AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0093420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093420 MtrunA17_Chr2g0331691 100.000 209 0 0 1 209 1 209 5.24e-159 437
Msa0093420 MtrunA17_Chr4g0004661 96.098 205 8 0 5 209 59 263 9.71e-151 419
Msa0093420 MtrunA17_Chr4g0034871 85.854 205 28 1 5 209 3 206 2.55e-132 370
Msa0093420 MtrunA17_Chr1g0201121 74.129 201 45 1 6 199 4 204 1.75e-110 315
Msa0093420 MtrunA17_Chr6g0466301 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0093420 MtrunA17_Chr6g0465491 73.529 204 53 1 6 209 4 206 1.78e-110 315
Msa0093420 MtrunA17_Chr8g0383261 64.734 207 73 0 1 207 3 209 5.74e-101 291
Msa0093420 MtrunA17_Chr6g0466161 56.284 183 78 2 27 209 7 187 6.95e-69 209
Msa0093420 MtrunA17_Chr6g0465471 56.284 183 78 2 27 209 7 187 1.40e-68 208
Msa0093420 MtrunA17_Chr6g0466431 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0093420 MtrunA17_Chr6g0465611 58.879 107 35 1 6 112 4 101 1.25e-41 136
Msa0093420 MtrunA17_Chr2g0276941 36.937 222 116 6 5 209 3 217 1.71e-40 137
Msa0093420 MtrunA17_Chr5g0400131 37.745 204 114 3 12 209 11 207 2.98e-40 136
Msa0093420 MtrunA17_Chr4g0055651 38.308 201 113 5 10 207 8 200 4.69e-40 135
Msa0093420 MtrunA17_Chr2g0276931 36.816 201 117 4 10 207 9 202 1.45e-39 134
Msa0093420 MtrunA17_Chr8g0335471 37.313 201 116 4 10 207 8 201 3.41e-39 133
Msa0093420 MtrunA17_Chr2g0283131 39.086 197 102 6 10 196 13 201 1.47e-38 132
Msa0093420 MtrunA17_Chr7g0250531 37.811 201 114 5 10 207 8 200 1.84e-38 131
Msa0093420 MtrunA17_Chr4g0032201 40.000 165 92 3 10 174 12 169 3.45e-38 131
Msa0093420 MtrunA17_Chr4g0046261 38.071 197 104 6 10 196 13 201 4.97e-38 131
Msa0093420 MtrunA17_Chr4g0040781 41.071 168 91 4 10 176 13 173 8.07e-38 130
Msa0093420 MtrunA17_Chr1g0182321 36.585 205 119 5 10 209 15 213 1.41e-37 130
Msa0093420 MtrunA17_Chr3g0112681 40.000 165 92 3 10 174 12 169 2.01e-37 129
Msa0093420 MtrunA17_Chr1g0182301 36.098 205 120 5 10 209 15 213 4.08e-37 128
Msa0093420 MtrunA17_Chr4g0055081 36.946 203 116 3 12 209 11 206 4.21e-37 128
Msa0093420 MtrunA17_Chr2g0327911 38.378 185 109 4 2 186 7 186 5.86e-37 128
Msa0093420 MtrunA17_Chr3g0123971 37.255 204 114 4 12 209 11 206 7.71e-37 127
Msa0093420 MtrunA17_Chr8g0382221 38.235 204 113 4 12 209 11 207 8.00e-37 127
Msa0093420 MtrunA17_Chr4g0030911 36.585 205 117 5 10 207 15 213 2.05e-36 127
Msa0093420 MtrunA17_Chr1g0212521 35.922 206 118 4 10 207 15 214 5.20e-36 125
Msa0093420 MtrunA17_Chr7g0263071 39.881 168 95 3 10 177 15 176 9.75e-36 125
Msa0093420 MtrunA17_Chr1g0174281 37.037 189 112 3 10 198 15 196 2.82e-35 124
Msa0093420 MtrunA17_Chr7g0214241 36.517 178 106 3 10 187 15 185 5.14e-35 123
Msa0093420 MtrunA17_Chr2g0315551 34.450 209 119 5 10 207 13 214 5.29e-35 123
Msa0093420 MtrunA17_Chr8g0351861 40.741 162 89 3 10 171 16 170 6.97e-35 123
Msa0093420 MtrunA17_Chr2g0325091 39.286 168 94 4 10 176 11 171 2.31e-34 121
Msa0093420 MtrunA17_Chr7g0234201 36.628 172 102 3 10 181 13 177 3.36e-34 121
Msa0093420 MtrunA17_Chr6g0458081 37.209 172 101 3 10 181 6 170 2.46e-33 119
Msa0093420 MtrunA17_Chr2g0319951 38.889 162 92 3 10 171 13 167 3.93e-33 118
Msa0093420 MtrunA17_Chr3g0123821 37.576 165 96 3 10 174 16 173 4.34e-33 118
Msa0093420 MtrunA17_Chr8g0390561 34.783 184 113 3 3 186 2 178 5.12e-33 117
Msa0093420 MtrunA17_Chr6g0482721 39.286 168 94 4 10 176 12 172 7.90e-33 117
Msa0093420 MtrunA17_Chr8g0381841 35.465 172 104 3 3 174 10 174 1.06e-32 117
Msa0093420 MtrunA17_Chr3g0109721 34.595 185 114 3 1 185 1 178 2.25e-32 115
Msa0093420 MtrunA17_Chr7g0231131 38.788 165 94 3 10 174 15 172 2.36e-32 116
Msa0093420 MtrunA17_Chr5g0433561 34.595 185 114 3 1 185 1 178 3.24e-32 115
Msa0093420 MtrunA17_Chr2g0290891 37.654 162 94 3 10 171 6 160 1.49e-31 114
Msa0093420 MtrunA17_Chr1g0189361 36.527 167 99 4 10 176 14 173 2.81e-31 114
Msa0093420 MtrunA17_Chr8g0349711 35.025 197 116 5 7 199 3 191 3.80e-31 113
Msa0093420 MtrunA17_Chr8g0392931 38.889 162 92 3 10 171 14 168 6.27e-31 112
Msa0093420 MtrunA17_Chr7g0275991 37.654 162 94 3 10 171 20 174 8.81e-31 112
Msa0093420 MtrunA17_Chr8g0346421 37.654 162 94 3 10 171 26 180 2.81e-30 111
Msa0093420 MtrunA17_Chr8g0384311 39.024 164 92 5 10 172 13 169 7.02e-30 109
Msa0093420 MtrunA17_Chr8g0349681 39.181 171 93 4 11 177 176 339 1.14e-29 115
Msa0093420 MtrunA17_Chr8g0349681 37.278 169 96 4 3 171 380 538 9.02e-27 107
Msa0093420 MtrunA17_Chr8g0349681 35.503 169 102 4 7 175 10 171 3.22e-26 105
Msa0093420 MtrunA17_Chr1g0199331 34.503 171 104 4 7 176 28 191 7.29e-29 107
Msa0093420 MtrunA17_Chr1g0159481 34.653 202 106 6 10 192 17 211 7.34e-28 104
Msa0093420 MtrunA17_Chr6g0465601 59.211 76 31 0 110 185 3 78 1.60e-27 100
Msa0093420 MtrunA17_Chr7g0265001 38.889 162 92 5 12 172 18 173 2.26e-27 103
Msa0093420 MtrunA17_Chr6g0466421 60.274 73 29 0 113 185 16 88 1.53e-26 97.8
Msa0093420 MtrunA17_Chr1g0197331 37.791 172 99 5 11 180 16 181 1.75e-26 101
Msa0093420 MtrunA17_Chr3g0130271 37.195 164 96 5 10 172 12 169 2.75e-26 100
Msa0093420 MtrunA17_Chr2g0326141 94.118 51 3 0 137 187 305 355 3.53e-26 103
Msa0093420 MtrunA17_Chr1g0180291 38.037 163 93 5 11 172 15 170 3.88e-26 100
Msa0093420 MtrunA17_Chr3g0138121 31.677 161 100 3 11 171 14 164 2.55e-22 90.5
Msa0093420 MtrunA17_Chr3g0138101 31.677 161 100 3 11 171 14 164 2.71e-22 90.5
Msa0093420 MtrunA17_Chr3g0138111 31.677 161 100 3 11 171 14 164 2.80e-22 90.5
Msa0093420 MtrunA17_Chr6g0486041 31.250 208 119 7 10 208 6 198 3.32e-22 89.7
Msa0093420 MtrunA17_Chr2g0325101 30.168 179 110 5 10 179 6 178 6.28e-18 78.2
Msa0093420 MtrunA17_Chr5g0405791 30.168 179 110 6 10 179 6 178 1.76e-17 77.0
Msa0093420 MtrunA17_Chr8g0371501 30.726 179 109 6 10 179 6 178 3.76e-17 76.3
Msa0093420 MtrunA17_Chr3g0117931 30.769 195 117 7 1 186 1 186 4.39e-17 76.3
Msa0093420 MtrunA17_Chr4g0037021 27.957 186 119 4 10 186 6 185 1.28e-16 74.7
Msa0093420 MtrunA17_Chr4g0046211 34.146 123 74 4 10 131 6 122 2.18e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0093420 AT1G52280.1 91.262 206 17 1 4 209 2 206 2.81e-142 395
Msa0093420 AT3G16100.1 89.756 205 20 1 5 209 3 206 8.70e-140 389
Msa0093420 AT3G18820.1 88.780 205 22 1 5 209 3 206 1.74e-134 375
Msa0093420 AT1G49300.2 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0093420 AT1G49300.1 85.854 205 28 1 5 209 3 206 1.03e-130 366
Msa0093420 AT1G22740.1 73.301 206 49 3 5 209 3 203 1.17e-108 310
Msa0093420 AT4G09720.1 69.231 208 57 2 5 209 3 206 2.05e-106 305
Msa0093420 AT4G09720.3 65.753 219 57 3 5 209 3 217 7.88e-103 296
Msa0093420 AT4G09720.4 67.136 213 58 3 5 209 3 211 8.53e-103 296
Msa0093420 AT2G21880.1 70.556 180 53 0 6 185 5 184 1.43e-93 272
Msa0093420 AT4G09720.6 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0093420 AT4G09720.5 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0093420 AT4G09720.2 66.857 175 51 2 38 209 2 172 1.84e-84 248
Msa0093420 AT2G21880.2 66.111 180 53 1 6 185 5 176 7.82e-84 247
Msa0093420 AT2G21880.4 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0093420 AT2G21880.3 70.513 156 46 0 27 182 1 156 3.41e-80 238
Msa0093420 AT5G39620.1 57.558 172 73 0 11 182 6 177 1.22e-70 214
Msa0093420 AT2G44610.1 38.049 205 113 3 12 209 11 208 5.48e-40 136
Msa0093420 AT1G28550.1 38.384 198 105 5 10 197 13 203 7.70e-40 136
Msa0093420 AT1G09630.1 41.818 165 89 3 10 174 12 169 3.29e-39 134
Msa0093420 AT4G17530.1 38.308 201 113 5 10 207 8 200 6.54e-39 133
Msa0093420 AT5G47200.1 38.308 201 113 5 10 207 8 200 1.05e-38 132
Msa0093420 AT2G33870.1 37.563 197 106 5 10 196 13 202 2.02e-38 132
Msa0093420 AT5G60860.1 39.086 197 102 6 10 196 13 201 3.75e-38 131
Msa0093420 AT3G15060.1 41.975 162 87 3 10 171 13 167 6.16e-38 131
Msa0093420 AT1G02130.1 36.318 201 118 4 10 207 8 201 1.82e-37 129
Msa0093420 AT5G45750.1 36.364 209 114 6 10 207 13 213 2.71e-37 129
Msa0093420 AT5G59840.1 36.893 206 116 5 10 207 15 214 3.18e-37 129
Msa0093420 AT3G53610.2 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0093420 AT3G53610.3 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0093420 AT3G53610.1 36.585 205 119 6 10 209 15 213 8.03e-37 128
Msa0093420 AT1G05810.1 36.813 182 108 3 6 187 8 182 1.10e-36 128
Msa0093420 AT1G05810.2 36.813 182 108 3 6 187 54 228 2.65e-36 128
Msa0093420 AT3G46060.2 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0093420 AT3G46060.3 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0093420 AT3G46060.1 36.408 206 117 5 10 207 15 214 3.08e-36 126
Msa0093420 AT5G59150.1 38.182 165 95 3 10 174 12 169 3.49e-36 126
Msa0093420 AT5G64990.1 39.048 210 104 6 12 209 9 206 3.67e-36 126
Msa0093420 AT1G07410.1 38.182 165 95 3 10 174 12 169 9.14e-36 125
Msa0093420 AT3G46830.1 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0093420 AT3G46830.2 38.788 165 94 3 10 174 12 169 1.09e-35 125
Msa0093420 AT2G31680.1 35.955 178 107 3 10 187 12 182 1.12e-35 125
Msa0093420 AT3G11730.1 36.139 202 118 4 10 207 8 202 1.25e-35 125
Msa0093420 AT4G18430.1 33.810 210 119 7 10 207 13 214 1.47e-35 125
Msa0093420 AT5G10260.1 36.585 205 115 4 12 209 11 207 3.18e-35 124
Msa0093420 AT3G12160.1 40.606 165 91 3 10 174 15 172 3.88e-35 124
Msa0093420 AT4G18800.1 39.881 168 93 4 10 176 13 173 7.28e-35 123
Msa0093420 AT5G47960.1 34.906 212 117 5 10 207 15 219 1.41e-34 122
Msa0093420 AT2G43130.1 35.955 178 107 3 10 187 12 182 1.91e-34 122
Msa0093420 AT1G06400.1 35.407 209 116 6 10 207 13 213 2.02e-34 122
Msa0093420 AT1G16920.1 39.286 168 94 5 10 176 13 173 3.97e-34 121
Msa0093420 AT4G39890.1 39.634 164 93 2 11 174 10 167 6.37e-34 120
Msa0093420 AT4G35860.1 37.791 172 100 3 10 181 6 170 9.87e-34 120
Msa0093420 AT5G45130.1 34.286 210 123 5 1 207 1 198 1.28e-33 119
Msa0093420 AT4G39990.1 37.576 165 96 3 10 174 17 174 1.32e-33 120
Msa0093420 AT1G18200.1 40.741 162 89 3 10 171 13 167 1.40e-33 120
Msa0093420 AT5G64990.2 37.788 217 104 7 12 209 9 213 1.63e-33 119
Msa0093420 AT5G03520.1 41.071 168 93 3 10 177 15 176 3.69e-33 119
Msa0093420 AT3G07410.1 36.047 172 103 3 10 181 12 176 9.03e-33 117
Msa0093420 AT2G22290.1 35.437 206 116 4 12 209 11 207 1.12e-32 117
Msa0093420 AT5G65270.1 36.364 165 98 3 10 174 17 174 1.76e-32 117
Msa0093420 AT4G19640.1 35.135 185 113 3 1 185 1 178 2.25e-32 116
Msa0093420 AT4G17160.1 38.509 161 92 3 11 171 7 160 2.65e-32 116
Msa0093420 AT3G09900.1 41.667 168 92 4 10 177 15 176 3.28e-32 116
Msa0093420 AT1G73640.1 39.506 162 91 3 10 171 13 167 4.04e-32 116
Msa0093420 AT5G47520.1 36.527 167 99 3 10 176 14 173 7.56e-32 115
Msa0093420 AT4G17170.1 37.654 162 94 3 10 171 6 160 1.57e-31 114
Msa0093420 AT5G45130.2 34.518 197 114 5 14 207 22 206 4.79e-31 113
Msa0093420 AT3G54840.2 35.119 168 101 4 7 173 30 190 9.34e-30 109
Msa0093420 AT1G01200.1 36.420 162 97 2 10 171 28 183 1.10e-29 110
Msa0093420 AT3G54840.1 34.270 178 109 4 7 183 30 200 1.45e-29 109
Msa0093420 AT3G54840.3 34.884 172 104 4 13 183 2 166 7.88e-29 106
Msa0093420 AT1G43890.3 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0093420 AT1G43890.1 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0093420 AT1G43890.2 39.024 164 92 5 10 172 13 169 1.89e-28 106
Msa0093420 AT5G03530.2 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0093420 AT5G03530.1 36.082 194 98 7 12 186 15 201 1.55e-27 104
Msa0093420 AT4G19640.2 36.486 148 89 2 1 148 1 143 1.76e-27 102
Msa0093420 AT4G19640.3 38.168 131 77 1 1 131 1 127 5.29e-26 99.8
Msa0093420 AT5G03520.2 41.667 132 71 3 46 177 41 166 1.01e-24 96.7
Msa0093420 AT5G55190.1 31.677 161 100 3 11 171 14 164 3.44e-22 90.5
Msa0093420 AT5G20010.1 32.530 166 92 5 11 171 14 164 3.70e-22 90.5
Msa0093420 AT5G20020.1 31.677 161 100 3 11 171 14 164 3.94e-22 90.5
Msa0093420 AT3G09910.5 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0093420 AT3G09910.4 35.465 172 103 5 11 181 14 178 9.49e-22 88.6
Msa0093420 AT5G59150.2 37.398 123 70 3 52 174 3 118 9.93e-22 87.8
Msa0093420 AT3G09910.3 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0093420 AT3G09910.1 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0093420 AT3G09910.2 36.196 163 96 5 11 172 14 169 1.46e-21 88.6
Msa0093420 AT4G28950.1 31.068 206 121 7 10 208 6 197 3.14e-21 87.8
Msa0093420 AT4G35860.2 36.923 130 75 3 52 181 2 124 9.37e-21 85.1
Msa0093420 AT5G55080.1 29.814 161 103 3 11 171 14 164 1.04e-20 86.7
Msa0093420 AT5G45970.1 29.444 180 112 5 10 180 6 179 8.01e-18 78.6
Msa0093420 AT5G62880.1 31.746 189 112 6 1 180 1 181 1.96e-17 77.8
Msa0093420 AT3G48040.1 31.746 189 112 6 1 180 1 181 2.53e-17 77.4
Msa0093420 AT4G35020.1 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0093420 AT4G35020.2 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0093420 AT4G35020.3 30.000 180 111 5 10 180 6 179 1.04e-16 75.5
Msa0093420 AT1G20090.1 29.050 179 112 5 10 179 5 177 1.58e-16 74.7
Msa0093420 AT2G44690.1 29.651 172 106 5 10 172 18 183 2.05e-16 74.7
Msa0093420 AT1G75840.1 29.050 179 112 5 10 179 6 178 3.07e-16 73.9
Msa0093420 AT3G51300.1 29.609 179 111 5 10 179 6 178 3.65e-16 73.9
Msa0093420 AT2G17800.2 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0093420 AT2G17800.1 29.050 179 112 5 10 179 6 178 1.93e-15 72.0
Msa0093420 AT4G35950.1 29.050 179 112 5 10 179 6 178 2.50e-15 71.6
Msa0093420 AT5G62880.2 35.606 132 76 5 1 131 1 124 3.75e-15 71.2
Msa0093420 AT3G48040.2 35.606 132 76 5 1 131 1 124 1.05e-14 69.7
Msa0093420 AT5G09910.1 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0093420 AT5G09910.4 26.012 173 99 5 11 156 23 193 3.89e-13 67.4
Msa0093420 AT4G35020.4 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0093420 AT4G35020.5 33.058 121 74 4 10 129 6 120 7.61e-13 63.9
Msa0093420 AT5G64813.1 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0093420 AT5G64813.3 25.758 198 109 7 11 173 23 217 4.93e-12 64.3
Msa0093420 AT5G64813.2 25.758 198 109 7 11 173 23 217 4.93e-12 64.3

Find 65 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCGACATCAATTGTTTC+TGG 0.232108 1_2:+76161948 None:intergenic
ATTTGAAGGATGCAGTATTT+TGG 0.252931 1_2:+76161843 None:intergenic
GTAATACTAATACATATATA+TGG 0.256785 1_2:+76161658 None:intergenic
AAAACTCACAATTCTTCTTC+AGG 0.319718 1_2:+76162305 None:intergenic
GCGAGAAGAGTTCCTTATTC+AGG 0.320875 1_2:-76162771 Msa0093420:intron
TTGTTTCCCAACACCACAAA+TGG 0.348208 1_2:+76162634 None:intergenic
AAATACTGCATCCTTCAAAT+TGG 0.358102 1_2:-76161840 Msa0093420:three_prime_UTR
ACTCTTCTCGCCAGTGGTTA+AGG 0.372983 1_2:+76162783 None:intergenic
TCCTGAAAACTTCCCATTTG+TGG 0.376974 1_2:-76162647 Msa0093420:CDS
AGACAGGTTGTTCACATTGC+AGG 0.381648 1_2:-76164264 Msa0093420:intron
AAAGTTTAGTAATCAGTATA+AGG 0.387117 1_2:-76164330 Msa0093420:CDS
TTTGCAGAGGTCTCAAAGTA+TGG 0.397953 1_2:+76162389 None:intergenic
AACTTCCCATTTGTGGTGTT+GGG 0.400986 1_2:-76162640 Msa0093420:CDS
GTCTTCAACTTGAACTTCCT+TGG 0.413731 1_2:+76164283 None:intergenic
GTCATCATCCTCGGTGATAG+TGG 0.414536 1_2:-76164544 Msa0093420:CDS
GTCAGCTTCACATGCAAGAT+TGG 0.428919 1_2:-76161868 Msa0093420:three_prime_UTR
GGACGGCAACAGAGGTCAAC+AGG 0.434788 1_2:-76161921 Msa0093420:CDS
ACAATTGATGTCGGTGGCGG+TGG 0.446109 1_2:-76161942 Msa0093420:CDS
CAACTTGAACTTCCTTGGTA+AGG 0.448202 1_2:+76164288 None:intergenic
AAAGGCATGGTGTGCTTCCA+AGG 0.464084 1_2:-76162420 Msa0093420:CDS
GATCTGGGATACTGCTGGTC+AGG 0.467671 1_2:-76162897 Msa0093420:CDS
TAATACTAATACATATATAT+GGG 0.473672 1_2:+76161659 None:intergenic
CAGGAGAGGTTTCAAAGTCT+TGG 0.475629 1_2:-76162878 Msa0093420:CDS
TCCTTCTTGTATCTCTCTAG+TGG 0.482873 1_2:-76161772 Msa0093420:three_prime_UTR
AAACTTCCCATTTGTGGTGT+TGG 0.495054 1_2:-76162641 Msa0093420:CDS
AGAATGTAGCACCAATTTGA+AGG 0.498460 1_2:+76161829 None:intergenic
GGAAACAAAGTAGATGTTGA+TGG 0.512592 1_2:-76162619 Msa0093420:CDS
CTTTGAGACCTCTGCAAAGG+AGG 0.516360 1_2:-76162384 Msa0093420:CDS
AAAGTATGGTATATTCCCCT+TGG 0.522925 1_2:+76162403 None:intergenic
AGGAAGTTCAAGTTGAAGAC+AGG 0.529226 1_2:-76164280 Msa0093420:CDS
GAGAATGAGAAGCCATGGAT+TGG 0.529989 1_2:+76164587 None:intergenic
ACAGTTTCAATTCCAATCCA+TGG 0.530102 1_2:-76164599 Msa0093420:exon
TGTTTCCCAACACCACAAAT+GGG 0.537488 1_2:+76162635 None:intergenic
GTAACATTAAGTAAACAAAC+AGG 0.539021 1_2:+76161737 None:intergenic
TTGATGTCGGTGGCGGTGGA+CGG 0.543988 1_2:-76161938 Msa0093420:CDS
GCGGCGAGAATGAGAAGCCA+TGG 0.559756 1_2:+76164582 None:intergenic
ATGCAGATCTGGGATACTGC+TGG 0.566605 1_2:-76162902 Msa0093420:intron
GAAACAATTGATGTCGGTGG+CGG 0.576334 1_2:-76161945 Msa0093420:CDS
GAGGTTTCAAAGTCTTGGTG+TGG 0.576541 1_2:-76162873 Msa0093420:CDS
CTTGGTGTGGCTTTCTACCG+AGG 0.578330 1_2:-76162860 Msa0093420:CDS
AATCAGTATAAGGCTACCAT+TGG 0.580849 1_2:-76164320 Msa0093420:CDS
TTTGAGACCTCTGCAAAGGA+GGG 0.585589 1_2:-76162383 Msa0093420:CDS
AAGGCATGGTGTGCTTCCAA+GGG 0.586547 1_2:-76162419 Msa0093420:CDS
CAAGAAGGACAAGTTGTCCC+AGG 0.588064 1_2:+76161786 None:intergenic
GGTAAGGAAATCAGCACCAA+TGG 0.599639 1_2:+76164304 None:intergenic
GCCACTAGAGAGATACAAGA+AGG 0.599909 1_2:+76161771 None:intergenic
AACAAAGTAGATGTTGATGG+TGG 0.603728 1_2:-76162616 Msa0093420:CDS
GTGGCGGTGGACGGCAACAG+AGG 0.605632 1_2:-76161929 Msa0093420:CDS
CTGAGAAGAAAGCAAAGGCA+TGG 0.611252 1_2:-76162433 Msa0093420:CDS
TAAGGAACTCTTCTCGCCAG+TGG 0.617763 1_2:+76162777 None:intergenic
TCATCATCCTCGGTGATAGT+GGG 0.618638 1_2:-76164543 Msa0093420:intron
TTATTGAAAGTCATCATCCT+CGG 0.622878 1_2:-76164553 Msa0093420:CDS
CCAGAAACAATTGATGTCGG+TGG 0.629506 1_2:-76161948 Msa0093420:CDS
GGGATACTGCTGGTCAGGAG+AGG 0.630015 1_2:-76162892 Msa0093420:CDS
TGGTGCTGATTTCCTTACCA+AGG 0.632236 1_2:-76164300 Msa0093420:CDS
GGTTTCTGAGAAGAAAGCAA+AGG 0.639361 1_2:-76162438 Msa0093420:CDS
ATTAAAACCCTCCTTTGCAG+AGG 0.646100 1_2:+76162376 None:intergenic
ATACTTTGAGACCTCTGCAA+AGG 0.653339 1_2:-76162387 Msa0093420:CDS
ATGCCAGAAACAATTGATGT+CGG 0.654391 1_2:-76161951 Msa0093420:CDS
TGACATTTACATCATAAACA+AGG 0.673979 1_2:+76162822 None:intergenic
TGATGACTTTCAATAACATG+CGG 0.690006 1_2:+76164560 None:intergenic
GGACACAGCAATCTGCACCT+CGG 0.707086 1_2:+76162843 None:intergenic
AGGCATGGTGTGCTTCCAAG+GGG 0.713588 1_2:-76162418 Msa0093420:CDS
TGACTTTCAATAACATGCGG+CGG 0.715122 1_2:+76164563 None:intergenic
TTATATACCCACTATCACCG+AGG 0.799645 1_2:+76164536 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATAAATAAATAATTGA+AGG - chr1_2:76162957-76162976 Msa0093420:intron 10.0%
!! TATTTACTTATGAAAAATAA+GGG + chr1_2:76164506-76164525 None:intergenic 10.0%
!! ATATTTACTTATGAAAAATA+AGG + chr1_2:76164507-76164526 None:intergenic 10.0%
!! TAATACTAATACATATATAT+GGG + chr1_2:76164560-76164579 None:intergenic 10.0%
!! TTCATATTACATACATAATT+AGG + chr1_2:76163197-76163216 None:intergenic 15.0%
!! AATTATGTATGTAATATGAA+AGG - chr1_2:76163197-76163216 Msa0093420:intron 15.0%
!! ATTATGTATGTAATATGAAA+GGG - chr1_2:76163198-76163217 Msa0093420:intron 15.0%
!!! CAAAAAAAAAAAAGTTTTGT+TGG - chr1_2:76163998-76164017 Msa0093420:intron 15.0%
!!! AATCTTATTTTAATATAGAG+TGG - chr1_2:76164068-76164087 Msa0093420:intron 15.0%
!! ATTTACTTATGAAAAATAAG+GGG + chr1_2:76164505-76164524 None:intergenic 15.0%
!! GTAATACTAATACATATATA+TGG + chr1_2:76164561-76164580 None:intergenic 15.0%
!!! TTTATTTTTATTTGTTTGGC+AGG - chr1_2:76161825-76161844 Msa0093420:three_prime_UTR 20.0%
!!! TTATTTTTATTTGTTTGGCA+GGG - chr1_2:76161826-76161845 Msa0093420:three_prime_UTR 20.0%
!! AAAGTTTAGTAATCAGTATA+AGG - chr1_2:76161886-76161905 Msa0093420:three_prime_UTR 20.0%
!!! ATATATTTTGACATTGAGAA+TGG + chr1_2:76162403-76162422 None:intergenic 20.0%
!! CTACATGTTAAATGTTAATA+GGG + chr1_2:76162432-76162451 None:intergenic 20.0%
!!! ATTACTATCAGCTTTTAAAT+AGG + chr1_2:76162518-76162537 None:intergenic 20.0%
!!! ACCTAATTGATTTGATTTTT+AGG - chr1_2:76163533-76163552 Msa0093420:intron 20.0%
!!! GAATTCTGAAAAATAATTTG+AGG + chr1_2:76163654-76163673 None:intergenic 20.0%
!!! TTTGATTTACCATATGTTTA+CGG - chr1_2:76163714-76163733 Msa0093420:intron 20.0%
!!! AAAAAAAAAGTTTTGTTGGT+AGG - chr1_2:76164002-76164021 Msa0093420:intron 20.0%
!!! AGGATTTAGAATATTAAAGA+TGG - chr1_2:76164022-76164041 Msa0093420:intron 20.0%
!!! TTTAGAATATTAAAGATGGT+AGG - chr1_2:76164026-76164045 Msa0093420:intron 20.0%
!! TTAGAATATTAAAGATGGTA+GGG - chr1_2:76164027-76164046 Msa0093420:intron 20.0%
!! TTTACTTATGAAAAATAAGG+GGG + chr1_2:76164504-76164523 None:intergenic 20.0%
! AGTTGAAATTGAAAAGGAAA+AGG + chr1_2:76161737-76161756 None:intergenic 25.0%
! TGTGATAGTTGAAATTGAAA+AGG + chr1_2:76161743-76161762 None:intergenic 25.0%
! TTTCAACTATCACATGTTAA+AGG - chr1_2:76161749-76161768 Msa0093420:three_prime_UTR 25.0%
! TTCAACTATCACATGTTAAA+GGG - chr1_2:76161750-76161769 Msa0093420:three_prime_UTR 25.0%
!! AATTAATGTTCGATTCGATT+CGG - chr1_2:76161794-76161813 Msa0093420:three_prime_UTR 25.0%
!! TCCAATATATGACATGTTTT+AGG - chr1_2:76162004-76162023 Msa0093420:intron 25.0%
! TCCTAAAACATGTCATATAT+TGG + chr1_2:76162008-76162027 None:intergenic 25.0%
! GCTACATGTTAAATGTTAAT+AGG + chr1_2:76162433-76162452 None:intergenic 25.0%
! TGATATTCTGACATCAATTT+GGG + chr1_2:76162470-76162489 None:intergenic 25.0%
! AGTTTATACCCAAAAAAACA+GGG + chr1_2:76162558-76162577 None:intergenic 25.0%
! TAGTTTATACCCAAAAAAAC+AGG + chr1_2:76162559-76162578 None:intergenic 25.0%
!! CTTTTGTCTAAGAAAGATAA+AGG + chr1_2:76162767-76162786 None:intergenic 25.0%
! GATTCTTGAGTAATATGTTT+GGG + chr1_2:76162932-76162951 None:intergenic 25.0%
! AGATTCTTGAGTAATATGTT+TGG + chr1_2:76162933-76162952 None:intergenic 25.0%
!! TATCAAAAAACAAAGTGTCA+TGG + chr1_2:76163016-76163035 None:intergenic 25.0%
!! AAATTCATGTTTCTTTTTCC+TGG - chr1_2:76163110-76163129 Msa0093420:intron 25.0%
!!! AGACCATTGTATTGATTAAA+TGG - chr1_2:76163162-76163181 Msa0093420:intron 25.0%
! GATCCATTTAATCAATACAA+TGG + chr1_2:76163168-76163187 None:intergenic 25.0%
! TGACATTTACATCATAAACA+AGG + chr1_2:76163397-76163416 None:intergenic 25.0%
! GAATAAAAATCACCTGAATA+AGG + chr1_2:76163460-76163479 None:intergenic 25.0%
!! TTCAGGTGATTTTTATTCTT+TGG - chr1_2:76163462-76163481 Msa0093420:intron 25.0%
! ATCTTAACACAATTTCTGAA+GGG - chr1_2:76163494-76163513 Msa0093420:intron 25.0%
! GCCTAAAAATCAAATCAATT+AGG + chr1_2:76163537-76163556 None:intergenic 25.0%
! GAGATAAATAACTTACAACT+CGG + chr1_2:76163632-76163651 None:intergenic 25.0%
! TTGATTTACCATATGTTTAC+GGG - chr1_2:76163715-76163734 Msa0093420:intron 25.0%
! AAAGAGCAAAACTTCTTAAA+TGG + chr1_2:76163978-76163997 None:intergenic 25.0%
! TAGAATATTAAAGATGGTAG+GGG - chr1_2:76164028-76164047 Msa0093420:intron 25.0%
! AGTTATACATTCATTCATAG+CGG + chr1_2:76164133-76164152 None:intergenic 25.0%
!!! GTATAACTTGCTATTTCAAT+TGG - chr1_2:76164145-76164164 Msa0093420:intron 25.0%
! AGGATCAAACAAAATATCTA+TGG + chr1_2:76164223-76164242 None:intergenic 25.0%
!!! ATAGATATTTTGTTTGATCC+TGG - chr1_2:76164222-76164241 Msa0093420:intron 25.0%
! GTAACATTAAGTAAACAAAC+AGG + chr1_2:76164482-76164501 None:intergenic 25.0%
TGATGACTTTCAATAACATG+CGG + chr1_2:76161659-76161678 None:intergenic 30.0%
TTATTGAAAGTCATCATCCT+CGG - chr1_2:76161663-76161682 Msa0093420:three_prime_UTR 30.0%
AATTGAAAAGGAAAAGGAGA+AGG + chr1_2:76161731-76161750 None:intergenic 30.0%
CATGTCATATATTGGAAACA+CGG + chr1_2:76162000-76162019 None:intergenic 30.0%
!!! GTTTTAGGATCTATAAAGCT+CGG - chr1_2:76162019-76162038 Msa0093420:intron 30.0%
GACAAATGTTAGTAAGTTAG+CGG - chr1_2:76162072-76162091 Msa0093420:intron 30.0%
CAATATTAAGTGTATGACCT+TGG + chr1_2:76162127-76162146 None:intergenic 30.0%
ACACTGTCGTAAATTGTAAT+CGG + chr1_2:76162320-76162339 None:intergenic 30.0%
GAGAATGGAAAAAAGAAGTA+TGG + chr1_2:76162388-76162407 None:intergenic 30.0%
GTGATATTCTGACATCAATT+TGG + chr1_2:76162471-76162490 None:intergenic 30.0%
! TATCAGCTTTTAAATAGGAC+TGG + chr1_2:76162513-76162532 None:intergenic 30.0%
!!! TTTCATCTACCCTGTTTTTT+TGG - chr1_2:76162546-76162565 Msa0093420:intron 30.0%
!!! TTCATCTACCCTGTTTTTTT+GGG - chr1_2:76162547-76162566 Msa0093420:intron 30.0%
!! ACAAAAGCATCTTCTAACTT+TGG - chr1_2:76162635-76162654 Msa0093420:CDS 30.0%
CTTAGACAAAAGTCAAATGT+TGG - chr1_2:76162775-76162794 Msa0093420:CDS 30.0%
! AATTTAATCCTGTGCACTTT+TGG - chr1_2:76162808-76162827 Msa0093420:CDS 30.0%
TCACTACATGATGAAAAACA+AGG - chr1_2:76162848-76162867 Msa0093420:CDS 30.0%
AACAAGGTTTAAGAAGCTAT+TGG - chr1_2:76162864-76162883 Msa0093420:CDS 30.0%
ACAAGGTTTAAGAAGCTATT+GGG - chr1_2:76162865-76162884 Msa0093420:CDS 30.0%
GATATCTCTTCAATGTGATT+TGG + chr1_2:76162910-76162929 None:intergenic 30.0%
TACTTCCTAGATACATATCT+AGG - chr1_2:76162981-76163000 Msa0093420:intron 30.0%
ATATGCCTAGATATGTATCT+AGG + chr1_2:76162989-76163008 None:intergenic 30.0%
GATCTTAACACAATTTCTGA+AGG - chr1_2:76163493-76163512 Msa0093420:intron 30.0%
AGTCTATCAACTACATATGA+TGG + chr1_2:76163676-76163695 None:intergenic 30.0%
TGATTTACCATATGTTTACG+GGG - chr1_2:76163716-76163735 Msa0093420:intron 30.0%
!!! TTCATTCTTGAGAGCATTTT+TGG + chr1_2:76163891-76163910 None:intergenic 30.0%
AAAACTCACAATTCTTCTTC+AGG + chr1_2:76163914-76163933 None:intergenic 30.0%
AGAATATTAAAGATGGTAGG+GGG - chr1_2:76164029-76164048 Msa0093420:intron 30.0%
! ATTTGAAGGATGCAGTATTT+TGG + chr1_2:76164376-76164395 None:intergenic 30.0%
AAATACTGCATCCTTCAAAT+TGG - chr1_2:76164376-76164395 Msa0093420:intron 30.0%
ACAGTTTCAATTCCAATCCA+TGG - chr1_2:76161617-76161636 Msa0093420:three_prime_UTR 35.0%
!! TTTTATTTGTTTGGCAGGGT+TGG - chr1_2:76161830-76161849 Msa0093420:three_prime_UTR 35.0%
AATCAGTATAAGGCTACCAT+TGG - chr1_2:76161896-76161915 Msa0093420:exon 35.0%
ATTAAGTGTATGACCTTGGT+AGG + chr1_2:76162123-76162142 None:intergenic 35.0%
GTAATCGGCATCAACTAATT+CGG + chr1_2:76162305-76162324 None:intergenic 35.0%
! TTTAAATAGGACTGGTGAAG+TGG + chr1_2:76162505-76162524 None:intergenic 35.0%
! TTTTGTGACTAGTGTGAACA+AGG + chr1_2:76162621-76162640 None:intergenic 35.0%
GAGACAAGAATGTCAAACAT+TGG + chr1_2:76162731-76162750 None:intergenic 35.0%
ATGTAGTGAGAGGAACAAAA+TGG + chr1_2:76162837-76162856 None:intergenic 35.0%
! GTTTTTCATCATGTAGTGAG+AGG + chr1_2:76162847-76162866 None:intergenic 35.0%
TTGAGATATGATGACATGGT+TGG - chr1_2:76163084-76163103 Msa0093420:intron 35.0%
TGAGATATGATGACATGGTT+GGG - chr1_2:76163085-76163104 Msa0093420:intron 35.0%
!!! AAGCATCGATCTTTTTATCC+AGG + chr1_2:76163131-76163150 None:intergenic 35.0%
!! CTTTTGAAAACCTTAACCAC+TGG - chr1_2:76163423-76163442 Msa0093420:intron 35.0%
! TTAACACAATTTCTGAAGGG+CGG - chr1_2:76163497-76163516 Msa0093420:intron 35.0%
GGAAACAAAGTAGATGTTGA+TGG - chr1_2:76163597-76163616 Msa0093420:intron 35.0%
! AACAAAGTAGATGTTGATGG+TGG - chr1_2:76163600-76163619 Msa0093420:intron 35.0%
GATTTACCATATGTTTACGG+GGG - chr1_2:76163717-76163736 Msa0093420:intron 35.0%
ATTTACCATATGTTTACGGG+GGG - chr1_2:76163718-76163737 Msa0093420:intron 35.0%
AAAGTATGGTATATTCCCCT+TGG + chr1_2:76163816-76163835 None:intergenic 35.0%
!! AAAGGAGGGTTTTAATGTTG+AGG - chr1_2:76163847-76163866 Msa0093420:intron 35.0%
TTTATGCGCATTGTTAACTG+TGG - chr1_2:76163951-76163970 Msa0093420:intron 35.0%
! GTTTCAAGTGATTCTCTTTG+AGG - chr1_2:76164179-76164198 Msa0093420:intron 35.0%
ATCTGTCATAATCAACAACC+AGG + chr1_2:76164243-76164262 None:intergenic 35.0%
ATGCCAGAAACAATTGATGT+CGG - chr1_2:76164265-76164284 Msa0093420:CDS 35.0%
AGAATGTAGCACCAATTTGA+AGG + chr1_2:76164390-76164409 None:intergenic 35.0%
! ATTTTCAGCAATGAAAAGCC+TGG - chr1_2:76164412-76164431 Msa0093420:intron 35.0%
! TTTTCAGCAATGAAAAGCCT+GGG - chr1_2:76164413-76164432 Msa0093420:intron 35.0%
TGACTTTCAATAACATGCGG+CGG + chr1_2:76161656-76161675 None:intergenic 40.0%
TTATATACCCACTATCACCG+AGG + chr1_2:76161683-76161702 None:intergenic 40.0%
AAAGGAAAAGGAGAAGGAGA+AGG + chr1_2:76161725-76161744 None:intergenic 40.0%
CAACTTGAACTTCCTTGGTA+AGG + chr1_2:76161931-76161950 None:intergenic 40.0%
GTCTTCAACTTGAACTTCCT+TGG + chr1_2:76161936-76161955 None:intergenic 40.0%
!! AGGAAGTTCAAGTTGAAGAC+AGG - chr1_2:76161936-76161955 Msa0093420:CDS 40.0%
TCGACGAGACAACACATATA+CGG - chr1_2:76162151-76162170 Msa0093420:intron 40.0%
AGTCTGTGCTTCTTTCGTTA+CGG + chr1_2:76162351-76162370 None:intergenic 40.0%
TTACATGACCCACTTGAAGA+TGG + chr1_2:76162701-76162720 None:intergenic 40.0%
! AATGGATTCCAAAAGTGCAC+AGG + chr1_2:76162819-76162838 None:intergenic 40.0%
! GAAGCTATTGGGCATGTTTT+TGG - chr1_2:76162876-76162895 Msa0093420:CDS 40.0%
GTGCTTGAGATATGATGACA+TGG - chr1_2:76163080-76163099 Msa0093420:intron 40.0%
TCCTGAAAACTTCCCATTTG+TGG - chr1_2:76163569-76163588 Msa0093420:intron 40.0%
! ACCACAAATGGGAAGTTTTC+AGG + chr1_2:76163573-76163592 None:intergenic 40.0%
AAACTTCCCATTTGTGGTGT+TGG - chr1_2:76163575-76163594 Msa0093420:intron 40.0%
AACTTCCCATTTGTGGTGTT+GGG - chr1_2:76163576-76163595 Msa0093420:intron 40.0%
TGTTTCCCAACACCACAAAT+GGG + chr1_2:76163584-76163603 None:intergenic 40.0%
TTGTTTCCCAACACCACAAA+TGG + chr1_2:76163585-76163604 None:intergenic 40.0%
TAGACTTTCTTCCTCTTGAG+AGG - chr1_2:76163690-76163709 Msa0093420:intron 40.0%
AGACTTTCTTCCTCTTGAGA+GGG - chr1_2:76163691-76163710 Msa0093420:intron 40.0%
GTAAATCAAACCCTCTCAAG+AGG + chr1_2:76163704-76163723 None:intergenic 40.0%
ATTAACCCCCCGTAAACATA+TGG + chr1_2:76163726-76163745 None:intergenic 40.0%
! GCATTTGTTGCTTCTGTTTC+AGG - chr1_2:76163757-76163776 Msa0093420:intron 40.0%
! GGTTTCTGAGAAGAAAGCAA+AGG - chr1_2:76163778-76163797 Msa0093420:intron 40.0%
TTTGCAGAGGTCTCAAAGTA+TGG + chr1_2:76163830-76163849 None:intergenic 40.0%
!! ATACTTTGAGACCTCTGCAA+AGG - chr1_2:76163829-76163848 Msa0093420:intron 40.0%
ATTAAAACCCTCCTTTGCAG+AGG + chr1_2:76163843-76163862 None:intergenic 40.0%
! TCAAGTGATTCTCTTTGAGG+AGG - chr1_2:76164182-76164201 Msa0093420:intron 40.0%
TCCTTCTTGTATCTCTCTAG+TGG - chr1_2:76164444-76164463 Msa0093420:intron 40.0%
GAGAATGAGAAGCCATGGAT+TGG + chr1_2:76161632-76161651 None:intergenic 45.0%
TCATCATCCTCGGTGATAGT+GGG - chr1_2:76161673-76161692 Msa0093420:three_prime_UTR 45.0%
AAAGGAGAAGGAGAAGGAGA+AGG + chr1_2:76161719-76161738 None:intergenic 45.0%
GGTAAGGAAATCAGCACCAA+TGG + chr1_2:76161915-76161934 None:intergenic 45.0%
!! TGGTGCTGATTTCCTTACCA+AGG - chr1_2:76161916-76161935 Msa0093420:CDS 45.0%
AGACAGGTTGTTCACATTGC+AGG - chr1_2:76161952-76161971 Msa0093420:CDS 45.0%
ACCAATTGAGCTTCCTACCA+AGG - chr1_2:76162107-76162126 Msa0093420:intron 45.0%
ACCTTGGTAGGAAGCTCAAT+TGG + chr1_2:76162111-76162130 None:intergenic 45.0%
CGACGAGACAACACATATAC+GGG - chr1_2:76162152-76162171 Msa0093420:intron 45.0%
GTCTGTGCTTCTTTCGTTAC+GGG + chr1_2:76162350-76162369 None:intergenic 45.0%
! TGGTGGTGAACTTCATGAAC+AGG + chr1_2:76162681-76162700 None:intergenic 45.0%
AGTTCACCACCATCTTCAAG+TGG - chr1_2:76162689-76162708 Msa0093420:intron 45.0%
GTTCACCACCATCTTCAAGT+GGG - chr1_2:76162690-76162709 Msa0093420:intron 45.0%
TCGTTGTGTACATGCAGATC+TGG - chr1_2:76163303-76163322 Msa0093420:intron 45.0%
CGTTGTGTACATGCAGATCT+GGG - chr1_2:76163304-76163323 Msa0093420:intron 45.0%
CAGGAGAGGTTTCAAAGTCT+TGG - chr1_2:76163338-76163357 Msa0093420:intron 45.0%
GAGGTTTCAAAGTCTTGGTG+TGG - chr1_2:76163343-76163362 Msa0093420:intron 45.0%
GCGAGAAGAGTTCCTTATTC+AGG - chr1_2:76163445-76163464 Msa0093420:intron 45.0%
!! GGGAAGTTTTCAGGATCAGA+TGG + chr1_2:76163564-76163583 None:intergenic 45.0%
CTGAGAAGAAAGCAAAGGCA+TGG - chr1_2:76163783-76163802 Msa0093420:intron 45.0%
! TTTGAGACCTCTGCAAAGGA+GGG - chr1_2:76163833-76163852 Msa0093420:intron 45.0%
! GTGATTCTCTTTGAGGAGGA+TGG - chr1_2:76164186-76164205 Msa0093420:intron 45.0%
! TTCTCTTTGAGGAGGATGGT+TGG - chr1_2:76164190-76164209 Msa0093420:intron 45.0%
CCACCGACATCAATTGTTTC+TGG + chr1_2:76164271-76164290 None:intergenic 45.0%
CCAGAAACAATTGATGTCGG+TGG - chr1_2:76164268-76164287 Msa0093420:CDS 45.0%
GAAACAATTGATGTCGGTGG+CGG - chr1_2:76164271-76164290 Msa0093420:CDS 45.0%
GTCAGCTTCACATGCAAGAT+TGG - chr1_2:76164348-76164367 Msa0093420:CDS 45.0%
GCCACTAGAGAGATACAAGA+AGG + chr1_2:76164448-76164467 None:intergenic 45.0%
!!! TTTTTTTATTTTTATTTGTT+TGG - chr1_2:76161821-76161840 Msa0093420:three_prime_UTR 5.0%
GTCATCATCCTCGGTGATAG+TGG - chr1_2:76161672-76161691 Msa0093420:three_prime_UTR 50.0%
! TAGGACTGGTGAAGTGGTGA+TGG + chr1_2:76162499-76162518 None:intergenic 50.0%
CATGACCCACTTGAAGATGG+TGG + chr1_2:76162698-76162717 None:intergenic 50.0%
! ATGCAGATCTGGGATACTGC+TGG - chr1_2:76163314-76163333 Msa0093420:intron 50.0%
ACTCTTCTCGCCAGTGGTTA+AGG + chr1_2:76163436-76163455 None:intergenic 50.0%
TAAGGAACTCTTCTCGCCAG+TGG + chr1_2:76163442-76163461 None:intergenic 50.0%
! AAAGGCATGGTGTGCTTCCA+AGG - chr1_2:76163796-76163815 Msa0093420:intron 50.0%
AAGGCATGGTGTGCTTCCAA+GGG - chr1_2:76163797-76163816 Msa0093420:intron 50.0%
!! CTTTGAGACCTCTGCAAAGG+AGG - chr1_2:76163832-76163851 Msa0093420:intron 50.0%
CAAGAAGGACAAGTTGTCCC+AGG + chr1_2:76164433-76164452 None:intergenic 50.0%
! GATCTGGGATACTGCTGGTC+AGG - chr1_2:76163319-76163338 Msa0093420:intron 55.0%
! CTTGGTGTGGCTTTCTACCG+AGG - chr1_2:76163356-76163375 Msa0093420:intron 55.0%
GGACACAGCAATCTGCACCT+CGG + chr1_2:76163376-76163395 None:intergenic 55.0%
AGGCATGGTGTGCTTCCAAG+GGG - chr1_2:76163798-76163817 Msa0093420:intron 55.0%
! ACAATTGATGTCGGTGGCGG+TGG - chr1_2:76164274-76164293 Msa0093420:CDS 55.0%
GCGGCGAGAATGAGAAGCCA+TGG + chr1_2:76161637-76161656 None:intergenic 60.0%
GGGATACTGCTGGTCAGGAG+AGG - chr1_2:76163324-76163343 Msa0093420:intron 60.0%
! TTGATGTCGGTGGCGGTGGA+CGG - chr1_2:76164278-76164297 Msa0093420:CDS 60.0%
GGACGGCAACAGAGGTCAAC+AGG - chr1_2:76164295-76164314 Msa0093420:CDS 60.0%
GTGGCGGTGGACGGCAACAG+AGG - chr1_2:76164287-76164306 Msa0093420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 76161582 76164656 76161582 ID=Msa0093420;Name=Msa0093420
chr1_2 mRNA 76161582 76164656 76161582 ID=Msa0093420-mRNA-1;Parent=Msa0093420;Name=Msa0093420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=54|1|1|1|1|1|6|326|209
chr1_2 exon 76161582 76161977 76161582 ID=Msa0093420-mRNA-1:exon:26851;Parent=Msa0093420-mRNA-1
chr1_2 exon 76162314 76162459 76162314 ID=Msa0093420-mRNA-1:exon:26850;Parent=Msa0093420-mRNA-1
chr1_2 exon 76162603 76162683 76162603 ID=Msa0093420-mRNA-1:exon:26849;Parent=Msa0093420-mRNA-1
chr1_2 exon 76162772 76162918 76162772 ID=Msa0093420-mRNA-1:exon:26848;Parent=Msa0093420-mRNA-1
chr1_2 exon 76164265 76164391 76164265 ID=Msa0093420-mRNA-1:exon:26847;Parent=Msa0093420-mRNA-1
chr1_2 exon 76164544 76164656 76164544 ID=Msa0093420-mRNA-1:exon:26846;Parent=Msa0093420-mRNA-1
chr1_2 five_prime_UTR 76164603 76164656 76164603 ID=Msa0093420-mRNA-1:five_prime_utr;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76164544 76164602 76164544 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76164265 76164391 76164265 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76162772 76162918 76162772 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76162603 76162683 76162603 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76162314 76162459 76162314 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 CDS 76161908 76161977 76161908 ID=Msa0093420-mRNA-1:cds;Parent=Msa0093420-mRNA-1
chr1_2 three_prime_UTR 76161582 76161907 76161582 ID=Msa0093420-mRNA-1:three_prime_utr;Parent=Msa0093420-mRNA-1
Gene Sequence

>Msa0093420

ATGGCTTCTCATTCTCGCCGCCGCATGTTATTGAAAGTCATCATCCTCGGTGATAGTGGGGTTGGCAAAACATCACTCATGAATCAGTATGTGAATCGAAAGTTTAGTAATCAGTATAAGGCTACCATTGGTGCTGATTTCCTTACCAAGGAAGTTCAAGTTGAAGACAGGTTGTTCACATTGCAGATCTGGGATACTGCTGGTCAGGAGAGGTTTCAAAGTCTTGGTGTGGCTTTCTACCGAGGTGCAGATTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGAAAACCTTAACCACTGGCGAGAAGAGTTCCTTATTCAGGCTAGTCCATCTGATCCTGAAAACTTCCCATTTGTGGTGTTGGGAAACAAAGTAGATGTTGATGGTGGAAATAGCCGAGTTGTTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCCAAGGGGAATATACCATACTTTGAGACCTCTGCAAAGGAGGGTTTTAATGTTGAGGCTGCTTTTGAGTGTATTACCAAAAATGCTCTCAAGAATGAACCTGAAGAAGAATTATACATGCCAGAAACAATTGATGTCGGTGGCGGTGGACGGCAACAGAGGTCAACAGGCTGTGAATGTTGA
Protein sequence

>Msa0093420

MASHSRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQVEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFENLNHWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECITKNALKNEPEEELYMPETIDVGGGGRQQRSTGCEC*