTAATCTCGCTCATTTTCTTGTAACATATCACTTTTTCCACTGGAAGAAAGGAACTCCATTTGCAGATGATCAGGGGATCTACAATAGATTGACATGGTGGGAGCAGGTCGACAATGGAAAGCAGCTCACTCGTAACAGGAAGTTTTTGACAGTTGTTCCTTTGGTTCTGTACTTGATAGCCTCACACACAACTGACTATGAGCATCCAATGCTGTTCTTCAACACGGTTGCCGTGATTGTGCTAGTTGTTGCGAAGTTCCCCAACATGCACAAGGTTAGGATATTCGGAATCAACGCTGATAAGTGA
Protein sequence

>Msa1277710

MANLYVKAVPPADLNRNTEWFTYPGVWTTYILILFFSWIMVLSVFGCSPGIAWTIVNLAHFLVTYHFFHWKKGTPFADDQGIYNRLTWWEQVDNGKQLTRNRKFLTVVPLVLYLIASHTTDYEHPMLFFNTVAVIVLVVAKFPNMHKVRIFGINADK*