Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279150 | XP_024628495.1 | 90.532 | 602 | 15 | 2 | 1 | 560 | 1 | 602 | 0.0 | 1114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279150 | sp|Q501H5|SFH13_ARATH | 51.411 | 638 | 219 | 22 | 1 | 560 | 1 | 625 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279150 | A0A396GKW2 | 90.532 | 602 | 15 | 2 | 1 | 560 | 1 | 602 | 0.0 | 1114 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025580 | Msa1279150 | 0.803006 | 4.282412e-49 | -8.615850e-47 |
| Msa0606100 | Msa1279150 | 0.816606 | 5.070401e-52 | -8.615850e-47 |
| Msa0607800 | Msa1279150 | 0.815461 | 9.134315e-52 | -8.615850e-47 |
| Msa0615630 | Msa1279150 | 0.805302 | 1.425261e-49 | -8.615850e-47 |
| Msa0621710 | Msa1279150 | 0.817304 | 3.534437e-52 | -8.615850e-47 |
| Msa0648040 | Msa1279150 | 0.804370 | 2.232302e-49 | -8.615850e-47 |
| Msa0658640 | Msa1279150 | 0.804565 | 2.032675e-49 | -8.615850e-47 |
| Msa0690740 | Msa1279150 | 0.801559 | 8.505873e-49 | -8.615850e-47 |
| Msa0703600 | Msa1279150 | 0.809913 | 1.496055e-50 | -8.615850e-47 |
| Msa0709200 | Msa1279150 | 0.809899 | 1.506372e-50 | -8.615850e-47 |
| Msa0709440 | Msa1279150 | 0.805382 | 1.371706e-49 | -8.615850e-47 |
| Msa0711400 | Msa1279150 | 0.821726 | 3.463661e-53 | -8.615850e-47 |
| Msa0743440 | Msa1279150 | 0.800305 | 1.533835e-48 | -8.615850e-47 |
| Msa0745720 | Msa1279150 | 0.807037 | 6.147384e-50 | -8.615850e-47 |
| Msa0757100 | Msa1279150 | 0.806497 | 7.994770e-50 | -8.615850e-47 |
| Msa0758650 | Msa1279150 | 0.800661 | 1.297957e-48 | -8.615850e-47 |
| Msa0773630 | Msa1279150 | 0.818514 | 1.883425e-52 | -8.615850e-47 |
| Msa0125210 | Msa1279150 | 0.816118 | 6.521017e-52 | -8.615850e-47 |
| Msa0126210 | Msa1279150 | 0.802337 | 5.884054e-49 | -8.615850e-47 |
| Msa0140280 | Msa1279150 | 0.828516 | 8.608761e-55 | -8.615850e-47 |
| Msa0213610 | Msa1279150 | 0.842180 | 3.026798e-58 | -8.615850e-47 |
| Msa1226520 | Msa1279150 | 0.803595 | 3.233925e-49 | -8.615850e-47 |
| Msa1234870 | Msa1279150 | 0.842389 | 2.664400e-58 | -8.615850e-47 |
| Msa1240770 | Msa1279150 | 0.801226 | 9.948356e-49 | -8.615850e-47 |
| Msa1252980 | Msa1279150 | 0.805602 | 1.233391e-49 | -8.615850e-47 |
| Msa1254540 | Msa1279150 | 0.815404 | 9.407293e-52 | -8.615850e-47 |
| Msa1279150 | Msa1290770 | 0.816424 | 5.569366e-52 | -8.615850e-47 |
| Msa1279150 | Msa1314980 | 0.865342 | 6.332698e-65 | -8.615850e-47 |
| Msa1279150 | Msa1315130 | 0.820578 | 6.371101e-53 | -8.615850e-47 |
| Msa1279150 | Msa1315160 | 0.813324 | 2.711005e-51 | -8.615850e-47 |
| Msa1279150 | Msa1332950 | 0.801932 | 7.128913e-49 | -8.615850e-47 |
| Msa1279150 | Msa1362130 | 0.807451 | 5.023613e-50 | -8.615850e-47 |
| Msa1279150 | Msa1371910 | 0.816281 | 5.995728e-52 | -8.615850e-47 |
| Msa1279150 | Msa1445120 | 0.805343 | 1.397797e-49 | -8.615850e-47 |
| Msa1279150 | Msa1450190 | 0.803345 | 3.644628e-49 | -8.615850e-47 |
| Msa1279150 | Msa1460720 | 0.800588 | 1.343224e-48 | -8.615850e-47 |
| Msa0380670 | Msa1279150 | 0.824607 | 7.365464e-54 | -8.615850e-47 |
| Msa0390970 | Msa1279150 | 0.818934 | 1.512782e-52 | -8.615850e-47 |
| Msa0419540 | Msa1279150 | 0.804514 | 2.082918e-49 | -8.615850e-47 |
| Msa0430300 | Msa1279150 | 0.817166 | 3.795833e-52 | -8.615850e-47 |
| Msa0430480 | Msa1279150 | 0.827082 | 1.903933e-54 | -8.615850e-47 |
| Msa0433150 | Msa1279150 | 0.800708 | 1.269591e-48 | -8.615850e-47 |
| Msa0481890 | Msa1279150 | 0.805113 | 1.561500e-49 | -8.615850e-47 |
| Msa0981320 | Msa1279150 | 0.818582 | 1.817917e-52 | -8.615850e-47 |
| Msa1003740 | Msa1279150 | 0.835199 | 1.928527e-56 | -8.615850e-47 |
| Msa1003800 | Msa1279150 | 0.835530 | 1.590467e-56 | -8.615850e-47 |
| Msa1003930 | Msa1279150 | 0.834351 | 3.151867e-56 | -8.615850e-47 |
| Msa1035610 | Msa1279150 | 0.803706 | 3.067930e-49 | -8.615850e-47 |
| Msa1042160 | Msa1279150 | 0.844449 | 7.506866e-59 | -8.615850e-47 |
| Msa1042190 | Msa1279150 | 0.845040 | 5.202129e-59 | -8.615850e-47 |
| Msa1078880 | Msa1279150 | 0.816476 | 5.423479e-52 | -8.615850e-47 |
| Msa1078970 | Msa1279150 | 0.803909 | 2.783484e-49 | -8.615850e-47 |
| Msa1080000 | Msa1279150 | 0.806384 | 8.443655e-50 | -8.615850e-47 |
| Msa1084530 | Msa1279150 | 0.811277 | 7.586917e-51 | -8.615850e-47 |
| Msa0293040 | Msa1279150 | 0.848517 | 5.829004e-60 | -8.615850e-47 |
| Msa0298500 | Msa1279150 | 0.808722 | 2.693117e-50 | -8.615850e-47 |
| Msa0301820 | Msa1279150 | 0.822099 | 2.838743e-53 | -8.615850e-47 |
| Msa1123210 | Msa1279150 | 0.821105 | 4.817434e-53 | -8.615850e-47 |
| Msa1125820 | Msa1279150 | 0.814886 | 1.225901e-51 | -8.615850e-47 |
| Msa1125990 | Msa1279150 | 0.811141 | 8.119378e-51 | -8.615850e-47 |
| Msa1127280 | Msa1279150 | 0.805737 | 1.155125e-49 | -8.615850e-47 |
| Msa1127470 | Msa1279150 | 0.808177 | 3.519747e-50 | -8.615850e-47 |
| Msa1132530 | Msa1279150 | 0.831384 | 1.721461e-55 | -8.615850e-47 |
| Msa1165480 | Msa1279150 | 0.802322 | 5.927094e-49 | -8.615850e-47 |
| Msa1167470 | Msa1279150 | 0.843238 | 1.584554e-58 | -8.615850e-47 |
| Msa1169190 | Msa1279150 | 0.818929 | 1.516381e-52 | -8.615850e-47 |
| Msa1171290 | Msa1279150 | 0.802226 | 6.203926e-49 | -8.615850e-47 |
| Msa1174670 | Msa1279150 | 0.840763 | 7.149283e-58 | -8.615850e-47 |
| Msa1186520 | Msa1279150 | 0.812963 | 3.254291e-51 | -8.615850e-47 |
| Msa1201540 | Msa1279150 | 0.800017 | 1.755535e-48 | -8.615850e-47 |
| Msa1215870 | Msa1279150 | 0.818014 | 2.445268e-52 | -8.615850e-47 |
| Msa1216090 | Msa1279150 | 0.802467 | 5.533499e-49 | -8.615850e-47 |
| Msa1223390 | Msa1279150 | 0.816180 | 6.316019e-52 | -8.615850e-47 |
| Msa0483910 | Msa1279150 | 0.835027 | 2.130275e-56 | -8.615850e-47 |
| Msa0484570 | Msa1279150 | 0.841933 | 3.518488e-58 | -8.615850e-47 |
| Msa0553750 | Msa1279150 | 0.810256 | 1.261647e-50 | -8.615850e-47 |
| Msa0561560 | Msa1279150 | 0.803930 | 2.755799e-49 | -8.615850e-47 |
| Msa0567170 | Msa1279150 | 0.816942 | 4.262095e-52 | -8.615850e-47 |
| Msa0863620 | Msa1279150 | 0.811587 | 6.496455e-51 | -8.615850e-47 |
| Msa0867110 | Msa1279150 | 0.806525 | 7.884168e-50 | -8.615850e-47 |
| Msa0931590 | Msa1279150 | 0.815190 | 1.049563e-51 | -8.615850e-47 |
| Msa0966320 | Msa1279150 | 0.800351 | 1.501392e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279150 | MtrunA17_Chr8g0369291 | 90.532 | 602 | 15 | 2 | 1 | 560 | 1 | 602 | 0.0 | 1114 |
| Msa1279150 | MtrunA17_Chr3g0080051 | 60.797 | 602 | 177 | 11 | 14 | 560 | 21 | 618 | 0.0 | 667 |
| Msa1279150 | MtrunA17_Chr1g0155521 | 40.262 | 611 | 280 | 16 | 14 | 560 | 31 | 620 | 5.23e-133 | 401 |
| Msa1279150 | MtrunA17_Chr4g0035391 | 37.585 | 588 | 296 | 13 | 29 | 560 | 43 | 615 | 2.92e-116 | 357 |
| Msa1279150 | MtrunA17_Chr7g0236461 | 38.821 | 577 | 259 | 15 | 34 | 552 | 39 | 579 | 5.17e-115 | 353 |
| Msa1279150 | MtrunA17_Chr3g0144911 | 48.462 | 390 | 148 | 7 | 14 | 353 | 30 | 416 | 9.92e-115 | 347 |
| Msa1279150 | MtrunA17_Chr3g0141821 | 39.086 | 591 | 276 | 13 | 14 | 554 | 13 | 569 | 3.64e-110 | 340 |
| Msa1279150 | MtrunA17_Chr5g0404711 | 45.588 | 340 | 134 | 7 | 29 | 319 | 12 | 349 | 8.48e-94 | 295 |
| Msa1279150 | MtrunA17_Chr3g0144891 | 33.273 | 556 | 282 | 15 | 33 | 541 | 37 | 550 | 6.25e-89 | 285 |
| Msa1279150 | MtrunA17_Chr4g0035361 | 35.000 | 500 | 229 | 15 | 91 | 541 | 2 | 454 | 7.97e-83 | 266 |
| Msa1279150 | MtrunA17_Chr8g0372651 | 46.831 | 284 | 105 | 5 | 59 | 297 | 45 | 327 | 1.25e-82 | 268 |
| Msa1279150 | MtrunA17_Chr5g0399151 | 41.176 | 306 | 132 | 8 | 30 | 290 | 54 | 356 | 5.67e-68 | 226 |
| Msa1279150 | MtrunA17_Chr4g0035381 | 44.898 | 245 | 94 | 2 | 81 | 284 | 75 | 319 | 6.95e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279150 | AT1G55690.2 | 51.411 | 638 | 219 | 22 | 1 | 560 | 1 | 625 | 0.0 | 561 |
| Msa1279150 | AT1G55690.4 | 51.411 | 638 | 219 | 22 | 1 | 560 | 1 | 625 | 0.0 | 561 |
| Msa1279150 | AT1G55690.1 | 51.411 | 638 | 219 | 22 | 1 | 560 | 1 | 625 | 0.0 | 561 |
| Msa1279150 | AT1G55690.5 | 51.411 | 638 | 219 | 22 | 1 | 560 | 1 | 625 | 0.0 | 561 |
| Msa1279150 | AT1G55690.3 | 51.027 | 633 | 220 | 21 | 1 | 556 | 1 | 620 | 0.0 | 551 |
| Msa1279150 | AT5G56160.1 | 42.880 | 618 | 252 | 12 | 1 | 560 | 1 | 575 | 5.70e-158 | 464 |
| Msa1279150 | AT5G56160.3 | 42.880 | 618 | 252 | 12 | 1 | 560 | 1 | 575 | 5.70e-158 | 464 |
| Msa1279150 | AT5G56160.2 | 56.433 | 342 | 103 | 4 | 1 | 296 | 1 | 342 | 2.07e-130 | 390 |
| Msa1279150 | AT4G39170.1 | 38.880 | 607 | 288 | 15 | 14 | 560 | 30 | 613 | 8.11e-130 | 393 |
| Msa1279150 | AT3G24840.7 | 41.596 | 589 | 242 | 20 | 14 | 551 | 23 | 560 | 4.24e-128 | 387 |
| Msa1279150 | AT3G24840.3 | 41.596 | 589 | 242 | 20 | 14 | 551 | 23 | 560 | 4.24e-128 | 387 |
| Msa1279150 | AT3G24840.5 | 41.596 | 589 | 242 | 20 | 14 | 551 | 23 | 560 | 4.24e-128 | 387 |
| Msa1279150 | AT4G39170.2 | 38.880 | 607 | 286 | 16 | 14 | 560 | 30 | 611 | 6.26e-128 | 388 |
| Msa1279150 | AT3G24840.1 | 41.297 | 586 | 247 | 19 | 14 | 551 | 23 | 559 | 5.65e-127 | 384 |
| Msa1279150 | AT3G24840.6 | 41.297 | 586 | 247 | 19 | 14 | 551 | 23 | 559 | 5.65e-127 | 384 |
| Msa1279150 | AT3G24840.4 | 41.297 | 586 | 247 | 19 | 14 | 551 | 23 | 559 | 5.65e-127 | 384 |
| Msa1279150 | AT3G24840.2 | 41.297 | 586 | 247 | 19 | 14 | 551 | 23 | 559 | 5.65e-127 | 384 |
| Msa1279150 | AT2G21520.1 | 37.903 | 620 | 295 | 14 | 14 | 560 | 30 | 632 | 6.49e-125 | 380 |
| Msa1279150 | AT2G21520.2 | 37.903 | 620 | 295 | 14 | 14 | 560 | 34 | 636 | 8.64e-125 | 380 |
| Msa1279150 | AT2G21520.3 | 37.903 | 620 | 295 | 14 | 14 | 560 | 34 | 636 | 8.64e-125 | 380 |
| Msa1279150 | AT4G39180.1 | 46.154 | 351 | 140 | 7 | 11 | 315 | 15 | 362 | 2.01e-101 | 317 |
| Msa1279150 | AT4G39180.3 | 46.154 | 351 | 140 | 7 | 11 | 315 | 15 | 362 | 2.30e-101 | 317 |
| Msa1279150 | AT4G39180.2 | 46.154 | 351 | 140 | 7 | 11 | 315 | 15 | 362 | 2.30e-101 | 317 |
| Msa1279150 | AT1G19650.1 | 36.788 | 579 | 287 | 15 | 40 | 560 | 50 | 607 | 2.78e-100 | 316 |
| Msa1279150 | AT2G21540.3 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 4.80e-100 | 313 |
| Msa1279150 | AT2G21540.5 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 4.80e-100 | 313 |
| Msa1279150 | AT2G21540.6 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 5.04e-100 | 313 |
| Msa1279150 | AT2G21540.2 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 5.04e-100 | 313 |
| Msa1279150 | AT2G21540.1 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 5.04e-100 | 313 |
| Msa1279150 | AT2G21540.4 | 46.784 | 342 | 132 | 7 | 11 | 306 | 15 | 352 | 5.04e-100 | 313 |
| Msa1279150 | AT4G34580.2 | 46.197 | 355 | 132 | 9 | 12 | 319 | 7 | 349 | 2.32e-98 | 310 |
| Msa1279150 | AT4G34580.1 | 46.197 | 355 | 132 | 9 | 12 | 319 | 7 | 349 | 2.32e-98 | 310 |
| Msa1279150 | AT1G75370.1 | 33.910 | 578 | 299 | 15 | 42 | 560 | 58 | 611 | 2.70e-94 | 301 |
| Msa1279150 | AT1G75370.2 | 34.251 | 581 | 296 | 16 | 42 | 560 | 58 | 614 | 3.81e-93 | 299 |
| Msa1279150 | AT2G18180.2 | 47.284 | 313 | 116 | 5 | 21 | 288 | 12 | 320 | 9.97e-93 | 295 |
| Msa1279150 | AT2G18180.1 | 47.284 | 313 | 116 | 5 | 21 | 288 | 12 | 320 | 1.13e-92 | 295 |
| Msa1279150 | AT2G16380.2 | 46.933 | 326 | 125 | 6 | 14 | 293 | 9 | 332 | 2.95e-92 | 293 |
| Msa1279150 | AT2G16380.1 | 46.933 | 326 | 125 | 6 | 14 | 293 | 9 | 332 | 2.95e-92 | 293 |
| Msa1279150 | AT4G36490.1 | 47.267 | 311 | 116 | 5 | 23 | 288 | 10 | 317 | 6.02e-92 | 292 |
| Msa1279150 | AT1G19650.3 | 45.152 | 361 | 143 | 9 | 40 | 350 | 50 | 405 | 8.00e-91 | 286 |
| Msa1279150 | AT1G19650.2 | 36.174 | 528 | 265 | 14 | 85 | 560 | 28 | 535 | 1.10e-89 | 286 |
| Msa1279150 | AT2G18180.4 | 51.867 | 241 | 73 | 3 | 90 | 288 | 10 | 249 | 5.14e-83 | 267 |
| Msa1279150 | AT2G18180.3 | 51.867 | 241 | 73 | 3 | 90 | 288 | 10 | 249 | 5.91e-83 | 267 |
| Msa1279150 | AT2G18180.5 | 51.121 | 223 | 66 | 3 | 108 | 288 | 1 | 222 | 1.33e-74 | 244 |
| Msa1279150 | AT2G16380.3 | 50.224 | 223 | 77 | 3 | 99 | 293 | 11 | 227 | 3.24e-73 | 240 |
| Msa1279150 | AT5G47510.2 | 44.231 | 260 | 99 | 4 | 68 | 282 | 26 | 284 | 4.75e-68 | 224 |
| Msa1279150 | AT5G47510.1 | 42.910 | 268 | 107 | 4 | 60 | 282 | 17 | 283 | 1.13e-67 | 224 |
| Msa1279150 | AT5G47510.4 | 42.910 | 268 | 107 | 4 | 60 | 282 | 18 | 284 | 1.30e-67 | 224 |
| Msa1279150 | AT5G47510.3 | 44.493 | 227 | 83 | 3 | 98 | 282 | 2 | 227 | 1.07e-60 | 204 |
Find 125 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGTTTAGGATTAGAATTT+TGG | 0.179579 | 8_3:+16004634 | Msa1279150:CDS |
| CTAAATGCAAGCTCATTTAT+TGG | 0.191638 | 8_3:+16005409 | Msa1279150:three_prime_UTR |
| GCCATTGCAAAATGATGATA+TGG | 0.233525 | 8_3:+16003722 | Msa1279150:CDS |
| ATTATTACCTTCATTATATT+AGG | 0.241279 | 8_3:-16002950 | None:intergenic |
| ACTAAGTTTCCTTTGTCTAA+TGG | 0.270733 | 8_3:-16003460 | None:intergenic |
| GGAAAAGCAAAATTGATTAT+AGG | 0.271718 | 8_3:+16000020 | Msa1279150:CDS |
| CAGGCACTTCGATCAGAAAT+TGG | 0.276437 | 8_3:+16004517 | Msa1279150:intron |
| AAGTGTGCTGATATATCTTT+TGG | 0.288321 | 8_3:+16004590 | Msa1279150:CDS |
| GAAAATGCTTATGAGCTCTT+TGG | 0.319819 | 8_3:+16004830 | Msa1279150:CDS |
| CATTCAGATGTGGGAAGATA+TGG | 0.327257 | 8_3:+16000290 | Msa1279150:CDS |
| CATATATTCTTCCACAGTTT+AGG | 0.327780 | 8_3:+16004621 | Msa1279150:CDS |
| GATGGTCCTCTATTTAGATT+TGG | 0.329211 | 8_3:+16005614 | Msa1279150:three_prime_UTR |
| TCAATGCTGGTCCTGGCTTT+AGG | 0.333637 | 8_3:+16002460 | Msa1279150:CDS |
| CTGGAGAAGGTGGATGTCTT+AGG | 0.352798 | 8_3:+16002903 | Msa1279150:CDS |
| CCAAGCCTCTCGATGTAAAC+TGG | 0.368726 | 8_3:-16002004 | None:intergenic |
| GGTGGCTCGTGTAAATGTTC+TGG | 0.379514 | 8_3:+16002884 | Msa1279150:CDS |
| AGCTGTAAAGATAATGCTTC+TGG | 0.386054 | 8_3:+16003651 | Msa1279150:CDS |
| CTGGCTTTAGGAAGATGCTT+TGG | 0.391128 | 8_3:+16002472 | Msa1279150:CDS |
| TCATTAATCATTACTATGTC+AGG | 0.395677 | 8_3:+15999767 | Msa1279150:exon |
| TTAGTAAGAGCGAGATTTGA+AGG | 0.396950 | 8_3:-16005562 | None:intergenic |
| GCATTTGTACAGTCAATTGC+CGG | 0.407328 | 8_3:+16002853 | Msa1279150:intron |
| GTAGTGGAGAGTGGAGAGAA+GGG | 0.411847 | 8_3:-15999638 | None:intergenic |
| TTTGTAGGTGTGTTTGAAAA+TGG | 0.413464 | 8_3:-16003134 | None:intergenic |
| TCATCTCTATCATCTTCAAT+TGG | 0.419200 | 8_3:-16000046 | None:intergenic |
| AAATTGGTTCGGCTTTGTTA+AGG | 0.430507 | 8_3:+16004533 | Msa1279150:CDS |
| TGGATGTCTTAGGTCTAGTA+AGG | 0.439716 | 8_3:+16002913 | Msa1279150:CDS |
| TGCTGAAATACCTATGGAAA+AGG | 0.448737 | 8_3:+16004806 | Msa1279150:CDS |
| AAACACTAAATTACAAAGGA+TGG | 0.449467 | 8_3:+16005679 | Msa1279150:three_prime_UTR |
| GTAGAGCTCTCTCGAACTCC+TGG | 0.454796 | 8_3:-16002090 | None:intergenic |
| AGAGAGAGAGAATAATGGTT+TGG | 0.456369 | 8_3:-15999602 | None:intergenic |
| TAGGTATTTCAGCAGGTCTA+TGG | 0.457287 | 8_3:-16004797 | None:intergenic |
| TGTAGTGGAGAGTGGAGAGA+AGG | 0.459599 | 8_3:-15999639 | None:intergenic |
| TCATTTATTGGACCCACAAA+AGG | 0.462330 | 8_3:+16005421 | Msa1279150:three_prime_UTR |
| ACCTACTGCTGCGAATCTCT+TGG | 0.474183 | 8_3:+16002289 | Msa1279150:CDS |
| TAGTAAGAGCGAGATTTGAA+GGG | 0.474837 | 8_3:-16005561 | None:intergenic |
| ATATGTCAACAGCAGAATCT+TGG | 0.477577 | 8_3:+16003412 | Msa1279150:CDS |
| AGGTTATCATGGAGTTGATA+AGG | 0.479015 | 8_3:+16001973 | Msa1279150:CDS |
| CCAGTTTACATCGAGAGGCT+TGG | 0.480433 | 8_3:+16002004 | Msa1279150:CDS |
| TATTACCCTCAAGGTTATCA+TGG | 0.482317 | 8_3:+16001962 | Msa1279150:CDS |
| TATATCGTCAATGCTGGTCC+TGG | 0.487761 | 8_3:+16002453 | Msa1279150:CDS |
| TCTGTTCATCGGAAACTTTG+AGG | 0.488990 | 8_3:-16003104 | None:intergenic |
| GTGTGATAATGATCATGATT+AGG | 0.489636 | 8_3:-16000121 | None:intergenic |
| CAAAGCATCTTCCTAAAGCC+AGG | 0.490122 | 8_3:-16002471 | None:intergenic |
| TGAAGACGTTCTTGTATACA+TGG | 0.496252 | 8_3:-16004744 | None:intergenic |
| TCAAGAAACTTCTGAGCAGC+AGG | 0.496593 | 8_3:-16002495 | None:intergenic |
| TAGACCTGCTGAAATACCTA+TGG | 0.498563 | 8_3:+16004800 | Msa1279150:CDS |
| ACTTCGATCAGAAATTGGTT+CGG | 0.501529 | 8_3:+16004522 | Msa1279150:CDS |
| CCATTGCAAAATGATGATAT+GGG | 0.501678 | 8_3:+16003723 | Msa1279150:CDS |
| CAACTCCATGATAACCTTGA+GGG | 0.508319 | 8_3:-16001967 | None:intergenic |
| AATATTAGATGTACATGGCT+TGG | 0.512053 | 8_3:+16002171 | Msa1279150:CDS |
| AAGCATTATCTTTACAGCTA+CGG | 0.514810 | 8_3:-16003647 | None:intergenic |
| CATATCTTCCCACATCTGAA+TGG | 0.524751 | 8_3:-16000289 | None:intergenic |
| CACTGTCCAAATCTAAATAG+AGG | 0.525238 | 8_3:-16005620 | None:intergenic |
| AGTATAGAGAATAACCCTCT+TGG | 0.533030 | 8_3:-16004889 | None:intergenic |
| GAATGATCCTAATATAATGA+AGG | 0.534117 | 8_3:+16002943 | Msa1279150:CDS |
| TTTGGGGTGGAAGGACTAGC+CGG | 0.538584 | 8_3:-16005774 | None:intergenic |
| AATCCATCGCTTTGATGCAA+TGG | 0.539148 | 8_3:-16002134 | None:intergenic |
| CAAATGTATATCGTCAATGC+TGG | 0.541743 | 8_3:+16002447 | Msa1279150:CDS |
| AACACTAAATTACAAAGGAT+GGG | 0.543472 | 8_3:+16005680 | Msa1279150:three_prime_UTR |
| AGTAAGAGCGAGATTTGAAG+GGG | 0.547056 | 8_3:-16005560 | None:intergenic |
| TTAGGTCTAGTAAGGGTCCA+TGG | 0.548901 | 8_3:+16002921 | Msa1279150:CDS |
| TGCTTATGAGCTCTTTGGAT+AGG | 0.551453 | 8_3:+16004835 | Msa1279150:CDS |
| AGATGATAGAGATGAACAAG+AGG | 0.552908 | 8_3:+16000054 | Msa1279150:CDS |
| TGTCAAAACACCTTCTGAAG+AGG | 0.553214 | 8_3:+16004710 | Msa1279150:CDS |
| TAAGAAGGTCAAGAATAAGA+AGG | 0.555650 | 8_3:+15999936 | Msa1279150:CDS |
| ACCACATTATGACAAAATCA+AGG | 0.557940 | 8_3:+16005723 | Msa1279150:three_prime_UTR |
| TGAGTAGTTGTTATCACCAC+AGG | 0.558230 | 8_3:+16005378 | Msa1279150:three_prime_UTR |
| CAGAAGAAGAGAGATTAAGA+AGG | 0.562345 | 8_3:+15999921 | Msa1279150:CDS |
| ATTATATTAGGATCATTCCA+TGG | 0.564352 | 8_3:-16002938 | None:intergenic |
| CTCTCTCGAACTCCTGGACA+TGG | 0.567372 | 8_3:-16002084 | None:intergenic |
| GCCGACCAGTTTACATCGAG+AGG | 0.569512 | 8_3:+16001999 | Msa1279150:CDS |
| CCATAGAGAAAACATAGGGA+TGG | 0.571456 | 8_3:+16005492 | Msa1279150:three_prime_UTR |
| TCATTTACATAGAGAAACAT+AGG | 0.573084 | 8_3:+16005586 | Msa1279150:three_prime_UTR |
| GCATTTAGTATTGTCTCCTG+TGG | 0.574944 | 8_3:-16005394 | None:intergenic |
| ATATTTAAAATACCATGTCC+AGG | 0.575974 | 8_3:+16002072 | Msa1279150:CDS |
| AACAAAGATGTTGTGTTGTG+TGG | 0.577161 | 8_3:-15999677 | None:intergenic |
| GCTCCATTGCATCAAAGCGA+TGG | 0.582925 | 8_3:+16002131 | Msa1279150:CDS |
| TTGAGAAGACCATTCAGATG+TGG | 0.587288 | 8_3:+16000280 | Msa1279150:CDS |
| CTTGATGCGCATAACCACAA+TGG | 0.587615 | 8_3:+16002045 | Msa1279150:CDS |
| GTGTCCATAGAGAAAACATA+GGG | 0.588678 | 8_3:+16005488 | Msa1279150:three_prime_UTR |
| TGAGATACTGTAGTGGAGAG+TGG | 0.589168 | 8_3:-15999647 | None:intergenic |
| AGTGTCCATAGAGAAAACAT+AGG | 0.590537 | 8_3:+16005487 | Msa1279150:three_prime_UTR |
| ATTGGACCCACAAAAGGCTG+AGG | 0.592411 | 8_3:+16005427 | Msa1279150:three_prime_UTR |
| CATTCTCTCAAGAAAACAAG+AGG | 0.592966 | 8_3:+15999998 | Msa1279150:CDS |
| TTAGTTTGTTCATAATGTGG+AGG | 0.594499 | 8_3:+16003062 | Msa1279150:intron |
| GAGAACACAAAACAATATTG+TGG | 0.594851 | 8_3:+16004656 | Msa1279150:CDS |
| CATAGAGAAAACATAGGGAT+GGG | 0.594853 | 8_3:+16005493 | Msa1279150:three_prime_UTR |
| GTATTGCAATATTACCCTCA+AGG | 0.595104 | 8_3:+16001953 | Msa1279150:CDS |
| TAGATTTGGACAGTGTGGAG+AGG | 0.597314 | 8_3:+16005628 | Msa1279150:three_prime_UTR |
| CTATTTAGATTTGGACAGTG+TGG | 0.598345 | 8_3:+16005623 | Msa1279150:three_prime_UTR |
| TGAGAAGACCATTCAGATGT+GGG | 0.599172 | 8_3:+16000281 | Msa1279150:CDS |
| CTTGCTCATCCATTAGACAA+AGG | 0.599828 | 8_3:+16003451 | Msa1279150:CDS |
| AGATCAATTTCAATTTACAC+AGG | 0.609250 | 8_3:+16003695 | Msa1279150:CDS |
| ATCATTATCACACACTCTTG+AGG | 0.610477 | 8_3:+16000131 | Msa1279150:CDS |
| TTTGATGCAATGGAGCATGC+TGG | 0.613304 | 8_3:-16002124 | None:intergenic |
| AGAGAAACATAGGTATGAGA+TGG | 0.615039 | 8_3:+16005596 | Msa1279150:three_prime_UTR |
| ACCCACAAAAGGCTGAGGCA+AGG | 0.617538 | 8_3:+16005432 | Msa1279150:three_prime_UTR |
| AACACAAAACAATATTGTGG+TGG | 0.618764 | 8_3:+16004659 | Msa1279150:CDS |
| TCGTGTAAATGTTCTGGAGA+AGG | 0.622712 | 8_3:+16002890 | Msa1279150:CDS |
| GCCTCTCGATGTAAACTGGT+CGG | 0.622982 | 8_3:-16002000 | None:intergenic |
| TCAACTCCATGATAACCTTG+AGG | 0.626407 | 8_3:-16001968 | None:intergenic |
| ATGTACATCTAATATTGTTG+TGG | 0.630684 | 8_3:-16002164 | None:intergenic |
| CGACCTTGAAAATACCAAGA+GGG | 0.632338 | 8_3:+16004875 | Msa1279150:CDS |
| GTTATGCGCATCAAGCGGCT+AGG | 0.632760 | 8_3:-16002037 | None:intergenic |
| AGAATACGATCCTCTTCAGA+AGG | 0.634299 | 8_3:-16004720 | None:intergenic |
| AAAATTCTAATCCTAAACTG+TGG | 0.639752 | 8_3:-16004632 | None:intergenic |
| AAACAAACACTAAATTACAA+AGG | 0.639956 | 8_3:+16005675 | Msa1279150:three_prime_UTR |
| TATCATGGAGTTGATAAGGA+AGG | 0.642212 | 8_3:+16001977 | Msa1279150:CDS |
| GGATGTCTTAGGTCTAGTAA+GGG | 0.644267 | 8_3:+16002914 | Msa1279150:CDS |
| TTGTGGTTATGCGCATCAAG+CGG | 0.644616 | 8_3:-16002042 | None:intergenic |
| TGATAATGATCATGATTAGG+AGG | 0.646729 | 8_3:-16000118 | None:intergenic |
| ACAACAATATTAGATGTACA+TGG | 0.648869 | 8_3:+16002166 | Msa1279150:CDS |
| TGTAAATGTTCTGGAGAAGG+TGG | 0.649720 | 8_3:+16002893 | Msa1279150:CDS |
| ATTCTCTCAAGAAAACAAGA+GGG | 0.654597 | 8_3:+15999999 | Msa1279150:CDS |
| CATTGCAAAATGATGATATG+GGG | 0.660842 | 8_3:+16003724 | Msa1279150:CDS |
| GCCAAGAGATTCGCAGCAGT+AGG | 0.663082 | 8_3:-16002290 | None:intergenic |
| ATCTCACTGAGATACTGTAG+TGG | 0.667356 | 8_3:-15999654 | None:intergenic |
| CACTTCTTCATGATCAACTG+AGG | 0.669464 | 8_3:-16003496 | None:intergenic |
| ACTTGTACAGAGAATTCCAA+AGG | 0.675982 | 8_3:+16003753 | Msa1279150:CDS |
| GGCTGAGGCAAGGAATGACA+CGG | 0.676742 | 8_3:+16005442 | Msa1279150:three_prime_UTR |
| TGAGCTACTAGAGAATCTGA+AGG | 0.697572 | 8_3:+16005019 | Msa1279150:CDS |
| TGATCAACTGAGGCTAAACG+AGG | 0.699460 | 8_3:-16003486 | None:intergenic |
| ATGTTGTAAAATGAAAATGT+CGG | 0.713873 | 8_3:-15999740 | None:intergenic |
| TCGACCTTGAAAATACCAAG+AGG | 0.727189 | 8_3:+16004874 | Msa1279150:CDS |
| AGATAACAGTTACTACCCCG+AGG | 0.730209 | 8_3:+16002328 | Msa1279150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATAAATTAATTCTATTTTA+TGG | - | chr8_3:16001083-16001102 | None:intergenic | 10.0% |
| !!! | TTTTTCAATAATCTTAATTT+GGG | + | chr8_3:16003810-16003829 | Msa1279150:intron | 10.0% |
| !! | TAATAAATAGTACTTATATT+CGG | - | chr8_3:16005143-16005162 | None:intergenic | 10.0% |
| !! | GTGAAATTTATTTATATTTA+CGG | + | chr8_3:16005265-16005284 | Msa1279150:intron | 10.0% |
| !!! | ATTACAATTTTGATTAATGT+TGG | + | chr8_3:16000521-16000540 | Msa1279150:intron | 15.0% |
| !!! | TATTATGTTGATTGTTAATT+TGG | + | chr8_3:16000620-16000639 | Msa1279150:intron | 15.0% |
| !!! | AAATTAATTCTATTTTATGG+AGG | - | chr8_3:16001080-16001099 | None:intergenic | 15.0% |
| !!! | AGTCTTATTCAAAATTTAAA+AGG | + | chr8_3:16001122-16001141 | Msa1279150:intron | 15.0% |
| !!! | ATATTTATTGATTATAGTAC+TGG | + | chr8_3:16001241-16001260 | Msa1279150:intron | 15.0% |
| !!! | ATACAACATTTTTATTGATT+AGG | - | chr8_3:16002229-16002248 | None:intergenic | 15.0% |
| !!! | AATTGACGTTATTTTAATTT+GGG | - | chr8_3:16002371-16002390 | None:intergenic | 15.0% |
| !!! | AAATTGACGTTATTTTAATT+TGG | - | chr8_3:16002372-16002391 | None:intergenic | 15.0% |
| !! | TGTAATTTAAATAAAGACTT+TGG | - | chr8_3:16002742-16002761 | None:intergenic | 15.0% |
| !! | ATTATTACCTTCATTATATT+AGG | - | chr8_3:16002953-16002972 | None:intergenic | 15.0% |
| !! | TAATATAATGAAGGTAATAA+TGG | + | chr8_3:16002952-16002971 | Msa1279150:intron | 15.0% |
| !! | GATGATATAATTTACTAATT+TGG | + | chr8_3:16003215-16003234 | Msa1279150:intron | 15.0% |
| !!! | GTTTTTCAATAATCTTAATT+TGG | + | chr8_3:16003809-16003828 | Msa1279150:intron | 15.0% |
| !!! | TTTTCTTTTTTTTTTTACTC+CGG | + | chr8_3:16005755-16005774 | Msa1279150:three_prime_UTR | 15.0% |
| !! | ATGTTGTAAAATGAAAATGT+CGG | - | chr8_3:15999743-15999762 | None:intergenic | 20.0% |
| !! | TTGAAATGTGATATGAAAAT+AGG | + | chr8_3:15999860-15999879 | Msa1279150:intron | 20.0% |
| !! | TGAAATGTGATATGAAAATA+GGG | + | chr8_3:15999861-15999880 | Msa1279150:intron | 20.0% |
| !!! | TCTCTTTCTATTTTCTTAAA+AGG | + | chr8_3:16000362-16000381 | Msa1279150:intron | 20.0% |
| !! | AGACACAAAAAAATTAATGA+TGG | + | chr8_3:16000691-16000710 | Msa1279150:intron | 20.0% |
| !! | ACAAAAAAATTAATGATGGT+GGG | + | chr8_3:16000695-16000714 | Msa1279150:intron | 20.0% |
| !! | ATGGTTAGAAAATGAATATA+AGG | - | chr8_3:16000870-16000889 | None:intergenic | 20.0% |
| !! | ATGAGTTTAATGAACTAAAA+TGG | - | chr8_3:16000889-16000908 | None:intergenic | 20.0% |
| !!! | AGTAATTAATTTTGTTGCAT+TGG | + | chr8_3:16000969-16000988 | Msa1279150:intron | 20.0% |
| !! | AATTCTCATGATTTAGTTAA+AGG | - | chr8_3:16001000-16001019 | None:intergenic | 20.0% |
| !! | ATAATTGTAGAACATTTATG+AGG | - | chr8_3:16001301-16001320 | None:intergenic | 20.0% |
| !! | TTGATTGTAGAACATTTAAT+AGG | - | chr8_3:16001339-16001358 | None:intergenic | 20.0% |
| !! | TATATACAAGTTTAACTCAA+TGG | + | chr8_3:16001783-16001802 | Msa1279150:intron | 20.0% |
| !!! | TATATATTTTAACTTGTTGC+TGG | + | chr8_3:16002551-16002570 | Msa1279150:intron | 20.0% |
| !! | AATATAATGTAGTATGATGA+AGG | - | chr8_3:16002796-16002815 | None:intergenic | 20.0% |
| !!! | ACATTATATTTCTATTGAGA+TGG | + | chr8_3:16002806-16002825 | Msa1279150:intron | 20.0% |
| !!! | ATTTTAGTTTGTTCATAATG+TGG | + | chr8_3:16003059-16003078 | Msa1279150:intron | 20.0% |
| !! | GTAATTGTATATTTGCATAT+AGG | - | chr8_3:16003347-16003366 | None:intergenic | 20.0% |
| !!! | AGATAAAACAGTATTTTGAA+TGG | - | chr8_3:16003603-16003622 | None:intergenic | 20.0% |
| !!! | TATTTTGTAACATTTGAAAG+TGG | + | chr8_3:16003985-16004004 | Msa1279150:intron | 20.0% |
| !!! | ACAATTGACAAATATTTTTG+GGG | - | chr8_3:16004068-16004087 | None:intergenic | 20.0% |
| !!! | CACAATTGACAAATATTTTT+GGG | - | chr8_3:16004069-16004088 | None:intergenic | 20.0% |
| !!! | ACACAATTGACAAATATTTT+TGG | - | chr8_3:16004070-16004089 | None:intergenic | 20.0% |
| !! | CATCAAAATGTTACAAAATA+AGG | - | chr8_3:16004312-16004331 | None:intergenic | 20.0% |
| !!! | TATTTTGTAACATTTTGATG+TGG | + | chr8_3:16004312-16004331 | Msa1279150:intron | 20.0% |
| !!! | CAAATTCTCATATTTTTTAC+AGG | + | chr8_3:16004498-16004517 | Msa1279150:intron | 20.0% |
| !!! | AATTTTTTGTAATATGATGC+AGG | + | chr8_3:16004959-16004978 | Msa1279150:intron | 20.0% |
| !! | TCATAAAAAATGTGTATTCT+AGG | + | chr8_3:16005185-16005204 | Msa1279150:intron | 20.0% |
| !! | AAACAAACACTAAATTACAA+AGG | + | chr8_3:16005675-16005694 | Msa1279150:three_prime_UTR | 20.0% |
| ! | TCATTAATCATTACTATGTC+AGG | + | chr8_3:15999767-15999786 | Msa1279150:exon | 25.0% |
| ! | GAAATGTGATATGAAAATAG+GGG | + | chr8_3:15999862-15999881 | Msa1279150:intron | 25.0% |
| ! | GGAAAAGCAAAATTGATTAT+AGG | + | chr8_3:16000020-16000039 | Msa1279150:CDS | 25.0% |
| !!! | GAGCATTTTGGTTTATTATT+AGG | + | chr8_3:16000232-16000251 | Msa1279150:intron | 25.0% |
| !!! | TTATTAGGTTTTTGAAAGCA+AGG | + | chr8_3:16000247-16000266 | Msa1279150:intron | 25.0% |
| !!! | TATTAGGTTTTTGAAAGCAA+GGG | + | chr8_3:16000248-16000267 | Msa1279150:intron | 25.0% |
| !! | ATTTCACCATTTTCCAAAAT+TGG | + | chr8_3:16000410-16000429 | Msa1279150:intron | 25.0% |
| ! | TTGACATATTATCTTGATGA+TGG | - | chr8_3:16000554-16000573 | None:intergenic | 25.0% |
| ! | CACAAAAAAATTAATGATGG+TGG | + | chr8_3:16000694-16000713 | Msa1279150:intron | 25.0% |
| ! | CAAATGGAACAAATAACAAA+TGG | + | chr8_3:16000779-16000798 | Msa1279150:intron | 25.0% |
| !!! | GTTGATTTGTTGACTAATTT+GGG | - | chr8_3:16000848-16000867 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTTGCTTGTAGTA+CGG | + | chr8_3:16001207-16001226 | Msa1279150:intron | 25.0% |
| !!! | ATCTTAGCTTTTTTTAGATC+AGG | - | chr8_3:16001394-16001413 | None:intergenic | 25.0% |
| ! | AAAGCTAAGATTAATGTCTA+TGG | + | chr8_3:16001403-16001422 | Msa1279150:intron | 25.0% |
| ! | AGAATATGCTAAACATTGTA+GGG | - | chr8_3:16001452-16001471 | None:intergenic | 25.0% |
| ! | AAGAATATGCTAAACATTGT+AGG | - | chr8_3:16001453-16001472 | None:intergenic | 25.0% |
| ! | AGCATATTCTTAGAAAAGTA+TGG | + | chr8_3:16001462-16001481 | Msa1279150:intron | 25.0% |
| ! | GAGCATTAAATTAGAGTAAT+TGG | + | chr8_3:16001494-16001513 | Msa1279150:intron | 25.0% |
| ! | CTCTAAATTTCATCATTAAC+AGG | + | chr8_3:16001522-16001541 | Msa1279150:intron | 25.0% |
| ! | TATACACACTCTTCAAAAAT+TGG | + | chr8_3:16001640-16001659 | Msa1279150:intron | 25.0% |
| !! | AAAGGAAGTTTTGCAATTAA+AGG | + | chr8_3:16001757-16001776 | Msa1279150:intron | 25.0% |
| !! | AAGGAAGTTTTGCAATTAAA+GGG | + | chr8_3:16001758-16001777 | Msa1279150:intron | 25.0% |
| ! | ATGTATCTGATGATATTTGA+AGG | + | chr8_3:16001904-16001923 | Msa1279150:intron | 25.0% |
| !! | TTTTAAATATCGATCCATTG+TGG | - | chr8_3:16002062-16002081 | None:intergenic | 25.0% |
| !! | ATATTTAAAATACCATGTCC+AGG | + | chr8_3:16002072-16002091 | Msa1279150:CDS | 25.0% |
| ! | ATGTACATCTAATATTGTTG+TGG | - | chr8_3:16002167-16002186 | None:intergenic | 25.0% |
| ! | ACAACAATATTAGATGTACA+TGG | + | chr8_3:16002166-16002185 | Msa1279150:CDS | 25.0% |
| ! | ATAATGTCATGTGTAATACA+GGG | + | chr8_3:16002251-16002270 | Msa1279150:intron | 25.0% |
| !!! | ACGTTATTTTAATTTGGGAA+GGG | - | chr8_3:16002366-16002385 | None:intergenic | 25.0% |
| ! | ACATGTATCAGGTTTAAATT+TGG | - | chr8_3:16002636-16002655 | None:intergenic | 25.0% |
| !! | CTTTTTGCTTATATTTACAG+AGG | + | chr8_3:16002659-16002678 | Msa1279150:intron | 25.0% |
| !! | CATTACTTTCATGAATTTTC+AGG | + | chr8_3:16002708-16002727 | Msa1279150:intron | 25.0% |
| ! | ATTATATTAGGATCATTCCA+TGG | - | chr8_3:16002941-16002960 | None:intergenic | 25.0% |
| ! | GAATGATCCTAATATAATGA+AGG | + | chr8_3:16002943-16002962 | Msa1279150:CDS | 25.0% |
| !! | CAACTCTTTTTGACAATAAA+TGG | + | chr8_3:16003166-16003185 | Msa1279150:intron | 25.0% |
| !! | CTTTTTGACAATAAATGGTT+TGG | + | chr8_3:16003171-16003190 | Msa1279150:intron | 25.0% |
| ! | TAATAACAAGTCTTCTCAAA+TGG | - | chr8_3:16003540-16003559 | None:intergenic | 25.0% |
| ! | AGATCAATTTCAATTTACAC+AGG | + | chr8_3:16003695-16003714 | Msa1279150:CDS | 25.0% |
| !! | CAAAAATATTCCTTTGAAAG+TGG | + | chr8_3:16003870-16003889 | Msa1279150:intron | 25.0% |
| !! | ATATGAGAATTTGTTCAACA+TGG | - | chr8_3:16003954-16003973 | None:intergenic | 25.0% |
| !! | GATTTTCAACATGGAATATA+AGG | - | chr8_3:16004046-16004065 | None:intergenic | 25.0% |
| ! | AACGAGACATTACATAATAT+TGG | + | chr8_3:16004212-16004231 | Msa1279150:intron | 25.0% |
| !! | ATATGAGAATTTGTTCAACA+TGG | - | chr8_3:16003954-16003973 | None:intergenic | 25.0% |
| ! | AAAATTCTAATCCTAAACTG+TGG | - | chr8_3:16004635-16004654 | None:intergenic | 25.0% |
| !!! | ACAGTTTAGGATTAGAATTT+TGG | + | chr8_3:16004634-16004653 | Msa1279150:CDS | 25.0% |
| ! | AAACCAACCTATGTTAATTT+AGG | + | chr8_3:16005210-16005229 | Msa1279150:intron | 25.0% |
| ! | AACCAACCTATGTTAATTTA+GGG | + | chr8_3:16005211-16005230 | Msa1279150:intron | 25.0% |
| ! | TCATTTACATAGAGAAACAT+AGG | + | chr8_3:16005586-16005605 | Msa1279150:three_prime_UTR | 25.0% |
| ! | AAACACTAAATTACAAAGGA+TGG | + | chr8_3:16005679-16005698 | Msa1279150:three_prime_UTR | 25.0% |
| ! | AACACTAAATTACAAAGGAT+GGG | + | chr8_3:16005680-16005699 | Msa1279150:three_prime_UTR | 25.0% |
| TAAGAAGGTCAAGAATAAGA+AGG | + | chr8_3:15999936-15999955 | Msa1279150:CDS | 30.0% | |
| ATTCTCTCAAGAAAACAAGA+GGG | + | chr8_3:15999999-16000018 | Msa1279150:CDS | 30.0% | |
| TCATCTCTATCATCTTCAAT+TGG | - | chr8_3:16000049-16000068 | None:intergenic | 30.0% | |
| ! | TGATAATGATCATGATTAGG+AGG | - | chr8_3:16000121-16000140 | None:intergenic | 30.0% |
| ! | GTGTGATAATGATCATGATT+AGG | - | chr8_3:16000124-16000143 | None:intergenic | 30.0% |
| TGGAAAATGGTGAAATTAAG+AGG | - | chr8_3:16000406-16000425 | None:intergenic | 30.0% | |
| ATCTTAGCCCAAATATTTGA+TGG | - | chr8_3:16000452-16000471 | None:intergenic | 30.0% | |
| TCAAATATTTGGGCTAAGAT+AGG | + | chr8_3:16000452-16000471 | Msa1279150:intron | 30.0% | |
| CAAATATTTGGGCTAAGATA+GGG | + | chr8_3:16000453-16000472 | Msa1279150:intron | 30.0% | |
| CAAATGGAACAAATCACAAA+TGG | - | chr8_3:16000652-16000671 | None:intergenic | 30.0% | |
| ! | TTGTTCCATTTGTTGCAATT+TGG | + | chr8_3:16000660-16000679 | Msa1279150:intron | 30.0% |
| GATAGACACAAAAAAGTAAG+TGG | - | chr8_3:16000743-16000762 | None:intergenic | 30.0% | |
| ! | TTGTTCCATTTGTTGCAATT+TGG | - | chr8_3:16000660-16000679 | None:intergenic | 30.0% |
| !! | GGTTGATTTGTTGACTAATT+TGG | - | chr8_3:16000849-16000868 | None:intergenic | 30.0% |
| !!! | TTCAAGAGTGTCTTTTATTC+AGG | + | chr8_3:16001157-16001176 | Msa1279150:intron | 30.0% |
| !!! | TCAAGAGTGTCTTTTATTCA+GGG | + | chr8_3:16001158-16001177 | Msa1279150:intron | 30.0% |
| AATGTTCTACAATCAATCAC+TGG | + | chr8_3:16001343-16001362 | Msa1279150:intron | 30.0% | |
| GTTCTCTAAATGTACATAAG+AGG | + | chr8_3:16001559-16001578 | Msa1279150:intron | 30.0% | |
| CATGTTTCTTTACTGAAACA+TGG | - | chr8_3:16001587-16001606 | None:intergenic | 30.0% | |
| ! | GTGTTTTCTGTTTTCTTCAA+AGG | + | chr8_3:16001739-16001758 | Msa1279150:intron | 30.0% |
| AATATTAGATGTACATGGCT+TGG | + | chr8_3:16002171-16002190 | Msa1279150:CDS | 30.0% | |
| GATAATGTCATGTGTAATAC+AGG | + | chr8_3:16002250-16002269 | Msa1279150:intron | 30.0% | |
| !!! | GACGTTATTTTAATTTGGGA+AGG | - | chr8_3:16002367-16002386 | None:intergenic | 30.0% |
| !!! | CCTGTATTTTTTGTTACAGA+GGG | - | chr8_3:16002591-16002610 | None:intergenic | 30.0% |
| ! | GGCAAAAAAGTATATGTATC+TGG | + | chr8_3:16002609-16002628 | Msa1279150:intron | 30.0% |
| GCAAAAAGAATACATGTATC+AGG | - | chr8_3:16002647-16002666 | None:intergenic | 30.0% | |
| GAAAGTAATGCATTATCAGT+AGG | - | chr8_3:16002698-16002717 | None:intergenic | 30.0% | |
| !! | AGAGTATTGTGACACTAATT+TGG | + | chr8_3:16003028-16003047 | Msa1279150:intron | 30.0% |
| ! | GAGTATTGTGACACTAATTT+GGG | + | chr8_3:16003029-16003048 | Msa1279150:intron | 30.0% |
| !! | TTAGTTTGTTCATAATGTGG+AGG | + | chr8_3:16003062-16003081 | Msa1279150:intron | 30.0% |
| ! | ATGGTCAATTTTCTGTTCAT+CGG | - | chr8_3:16003118-16003137 | None:intergenic | 30.0% |
| TTTGTAGGTGTGTTTGAAAA+TGG | - | chr8_3:16003137-16003156 | None:intergenic | 30.0% | |
| ! | TTTTCAAACACACCTACAAA+AGG | + | chr8_3:16003137-16003156 | Msa1279150:CDS | 30.0% |
| ATTTGGACTTGAGACTTAAA+CGG | + | chr8_3:16003232-16003251 | Msa1279150:intron | 30.0% | |
| GAGACTTAAAGGACTAATAT+AGG | + | chr8_3:16003289-16003308 | Msa1279150:intron | 30.0% | |
| TATAGGAAAAATCATGCTTC+TGG | - | chr8_3:16003330-16003349 | None:intergenic | 30.0% | |
| ACTAAGTTTCCTTTGTCTAA+TGG | - | chr8_3:16003463-16003482 | None:intergenic | 30.0% | |
| !! | ACAGTATTTTGAATGGTTGA+AGG | - | chr8_3:16003596-16003615 | None:intergenic | 30.0% |
| ! | CAAAATACTGTTTTATCTGC+AGG | + | chr8_3:16003605-16003624 | Msa1279150:intron | 30.0% |
| AAGCATTATCTTTACAGCTA+CGG | - | chr8_3:16003650-16003669 | None:intergenic | 30.0% | |
| !! | ATCTCTTTTGAGCGTTTTTT+CGG | - | chr8_3:16003679-16003698 | None:intergenic | 30.0% |
| CCATTGCAAAATGATGATAT+GGG | + | chr8_3:16003723-16003742 | Msa1279150:CDS | 30.0% | |
| CATTGCAAAATGATGATATG+GGG | + | chr8_3:16003724-16003743 | Msa1279150:CDS | 30.0% | |
| GAAACTAAACAAGACAATCT+AGG | - | chr8_3:16003840-16003859 | None:intergenic | 30.0% | |
| GTTTCAATTTCCACTTTCAA+AGG | - | chr8_3:16003883-16003902 | None:intergenic | 30.0% | |
| AAACTCACTAGCAAGTATTT+CGG | + | chr8_3:16004014-16004033 | Msa1279150:intron | 30.0% | |
| !! | ATTTTTGGGGATTTTCAACA+TGG | - | chr8_3:16004055-16004074 | None:intergenic | 30.0% |
| ATCCAAGATTCCTATAAAGA+TGG | + | chr8_3:16004123-16004142 | Msa1279150:intron | 30.0% | |
| TTCCATCTTTATAGGAATCT+TGG | - | chr8_3:16004128-16004147 | None:intergenic | 30.0% | |
| TATCAAAAACTTCACTCTAG+GGG | - | chr8_3:16004238-16004257 | None:intergenic | 30.0% | |
| GTATCAAAAACTTCACTCTA+GGG | - | chr8_3:16004239-16004258 | None:intergenic | 30.0% | |
| TGTATCAAAAACTTCACTCT+AGG | - | chr8_3:16004240-16004259 | None:intergenic | 30.0% | |
| ! | TCCATTTTGCTTATGCTATT+TGG | + | chr8_3:16004268-16004287 | Msa1279150:intron | 30.0% |
| TCCAAATAGCATAAGCAAAA+TGG | - | chr8_3:16004272-16004291 | None:intergenic | 30.0% | |
| TGTGCATATTTCATGTTTGT+TGG | + | chr8_3:16004344-16004363 | Msa1279150:intron | 30.0% | |
| GAGAATTGAAACTCAACATA+TGG | + | chr8_3:16004405-16004424 | Msa1279150:intron | 30.0% | |
| GGTATCACTAGCAATTAATT+CGG | + | chr8_3:16004450-16004469 | Msa1279150:intron | 30.0% | |
| !! | AAGTGTGCTGATATATCTTT+TGG | + | chr8_3:16004590-16004609 | Msa1279150:CDS | 30.0% |
| CATATATTCTTCCACAGTTT+AGG | + | chr8_3:16004621-16004640 | Msa1279150:CDS | 30.0% | |
| GAGAACACAAAACAATATTG+TGG | + | chr8_3:16004656-16004675 | Msa1279150:CDS | 30.0% | |
| AACACAAAACAATATTGTGG+TGG | + | chr8_3:16004659-16004678 | Msa1279150:CDS | 30.0% | |
| !!! | GTGTTTTGACATCTTCTATA+AGG | - | chr8_3:16004701-16004720 | None:intergenic | 30.0% |
| !! | GAAACTAGAAAAAGCATTTG+TGG | + | chr8_3:16004767-16004786 | Msa1279150:CDS | 30.0% |
| ! | TTTTTGTAATATGATGCAGG+TGG | + | chr8_3:16004962-16004981 | Msa1279150:intron | 30.0% |
| ACCAACCTATGTTAATTTAG+GGG | + | chr8_3:16005212-16005231 | Msa1279150:intron | 30.0% | |
| AAACTCCCCTAAATTAACAT+AGG | - | chr8_3:16005220-16005239 | None:intergenic | 30.0% | |
| ! | TGTTAATTTAGGGGAGTTTT+AGG | + | chr8_3:16005221-16005240 | Msa1279150:intron | 30.0% |
| TTTGCTGCAAGATAATTCTT+AGG | - | chr8_3:16005338-16005357 | None:intergenic | 30.0% | |
| CTAAATGCAAGCTCATTTAT+TGG | + | chr8_3:16005409-16005428 | Msa1279150:three_prime_UTR | 30.0% | |
| ACCACATTATGACAAAATCA+AGG | + | chr8_3:16005723-16005742 | Msa1279150:three_prime_UTR | 30.0% | |
| ! | TCCTTGATTTTGTCATAATG+TGG | - | chr8_3:16005727-16005746 | None:intergenic | 30.0% |
| AGAGAGAGAGAATAATGGTT+TGG | - | chr8_3:15999605-15999624 | None:intergenic | 35.0% | |
| AACAAAGATGTTGTGTTGTG+TGG | - | chr8_3:15999680-15999699 | None:intergenic | 35.0% | |
| ATGTGATATGAAAATAGGGG+TGG | + | chr8_3:15999865-15999884 | Msa1279150:intron | 35.0% | |
| CAGAAGAAGAGAGATTAAGA+AGG | + | chr8_3:15999921-15999940 | Msa1279150:CDS | 35.0% | |
| CATTCTCTCAAGAAAACAAG+AGG | + | chr8_3:15999998-16000017 | Msa1279150:CDS | 35.0% | |
| AGATGATAGAGATGAACAAG+AGG | + | chr8_3:16000054-16000073 | Msa1279150:CDS | 35.0% | |
| ATCATTATCACACACTCTTG+AGG | + | chr8_3:16000131-16000150 | Msa1279150:CDS | 35.0% | |
| !!! | GTGTTTCTGAAAGAGCATTT+TGG | + | chr8_3:16000220-16000239 | Msa1279150:intron | 35.0% |
| TTCCAAATTGTTTCCTCCAA+AGG | - | chr8_3:16000317-16000336 | None:intergenic | 35.0% | |
| TTGGTCCTCCATCAAATATT+TGG | + | chr8_3:16000441-16000460 | Msa1279150:intron | 35.0% | |
| TGGTCCTCCATCAAATATTT+GGG | + | chr8_3:16000442-16000461 | Msa1279150:intron | 35.0% | |
| TTAGCCCAAATATTTGATGG+AGG | - | chr8_3:16000449-16000468 | None:intergenic | 35.0% | |
| TCTCTCCAAATTGCAACAAA+TGG | - | chr8_3:16000763-16000782 | None:intergenic | 35.0% | |
| GACACAAAAAAGTAAGTGGT+GGG | - | chr8_3:16000739-16000758 | None:intergenic | 35.0% | |
| AGACACAAAAAAGTAAGTGG+TGG | - | chr8_3:16000740-16000759 | None:intergenic | 35.0% | |
| TCTCTCCAAATTGCAACAAA+TGG | + | chr8_3:16000763-16000782 | Msa1279150:intron | 35.0% | |
| GGAACAAATAACAAATGGAG+AGG | + | chr8_3:16000784-16000803 | Msa1279150:intron | 35.0% | |
| ! | AGACACTTAATTTGAGACGT+AGG | + | chr8_3:16000945-16000964 | Msa1279150:intron | 35.0% |
| ! | GACACTTAATTTGAGACGTA+GGG | + | chr8_3:16000946-16000965 | Msa1279150:intron | 35.0% |
| !! | CTTTTATTCAGGGAAAGTGT+TGG | + | chr8_3:16001168-16001187 | Msa1279150:intron | 35.0% |
| ! | TTTGCTTGTAGTACGGATTA+TGG | + | chr8_3:16001214-16001233 | Msa1279150:intron | 35.0% |
| TACAATCAATCACTGGTAGT+AGG | + | chr8_3:16001350-16001369 | Msa1279150:intron | 35.0% | |
| TCATCATTAACAGGTTGCAT+TGG | + | chr8_3:16001531-16001550 | Msa1279150:intron | 35.0% | |
| AGCAGTGTTCTATATATGCT+AGG | + | chr8_3:16001862-16001881 | Msa1279150:intron | 35.0% | |
| GTATTGCAATATTACCCTCA+AGG | + | chr8_3:16001953-16001972 | Msa1279150:CDS | 35.0% | |
| TATTACCCTCAAGGTTATCA+TGG | + | chr8_3:16001962-16001981 | Msa1279150:CDS | 35.0% | |
| !! | AGGTTATCATGGAGTTGATA+AGG | + | chr8_3:16001973-16001992 | Msa1279150:CDS | 35.0% |
| !! | TATCATGGAGTTGATAAGGA+AGG | + | chr8_3:16001977-16001996 | Msa1279150:CDS | 35.0% |
| AAGGGACAATGTAAAAACCT+CGG | - | chr8_3:16002348-16002367 | None:intergenic | 35.0% | |
| CAAATGTATATCGTCAATGC+TGG | + | chr8_3:16002447-16002466 | Msa1279150:CDS | 35.0% | |
| ! | CTGTATCTTTGCGATAGTTT+TGG | - | chr8_3:16002523-16002542 | None:intergenic | 35.0% |
| CAAAACTATCGCAAAGATAC+AGG | + | chr8_3:16002521-16002540 | Msa1279150:intron | 35.0% | |
| CCCTCTGTAACAAAAAATAC+AGG | + | chr8_3:16002588-16002607 | Msa1279150:intron | 35.0% | |
| !!! | GCCTGTATTTTTTGTTACAG+AGG | - | chr8_3:16002592-16002611 | None:intergenic | 35.0% |
| !! | TACATGATATCATCGACTCT+AGG | + | chr8_3:16002758-16002777 | Msa1279150:intron | 35.0% |
| !!! | AGTCAATTGCCGGATTTTTT+GGG | + | chr8_3:16002863-16002882 | Msa1279150:intron | 35.0% |
| ! | CACAATACTCTAGTTCAACA+TGG | - | chr8_3:16003019-16003038 | None:intergenic | 35.0% |
| ! | GAGTTGAACTTACCTTTTGT+AGG | - | chr8_3:16003152-16003171 | None:intergenic | 35.0% |
| GTGTACATCTTGAGACTTAA+AGG | + | chr8_3:16003278-16003297 | Msa1279150:intron | 35.0% | |
| ATATGTCAACAGCAGAATCT+TGG | + | chr8_3:16003412-16003431 | Msa1279150:CDS | 35.0% | |
| ! | GATCATGAAGAAGTGAGTTT+TGG | + | chr8_3:16003504-16003523 | Msa1279150:intron | 35.0% |
| AGTCTTCTCAAATGGTTCAA+AGG | - | chr8_3:16003532-16003551 | None:intergenic | 35.0% | |
| AGCTGTAAAGATAATGCTTC+TGG | + | chr8_3:16003651-16003670 | Msa1279150:CDS | 35.0% | |
| GCCATTGCAAAATGATGATA+TGG | + | chr8_3:16003722-16003741 | Msa1279150:CDS | 35.0% | |
| ! | CCCATATCATCATTTTGCAA+TGG | - | chr8_3:16003726-16003745 | None:intergenic | 35.0% |
| ACTTGTACAGAGAATTCCAA+AGG | + | chr8_3:16003753-16003772 | Msa1279150:CDS | 35.0% | |
| TACAGAGAATTCCAAAGGTA+CGG | + | chr8_3:16003758-16003777 | Msa1279150:intron | 35.0% | |
| CAGAAGGTTTCCATCTTTAT+AGG | - | chr8_3:16004136-16004155 | None:intergenic | 35.0% | |
| ATGGAAACCTTCTGTATACA+TGG | + | chr8_3:16004142-16004161 | Msa1279150:intron | 35.0% | |
| ATGTTCACCATGTATACAGA+AGG | - | chr8_3:16004152-16004171 | None:intergenic | 35.0% | |
| ! | AACATATGGATTGTTCCTGT+TGG | + | chr8_3:16004419-16004438 | Msa1279150:intron | 35.0% |
| ! | ACATATGGATTGTTCCTGTT+GGG | + | chr8_3:16004420-16004439 | Msa1279150:intron | 35.0% |
| TTTGTTCAACATGGAAGATG+AGG | - | chr8_3:16004482-16004501 | None:intergenic | 35.0% | |
| ACTTCGATCAGAAATTGGTT+CGG | + | chr8_3:16004522-16004541 | Msa1279150:CDS | 35.0% | |
| !! | AAATTGGTTCGGCTTTGTTA+AGG | + | chr8_3:16004533-16004552 | Msa1279150:CDS | 35.0% |
| TGAAGACGTTCTTGTATACA+TGG | - | chr8_3:16004747-16004766 | None:intergenic | 35.0% | |
| ! | TTTTCCATAGGTATTTCAGC+AGG | - | chr8_3:16004807-16004826 | None:intergenic | 35.0% |
| TGCTGAAATACCTATGGAAA+AGG | + | chr8_3:16004806-16004825 | Msa1279150:CDS | 35.0% | |
| ! | AGCATTTTCTCCTTTTCCAT+AGG | - | chr8_3:16004819-16004838 | None:intergenic | 35.0% |
| GAAAATGCTTATGAGCTCTT+TGG | + | chr8_3:16004830-16004849 | Msa1279150:CDS | 35.0% | |
| ! | TAACCCTCTTGGTATTTTCA+AGG | - | chr8_3:16004881-16004900 | None:intergenic | 35.0% |
| AGTATAGAGAATAACCCTCT+TGG | - | chr8_3:16004892-16004911 | None:intergenic | 35.0% | |
| TCCCCTAAATTAACATAGGT+TGG | - | chr8_3:16005216-16005235 | None:intergenic | 35.0% | |
| !!! | GAGTTTTAGGAATGACTTCA+TGG | + | chr8_3:16005234-16005253 | Msa1279150:intron | 35.0% |
| !! | TTTTAGGAATGACTTCATGG+TGG | + | chr8_3:16005237-16005256 | Msa1279150:intron | 35.0% |
| !! | CAAAGAAGACTGTTTTGTTG+AGG | + | chr8_3:16005354-16005373 | Msa1279150:CDS | 35.0% |
| TCATTTATTGGACCCACAAA+AGG | + | chr8_3:16005421-16005440 | Msa1279150:three_prime_UTR | 35.0% | |
| AGTGTCCATAGAGAAAACAT+AGG | + | chr8_3:16005487-16005506 | Msa1279150:three_prime_UTR | 35.0% | |
| GTGTCCATAGAGAAAACATA+GGG | + | chr8_3:16005488-16005507 | Msa1279150:three_prime_UTR | 35.0% | |
| CATAGAGAAAACATAGGGAT+GGG | + | chr8_3:16005493-16005512 | Msa1279150:three_prime_UTR | 35.0% | |
| TAGTAAGAGCGAGATTTGAA+GGG | - | chr8_3:16005564-16005583 | None:intergenic | 35.0% | |
| TTAGTAAGAGCGAGATTTGA+AGG | - | chr8_3:16005565-16005584 | None:intergenic | 35.0% | |
| AGAGAAACATAGGTATGAGA+TGG | + | chr8_3:16005596-16005615 | Msa1279150:three_prime_UTR | 35.0% | |
| GATGGTCCTCTATTTAGATT+TGG | + | chr8_3:16005614-16005633 | Msa1279150:three_prime_UTR | 35.0% | |
| CACTGTCCAAATCTAAATAG+AGG | - | chr8_3:16005623-16005642 | None:intergenic | 35.0% | |
| CTATTTAGATTTGGACAGTG+TGG | + | chr8_3:16005623-16005642 | Msa1279150:three_prime_UTR | 35.0% | |
| GAGAGAGAGAGAGAGAATAA+TGG | - | chr8_3:15999610-15999629 | None:intergenic | 40.0% | |
| ATCTCACTGAGATACTGTAG+TGG | - | chr8_3:15999657-15999676 | None:intergenic | 40.0% | |
| TTGAGAAGACCATTCAGATG+TGG | + | chr8_3:16000280-16000299 | Msa1279150:CDS | 40.0% | |
| TGAGAAGACCATTCAGATGT+GGG | + | chr8_3:16000281-16000300 | Msa1279150:CDS | 40.0% | |
| CATATCTTCCCACATCTGAA+TGG | - | chr8_3:16000292-16000311 | None:intergenic | 40.0% | |
| CATTCAGATGTGGGAAGATA+TGG | + | chr8_3:16000290-16000309 | Msa1279150:CDS | 40.0% | |
| ! | GTCCTTTGGAGGAAACAATT+TGG | + | chr8_3:16000312-16000331 | Msa1279150:intron | 40.0% |
| GAAAGAGAAAGCTTACCTTG+AGG | - | chr8_3:16000350-16000369 | None:intergenic | 40.0% | |
| !! | CTGGGACCAATTTTGGAAAA+TGG | - | chr8_3:16000419-16000438 | None:intergenic | 40.0% |
| ! | TCCAAAATTGGTCCCAGTTT+TGG | + | chr8_3:16000422-16000441 | Msa1279150:intron | 40.0% |
| ! | ACCAAAACTGGGACCAATTT+TGG | - | chr8_3:16000426-16000445 | None:intergenic | 40.0% |
| TTTGATGGAGGACCAAAACT+GGG | - | chr8_3:16000437-16000456 | None:intergenic | 40.0% | |
| ATTTGATGGAGGACCAAAAC+TGG | - | chr8_3:16000438-16000457 | None:intergenic | 40.0% | |
| GGAACAAATCACAAATGGAG+AGG | - | chr8_3:16000647-16000666 | None:intergenic | 40.0% | |
| ! | ACGAGTGAAGTGTTAGAAGT+GGG | - | chr8_3:16000818-16000837 | None:intergenic | 40.0% |
| ! | AACGAGTGAAGTGTTAGAAG+TGG | - | chr8_3:16000819-16000838 | None:intergenic | 40.0% |
| ! | CTTGTAGTACGGATTATGGT+TGG | + | chr8_3:16001218-16001237 | Msa1279150:intron | 40.0% |
| CAACTCCATGATAACCTTGA+GGG | - | chr8_3:16001970-16001989 | None:intergenic | 40.0% | |
| TCAACTCCATGATAACCTTG+AGG | - | chr8_3:16001971-16001990 | None:intergenic | 40.0% | |
| AATCCATCGCTTTGATGCAA+TGG | - | chr8_3:16002137-16002156 | None:intergenic | 40.0% | |
| !! | ATGTACATGGCTTGGTATGT+AGG | + | chr8_3:16002179-16002198 | Msa1279150:intron | 40.0% |
| AGGGACAATGTAAAAACCTC+GGG | - | chr8_3:16002347-16002366 | None:intergenic | 40.0% | |
| TGCATTATCAGTAGGACTTC+AGG | - | chr8_3:16002690-16002709 | None:intergenic | 40.0% | |
| GCATTTGTACAGTCAATTGC+CGG | + | chr8_3:16002853-16002872 | Msa1279150:intron | 40.0% | |
| !!! | CAGTCAATTGCCGGATTTTT+TGG | + | chr8_3:16002862-16002881 | Msa1279150:intron | 40.0% |
| !! | TCGTGTAAATGTTCTGGAGA+AGG | + | chr8_3:16002890-16002909 | Msa1279150:CDS | 40.0% |
| !! | TGTAAATGTTCTGGAGAAGG+TGG | + | chr8_3:16002893-16002912 | Msa1279150:CDS | 40.0% |
| TGGATGTCTTAGGTCTAGTA+AGG | + | chr8_3:16002913-16002932 | Msa1279150:CDS | 40.0% | |
| GGATGTCTTAGGTCTAGTAA+GGG | + | chr8_3:16002914-16002933 | Msa1279150:CDS | 40.0% | |
| TCTGTTCATCGGAAACTTTG+AGG | - | chr8_3:16003107-16003126 | None:intergenic | 40.0% | |
| GTCTCAAGATGTACACATCA+TGG | - | chr8_3:16003274-16003293 | None:intergenic | 40.0% | |
| CTTGCTCATCCATTAGACAA+AGG | + | chr8_3:16003451-16003470 | Msa1279150:CDS | 40.0% | |
| CACTTCTTCATGATCAACTG+AGG | - | chr8_3:16003499-16003518 | None:intergenic | 40.0% | |
| ! | TACTGTTTTATCTGCAGGCT+AGG | + | chr8_3:16003610-16003629 | Msa1279150:intron | 40.0% |
| ! | ACTGTTTTATCTGCAGGCTA+GGG | + | chr8_3:16003611-16003630 | Msa1279150:intron | 40.0% |
| ! | ACAGAGAATTCCAAAGGTAC+GGG | + | chr8_3:16003759-16003778 | Msa1279150:intron | 40.0% |
| ACCATATGTACTGTTCCTGT+CGG | + | chr8_3:16003905-16003924 | Msa1279150:intron | 40.0% | |
| ! | TTGGATTTTCAACCACTCGT+GGG | - | chr8_3:16004109-16004128 | None:intergenic | 40.0% |
| ACCTCATATGAACCATTCAC+AGG | + | chr8_3:16004189-16004208 | Msa1279150:intron | 40.0% | |
| TCCTGTGAATGGTTCATATG+AGG | - | chr8_3:16004193-16004212 | None:intergenic | 40.0% | |
| TAATGTCTCGTTCCTGTGAA+TGG | - | chr8_3:16004204-16004223 | None:intergenic | 40.0% | |
| ! | TGTCAAAACACCTTCTGAAG+AGG | + | chr8_3:16004710-16004729 | Msa1279150:CDS | 40.0% |
| AGAATACGATCCTCTTCAGA+AGG | - | chr8_3:16004723-16004742 | None:intergenic | 40.0% | |
| TAGGTATTTCAGCAGGTCTA+TGG | - | chr8_3:16004800-16004819 | None:intergenic | 40.0% | |
| TAGACCTGCTGAAATACCTA+TGG | + | chr8_3:16004800-16004819 | Msa1279150:CDS | 40.0% | |
| TGCTTATGAGCTCTTTGGAT+AGG | + | chr8_3:16004835-16004854 | Msa1279150:CDS | 40.0% | |
| TCGACCTTGAAAATACCAAG+AGG | + | chr8_3:16004874-16004893 | Msa1279150:CDS | 40.0% | |
| CGACCTTGAAAATACCAAGA+GGG | + | chr8_3:16004875-16004894 | Msa1279150:CDS | 40.0% | |
| TGAGCTACTAGAGAATCTGA+AGG | + | chr8_3:16005019-16005038 | Msa1279150:CDS | 40.0% | |
| TGAGTAGTTGTTATCACCAC+AGG | + | chr8_3:16005378-16005397 | Msa1279150:three_prime_UTR | 40.0% | |
| GCATTTAGTATTGTCTCCTG+TGG | - | chr8_3:16005397-16005416 | None:intergenic | 40.0% | |
| ! | CCATCCCTATGTTTTCTCTA+TGG | - | chr8_3:16005495-16005514 | None:intergenic | 40.0% |
| CCATAGAGAAAACATAGGGA+TGG | + | chr8_3:16005492-16005511 | Msa1279150:three_prime_UTR | 40.0% | |
| AGTAAGAGCGAGATTTGAAG+GGG | - | chr8_3:16005563-16005582 | None:intergenic | 40.0% | |
| ! | TGAGATACTGTAGTGGAGAG+TGG | - | chr8_3:15999650-15999669 | None:intergenic | 45.0% |
| TGTGGGAAGATATGGTCCTT+TGG | + | chr8_3:16000298-16000317 | Msa1279150:intron | 45.0% | |
| TGGAACTGATACCATCCTCA+AGG | + | chr8_3:16000332-16000351 | Msa1279150:intron | 45.0% | |
| GAGAAAGCTTACCTTGAGGA+TGG | - | chr8_3:16000346-16000365 | None:intergenic | 45.0% | |
| ! | CGAGTGAAGTGTTAGAAGTG+GGG | - | chr8_3:16000817-16000836 | None:intergenic | 45.0% |
| TTGTGGTTATGCGCATCAAG+CGG | - | chr8_3:16002045-16002064 | None:intergenic | 45.0% | |
| CTTGATGCGCATAACCACAA+TGG | + | chr8_3:16002045-16002064 | Msa1279150:CDS | 45.0% | |
| TTTGATGCAATGGAGCATGC+TGG | - | chr8_3:16002127-16002146 | None:intergenic | 45.0% | |
| AGATAACAGTTACTACCCCG+AGG | + | chr8_3:16002328-16002347 | Msa1279150:CDS | 45.0% | |
| GGGACAATGTAAAAACCTCG+GGG | - | chr8_3:16002346-16002365 | None:intergenic | 45.0% | |
| TATATCGTCAATGCTGGTCC+TGG | + | chr8_3:16002453-16002472 | Msa1279150:CDS | 45.0% | |
| ! | CAAAGCATCTTCCTAAAGCC+AGG | - | chr8_3:16002474-16002493 | None:intergenic | 45.0% |
| !! | CTGGCTTTAGGAAGATGCTT+TGG | + | chr8_3:16002472-16002491 | Msa1279150:CDS | 45.0% |
| TCAAGAAACTTCTGAGCAGC+AGG | - | chr8_3:16002498-16002517 | None:intergenic | 45.0% | |
| !!! | CAATTGCCGGATTTTTTGGG+TGG | + | chr8_3:16002866-16002885 | Msa1279150:CDS | 45.0% |
| TTAGGTCTAGTAAGGGTCCA+TGG | + | chr8_3:16002921-16002940 | Msa1279150:CDS | 45.0% | |
| TGATCAACTGAGGCTAAACG+AGG | - | chr8_3:16003489-16003508 | None:intergenic | 45.0% | |
| CCATATGTACTGTTCCTGTC+GGG | + | chr8_3:16003906-16003925 | Msa1279150:intron | 45.0% | |
| AACCACTCGTGGGAATGTTA+TGG | - | chr8_3:16004099-16004118 | None:intergenic | 45.0% | |
| ! | CTTGGATTTTCAACCACTCG+TGG | - | chr8_3:16004110-16004129 | None:intergenic | 45.0% |
| TTGTTCCTGTTGGGTGTGAT+TGG | + | chr8_3:16004429-16004448 | Msa1279150:intron | 45.0% | |
| TGATACCAATCACACCCAAC+AGG | - | chr8_3:16004437-16004456 | None:intergenic | 45.0% | |
| CAGGCACTTCGATCAGAAAT+TGG | + | chr8_3:16004517-16004536 | Msa1279150:intron | 45.0% | |
| TAGATTTGGACAGTGTGGAG+AGG | + | chr8_3:16005628-16005647 | Msa1279150:three_prime_UTR | 45.0% | |
| ! | GTAGTGGAGAGTGGAGAGAA+GGG | - | chr8_3:15999641-15999660 | None:intergenic | 50.0% |
| ! | TGTAGTGGAGAGTGGAGAGA+AGG | - | chr8_3:15999642-15999661 | None:intergenic | 50.0% |
| GGGAAGATATGGTCCTTTGG+AGG | + | chr8_3:16000301-16000320 | Msa1279150:intron | 50.0% | |
| GGTGGGATCCACTTAGTGAT+AGG | + | chr8_3:16000712-16000731 | Msa1279150:intron | 50.0% | |
| ! | TGGTGGGTCCTATCACTAAG+TGG | - | chr8_3:16000723-16000742 | None:intergenic | 50.0% |
| GCCTCTCGATGTAAACTGGT+CGG | - | chr8_3:16002003-16002022 | None:intergenic | 50.0% | |
| CCAAGCCTCTCGATGTAAAC+TGG | - | chr8_3:16002007-16002026 | None:intergenic | 50.0% | |
| CCAGTTTACATCGAGAGGCT+TGG | + | chr8_3:16002004-16002023 | Msa1279150:CDS | 50.0% | |
| GCTCCATTGCATCAAAGCGA+TGG | + | chr8_3:16002131-16002150 | Msa1279150:CDS | 50.0% | |
| ACCTACTGCTGCGAATCTCT+TGG | + | chr8_3:16002289-16002308 | Msa1279150:CDS | 50.0% | |
| ! | TCAATGCTGGTCCTGGCTTT+AGG | + | chr8_3:16002460-16002479 | Msa1279150:CDS | 50.0% |
| CACGAGCCACCCAAAAAATC+CGG | - | chr8_3:16002875-16002894 | None:intergenic | 50.0% | |
| GGTGGCTCGTGTAAATGTTC+TGG | + | chr8_3:16002884-16002903 | Msa1279150:CDS | 50.0% | |
| CTGGAGAAGGTGGATGTCTT+AGG | + | chr8_3:16002903-16002922 | Msa1279150:CDS | 50.0% | |
| ACATCCTCTTCTCGTCTTGC+AGG | + | chr8_3:16003377-16003396 | Msa1279150:intron | 50.0% | |
| CATCCTCTTCTCGTCTTGCA+GGG | + | chr8_3:16003378-16003397 | Msa1279150:intron | 50.0% | |
| CCCGACAGGAACAGTACATA+TGG | - | chr8_3:16003909-16003928 | None:intergenic | 50.0% | |
| CGATACTAATCACACCCGAC+AGG | - | chr8_3:16003923-16003942 | None:intergenic | 50.0% | |
| TGCCATAACATTCCCACGAG+TGG | + | chr8_3:16004094-16004113 | Msa1279150:intron | 50.0% | |
| ATTGGACCCACAAAAGGCTG+AGG | + | chr8_3:16005427-16005446 | Msa1279150:three_prime_UTR | 50.0% | |
| ! | TCCTTGCCTCAGCCTTTTGT+GGG | - | chr8_3:16005436-16005455 | None:intergenic | 50.0% |
| ! | TTCCTTGCCTCAGCCTTTTG+TGG | - | chr8_3:16005437-16005456 | None:intergenic | 50.0% |
| GCCGACCAGTTTACATCGAG+AGG | + | chr8_3:16001999-16002018 | Msa1279150:CDS | 55.0% | |
| GTTATGCGCATCAAGCGGCT+AGG | - | chr8_3:16002040-16002059 | None:intergenic | 55.0% | |
| CTCTCTCGAACTCCTGGACA+TGG | - | chr8_3:16002087-16002106 | None:intergenic | 55.0% | |
| GTAGAGCTCTCTCGAACTCC+TGG | - | chr8_3:16002093-16002112 | None:intergenic | 55.0% | |
| GGAGTTCGAGAGAGCTCTAC+AGG | + | chr8_3:16002093-16002112 | Msa1279150:CDS | 55.0% | |
| GCCAAGAGATTCGCAGCAGT+AGG | - | chr8_3:16002293-16002312 | None:intergenic | 55.0% | |
| GCAAGACACACCCGTACCTT+TGG | - | chr8_3:16003772-16003791 | None:intergenic | 55.0% | |
| AAGGTACGGGTGTGTCTTGC+AGG | + | chr8_3:16003772-16003791 | Msa1279150:intron | 55.0% | |
| AGGTACGGGTGTGTCTTGCA+GGG | + | chr8_3:16003773-16003792 | Msa1279150:intron | 55.0% | |
| ACCCACAAAAGGCTGAGGCA+AGG | + | chr8_3:16005432-16005451 | Msa1279150:three_prime_UTR | 55.0% | |
| GGCTGAGGCAAGGAATGACA+CGG | + | chr8_3:16005442-16005461 | Msa1279150:three_prime_UTR | 55.0% | |
| ! | TTTGGGGTGGAAGGACTAGC+CGG | - | chr8_3:16005777-16005796 | None:intergenic | 55.0% |
| CGTCCCTGCAAGACGAGAAG+AGG | - | chr8_3:16003384-16003403 | None:intergenic | 60.0% | |
| GGTACGGGTGTGTCTTGCAG+GGG | + | chr8_3:16003774-16003793 | Msa1279150:intron | 60.0% | |
| GTACGGGTGTGTCTTGCAGG+GGG | + | chr8_3:16003775-16003794 | Msa1279150:intron | 60.0% | |
| TACGGGTGTGTCTTGCAGGG+GGG | + | chr8_3:16003776-16003795 | Msa1279150:intron | 60.0% | |
| ACGGGTGTGTCTTGCAGGGG+GGG | + | chr8_3:16003777-16003796 | Msa1279150:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 15999578 | 16005801 | 15999578 | ID=Msa1279150;Name=Msa1279150 |
| chr8_3 | mRNA | 15999578 | 16005801 | 15999578 | ID=Msa1279150-mRNA-1;Parent=Msa1279150;Name=Msa1279150-mRNA-1;_AED=0.11;_eAED=0.11;_QI=204|0.83|0.84|1|0.91|0.92|13|427|560 |
| chr8_3 | exon | 15999578 | 15999788 | 15999578 | ID=Msa1279150-mRNA-1:exon:6153;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 15999882 | 16000152 | 15999882 | ID=Msa1279150-mRNA-1:exon:6154;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16000254 | 16000311 | 16000254 | ID=Msa1279150-mRNA-1:exon:6155;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16001926 | 16002192 | 16001926 | ID=Msa1279150-mRNA-1:exon:6156;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16002272 | 16002349 | 16002272 | ID=Msa1279150-mRNA-1:exon:6157;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16002438 | 16002508 | 16002438 | ID=Msa1279150-mRNA-1:exon:6158;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16002865 | 16002964 | 16002865 | ID=Msa1279150-mRNA-1:exon:6159;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16003066 | 16003158 | 16003066 | ID=Msa1279150-mRNA-1:exon:6160;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16003399 | 16003515 | 16003399 | ID=Msa1279150-mRNA-1:exon:6161;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16003627 | 16003774 | 16003627 | ID=Msa1279150-mRNA-1:exon:6162;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16004520 | 16004896 | 16004520 | ID=Msa1279150-mRNA-1:exon:6163;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16004981 | 16005055 | 16004981 | ID=Msa1279150-mRNA-1:exon:6164;Parent=Msa1279150-mRNA-1 |
| chr8_3 | exon | 16005354 | 16005801 | 16005354 | ID=Msa1279150-mRNA-1:exon:6165;Parent=Msa1279150-mRNA-1 |
| chr8_3 | five_prime_UTR | 15999578 | 15999781 | 15999578 | ID=Msa1279150-mRNA-1:five_prime_utr;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 15999782 | 15999788 | 15999782 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 15999882 | 16000152 | 15999882 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16000254 | 16000311 | 16000254 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16001926 | 16002192 | 16001926 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16002272 | 16002349 | 16002272 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16002438 | 16002508 | 16002438 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16002865 | 16002964 | 16002865 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16003066 | 16003158 | 16003066 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16003399 | 16003515 | 16003399 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16003627 | 16003774 | 16003627 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16004520 | 16004896 | 16004520 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16004981 | 16005055 | 16004981 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | CDS | 16005354 | 16005374 | 16005354 | ID=Msa1279150-mRNA-1:cds;Parent=Msa1279150-mRNA-1 |
| chr8_3 | three_prime_UTR | 16005375 | 16005801 | 16005375 | ID=Msa1279150-mRNA-1:three_prime_utr;Parent=Msa1279150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
