Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291580 | XP_003628728.3 | 96.667 | 360 | 10 | 2 | 1 | 360 | 1 | 358 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291580 | sp|Q9ZPQ3|GEK1_ARATH | 74.051 | 316 | 78 | 1 | 48 | 359 | 1 | 316 | 2.50e-173 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291580 | A0A396GML3 | 96.667 | 360 | 10 | 2 | 1 | 360 | 1 | 358 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754680 | Msa1291580 | -0.809677 | 1.681254e-50 | -8.615850e-47 |
| Msa0756630 | Msa1291580 | 0.803332 | 3.666753e-49 | -8.615850e-47 |
| Msa0797350 | Msa1291580 | -0.803848 | 2.866062e-49 | -8.615850e-47 |
| Msa0834860 | Msa1291580 | -0.819367 | 1.205687e-52 | -8.615850e-47 |
| Msa1245940 | Msa1291580 | 0.819730 | 9.961106e-53 | -8.615850e-47 |
| Msa1259070 | Msa1291580 | 0.816775 | 4.646306e-52 | -8.615850e-47 |
| Msa1291580 | Msa1445610 | 0.812141 | 4.922934e-51 | -8.615850e-47 |
| Msa0333720 | Msa1291580 | 0.838127 | 3.458385e-57 | -8.615850e-47 |
| Msa0334350 | Msa1291580 | -0.811702 | 6.133676e-51 | -8.615850e-47 |
| Msa1197490 | Msa1291580 | 0.843274 | 1.549349e-58 | -8.615850e-47 |
| Msa1208890 | Msa1291580 | 0.809244 | 2.082532e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291580 | MtrunA17_Chr8g0366111 | 96.667 | 360 | 10 | 2 | 1 | 360 | 1 | 358 | 0.0 | 711 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291580 | AT2G03800.2 | 68.678 | 348 | 101 | 2 | 20 | 359 | 13 | 360 | 1.37e-174 | 489 |
| Msa1291580 | AT2G03800.1 | 74.051 | 316 | 78 | 1 | 48 | 359 | 1 | 316 | 2.54e-174 | 487 |
Find 115 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACATTTGTTTCTCCTTT+TGG | 0.133900 | 8_3:+47008457 | None:intergenic |
| TATAGTGGTGGAAGATTATT+TGG | 0.167588 | 8_3:-47012236 | Msa1291580:CDS |
| GACACTCAAAAGAAGTTATT+TGG | 0.171593 | 8_3:+47008036 | None:intergenic |
| TGGGTTGGTCACCTACTTTC+TGG | 0.174476 | 8_3:-47008502 | Msa1291580:CDS |
| TATGTTCCTATGTATTTATT+TGG | 0.233322 | 8_3:-47007768 | Msa1291580:three_prime_UTR |
| CATACATTTATTATCAATCT+AGG | 0.249400 | 8_3:+47007735 | None:intergenic |
| GCGGAGCAGAATATTAAAAT+TGG | 0.268594 | 8_3:-47008063 | Msa1291580:CDS |
| TTGGATTCGTTCAGTTAGTC+TGG | 0.301378 | 8_3:-47009645 | Msa1291580:intron |
| CAGTCTGATCCCTGAGTTTG+AGG | 0.317256 | 8_3:-47011369 | Msa1291580:intron |
| TCACCTACTTTCTGGATATT+CGG | 0.318220 | 8_3:-47008494 | Msa1291580:CDS |
| AAATAAGCCAACTATGTTTC+TGG | 0.319387 | 8_3:-47010888 | Msa1291580:CDS |
| ATCTAAGGCTGCTGCGGTTT+AGG | 0.321809 | 8_3:+47012580 | None:intergenic |
| AATATAGGAAAGATGGTGTT+TGG | 0.321846 | 8_3:-47008522 | Msa1291580:intron |
| GCAACCCGGACCCCATTTCC+AGG | 0.353692 | 8_3:-47012424 | Msa1291580:intron |
| CCCTCTTAGCCATGCCTGGC+TGG | 0.355358 | 8_3:-47012446 | Msa1291580:CDS |
| GATAAGAAGAAAGTCCTTCT+TGG | 0.358937 | 8_3:-47008938 | Msa1291580:CDS |
| CCAACTATGTTTCTGGAGAT+TGG | 0.370534 | 8_3:-47010881 | Msa1291580:intron |
| GAGGGACTGATGTCGGAAAC+TGG | 0.381603 | 8_3:-47009603 | Msa1291580:CDS |
| CAGTTAGTCTGGGAAGGACT+TGG | 0.381874 | 8_3:-47009634 | Msa1291580:CDS |
| GAGTAAGGCACCTCAAACTC+AGG | 0.385327 | 8_3:+47011359 | None:intergenic |
| ACATTATGTGCCTCGGCATA+TGG | 0.385428 | 8_3:-47008903 | Msa1291580:CDS |
| GCTCTCACTGTTCACCCTAT+TGG | 0.390767 | 8_3:-47012130 | Msa1291580:intron |
| TTGAACCTGGAAATGGGGTC+CGG | 0.403605 | 8_3:+47012419 | None:intergenic |
| TAATATGAATTTATTTGCCT+TGG | 0.408139 | 8_3:-47007706 | Msa1291580:three_prime_UTR |
| ACAAGGTGGGAAGAGGTTAC+TGG | 0.414639 | 8_3:-47012211 | Msa1291580:CDS |
| GGGTTGAGAGTGTTACTTCA+TGG | 0.417052 | 8_3:-47012265 | Msa1291580:CDS |
| AATTTACTGCAGGAGTTTCA+AGG | 0.417491 | 8_3:-47008118 | Msa1291580:intron |
| GTCTGGGAAGGACTTGGACT+TGG | 0.418424 | 8_3:-47009628 | Msa1291580:CDS |
| AATGCCCTCTTAGCCATGCC+TGG | 0.423510 | 8_3:-47012450 | Msa1291580:CDS |
| TGGCGGGAGTGGTTTACTAT+TGG | 0.424684 | 8_3:+47012615 | None:intergenic |
| ATAGTTGGCTTATTTGTCAA+TGG | 0.432303 | 8_3:+47010896 | None:intergenic |
| GTCTATAAAAGCTGCATATG+AGG | 0.434564 | 8_3:-47008413 | Msa1291580:CDS |
| CCACCTCAAGGTGGGAAACC+TGG | 0.443476 | 8_3:-47011461 | Msa1291580:CDS |
| GGAGAAACAAATGTGGAGAT+TGG | 0.443599 | 8_3:-47008451 | Msa1291580:CDS |
| AGAAGATGAAATTACCAATA+GGG | 0.451407 | 8_3:+47012116 | None:intergenic |
| ATAAGAAGAAAGTCCTTCTT+GGG | 0.451631 | 8_3:-47008937 | Msa1291580:CDS |
| TGGGAAGGACTTGGACTTGG+AGG | 0.457377 | 8_3:-47009625 | Msa1291580:CDS |
| TTCCTCAATTTAGATTACTC+TGG | 0.461039 | 8_3:-47010936 | Msa1291580:intron |
| GTTGTACATGACATGTTACT+TGG | 0.462919 | 8_3:-47012657 | Msa1291580:exon |
| ACAAGATGCTGCTCAAGTTA+TGG | 0.465443 | 8_3:-47009818 | Msa1291580:CDS |
| CGTATCCAAGGTCCAATCCT+AGG | 0.470362 | 8_3:+47011419 | None:intergenic |
| ATGGCTAAGAGGGCATTGGC+AGG | 0.471091 | 8_3:+47012456 | None:intergenic |
| CAAGGTCCAATCCTAGGATT+CGG | 0.473623 | 8_3:+47011425 | None:intergenic |
| GAAGGACTTGGACTTGGAGG+AGG | 0.478522 | 8_3:-47009622 | Msa1291580:CDS |
| GGGCAGCATTGCCGAATCCT+AGG | 0.481352 | 8_3:-47011436 | Msa1291580:CDS |
| TGGAAGATTATTTGGATACA+AGG | 0.483917 | 8_3:-47012228 | Msa1291580:CDS |
| CCAGCCAGGCATGGCTAAGA+GGG | 0.491015 | 8_3:+47012446 | None:intergenic |
| AGGAAAGATGGTGTTTGGGT+TGG | 0.495625 | 8_3:-47008517 | Msa1291580:CDS |
| TTCTGGATATTCGGTGCCAA+TGG | 0.497093 | 8_3:-47008485 | Msa1291580:CDS |
| TTCGGCAATGCTGCCCATCC+AGG | 0.498257 | 8_3:+47011443 | None:intergenic |
| TGAACCTGGAAATGGGGTCC+GGG | 0.500138 | 8_3:+47012420 | None:intergenic |
| ATATAGGAAAGATGGTGTTT+GGG | 0.501627 | 8_3:-47008521 | Msa1291580:intron |
| TTGGCAGGGTTGATTGAAGC+AGG | 0.506215 | 8_3:+47012471 | None:intergenic |
| GTCCTTCTTGGGATAGGTGG+TGG | 0.506343 | 8_3:-47008926 | Msa1291580:CDS |
| TGCTGCTCAAGTTATGGCTC+AGG | 0.509122 | 8_3:-47009812 | Msa1291580:intron |
| ATTTACTGCAGGAGTTTCAA+GGG | 0.511764 | 8_3:-47008117 | Msa1291580:intron |
| TTTGGATACAAGGTGGGAAG+AGG | 0.512434 | 8_3:-47012218 | Msa1291580:CDS |
| TAGGTAGTACTGAAGACTAC+TGG | 0.514107 | 8_3:-47009846 | Msa1291580:CDS |
| ATACATTTATTATCAATCTA+GGG | 0.514210 | 8_3:+47007736 | None:intergenic |
| ATGTGGAGATTGGAGGAACT+TGG | 0.519523 | 8_3:-47008441 | Msa1291580:CDS |
| ACTCTGGAGGCTACTCATCA+TGG | 0.519543 | 8_3:-47010920 | Msa1291580:CDS |
| TTGGATGATGATGATGAAGA+TGG | 0.524279 | 8_3:+47012526 | None:intergenic |
| TGGCAGAAGAATGCCATCAC+AGG | 0.525499 | 8_3:-47008093 | Msa1291580:CDS |
| CTCAATTTAGATTACTCTGG+AGG | 0.527022 | 8_3:-47010933 | Msa1291580:intron |
| AGGCATGGCTAAGAGGGCAT+TGG | 0.527431 | 8_3:+47012452 | None:intergenic |
| CTCAAGGTGGGAAACCTGGA+TGG | 0.530408 | 8_3:-47011457 | Msa1291580:CDS |
| AAGAAAGTCCTTCTTGGGAT+AGG | 0.531260 | 8_3:-47008932 | Msa1291580:CDS |
| GGTTGAGAGTGTTACTTCAT+GGG | 0.531477 | 8_3:-47012264 | Msa1291580:CDS |
| AGATTATTTGGATACAAGGT+GGG | 0.534032 | 8_3:-47012224 | Msa1291580:CDS |
| CCAATCTCCAGAAACATAGT+TGG | 0.538972 | 8_3:+47010881 | None:intergenic |
| TTTGGTTGAACCTGGAAATG+GGG | 0.542428 | 8_3:+47012414 | None:intergenic |
| CATCCAGGTTTCCCACCTTG+AGG | 0.543026 | 8_3:+47011458 | None:intergenic |
| TGGATTCGTTCAGTTAGTCT+GGG | 0.543480 | 8_3:-47009644 | Msa1291580:intron |
| ACTGCAGGAGTTTCAAGGGC+TGG | 0.545446 | 8_3:-47008113 | Msa1291580:intron |
| GGAGTGGTTTACTATTGGAC+AGG | 0.549286 | 8_3:+47012620 | None:intergenic |
| TTCGTTCAGTTAGTCTGGGA+AGG | 0.551066 | 8_3:-47009640 | Msa1291580:intron |
| GCATTGCCGAATCCTAGGAT+TGG | 0.555307 | 8_3:-47011431 | Msa1291580:CDS |
| ACTTCATGGGAAGAGTATAG+TGG | 0.562543 | 8_3:-47012251 | Msa1291580:CDS |
| AATTCGCCAAATAAATACAT+AGG | 0.564283 | 8_3:+47007762 | None:intergenic |
| CTCCGCGAGGAATCCTGTGA+TGG | 0.566946 | 8_3:+47008080 | None:intergenic |
| CTTGGAGGAGGGACTGATGT+CGG | 0.567295 | 8_3:-47009610 | Msa1291580:CDS |
| ATGATGATGAAGATGGGTTG+AGG | 0.570135 | 8_3:+47012533 | None:intergenic |
| TGTGCAATAATTTCGCCACC+AGG | 0.572204 | 8_3:+47008373 | None:intergenic |
| CTTTGACTCAAATATTGCCA+AGG | 0.574252 | 8_3:+47007689 | None:intergenic |
| AGGGTTGATTGAAGCAGGAT+CGG | 0.574754 | 8_3:+47012476 | None:intergenic |
| CCAGGTTTCCCACCTTGAGG+TGG | 0.575933 | 8_3:+47011461 | None:intergenic |
| AAGGACTTGGACTTGGAGGA+GGG | 0.577258 | 8_3:-47009621 | Msa1291580:CDS |
| GCAACAATTGTCTTTCATCA+CGG | 0.578990 | 8_3:+47012682 | None:intergenic |
| GCACCGAATATCCAGAAAGT+AGG | 0.580008 | 8_3:+47008491 | None:intergenic |
| GGAGTTCCACATTTGCGTGA+AGG | 0.582715 | 8_3:-47011491 | Msa1291580:CDS |
| GAAACAAATGTGGAGATTGG+AGG | 0.582932 | 8_3:-47008448 | Msa1291580:CDS |
| GTGCCAATGGAAGATCCAAA+AGG | 0.584393 | 8_3:-47008472 | Msa1291580:CDS |
| AAAGTCCTTCTTGGGATAGG+TGG | 0.587842 | 8_3:-47008929 | Msa1291580:CDS |
| AAGATTATTTGGATACAAGG+TGG | 0.591901 | 8_3:-47012225 | Msa1291580:CDS |
| ACATCACCTTCACGCAAATG+TGG | 0.592124 | 8_3:+47011485 | None:intergenic |
| TGGCTAAGAGGGCATTGGCA+GGG | 0.593618 | 8_3:+47012457 | None:intergenic |
| GTGGTGGACATTATGTGCCT+CGG | 0.594821 | 8_3:-47008910 | Msa1291580:CDS |
| CTGATGTCGGAAACTGGAGC+AGG | 0.596002 | 8_3:-47009597 | Msa1291580:intron |
| AATGTGCAGATTGCAGACAT+AGG | 0.599856 | 8_3:-47007984 | Msa1291580:three_prime_UTR |
| CGAATCCTAGGATTGGACCT+TGG | 0.608468 | 8_3:-47011424 | Msa1291580:CDS |
| GAAGGTGATGTTCCACCTCA+AGG | 0.608473 | 8_3:-47011473 | Msa1291580:CDS |
| ATAGGGTGAACAGTGAGAGC+AGG | 0.610959 | 8_3:+47012133 | None:intergenic |
| GTGATGTTCCACCTCAAGGT+GGG | 0.625555 | 8_3:-47011469 | Msa1291580:CDS |
| TCAAGGTGGGAAACCTGGAT+GGG | 0.628133 | 8_3:-47011456 | Msa1291580:CDS |
| TCTTCATCATCATCATCCAA+TGG | 0.634449 | 8_3:-47012523 | Msa1291580:CDS |
| GTCCACCACCTATCCCAAGA+AGG | 0.636477 | 8_3:+47008924 | None:intergenic |
| TTGATGATCTAAGGCTGCTG+CGG | 0.636578 | 8_3:+47012574 | None:intergenic |
| TCCAAAAGGAGAAACAAATG+TGG | 0.637066 | 8_3:-47008458 | Msa1291580:CDS |
| TGGATGATGATGATGAAGAT+GGG | 0.639594 | 8_3:+47012527 | None:intergenic |
| AGTAAGGCACCTCAAACTCA+GGG | 0.641613 | 8_3:+47011360 | None:intergenic |
| GCAACGAGAAGAGACACCAT+TGG | 0.644130 | 8_3:+47012507 | None:intergenic |
| TCATGGGAAGAGTATAGTGG+TGG | 0.644528 | 8_3:-47012248 | Msa1291580:CDS |
| AACACTATATCCATATGCCG+AGG | 0.673664 | 8_3:+47008893 | None:intergenic |
| GGTGATGTTCCACCTCAAGG+TGG | 0.677793 | 8_3:-47011470 | Msa1291580:CDS |
| TGCCATCACAGGATTCCTCG+CGG | 0.720531 | 8_3:-47008082 | Msa1291580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAAAAAAAAAAAGAA+AGG | + | chr8_3:47007972-47007991 | None:intergenic | 10.0% |
| !! | AAAATAAAGTAAAAAATATG+TGG | + | chr8_3:47010382-47010401 | None:intergenic | 10.0% |
| !! | AAAAAAAAAGAAAGGAAAAA+GGG | + | chr8_3:47007964-47007983 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAGAAAGGAAAA+AGG | + | chr8_3:47007965-47007984 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGTTGTTTTTTGT+TGG | - | chr8_3:47008014-47008033 | Msa1291580:three_prime_UTR | 15.0% |
| !!! | TTTTTTTGTTGTTTTTTGTT+GGG | - | chr8_3:47008015-47008034 | Msa1291580:three_prime_UTR | 15.0% |
| !! | AAAAAGTAAGTAAAGTTTAT+AGG | - | chr8_3:47008576-47008595 | Msa1291580:intron | 15.0% |
| !! | AAAAGTAAGTAAAGTTTATA+GGG | - | chr8_3:47008577-47008596 | Msa1291580:intron | 15.0% |
| !! | TAATTTAATTCCAATTTGAA+CGG | - | chr8_3:47009033-47009052 | Msa1291580:intron | 15.0% |
| !!! | AAATATTATTTAAAAGCGTA+TGG | + | chr8_3:47010972-47010991 | None:intergenic | 15.0% |
| !!! | TTTGATTTTATTTTATCTTC+AGG | - | chr8_3:47011204-47011223 | Msa1291580:intron | 15.0% |
| !!! | AAATTTTCATCAATTTTAGA+AGG | + | chr8_3:47011348-47011367 | None:intergenic | 15.0% |
| !!! | ATTGATGAAAATTTTCTAAA+CGG | - | chr8_3:47011354-47011373 | Msa1291580:intron | 15.0% |
| !!! | TTATAATTGAATTTTCTGAT+TGG | - | chr8_3:47011501-47011520 | Msa1291580:intron | 15.0% |
| !!! | GTTTGATATATGTTTTTTTT+TGG | - | chr8_3:47012135-47012154 | Msa1291580:CDS | 15.0% |
| !! | ATACATTTATTATCAATCTA+GGG | + | chr8_3:47012616-47012635 | None:intergenic | 15.0% |
| !! | AAAAAAAAGAAAGGAAAAAG+GGG | + | chr8_3:47007963-47007982 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTGTTTTTTGTTG+GGG | - | chr8_3:47008016-47008035 | Msa1291580:three_prime_UTR | 20.0% |
| !!! | TTAAAATCTTGTGTTTTTGT+AGG | - | chr8_3:47008837-47008856 | Msa1291580:intron | 20.0% |
| !! | AATTTAATTCCAATTTGAAC+GGG | - | chr8_3:47009034-47009053 | Msa1291580:intron | 20.0% |
| !! | GCTTAATATATTATGTTACA+TGG | - | chr8_3:47009221-47009240 | Msa1291580:intron | 20.0% |
| !!! | TATCAATCTAAAATACATCT+AGG | + | chr8_3:47009513-47009532 | None:intergenic | 20.0% |
| !! | ATCTGAAAACAAAATAATGA+AGG | + | chr8_3:47009626-47009645 | None:intergenic | 20.0% |
| !! | AAGATGAATATGAATTGAAA+AGG | + | chr8_3:47009679-47009698 | None:intergenic | 20.0% |
| !! | TATTGAAAACCAACAAAATA+TGG | + | chr8_3:47009740-47009759 | None:intergenic | 20.0% |
| !! | TTTACTGAAATGATATTGTT+TGG | - | chr8_3:47010685-47010704 | Msa1291580:intron | 20.0% |
| !!! | GAAAATATTTTGTTGTTAGT+TGG | - | chr8_3:47010792-47010811 | Msa1291580:intron | 20.0% |
| !! | ATGAACTAATTTGAGAAAAT+AGG | - | chr8_3:47011011-47011030 | Msa1291580:intron | 20.0% |
| !! | TGAACTAATTTGAGAAAATA+GGG | - | chr8_3:47011012-47011031 | Msa1291580:intron | 20.0% |
| !! | CAATTATAAAGTCACTAAAA+TGG | + | chr8_3:47011490-47011509 | None:intergenic | 20.0% |
| !! | TAAAACTCAAGACTAAAAAA+AGG | + | chr8_3:47011706-47011725 | None:intergenic | 20.0% |
| !! | TATGTTCCTATGTATTTATT+TGG | - | chr8_3:47012581-47012600 | Msa1291580:CDS | 20.0% |
| !! | CATACATTTATTATCAATCT+AGG | + | chr8_3:47012617-47012636 | None:intergenic | 20.0% |
| !! | TAATATGAATTTATTTGCCT+TGG | - | chr8_3:47012643-47012662 | Msa1291580:CDS | 20.0% |
| !!! | AAAGTGATTTTGATGATCTA+AGG | + | chr8_3:47007787-47007806 | None:intergenic | 25.0% |
| !!! | ATGAAAAGTTTTGTGAATGA+AGG | - | chr8_3:47008063-47008082 | Msa1291580:CDS | 25.0% |
| !!! | TGAAAAGTTTTGTGAATGAA+GGG | - | chr8_3:47008064-47008083 | Msa1291580:CDS | 25.0% |
| ! | AGAAGATGAAATTACCAATA+GGG | + | chr8_3:47008236-47008255 | None:intergenic | 25.0% |
| !! | TAGTTTCTGTCCAAATTTTT+CGG | - | chr8_3:47008487-47008506 | Msa1291580:CDS | 25.0% |
| !!! | AATACTAAAAAGTTGGTACA+AGG | - | chr8_3:47008537-47008556 | Msa1291580:intron | 25.0% |
| ! | AAATCATTAAACAACCCAAA+TGG | - | chr8_3:47008797-47008816 | Msa1291580:intron | 25.0% |
| ! | AGAAACATAAGAAAAGAGTA+AGG | + | chr8_3:47009008-47009027 | None:intergenic | 25.0% |
| ! | AGATAAAACTAGAACACAAA+AGG | + | chr8_3:47009132-47009151 | None:intergenic | 25.0% |
| !! | TGAATATTTCTGCAAATACA+TGG | - | chr8_3:47009174-47009193 | Msa1291580:intron | 25.0% |
| ! | ATGCAATATGCTTATAATAG+AGG | + | chr8_3:47009548-47009567 | None:intergenic | 25.0% |
| ! | TCAATACGAAATGAGATATT+AGG | - | chr8_3:47009754-47009773 | Msa1291580:intron | 25.0% |
| !! | TGTTAGTGCTCAATTTTTAT+TGG | - | chr8_3:47009924-47009943 | Msa1291580:intron | 25.0% |
| ! | TTGTCAAATAGTGACTATAA+CGG | - | chr8_3:47010017-47010036 | Msa1291580:intron | 25.0% |
| ! | TTATACTAAATACCATATCG+TGG | + | chr8_3:47010082-47010101 | None:intergenic | 25.0% |
| !! | TATAAAGTGTTACCAAATAC+CGG | - | chr8_3:47010097-47010116 | Msa1291580:intron | 25.0% |
| ! | TTATACTAAATACCATATCG+TGG | + | chr8_3:47010082-47010101 | None:intergenic | 25.0% |
| !! | TATAAAGTGTTACCAAATAC+CGG | - | chr8_3:47010097-47010116 | Msa1291580:intron | 25.0% |
| !!! | TTTTGAAATTTTGACCTTGA+TGG | - | chr8_3:47010931-47010950 | Msa1291580:intron | 25.0% |
| !! | ATTATTTAAAAGCGTATGGA+AGG | + | chr8_3:47010968-47010987 | None:intergenic | 25.0% |
| ! | AAGTACTTATGTCAATAGAT+GGG | + | chr8_3:47011083-47011102 | None:intergenic | 25.0% |
| ! | TGCACACTTAAATAGATTAT+GGG | - | chr8_3:47011539-47011558 | Msa1291580:intron | 25.0% |
| ! | AATTACATTGATGAACAACA+TGG | - | chr8_3:47011566-47011585 | Msa1291580:intron | 25.0% |
| ! | ATTACATTGATGAACAACAT+GGG | - | chr8_3:47011567-47011586 | Msa1291580:intron | 25.0% |
| !! | TTTTTGCAATATAGGAAAGA+TGG | - | chr8_3:47011820-47011839 | Msa1291580:intron | 25.0% |
| !! | CTCTATTAGAGATAATTTTC+AGG | - | chr8_3:47012533-47012552 | Msa1291580:CDS | 25.0% |
| ! | AATTCGCCAAATAAATACAT+AGG | + | chr8_3:47012590-47012609 | None:intergenic | 25.0% |
| ! | GGGGTGTTTATAATGAATTT+AGG | - | chr8_3:47008035-47008054 | Msa1291580:exon | 30.0% |
| ! | TATAGTGGTGGAAGATTATT+TGG | - | chr8_3:47008113-47008132 | Msa1291580:intron | 30.0% |
| TGGAAGATTATTTGGATACA+AGG | - | chr8_3:47008121-47008140 | Msa1291580:intron | 30.0% | |
| AAGATTATTTGGATACAAGG+TGG | - | chr8_3:47008124-47008143 | Msa1291580:intron | 30.0% | |
| AGATTATTTGGATACAAGGT+GGG | - | chr8_3:47008125-47008144 | Msa1291580:intron | 30.0% | |
| GAGAAGATGAAATTACCAAT+AGG | + | chr8_3:47008237-47008256 | None:intergenic | 30.0% | |
| ! | TCGCAATTTTTGAATTCGAA+TGG | + | chr8_3:47008514-47008533 | None:intergenic | 30.0% |
| GCGACTAAATACTAAAAAGT+TGG | - | chr8_3:47008530-47008549 | Msa1291580:intron | 30.0% | |
| !! | GTGTTTGGTAATGATATGTT+AGG | - | chr8_3:47008664-47008683 | Msa1291580:intron | 30.0% |
| ! | ACTTCTGAAAAATATTGCTC+AGG | - | chr8_3:47008953-47008972 | Msa1291580:intron | 30.0% |
| AAAAGAAAACCCGTTCAAAT+TGG | + | chr8_3:47009046-47009065 | None:intergenic | 30.0% | |
| ! | CATAAAAAGTATGCAACAAG+TGG | + | chr8_3:47009390-47009409 | None:intergenic | 30.0% |
| TTCCTCAATTTAGATTACTC+TGG | - | chr8_3:47009413-47009432 | Msa1291580:intron | 30.0% | |
| ! | ATAGTTGGCTTATTTGTCAA+TGG | + | chr8_3:47009456-47009475 | None:intergenic | 30.0% |
| AAATAAGCCAACTATGTTTC+TGG | - | chr8_3:47009461-47009480 | Msa1291580:intron | 30.0% | |
| ! | CAATCTAAAATACATCTAGG+AGG | + | chr8_3:47009510-47009529 | None:intergenic | 30.0% |
| AAGAACTTAAACCATGTTCA+CGG | + | chr8_3:47009598-47009617 | None:intergenic | 30.0% | |
| AAATTACTGGAACTTTCATC+AGG | + | chr8_3:47009705-47009724 | None:intergenic | 30.0% | |
| ! | AAGAAGGTTCCATATTTTGT+TGG | - | chr8_3:47009728-47009747 | Msa1291580:intron | 30.0% |
| ! | GCTTCATTTTATTGCTCTTT+TGG | + | chr8_3:47009782-47009801 | None:intergenic | 30.0% |
| !! | GTGTTGTTTAAAATCCTGAA+TGG | + | chr8_3:47009880-47009899 | None:intergenic | 30.0% |
| ! | TATTTGACAACACTGGTTAA+GGG | + | chr8_3:47010007-47010026 | None:intergenic | 30.0% |
| ! | ATAAAGTGTTACCAAATACC+GGG | - | chr8_3:47010098-47010117 | Msa1291580:intron | 30.0% |
| ! | ATAAAGTGTTACCAAATACC+GGG | - | chr8_3:47010098-47010117 | Msa1291580:intron | 30.0% |
| CTAGAAAAACTCTACAAATG+TGG | + | chr8_3:47010329-47010348 | None:intergenic | 30.0% | |
| !!! | CTTTATTTTGAAGTAGTCTG+TGG | - | chr8_3:47010393-47010412 | Msa1291580:intron | 30.0% |
| ATTTCAGCTAGTATAACAAC+TGG | - | chr8_3:47010468-47010487 | Msa1291580:intron | 30.0% | |
| CAACTGGATAATTCTGATAT+AGG | - | chr8_3:47010484-47010503 | Msa1291580:intron | 30.0% | |
| TTCAAAATCAGAGGATCATA+TGG | + | chr8_3:47010918-47010937 | None:intergenic | 30.0% | |
| GGTCAAAATTTCAAAATCAG+AGG | + | chr8_3:47010927-47010946 | None:intergenic | 30.0% | |
| CAAGTACTTATGTCAATAGA+TGG | + | chr8_3:47011084-47011103 | None:intergenic | 30.0% | |
| TCAATGCAGAGACAATATTT+AGG | - | chr8_3:47011295-47011314 | Msa1291580:intron | 30.0% | |
| ATAAGAAGAAAGTCCTTCTT+GGG | - | chr8_3:47011412-47011431 | Msa1291580:CDS | 30.0% | |
| CTGCACACTTAAATAGATTA+TGG | - | chr8_3:47011538-47011557 | Msa1291580:intron | 30.0% | |
| TATATTGCAAAAAGCAAAGC+AGG | + | chr8_3:47011813-47011832 | None:intergenic | 30.0% | |
| !!! | TGCTTTGCTTTTTGCAATAT+AGG | - | chr8_3:47011812-47011831 | Msa1291580:intron | 30.0% |
| AATATAGGAAAGATGGTGTT+TGG | - | chr8_3:47011827-47011846 | Msa1291580:intron | 30.0% | |
| ATATAGGAAAGATGGTGTTT+GGG | - | chr8_3:47011828-47011847 | Msa1291580:intron | 30.0% | |
| TGCAAACAATTGATTACAGA+AGG | + | chr8_3:47012034-47012053 | None:intergenic | 30.0% | |
| ! | TACGATTTGAAACAGATAAC+AGG | - | chr8_3:47012165-47012184 | Msa1291580:CDS | 30.0% |
| TTTACCCTAAAATTTACTGC+AGG | - | chr8_3:47012221-47012240 | Msa1291580:CDS | 30.0% | |
| ! | AACTCCTGCAGTAAATTTTA+GGG | + | chr8_3:47012228-47012247 | None:intergenic | 30.0% |
| ! | AAACTCCTGCAGTAAATTTT+AGG | + | chr8_3:47012229-47012248 | None:intergenic | 30.0% |
| GACACTCAAAAGAAGTTATT+TGG | + | chr8_3:47012316-47012335 | None:intergenic | 30.0% | |
| !! | AATCACTTTTAGTGCAAATC+TGG | + | chr8_3:47012415-47012434 | None:intergenic | 30.0% |
| !! | TAATTTTCAGGCACTTTAGA+AGG | - | chr8_3:47012545-47012564 | Msa1291580:CDS | 30.0% |
| GCAACAATTGTCTTTCATCA+CGG | + | chr8_3:47007670-47007689 | None:intergenic | 35.0% | |
| GTTGTACATGACATGTTACT+TGG | - | chr8_3:47007692-47007711 | Msa1291580:three_prime_UTR | 35.0% | |
| ! | TGGATGATGATGATGAAGAT+GGG | + | chr8_3:47007825-47007844 | None:intergenic | 35.0% |
| ! | TTGGATGATGATGATGAAGA+TGG | + | chr8_3:47007826-47007845 | None:intergenic | 35.0% |
| TCTTCATCATCATCATCCAA+TGG | - | chr8_3:47007826-47007845 | Msa1291580:three_prime_UTR | 35.0% | |
| !! | TTTTGGTTGAACCTGGAAAT+GGG | + | chr8_3:47007939-47007958 | None:intergenic | 35.0% |
| !!! | TTTTTGGTTGAACCTGGAAA+TGG | + | chr8_3:47007940-47007959 | None:intergenic | 35.0% |
| ! | AGAAAGGAAAAAGGGGTTTT+TGG | + | chr8_3:47007956-47007975 | None:intergenic | 35.0% |
| AACCTACGAATTACGAAACA+TGG | - | chr8_3:47008304-47008323 | Msa1291580:intron | 35.0% | |
| TTGAACGTAGCTACATATGT+TGG | - | chr8_3:47008391-47008410 | Msa1291580:CDS | 35.0% | |
| TTCGAATGGACCGAAAAATT+TGG | + | chr8_3:47008500-47008519 | None:intergenic | 35.0% | |
| ! | TGAAGTGAAAAGAGTGTGTT+TGG | - | chr8_3:47008649-47008668 | Msa1291580:intron | 35.0% |
| TGTGTGAATGTTGTACACTT+TGG | - | chr8_3:47008766-47008785 | Msa1291580:intron | 35.0% | |
| GTGTGAATGTTGTACACTTT+GGG | - | chr8_3:47008767-47008786 | Msa1291580:intron | 35.0% | |
| TGTGAATGTTGTACACTTTG+GGG | - | chr8_3:47008768-47008787 | Msa1291580:intron | 35.0% | |
| TCATTAAACAACCCAAATGG+TGG | - | chr8_3:47008800-47008819 | Msa1291580:intron | 35.0% | |
| !! | TTTTTCAGAAGTCGTATCCA+AGG | + | chr8_3:47008945-47008964 | None:intergenic | 35.0% |
| TAACAATCAACAGGAAACTG+AGG | + | chr8_3:47009073-47009092 | None:intergenic | 35.0% | |
| CAACACAAGTAACAATCAAC+AGG | + | chr8_3:47009082-47009101 | None:intergenic | 35.0% | |
| ! | TTGTTACTTGTGTTGTGTGA+TGG | - | chr8_3:47009087-47009106 | Msa1291580:intron | 35.0% |
| TTAAGCCATCTTCCTCAAAT+GGG | + | chr8_3:47009207-47009226 | None:intergenic | 35.0% | |
| ATTAAGCCATCTTCCTCAAA+TGG | + | chr8_3:47009208-47009227 | None:intergenic | 35.0% | |
| CTCCAGAGTAATCTAAATTG+AGG | + | chr8_3:47009418-47009437 | None:intergenic | 35.0% | |
| CTCAATTTAGATTACTCTGG+AGG | - | chr8_3:47009416-47009435 | Msa1291580:intron | 35.0% | |
| CATACATCATTTGTGCGTAA+CGG | - | chr8_3:47009829-47009848 | Msa1291580:CDS | 35.0% | |
| ATACATCATTTGTGCGTAAC+GGG | - | chr8_3:47009830-47009849 | Msa1291580:CDS | 35.0% | |
| GAAATAGCCAACTCATCATT+TGG | - | chr8_3:47009964-47009983 | Msa1291580:intron | 35.0% | |
| ! | ATTTGACAACACTGGTTAAG+GGG | + | chr8_3:47010006-47010025 | None:intergenic | 35.0% |
| ! | CTATTTGACAACACTGGTTA+AGG | + | chr8_3:47010008-47010027 | None:intergenic | 35.0% |
| TAGTCACTATTTGACAACAC+TGG | + | chr8_3:47010014-47010033 | None:intergenic | 35.0% | |
| ! | TAAAGTGTTACCAAATACCG+GGG | - | chr8_3:47010099-47010118 | Msa1291580:intron | 35.0% |
| ! | TAAAGTGTTACCAAATACCG+GGG | - | chr8_3:47010099-47010118 | Msa1291580:intron | 35.0% |
| AGAAAGAGATATCAGGTTTG+GGG | + | chr8_3:47010244-47010263 | None:intergenic | 35.0% | |
| CAGAAAGAGATATCAGGTTT+GGG | + | chr8_3:47010245-47010264 | None:intergenic | 35.0% | |
| ACAGAAAGAGATATCAGGTT+TGG | + | chr8_3:47010246-47010265 | None:intergenic | 35.0% | |
| !! | TATCACTTTTGTTTGATGCC+TGG | - | chr8_3:47010277-47010296 | Msa1291580:intron | 35.0% |
| AAACTCTACAAATGTGGACA+TGG | + | chr8_3:47010323-47010342 | None:intergenic | 35.0% | |
| TGTTAGTTGGCATTCTTGTT+TGG | - | chr8_3:47010805-47010824 | Msa1291580:intron | 35.0% | |
| GACACATGCAAAAGATGTTA+AGG | + | chr8_3:47010849-47010868 | None:intergenic | 35.0% | |
| AGGAATAGTATAGTCCATCA+AGG | + | chr8_3:47010948-47010967 | None:intergenic | 35.0% | |
| TATTGACATAAGTACTTGCG+AGG | - | chr8_3:47011086-47011105 | Msa1291580:intron | 35.0% | |
| GATAAGAAGAAAGTCCTTCT+TGG | - | chr8_3:47011411-47011430 | Msa1291580:CDS | 35.0% | |
| ! | TGAATTTTCTGATTGGCGAA+AGG | - | chr8_3:47011508-47011527 | Msa1291580:intron | 35.0% |
| ! | GAATTTTCTGATTGGCGAAA+GGG | - | chr8_3:47011509-47011528 | Msa1291580:intron | 35.0% |
| AGGCTAAAGTAGTCTAACTA+AGG | + | chr8_3:47011632-47011651 | None:intergenic | 35.0% | |
| GATGTGTTGCATATGAAATG+AGG | + | chr8_3:47011652-47011671 | None:intergenic | 35.0% | |
| TCACCTACTTTCTGGATATT+CGG | - | chr8_3:47011855-47011874 | Msa1291580:intron | 35.0% | |
| TCCAAAAGGAGAAACAAATG+TGG | - | chr8_3:47011891-47011910 | Msa1291580:intron | 35.0% | |
| !! | TCCACATTTGTTTCTCCTTT+TGG | + | chr8_3:47011895-47011914 | None:intergenic | 35.0% |
| GTCTATAAAAGCTGCATATG+AGG | - | chr8_3:47011936-47011955 | Msa1291580:intron | 35.0% | |
| ! | ATGCTCGTTAAGCTTACTTT+TGG | + | chr8_3:47012008-47012027 | None:intergenic | 35.0% |
| AATTTACTGCAGGAGTTTCA+AGG | - | chr8_3:47012231-47012250 | Msa1291580:CDS | 35.0% | |
| ATTTACTGCAGGAGTTTCAA+GGG | - | chr8_3:47012232-47012251 | Msa1291580:CDS | 35.0% | |
| GCGGAGCAGAATATTAAAAT+TGG | - | chr8_3:47012286-47012305 | Msa1291580:CDS | 35.0% | |
| !!! | CTTTTGAGTGTCGATTTAAG+AGG | - | chr8_3:47012324-47012343 | Msa1291580:intron | 35.0% |
| CTTTGACTCAAATATTGCCA+AGG | + | chr8_3:47012663-47012682 | None:intergenic | 35.0% | |
| TGCGGTTTAGGTGAAAAAAG+GGG | + | chr8_3:47007760-47007779 | None:intergenic | 40.0% | |
| CTGCGGTTTAGGTGAAAAAA+GGG | + | chr8_3:47007761-47007780 | None:intergenic | 40.0% | |
| !! | ATGATGATGAAGATGGGTTG+AGG | + | chr8_3:47007819-47007838 | None:intergenic | 40.0% |
| TTTGGTTGAACCTGGAAATG+GGG | + | chr8_3:47007938-47007957 | None:intergenic | 40.0% | |
| !! | GGTTGAGAGTGTTACTTCAT+GGG | - | chr8_3:47008085-47008104 | Msa1291580:CDS | 40.0% |
| ! | ACTTCATGGGAAGAGTATAG+TGG | - | chr8_3:47008098-47008117 | Msa1291580:CDS | 40.0% |
| TGCCATGTTTCGTAATTCGT+AGG | + | chr8_3:47008309-47008328 | None:intergenic | 40.0% | |
| TACGAAACATGGCATGTCAT+TGG | - | chr8_3:47008315-47008334 | Msa1291580:intron | 40.0% | |
| TCCACACTTCAAATTGAAGG+CGG | + | chr8_3:47008436-47008455 | None:intergenic | 40.0% | |
| GCATCCACACTTCAAATTGA+AGG | + | chr8_3:47008439-47008458 | None:intergenic | 40.0% | |
| ATTTGATGTCACCACCCAAA+TGG | - | chr8_3:47008707-47008726 | Msa1291580:intron | 40.0% | |
| CAAATCGACTGTGACCATTT+GGG | + | chr8_3:47008724-47008743 | None:intergenic | 40.0% | |
| TCAAATCGACTGTGACCATT+TGG | + | chr8_3:47008725-47008744 | None:intergenic | 40.0% | |
| ATTGTCTGTGACCACCATTT+GGG | + | chr8_3:47008814-47008833 | None:intergenic | 40.0% | |
| AATTGTCTGTGACCACCATT+TGG | + | chr8_3:47008815-47008834 | None:intergenic | 40.0% | |
| CCAATCTCCAGAAACATAGT+TGG | + | chr8_3:47009471-47009490 | None:intergenic | 40.0% | |
| !! | CCAACTATGTTTCTGGAGAT+TGG | - | chr8_3:47009468-47009487 | Msa1291580:intron | 40.0% |
| ! | GTTCCAGTAATTTGCGAAGA+AGG | - | chr8_3:47009712-47009731 | Msa1291580:intron | 40.0% |
| GAACCTTCTTCGCAAATTAC+TGG | + | chr8_3:47009718-47009737 | None:intergenic | 40.0% | |
| ! | TTTGACAACACTGGTTAAGG+GGG | + | chr8_3:47010005-47010024 | None:intergenic | 40.0% |
| ATCTCTGTTGTTCCACGATA+TGG | - | chr8_3:47010067-47010086 | Msa1291580:intron | 40.0% | |
| CCAACACAGAAAGAGATATC+AGG | + | chr8_3:47010251-47010270 | None:intergenic | 40.0% | |
| CCTGATATCTCTTTCTGTGT+TGG | - | chr8_3:47010248-47010267 | Msa1291580:intron | 40.0% | |
| ! | TAGGTAGTACTGAAGACTAC+TGG | - | chr8_3:47010503-47010522 | Msa1291580:intron | 40.0% |
| ACAAGATGCTGCTCAAGTTA+TGG | - | chr8_3:47010531-47010550 | Msa1291580:intron | 40.0% | |
| GTAACAGAATGTATGCACAC+AGG | + | chr8_3:47010616-47010635 | None:intergenic | 40.0% | |
| TTGGATTCGTTCAGTTAGTC+TGG | - | chr8_3:47010704-47010723 | Msa1291580:intron | 40.0% | |
| ! | TGGATTCGTTCAGTTAGTCT+GGG | - | chr8_3:47010705-47010724 | Msa1291580:intron | 40.0% |
| !! | TGGCATTCTTGTTTGGTGTT+TGG | - | chr8_3:47010812-47010831 | Msa1291580:intron | 40.0% |
| GAGCATACAGAAACAACTTG+TGG | - | chr8_3:47011119-47011138 | Msa1291580:intron | 40.0% | |
| AAGAAAGTCCTTCTTGGGAT+AGG | - | chr8_3:47011417-47011436 | Msa1291580:CDS | 40.0% | |
| AACACTATATCCATATGCCG+AGG | + | chr8_3:47011459-47011478 | None:intergenic | 40.0% | |
| ! | TCTCCTTTTGGATCTTCCAT+TGG | + | chr8_3:47011883-47011902 | None:intergenic | 40.0% |
| GGAGAAACAAATGTGGAGAT+TGG | - | chr8_3:47011898-47011917 | Msa1291580:intron | 40.0% | |
| GAAACAAATGTGGAGATTGG+AGG | - | chr8_3:47011901-47011920 | Msa1291580:intron | 40.0% | |
| !! | GCAACTAAATCTGCTTTTCC+TGG | - | chr8_3:47011958-47011977 | Msa1291580:intron | 40.0% |
| !! | ACTAAATCTGCTTTTCCTGG+TGG | - | chr8_3:47011961-47011980 | Msa1291580:intron | 40.0% |
| ! | TTTTAATATTCTGCTCCGCG+AGG | + | chr8_3:47012285-47012304 | None:intergenic | 40.0% |
| AATGTGCAGATTGCAGACAT+AGG | - | chr8_3:47012365-47012384 | Msa1291580:intron | 40.0% | |
| GGAGTGGTTTACTATTGGAC+AGG | + | chr8_3:47007732-47007751 | None:intergenic | 45.0% | |
| TTAGGTGAAAAAAGGGGTGG+CGG | + | chr8_3:47007754-47007773 | None:intergenic | 45.0% | |
| GGTTTAGGTGAAAAAAGGGG+TGG | + | chr8_3:47007757-47007776 | None:intergenic | 45.0% | |
| GCTGCGGTTTAGGTGAAAAA+AGG | + | chr8_3:47007762-47007781 | None:intergenic | 45.0% | |
| ! | TTGATGATCTAAGGCTGCTG+CGG | + | chr8_3:47007778-47007797 | None:intergenic | 45.0% |
| ! | AGGGTTGATTGAAGCAGGAT+CGG | + | chr8_3:47007876-47007895 | None:intergenic | 45.0% |
| !!! | AAGGGGTTTTTGGTTGAACC+TGG | + | chr8_3:47007946-47007965 | None:intergenic | 45.0% |
| !! | GGGTTGAGAGTGTTACTTCA+TGG | - | chr8_3:47008084-47008103 | Msa1291580:CDS | 45.0% |
| ! | TCATGGGAAGAGTATAGTGG+TGG | - | chr8_3:47008101-47008120 | Msa1291580:CDS | 45.0% |
| TTTGGATACAAGGTGGGAAG+AGG | - | chr8_3:47008131-47008150 | Msa1291580:intron | 45.0% | |
| ACTTCAAATTGAAGGCGGTC+TGG | + | chr8_3:47008431-47008450 | None:intergenic | 45.0% | |
| ! | ACCGCCTTCAATTTGAAGTG+TGG | - | chr8_3:47008432-47008451 | Msa1291580:CDS | 45.0% |
| ACATCACCTTCACGCAAATG+TGG | + | chr8_3:47008867-47008886 | None:intergenic | 45.0% | |
| CAAGGTCCAATCCTAGGATT+CGG | + | chr8_3:47008927-47008946 | None:intergenic | 45.0% | |
| ! | AGTAAGGCACCTCAAACTCA+GGG | + | chr8_3:47008992-47009011 | None:intergenic | 45.0% |
| CATGGATCGTTTCCCATTTG+AGG | - | chr8_3:47009192-47009211 | Msa1291580:intron | 45.0% | |
| CGTTTCCCATTTGAGGAAGA+TGG | - | chr8_3:47009199-47009218 | Msa1291580:intron | 45.0% | |
| TCAAGTTCGTACCGTGAACA+TGG | - | chr8_3:47009584-47009603 | Msa1291580:intron | 45.0% | |
| !!! | TGCGTAACGGGTATTTTTGC+TGG | - | chr8_3:47009842-47009861 | Msa1291580:CDS | 45.0% |
| GGTATTGCGAAAGTCCATTC+AGG | - | chr8_3:47009863-47009882 | Msa1291580:intron | 45.0% | |
| GGAAGGACCAAATGATGAGT+TGG | + | chr8_3:47009974-47009993 | None:intergenic | 45.0% | |
| GCTTTAGCAGTTCCACGATA+TGG | - | chr8_3:47010121-47010140 | Msa1291580:intron | 45.0% | |
| TGTGCTAAAACCCCGGTATT+TGG | + | chr8_3:47010166-47010185 | None:intergenic | 45.0% | |
| !! | TGGGGATGAGTTGATCAGTT+GGG | + | chr8_3:47010226-47010245 | None:intergenic | 45.0% |
| !! | TTGGGGATGAGTTGATCAGT+TGG | + | chr8_3:47010227-47010246 | None:intergenic | 45.0% |
| GGACATGGATGAAAGCAGAA+AGG | + | chr8_3:47010308-47010327 | None:intergenic | 45.0% | |
| ! | TTCGTTCAGTTAGTCTGGGA+AGG | - | chr8_3:47010709-47010728 | Msa1291580:intron | 45.0% |
| AATTCTCACACTCTTCCTGC+AGG | - | chr8_3:47011382-47011401 | Msa1291580:CDS | 45.0% | |
| ATTCTCACACTCTTCCTGCA+GGG | - | chr8_3:47011383-47011402 | Msa1291580:CDS | 45.0% | |
| CTTCTTATCATTCTCCCTGC+AGG | + | chr8_3:47011400-47011419 | None:intergenic | 45.0% | |
| AAAGTCCTTCTTGGGATAGG+TGG | - | chr8_3:47011420-47011439 | Msa1291580:CDS | 45.0% | |
| ACATTATGTGCCTCGGCATA+TGG | - | chr8_3:47011446-47011465 | Msa1291580:CDS | 45.0% | |
| CATGGGAGATAAAACTCCAC+TGG | - | chr8_3:47011584-47011603 | Msa1291580:intron | 45.0% | |
| CTCCACTGGAATGAAGACAA+AGG | - | chr8_3:47011598-47011617 | Msa1291580:intron | 45.0% | |
| CACCTTTGTCTTCATTCCAG+TGG | + | chr8_3:47011603-47011622 | None:intergenic | 45.0% | |
| CACTGGAATGAAGACAAAGG+TGG | - | chr8_3:47011601-47011620 | Msa1291580:intron | 45.0% | |
| AGGAAAGATGGTGTTTGGGT+TGG | - | chr8_3:47011832-47011851 | Msa1291580:intron | 45.0% | |
| GCACCGAATATCCAGAAAGT+AGG | + | chr8_3:47011861-47011880 | None:intergenic | 45.0% | |
| !! | TTCTGGATATTCGGTGCCAA+TGG | - | chr8_3:47011864-47011883 | Msa1291580:intron | 45.0% |
| GTGCCAATGGAAGATCCAAA+AGG | - | chr8_3:47011877-47011896 | Msa1291580:intron | 45.0% | |
| ATGTGGAGATTGGAGGAACT+TGG | - | chr8_3:47011908-47011927 | Msa1291580:intron | 45.0% | |
| TGTGCAATAATTTCGCCACC+AGG | + | chr8_3:47011979-47011998 | None:intergenic | 45.0% | |
| !! | TTAATTCTTATAAAAAAAAA+TGG | + | chr8_3:47008265-47008284 | None:intergenic | 5.0% |
| !!! | ATTTTCATTTTTTTTATTAA+AGG | + | chr8_3:47011789-47011808 | None:intergenic | 5.0% |
| TGGCGGGAGTGGTTTACTAT+TGG | + | chr8_3:47007737-47007756 | None:intergenic | 50.0% | |
| TAGGTGAAAAAAGGGGTGGC+GGG | + | chr8_3:47007753-47007772 | None:intergenic | 50.0% | |
| ! | ATCTAAGGCTGCTGCGGTTT+AGG | + | chr8_3:47007772-47007791 | None:intergenic | 50.0% |
| GCAACGAGAAGAGACACCAT+TGG | + | chr8_3:47007845-47007864 | None:intergenic | 50.0% | |
| ! | TTGGCAGGGTTGATTGAAGC+AGG | + | chr8_3:47007881-47007900 | None:intergenic | 50.0% |
| TTGAACCTGGAAATGGGGTC+CGG | + | chr8_3:47007933-47007952 | None:intergenic | 50.0% | |
| ACAAGGTGGGAAGAGGTTAC+TGG | - | chr8_3:47008138-47008157 | Msa1291580:intron | 50.0% | |
| ATAGGGTGAACAGTGAGAGC+AGG | + | chr8_3:47008219-47008238 | None:intergenic | 50.0% | |
| GCTCTCACTGTTCACCCTAT+TGG | - | chr8_3:47008219-47008238 | Msa1291580:intron | 50.0% | |
| ! | AAGAGCACACTGCACACACA+CGG | + | chr8_3:47008628-47008647 | None:intergenic | 50.0% |
| ATCGACTGTGACCATTTGGG+TGG | + | chr8_3:47008721-47008740 | None:intergenic | 50.0% | |
| GGAGTTCCACATTTGCGTGA+AGG | - | chr8_3:47008858-47008877 | Msa1291580:intron | 50.0% | |
| GAAGGTGATGTTCCACCTCA+AGG | - | chr8_3:47008876-47008895 | Msa1291580:intron | 50.0% | |
| GTGATGTTCCACCTCAAGGT+GGG | - | chr8_3:47008880-47008899 | Msa1291580:intron | 50.0% | |
| TCAAGGTGGGAAACCTGGAT+GGG | - | chr8_3:47008893-47008912 | Msa1291580:CDS | 50.0% | |
| GCATTGCCGAATCCTAGGAT+TGG | - | chr8_3:47008918-47008937 | Msa1291580:CDS | 50.0% | |
| CGAATCCTAGGATTGGACCT+TGG | - | chr8_3:47008925-47008944 | Msa1291580:CDS | 50.0% | |
| CGTATCCAAGGTCCAATCCT+AGG | + | chr8_3:47008933-47008952 | None:intergenic | 50.0% | |
| CAGTCTGATCCCTGAGTTTG+AGG | - | chr8_3:47008980-47008999 | Msa1291580:intron | 50.0% | |
| ! | GAGTAAGGCACCTCAAACTC+AGG | + | chr8_3:47008993-47009012 | None:intergenic | 50.0% |
| ! | ACTCTGGAGGCTACTCATCA+TGG | - | chr8_3:47009429-47009448 | Msa1291580:intron | 50.0% |
| TTAAGGGGGTAGAGTGAGGA+AGG | + | chr8_3:47009991-47010010 | None:intergenic | 50.0% | |
| ACTGCTAAAGCCCCGGTATT+TGG | + | chr8_3:47010112-47010131 | None:intergenic | 50.0% | |
| CCACTACTGTGCTAAAACCC+CGG | + | chr8_3:47010173-47010192 | None:intergenic | 50.0% | |
| AGTTGATCAGTTGGGGATCG+TGG | + | chr8_3:47010218-47010237 | None:intergenic | 50.0% | |
| !! | GGGGATGAGTTGATCAGTTG+GGG | + | chr8_3:47010225-47010244 | None:intergenic | 50.0% |
| GAAAGCAGAAAGGAGTGACC+AGG | + | chr8_3:47010298-47010317 | None:intergenic | 50.0% | |
| TGCTGCTCAAGTTATGGCTC+AGG | - | chr8_3:47010537-47010556 | Msa1291580:intron | 50.0% | |
| ! | CAGTTAGTCTGGGAAGGACT+TGG | - | chr8_3:47010715-47010734 | Msa1291580:intron | 50.0% |
| AAGGACTTGGACTTGGAGGA+GGG | - | chr8_3:47010728-47010747 | Msa1291580:intron | 50.0% | |
| !! | GTGGTGGACATTATGTGCCT+CGG | - | chr8_3:47011439-47011458 | Msa1291580:CDS | 50.0% |
| !! | TGGGTTGGTCACCTACTTTC+TGG | - | chr8_3:47011847-47011866 | Msa1291580:intron | 50.0% |
| TGGCAGAAGAATGCCATCAC+AGG | - | chr8_3:47012256-47012275 | Msa1291580:CDS | 50.0% | |
| !! | TGGCTAAGAGGGCATTGGCA+GGG | + | chr8_3:47007895-47007914 | None:intergenic | 55.0% |
| !! | ATGGCTAAGAGGGCATTGGC+AGG | + | chr8_3:47007896-47007915 | None:intergenic | 55.0% |
| ! | AGGCATGGCTAAGAGGGCAT+TGG | + | chr8_3:47007900-47007919 | None:intergenic | 55.0% |
| AATGCCCTCTTAGCCATGCC+TGG | - | chr8_3:47007899-47007918 | Msa1291580:three_prime_UTR | 55.0% | |
| TGAACCTGGAAATGGGGTCC+GGG | + | chr8_3:47007932-47007951 | None:intergenic | 55.0% | |
| ATTGAAGGCGGTCTGGTGTC+TGG | + | chr8_3:47008424-47008443 | None:intergenic | 55.0% | |
| AGAGCACACTGCACACACAC+GGG | + | chr8_3:47008627-47008646 | None:intergenic | 55.0% | |
| GGTGATGTTCCACCTCAAGG+TGG | - | chr8_3:47008879-47008898 | Msa1291580:intron | 55.0% | |
| CATCCAGGTTTCCCACCTTG+AGG | + | chr8_3:47008894-47008913 | None:intergenic | 55.0% | |
| CTCAAGGTGGGAAACCTGGA+TGG | - | chr8_3:47008892-47008911 | Msa1291580:intron | 55.0% | |
| CTGGTTAAGGGGGTAGAGTG+AGG | + | chr8_3:47009995-47010014 | None:intergenic | 55.0% | |
| TCGTGGAACTGCTAAAGCCC+CGG | + | chr8_3:47010119-47010138 | None:intergenic | 55.0% | |
| !! | CCGGGGTTTTAGCACAGTAG+TGG | - | chr8_3:47010170-47010189 | Msa1291580:intron | 55.0% |
| GTCTGGGAAGGACTTGGACT+TGG | - | chr8_3:47010721-47010740 | Msa1291580:intron | 55.0% | |
| TGGGAAGGACTTGGACTTGG+AGG | - | chr8_3:47010724-47010743 | Msa1291580:intron | 55.0% | |
| GAAGGACTTGGACTTGGAGG+AGG | - | chr8_3:47010727-47010746 | Msa1291580:intron | 55.0% | |
| CTTGGAGGAGGGACTGATGT+CGG | - | chr8_3:47010739-47010758 | Msa1291580:intron | 55.0% | |
| GAGGGACTGATGTCGGAAAC+TGG | - | chr8_3:47010746-47010765 | Msa1291580:intron | 55.0% | |
| CTGATGTCGGAAACTGGAGC+AGG | - | chr8_3:47010752-47010771 | Msa1291580:intron | 55.0% | |
| GTCCTTCTTGGGATAGGTGG+TGG | - | chr8_3:47011423-47011442 | Msa1291580:CDS | 55.0% | |
| GTCCACCACCTATCCCAAGA+AGG | + | chr8_3:47011428-47011447 | None:intergenic | 55.0% | |
| ACTGCAGGAGTTTCAAGGGC+TGG | - | chr8_3:47012236-47012255 | Msa1291580:CDS | 55.0% | |
| TGCCATCACAGGATTCCTCG+CGG | - | chr8_3:47012267-47012286 | Msa1291580:CDS | 55.0% | |
| !! | GAAAAAAGGGGTGGCGGGAG+TGG | + | chr8_3:47007748-47007767 | None:intergenic | 60.0% |
| CCAGCCAGGCATGGCTAAGA+GGG | + | chr8_3:47007906-47007925 | None:intergenic | 60.0% | |
| CCAGGTTTCCCACCTTGAGG+TGG | + | chr8_3:47008891-47008910 | None:intergenic | 60.0% | |
| CCACCTCAAGGTGGGAAACC+TGG | - | chr8_3:47008888-47008907 | Msa1291580:intron | 60.0% | |
| TTCGGCAATGCTGCCCATCC+AGG | + | chr8_3:47008909-47008928 | None:intergenic | 60.0% | |
| GGGCAGCATTGCCGAATCCT+AGG | - | chr8_3:47008913-47008932 | Msa1291580:CDS | 60.0% | |
| CTCCGCGAGGAATCCTGTGA+TGG | + | chr8_3:47012272-47012291 | None:intergenic | 60.0% | |
| CCCTCTTAGCCATGCCTGGC+TGG | - | chr8_3:47007903-47007922 | Msa1291580:three_prime_UTR | 65.0% | |
| GCCAGCCAGGCATGGCTAAG+AGG | + | chr8_3:47007907-47007926 | None:intergenic | 65.0% | |
| GCAACCCGGACCCCATTTCC+AGG | - | chr8_3:47007925-47007944 | Msa1291580:three_prime_UTR | 65.0% | |
| GCCATGCCTGGCTGGCAACC+CGG | - | chr8_3:47007911-47007930 | Msa1291580:three_prime_UTR | 70.0% | |
| TCCGGGTTGCCAGCCAGGCA+TGG | + | chr8_3:47007915-47007934 | None:intergenic | 70.0% | |
| TGGGGTCCGGGTTGCCAGCC+AGG | + | chr8_3:47007920-47007939 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 47007660 | 47012711 | 47007660 | ID=Msa1291580;Name=Msa1291580 |
| chr8_3 | mRNA | 47007660 | 47012711 | 47007660 | ID=Msa1291580-mRNA-1;Parent=Msa1291580;Name=Msa1291580-mRNA-1;_AED=0.10;_eAED=0.10;_QI=44|1|1|1|1|1|9|381|360 |
| chr8_3 | exon | 47007660 | 47008128 | 47007660 | ID=Msa1291580-mRNA-1:exon:13066;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47008361 | 47008537 | 47008361 | ID=Msa1291580-mRNA-1:exon:13065;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47008893 | 47008967 | 47008893 | ID=Msa1291580-mRNA-1:exon:13064;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47009598 | 47009653 | 47009598 | ID=Msa1291580-mRNA-1:exon:13063;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47009813 | 47009865 | 47009813 | ID=Msa1291580-mRNA-1:exon:13062;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47010882 | 47010945 | 47010882 | ID=Msa1291580-mRNA-1:exon:13061;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47011370 | 47011512 | 47011370 | ID=Msa1291580-mRNA-1:exon:13060;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47012131 | 47012314 | 47012131 | ID=Msa1291580-mRNA-1:exon:13059;Parent=Msa1291580-mRNA-1 |
| chr8_3 | exon | 47012425 | 47012711 | 47012425 | ID=Msa1291580-mRNA-1:exon:13058;Parent=Msa1291580-mRNA-1 |
| chr8_3 | five_prime_UTR | 47012668 | 47012711 | 47012668 | ID=Msa1291580-mRNA-1:five_prime_utr;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47012425 | 47012667 | 47012425 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47012131 | 47012314 | 47012131 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47011370 | 47011512 | 47011370 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47010882 | 47010945 | 47010882 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47009813 | 47009865 | 47009813 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47009598 | 47009653 | 47009598 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47008893 | 47008967 | 47008893 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47008361 | 47008537 | 47008361 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | CDS | 47008041 | 47008128 | 47008041 | ID=Msa1291580-mRNA-1:cds;Parent=Msa1291580-mRNA-1 |
| chr8_3 | three_prime_UTR | 47007660 | 47008040 | 47007660 | ID=Msa1291580-mRNA-1:three_prime_utr;Parent=Msa1291580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
