AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0334350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334350 MtrunA17_Chr2g0317841 92.174 115 9 0 11 125 415 529 4.60e-72 223
Msa0334350 MtrunA17_Chr2g0317821 90.517 116 10 1 11 125 415 530 8.98e-70 218
Msa0334350 MtrunA17_Chr4g0074561 51.648 91 44 0 11 101 422 512 5.41e-27 103
Msa0334350 MtrunA17_Chr4g0042171 60.976 82 30 2 20 99 417 498 1.46e-25 99.8
Msa0334350 MtrunA17_Chr5g0418861 49.412 85 41 2 18 100 7 91 1.76e-25 92.0
Msa0334350 MtrunA17_Chr2g0288071 51.685 89 43 0 11 99 452 540 4.77e-25 98.6
Msa0334350 MtrunA17_Chr3g0090111 48.913 92 46 1 20 110 399 490 5.13e-25 98.2
Msa0334350 MtrunA17_Chr2g0288021 53.012 83 39 0 26 108 434 516 1.82e-24 97.1
Msa0334350 MtrunA17_Chr3g0090131 48.913 92 46 1 20 110 402 493 1.92e-24 96.7
Msa0334350 MtrunA17_Chr4g0074551 40.833 120 64 1 11 123 434 553 6.37e-24 95.5
Msa0334350 MtrunA17_Chr4g0043091 51.852 81 38 1 20 99 421 501 4.16e-22 90.1
Msa0334350 MtrunA17_Chr6g0482951 50.602 83 41 0 17 99 428 510 7.04e-22 89.7
Msa0334350 MtrunA17_Chr6g0482941 50.602 83 41 0 17 99 428 510 7.39e-22 89.4
Msa0334350 MtrunA17_Chr2g0301231 48.148 81 41 1 20 99 310 390 6.03e-21 86.3
Msa0334350 MtrunA17_Chr4g0033311 51.852 81 38 1 20 99 433 513 3.20e-20 84.7
Msa0334350 MtrunA17_Chr4g0006971 45.882 85 44 1 26 108 414 498 1.63e-19 82.8
Msa0334350 MtrunA17_Chr4g0006111 44.186 86 47 1 20 104 443 528 2.91e-19 82.0
Msa0334350 MtrunA17_Chr3g0088441 49.383 81 40 1 20 99 432 512 3.18e-19 82.0
Msa0334350 MtrunA17_Chr4g0006131 43.956 91 49 1 11 99 409 499 4.06e-19 81.6
Msa0334350 MtrunA17_Chr2g0329191 45.679 81 43 1 20 99 427 507 4.96e-19 81.6
Msa0334350 MtrunA17_Chr5g0430451 46.914 81 42 1 20 99 416 496 5.46e-19 81.3
Msa0334350 MtrunA17_Chr4g0033271 43.011 93 52 1 11 102 420 512 6.98e-19 80.9
Msa0334350 MtrunA17_Chr1g0195611 46.835 79 40 1 26 102 412 490 9.83e-19 80.5
Msa0334350 MtrunA17_Chr4g0033201 46.429 84 44 1 20 102 430 513 1.28e-18 80.1
Msa0334350 MtrunA17_Chr5g0428831 45.000 80 42 1 25 102 412 491 7.88e-18 78.2
Msa0334350 MtrunA17_Chr7g0242691 42.353 85 47 1 26 108 418 502 1.03e-17 77.8
Msa0334350 MtrunA17_Chr4g0033321 38.947 95 57 1 18 111 425 519 2.99e-17 76.3
Msa0334350 MtrunA17_Chr4g0033191 42.529 87 49 1 20 105 437 523 5.17e-17 75.9
Msa0334350 MtrunA17_Chr6g0482131 40.000 90 53 1 11 99 421 510 6.31e-17 75.5
Msa0334350 MtrunA17_Chr4g0033401 39.785 93 55 1 20 111 428 520 6.70e-17 75.5
Msa0334350 MtrunA17_Chr2g0329201 43.210 81 45 1 20 99 425 505 1.04e-16 74.7
Msa0334350 MtrunA17_Chr3g0087271 47.945 73 37 1 28 99 436 508 1.75e-16 74.3
Msa0334350 MtrunA17_Chr6g0482071 41.111 90 52 1 11 99 422 511 2.82e-16 73.6
Msa0334350 MtrunA17_Chr2g0329321 41.975 81 46 1 20 99 406 486 2.89e-16 73.6
Msa0334350 MtrunA17_Chr4g0033261 41.111 90 52 1 11 99 402 491 3.01e-16 73.6
Msa0334350 MtrunA17_Chr4g0010501 52.000 75 35 1 26 99 418 492 3.32e-16 73.6
Msa0334350 MtrunA17_Chr4g0033331 44.444 81 44 1 20 99 433 513 3.53e-16 73.2
Msa0334350 MtrunA17_Chr6g0482081 43.373 83 46 1 20 101 431 513 4.54e-16 73.2
Msa0334350 MtrunA17_Chr4g0033231 41.111 90 52 1 11 99 402 491 8.67e-16 72.0
Msa0334350 MtrunA17_Chr7g0242681 41.176 85 47 2 26 108 425 508 9.99e-16 72.0
Msa0334350 MtrunA17_Chr3g0087261 46.575 73 38 1 28 99 435 507 3.34e-15 70.5
Msa0334350 MtrunA17_Chr3g0087201 47.887 71 36 1 31 100 273 343 3.39e-15 70.1
Msa0334350 MtrunA17_Chr4g0033341 36.667 90 56 1 11 99 452 541 4.32e-14 67.4
Msa0334350 MtrunA17_Chr7g0234091 37.037 81 50 1 20 99 451 531 9.77e-13 63.5
Msa0334350 MtrunA17_Chr7g0234111 35.802 81 51 1 20 99 451 531 5.43e-12 61.2
Msa0334350 MtrunA17_Chr7g0227591 46.552 58 28 2 48 104 13 68 7.83e-12 56.6
Msa0334350 MtrunA17_Chr1g0195651 50.943 53 24 1 52 102 1 53 1.49e-11 56.2
Msa0334350 MtrunA17_Chr4g0068871 41.892 74 42 1 28 100 460 533 5.46e-11 58.5
Msa0334350 MtrunA17_Chr7g0234131 34.177 79 51 1 22 99 454 532 5.61e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0334350 AT1G61820.3 49.000 100 48 1 11 110 277 373 1.49e-26 102
Msa0334350 AT1G61820.1 49.000 100 48 1 11 110 416 512 5.30e-26 101
Msa0334350 AT4G21760.1 57.333 75 32 0 25 99 437 511 6.18e-25 98.6
Msa0334350 AT4G21760.2 57.333 75 32 0 25 99 447 521 6.25e-25 98.6
Msa0334350 AT1G61810.5 47.959 98 51 0 11 108 319 416 8.14e-25 97.8
Msa0334350 AT1G61810.1 47.959 98 51 0 11 108 419 516 1.47e-24 97.4
Msa0334350 AT1G26560.1 54.651 86 37 2 20 103 425 510 1.55e-24 97.4
Msa0334350 AT5G36890.1 47.253 91 47 1 21 110 400 490 1.32e-22 92.0
Msa0334350 AT5G36890.2 52.500 80 37 1 21 99 400 479 1.69e-22 91.7
Msa0334350 AT3G18080.1 53.750 80 37 0 20 99 428 507 2.00e-22 91.7
Msa0334350 AT3G60140.1 48.515 101 46 3 24 118 425 525 2.25e-22 91.3
Msa0334350 AT2G44470.3 55.128 78 33 2 25 100 429 506 3.72e-22 90.9
Msa0334350 AT5G54570.2 54.878 82 35 2 20 99 327 408 5.46e-22 90.1
Msa0334350 AT5G54570.1 54.878 82 35 2 20 99 424 505 5.51e-22 90.1
Msa0334350 AT2G44460.2 53.659 82 36 2 21 100 278 359 1.24e-21 89.0
Msa0334350 AT2G44460.1 53.659 82 36 2 21 100 424 505 1.94e-21 89.0
Msa0334350 AT3G62750.6 48.913 92 43 3 15 102 300 391 2.10e-21 88.2
Msa0334350 AT3G62750.5 48.913 92 43 3 15 102 300 391 2.10e-21 88.2
Msa0334350 AT3G62750.1 48.913 92 43 3 15 102 385 476 3.06e-21 88.2
Msa0334350 AT4G27830.2 46.739 92 45 2 15 102 308 399 3.08e-21 87.8
Msa0334350 AT3G62750.2 48.913 92 43 3 15 102 411 502 3.37e-21 88.2
Msa0334350 AT5G24540.1 46.809 94 48 2 11 102 419 512 3.99e-21 87.8
Msa0334350 AT4G27830.1 46.739 92 45 2 15 102 396 487 4.79e-21 87.4
Msa0334350 AT2G44480.5 45.263 95 51 1 11 104 213 307 2.44e-20 84.3
Msa0334350 AT1G61810.3 53.947 76 35 0 11 86 419 494 2.85e-20 85.5
Msa0334350 AT3G18070.7 44.578 83 46 0 17 99 225 307 3.54e-20 84.0
Msa0334350 AT5G24550.1 44.681 94 50 2 11 102 419 512 3.54e-20 85.1
Msa0334350 AT4G27820.2 45.652 92 46 2 15 102 309 400 4.89e-20 84.3
Msa0334350 AT4G27820.3 45.652 92 46 2 15 102 309 400 4.89e-20 84.3
Msa0334350 AT4G27820.1 45.652 92 46 2 15 102 394 485 6.13e-20 84.3
Msa0334350 AT2G44480.2 45.263 95 51 1 11 104 317 411 6.56e-20 84.0
Msa0334350 AT1G02850.5 50.000 86 40 2 20 102 426 511 6.66e-20 84.3
Msa0334350 AT2G44480.1 45.263 95 51 1 11 104 419 513 7.46e-20 84.3
Msa0334350 AT3G18070.2 44.578 83 46 0 17 99 337 419 7.90e-20 84.0
Msa0334350 AT1G02850.2 50.000 86 40 2 20 102 403 488 8.04e-20 84.0
Msa0334350 AT2G44480.3 45.263 95 51 1 11 104 450 544 8.18e-20 84.0
Msa0334350 AT3G18070.1 44.578 83 46 0 17 99 414 496 8.41e-20 84.0
Msa0334350 AT3G18070.3 44.578 83 46 0 17 99 408 490 8.42e-20 84.0
Msa0334350 AT1G02850.1 50.000 86 40 2 20 102 376 461 8.48e-20 84.0
Msa0334350 AT3G60120.1 50.000 76 36 2 26 99 414 489 9.71e-19 80.9
Msa0334350 AT1G02850.4 49.425 87 40 3 20 102 426 512 2.85e-18 79.7
Msa0334350 AT2G44450.2 46.341 82 43 1 25 105 274 355 3.29e-18 79.0
Msa0334350 AT2G44490.1 38.843 121 67 4 11 124 400 520 5.01e-18 79.0
Msa0334350 AT2G44450.1 46.341 82 43 1 25 105 425 506 5.92e-18 79.0
Msa0334350 AT1G45191.1 46.154 91 43 2 15 99 416 506 8.52e-18 78.2
Msa0334350 AT1G60090.2 42.268 97 51 2 28 119 409 505 8.73e-18 78.2
Msa0334350 AT1G45191.6 46.154 91 43 2 15 99 404 494 8.80e-18 78.2
Msa0334350 AT1G45191.4 46.154 91 43 2 15 99 393 483 9.17e-18 78.2
Msa0334350 AT1G45191.2 46.154 91 43 2 15 99 399 489 9.95e-18 78.2
Msa0334350 AT1G60090.1 42.268 97 51 2 28 119 416 512 1.10e-17 78.2
Msa0334350 AT4G22100.1 43.158 95 48 2 15 103 392 486 2.16e-17 77.0
Msa0334350 AT5G44640.1 46.053 76 40 1 26 100 427 502 7.13e-16 72.8
Msa0334350 AT1G75940.1 50.000 80 38 2 26 103 442 521 2.89e-15 71.2
Msa0334350 AT5G42260.1 47.887 71 36 1 26 95 427 497 4.29e-15 70.5
Msa0334350 AT2G25630.1 48.052 77 39 1 25 100 408 484 6.66e-15 70.1
Msa0334350 AT3G62740.1 40.217 92 51 2 15 102 390 481 7.52e-15 70.1
Msa0334350 AT5G25980.2 38.614 101 59 2 20 117 440 540 8.25e-15 69.7
Msa0334350 AT5G28510.1 39.130 92 54 2 11 100 429 520 1.10e-14 69.3
Msa0334350 AT3G60130.3 41.667 84 48 1 25 107 362 445 6.45e-14 67.4
Msa0334350 AT3G60130.2 41.667 84 48 1 25 107 373 456 7.09e-14 67.0
Msa0334350 AT3G60130.1 41.667 84 48 1 25 107 425 508 8.21e-14 67.0
Msa0334350 AT5G26000.1 41.379 87 48 2 28 111 437 523 1.26e-13 66.6
Msa0334350 AT1G51470.1 37.778 90 55 1 11 99 420 509 1.41e-13 66.2
Msa0334350 AT1G52400.3 43.529 85 46 2 28 110 442 526 2.85e-13 65.5
Msa0334350 AT1G52400.1 43.529 85 46 2 28 110 442 526 2.85e-13 65.5
Msa0334350 AT2G32860.2 40.260 77 44 2 27 101 497 573 9.05e-13 63.9
Msa0334350 AT1G47600.1 37.778 90 55 1 11 99 420 509 9.08e-13 63.9
Msa0334350 AT1G47600.2 37.778 90 55 1 11 99 419 508 9.17e-13 63.9
Msa0334350 AT2G32860.1 40.260 77 44 2 27 101 496 572 9.59e-13 63.9
Msa0334350 AT3G21370.1 44.737 76 40 2 26 99 436 511 1.28e-12 63.5
Msa0334350 AT1G66280.1 41.758 91 51 2 11 99 420 510 1.57e-12 63.2
Msa0334350 AT3G09260.1 39.130 92 54 2 11 100 420 511 1.73e-11 60.5
Msa0334350 AT3G03640.1 37.500 96 58 2 11 104 422 517 4.12e-11 59.3
Msa0334350 AT1G66270.2 40.659 91 52 2 11 99 418 508 4.52e-11 59.3
Msa0334350 AT1G66270.1 45.946 74 38 2 28 99 437 510 4.66e-11 58.9

Find 38 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAACACCATATTTATTTA+AGG 0.097165 2_4:-52670259 Msa0334350:three_prime_UTR
CAACATACTATCTATTATTA+AGG 0.160706 2_4:-52670411 Msa0334350:three_prime_UTR
GATCACTCAGAACTTATTTA+AGG 0.181353 2_4:-52670038 Msa0334350:three_prime_UTR
GTGAATTTCACTATTAAAAT+AGG 0.186884 2_4:-52670379 Msa0334350:three_prime_UTR
CCCATGTATATTACAGAAAA+TGG 0.218730 2_4:-52671044 Msa0334350:five_prime_UTR
CTTGCTCAACTCTTCTATAT+TGG 0.251613 2_4:+52670526 None:intergenic
ATCTACACCTTAAATAAATA+TGG 0.315296 2_4:+52670252 None:intergenic
TAAAATAGGTTGATTCTGTT+TGG 0.324754 2_4:-52670365 Msa0334350:three_prime_UTR
CCTCTTAACTTATAGCTTAA+CGG 0.343612 2_4:-52670131 Msa0334350:three_prime_UTR
GGCTATACAAAATTTGTTGC+AGG 0.350353 2_4:-52670937 Msa0334350:CDS
CGTTGTTTGACAACTTTGAA+TGG 0.384234 2_4:-52670667 Msa0334350:CDS
CAGCTTTGCTTAGAGCCATA+AGG 0.398294 2_4:-52670828 Msa0334350:intron
AATTTGCGAGAAACGTCATT+TGG 0.423621 2_4:-52670297 Msa0334350:three_prime_UTR
CACAGGGTTATACCGCAGTT+TGG 0.427176 2_4:+52670335 None:intergenic
CCGTTAAGCTATAAGTTAAG+AGG 0.428233 2_4:+52670131 None:intergenic
AACATACTATCTATTATTAA+GGG 0.436629 2_4:-52670410 Msa0334350:three_prime_UTR
AAAATTTGGACTTTATTATG+TGG 0.449703 2_4:-52670627 Msa0334350:CDS
ATTTACTACATGATTTCAAA+CGG 0.464093 2_4:-52670876 Msa0334350:CDS
CCTTAAATAAATATGGTGTT+CGG 0.488632 2_4:+52670259 None:intergenic
AACCACTGAACAGAAAGTTT+AGG 0.495370 2_4:+52670581 None:intergenic
TTCCTAAACTTTCTGTTCAG+TGG 0.500829 2_4:-52670583 Msa0334350:CDS
TTAAAGATTCAAGTAGCCAC+AGG 0.511982 2_4:+52670318 None:intergenic
TACCATGTATCCTCTTACAT+CGG 0.525916 2_4:+52670694 None:intergenic
AGGATATTCTTCGCTACTCA+AGG 0.530163 2_4:-52670917 Msa0334350:CDS
ATCACTTGTGTAATATATGA+TGG 0.532372 2_4:-52670962 Msa0334350:exon
AGAAAAGGTGCCGATGTAAG+AGG 0.541742 2_4:-52670704 Msa0334350:CDS
TATCATTACTAGTATTGTTG+AGG 0.550205 2_4:+52670549 None:intergenic
ATGTAAGAGGATACATGGTA+TGG 0.567786 2_4:-52670691 Msa0334350:CDS
TATTCTTCGCTACTCAAGGC+AGG 0.572710 2_4:-52670913 Msa0334350:CDS
TGCCGATGTAAGAGGATACA+TGG 0.588178 2_4:-52670696 Msa0334350:CDS
CTTATAGCTTAACGGAAGCA+CGG 0.609529 2_4:-52670123 Msa0334350:three_prime_UTR
CTTGTGTAATATATGATGGA+TGG 0.620453 2_4:-52670958 Msa0334350:exon
TGGCTCTAAGCAAAGCTGCA+AGG 0.627948 2_4:+52670833 None:intergenic
TAAAGATTCAAGTAGCCACA+GGG 0.636122 2_4:+52670319 None:intergenic
GATCAATAGAGGTTTATGAG+TGG 0.641405 2_4:-52670065 Msa0334350:three_prime_UTR
GACAACTTTGAATGGAACAG+TGG 0.646793 2_4:-52670659 Msa0334350:CDS
CAAACTGCGGTATAACCCTG+TGG 0.722755 2_4:-52670334 Msa0334350:three_prime_UTR
TTTGGATGTTGACCAAACTG+CGG 0.763054 2_4:-52670347 Msa0334350:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATACTATCTATTATTAA+GGG - chr2_4:52670692-52670711 Msa0334350:CDS 15.0%
!!! ATACAATTTCATTTTTTCAA+TGG - chr2_4:52670871-52670890 Msa0334350:CDS 15.0%
!!! ATAAGTGATGTATTTTTATA+CGG - chr2_4:52670896-52670915 Msa0334350:CDS 15.0%
!! AACATACTATCTATTATTAA+GGG - chr2_4:52670692-52670711 Msa0334350:CDS 15.0%
!!! ATACAATTTCATTTTTTCAA+TGG - chr2_4:52670871-52670890 Msa0334350:CDS 15.0%
!!! ATAAGTGATGTATTTTTATA+CGG - chr2_4:52670896-52670915 Msa0334350:CDS 15.0%
!!! TATATGATCTCATTTTTGTT+TGG - chr2_4:52670102-52670121 Msa0334350:three_prime_UTR 20.0%
!! ATTTACTACATGATTTCAAA+CGG - chr2_4:52670226-52670245 Msa0334350:three_prime_UTR 20.0%
!!! AAAAGCATTCATAAAAAACA+AGG + chr2_4:52670334-52670353 None:intergenic 20.0%
!! AGTGGATATGATAAAAAATT+TGG - chr2_4:52670461-52670480 Msa0334350:three_prime_UTR 20.0%
!! AAAATTTGGACTTTATTATG+TGG - chr2_4:52670475-52670494 Msa0334350:exon 20.0%
!! CAACATACTATCTATTATTA+AGG - chr2_4:52670691-52670710 Msa0334350:CDS 20.0%
!! GTGAATTTCACTATTAAAAT+AGG - chr2_4:52670723-52670742 Msa0334350:intron 20.0%
!! ATCTACACCTTAAATAAATA+TGG + chr2_4:52670853-52670872 None:intergenic 20.0%
!!! TAATTGATTTTGATCAATAG+AGG - chr2_4:52671026-52671045 Msa0334350:five_prime_UTR 20.0%
!!! TATATGATCTCATTTTTGTT+TGG - chr2_4:52670102-52670121 Msa0334350:three_prime_UTR 20.0%
!! ATTTACTACATGATTTCAAA+CGG - chr2_4:52670226-52670245 Msa0334350:three_prime_UTR 20.0%
!!! AAAAGCATTCATAAAAAACA+AGG + chr2_4:52670334-52670353 None:intergenic 20.0%
!! AGTGGATATGATAAAAAATT+TGG - chr2_4:52670461-52670480 Msa0334350:three_prime_UTR 20.0%
!! AAAATTTGGACTTTATTATG+TGG - chr2_4:52670475-52670494 Msa0334350:exon 20.0%
!! CAACATACTATCTATTATTA+AGG - chr2_4:52670691-52670710 Msa0334350:CDS 20.0%
!! GTGAATTTCACTATTAAAAT+AGG - chr2_4:52670723-52670742 Msa0334350:intron 20.0%
!! ATCTACACCTTAAATAAATA+TGG + chr2_4:52670853-52670872 None:intergenic 20.0%
!!! TAATTGATTTTGATCAATAG+AGG - chr2_4:52671026-52671045 Msa0334350:five_prime_UTR 20.0%
!! CCATTTTCTGTAATATACAT+GGG + chr2_4:52670061-52670080 None:intergenic 25.0%
!! ACCATTTTCTGTAATATACA+TGG + chr2_4:52670062-52670081 None:intergenic 25.0%
! ATCACTTGTGTAATATATGA+TGG - chr2_4:52670140-52670159 Msa0334350:three_prime_UTR 25.0%
! AATTTGATTATGTGCAGAAA+AGG - chr2_4:52670383-52670402 Msa0334350:three_prime_UTR 25.0%
! TATCATTACTAGTATTGTTG+AGG + chr2_4:52670556-52670575 None:intergenic 25.0%
!!! TAAAATAGGTTGATTCTGTT+TGG - chr2_4:52670737-52670756 Msa0334350:intron 25.0%
! CCTTAAATAAATATGGTGTT+CGG + chr2_4:52670846-52670865 None:intergenic 25.0%
!! CCATTTTCTGTAATATACAT+GGG + chr2_4:52670061-52670080 None:intergenic 25.0%
!! ACCATTTTCTGTAATATACA+TGG + chr2_4:52670062-52670081 None:intergenic 25.0%
! ATCACTTGTGTAATATATGA+TGG - chr2_4:52670140-52670159 Msa0334350:three_prime_UTR 25.0%
! AATTTGATTATGTGCAGAAA+AGG - chr2_4:52670383-52670402 Msa0334350:three_prime_UTR 25.0%
! TATCATTACTAGTATTGTTG+AGG + chr2_4:52670556-52670575 None:intergenic 25.0%
!!! TAAAATAGGTTGATTCTGTT+TGG - chr2_4:52670737-52670756 Msa0334350:intron 25.0%
! CCTTAAATAAATATGGTGTT+CGG + chr2_4:52670846-52670865 None:intergenic 25.0%
CCCATGTATATTACAGAAAA+TGG - chr2_4:52670058-52670077 Msa0334350:three_prime_UTR 30.0%
! CTTGTGTAATATATGATGGA+TGG - chr2_4:52670144-52670163 Msa0334350:three_prime_UTR 30.0%
! TTATACTTTGTCTGTTGACT+GGG - chr2_4:52670356-52670375 Msa0334350:three_prime_UTR 30.0%
CCGAACACCATATTTATTTA+AGG - chr2_4:52670843-52670862 Msa0334350:CDS 30.0%
CCTCTTAACTTATAGCTTAA+CGG - chr2_4:52670971-52670990 Msa0334350:five_prime_UTR 30.0%
GATCACTCAGAACTTATTTA+AGG - chr2_4:52671064-52671083 Msa0334350:five_prime_UTR 30.0%
CCCATGTATATTACAGAAAA+TGG - chr2_4:52670058-52670077 Msa0334350:three_prime_UTR 30.0%
! CTTGTGTAATATATGATGGA+TGG - chr2_4:52670144-52670163 Msa0334350:three_prime_UTR 30.0%
! TTATACTTTGTCTGTTGACT+GGG - chr2_4:52670356-52670375 Msa0334350:three_prime_UTR 30.0%
CCGAACACCATATTTATTTA+AGG - chr2_4:52670843-52670862 Msa0334350:CDS 30.0%
CCTCTTAACTTATAGCTTAA+CGG - chr2_4:52670971-52670990 Msa0334350:five_prime_UTR 30.0%
GATCACTCAGAACTTATTTA+AGG - chr2_4:52671064-52671083 Msa0334350:five_prime_UTR 30.0%
!! GGCTATACAAAATTTGTTGC+AGG - chr2_4:52670165-52670184 Msa0334350:three_prime_UTR 35.0%
GTTATACTTTGTCTGTTGAC+TGG - chr2_4:52670355-52670374 Msa0334350:three_prime_UTR 35.0%
! TATACTTTGTCTGTTGACTG+GGG - chr2_4:52670357-52670376 Msa0334350:three_prime_UTR 35.0%
TACCATGTATCCTCTTACAT+CGG + chr2_4:52670411-52670430 None:intergenic 35.0%
ATGTAAGAGGATACATGGTA+TGG - chr2_4:52670411-52670430 Msa0334350:three_prime_UTR 35.0%
CGTTGTTTGACAACTTTGAA+TGG - chr2_4:52670435-52670454 Msa0334350:three_prime_UTR 35.0%
TTCCTAAACTTTCTGTTCAG+TGG - chr2_4:52670519-52670538 Msa0334350:CDS 35.0%
AACCACTGAACAGAAAGTTT+AGG + chr2_4:52670524-52670543 None:intergenic 35.0%
CTTGCTCAACTCTTCTATAT+TGG + chr2_4:52670579-52670598 None:intergenic 35.0%
TAAAGATTCAAGTAGCCACA+GGG + chr2_4:52670786-52670805 None:intergenic 35.0%
TTAAAGATTCAAGTAGCCAC+AGG + chr2_4:52670787-52670806 None:intergenic 35.0%
AATTTGCGAGAAACGTCATT+TGG - chr2_4:52670805-52670824 Msa0334350:intron 35.0%
CCGTTAAGCTATAAGTTAAG+AGG + chr2_4:52670974-52670993 None:intergenic 35.0%
GATCAATAGAGGTTTATGAG+TGG - chr2_4:52671037-52671056 Msa0334350:five_prime_UTR 35.0%
!! GGCTATACAAAATTTGTTGC+AGG - chr2_4:52670165-52670184 Msa0334350:three_prime_UTR 35.0%
GTTATACTTTGTCTGTTGAC+TGG - chr2_4:52670355-52670374 Msa0334350:three_prime_UTR 35.0%
! TATACTTTGTCTGTTGACTG+GGG - chr2_4:52670357-52670376 Msa0334350:three_prime_UTR 35.0%
TACCATGTATCCTCTTACAT+CGG + chr2_4:52670411-52670430 None:intergenic 35.0%
ATGTAAGAGGATACATGGTA+TGG - chr2_4:52670411-52670430 Msa0334350:three_prime_UTR 35.0%
CGTTGTTTGACAACTTTGAA+TGG - chr2_4:52670435-52670454 Msa0334350:three_prime_UTR 35.0%
TTCCTAAACTTTCTGTTCAG+TGG - chr2_4:52670519-52670538 Msa0334350:CDS 35.0%
AACCACTGAACAGAAAGTTT+AGG + chr2_4:52670524-52670543 None:intergenic 35.0%
CTTGCTCAACTCTTCTATAT+TGG + chr2_4:52670579-52670598 None:intergenic 35.0%
TAAAGATTCAAGTAGCCACA+GGG + chr2_4:52670786-52670805 None:intergenic 35.0%
TTAAAGATTCAAGTAGCCAC+AGG + chr2_4:52670787-52670806 None:intergenic 35.0%
AATTTGCGAGAAACGTCATT+TGG - chr2_4:52670805-52670824 Msa0334350:intron 35.0%
CCGTTAAGCTATAAGTTAAG+AGG + chr2_4:52670974-52670993 None:intergenic 35.0%
GATCAATAGAGGTTTATGAG+TGG - chr2_4:52671037-52671056 Msa0334350:five_prime_UTR 35.0%
AGGATATTCTTCGCTACTCA+AGG - chr2_4:52670185-52670204 Msa0334350:three_prime_UTR 40.0%
CTTCATCATCACTCACCTTA+TGG + chr2_4:52670292-52670311 None:intergenic 40.0%
GACAACTTTGAATGGAACAG+TGG - chr2_4:52670443-52670462 Msa0334350:three_prime_UTR 40.0%
TTTGGATGTTGACCAAACTG+CGG - chr2_4:52670755-52670774 Msa0334350:intron 40.0%
CTTATAGCTTAACGGAAGCA+CGG - chr2_4:52670979-52670998 Msa0334350:five_prime_UTR 40.0%
AGGATATTCTTCGCTACTCA+AGG - chr2_4:52670185-52670204 Msa0334350:three_prime_UTR 40.0%
CTTCATCATCACTCACCTTA+TGG + chr2_4:52670292-52670311 None:intergenic 40.0%
GACAACTTTGAATGGAACAG+TGG - chr2_4:52670443-52670462 Msa0334350:three_prime_UTR 40.0%
TTTGGATGTTGACCAAACTG+CGG - chr2_4:52670755-52670774 Msa0334350:intron 40.0%
CTTATAGCTTAACGGAAGCA+CGG - chr2_4:52670979-52670998 Msa0334350:five_prime_UTR 40.0%
TATTCTTCGCTACTCAAGGC+AGG - chr2_4:52670189-52670208 Msa0334350:three_prime_UTR 45.0%
CAGCTTTGCTTAGAGCCATA+AGG - chr2_4:52670274-52670293 Msa0334350:three_prime_UTR 45.0%
!! AGAAAAGGTGCCGATGTAAG+AGG - chr2_4:52670398-52670417 Msa0334350:three_prime_UTR 45.0%
TGCCGATGTAAGAGGATACA+TGG - chr2_4:52670406-52670425 Msa0334350:three_prime_UTR 45.0%
TATTCTTCGCTACTCAAGGC+AGG - chr2_4:52670189-52670208 Msa0334350:three_prime_UTR 45.0%
CAGCTTTGCTTAGAGCCATA+AGG - chr2_4:52670274-52670293 Msa0334350:three_prime_UTR 45.0%
!! AGAAAAGGTGCCGATGTAAG+AGG - chr2_4:52670398-52670417 Msa0334350:three_prime_UTR 45.0%
TGCCGATGTAAGAGGATACA+TGG - chr2_4:52670406-52670425 Msa0334350:three_prime_UTR 45.0%
!! TGGCTCTAAGCAAAGCTGCA+AGG + chr2_4:52670272-52670291 None:intergenic 50.0%
CACAGGGTTATACCGCAGTT+TGG + chr2_4:52670770-52670789 None:intergenic 50.0%
CAAACTGCGGTATAACCCTG+TGG - chr2_4:52670768-52670787 Msa0334350:intron 50.0%
!! TGGCTCTAAGCAAAGCTGCA+AGG + chr2_4:52670272-52670291 None:intergenic 50.0%
CACAGGGTTATACCGCAGTT+TGG + chr2_4:52670770-52670789 None:intergenic 50.0%
CAAACTGCGGTATAACCCTG+TGG - chr2_4:52670768-52670787 Msa0334350:intron 50.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 52670023 52671101 52670023 ID=Msa0334350;Name=Msa0334350
chr2_4 mRNA 52670023 52671101 52670023 ID=Msa0334350-mRNA-1;Parent=Msa0334350;Name=Msa0334350-mRNA-1;_AED=0.32;_eAED=0.32;_QI=133|1|1|1|1|1|2|464|125
chr2_4 exon 52670023 52670724 52670023 ID=Msa0334350-mRNA-1:exon:15863;Parent=Msa0334350-mRNA-1
chr2_4 exon 52670829 52671101 52670829 ID=Msa0334350-mRNA-1:exon:15862;Parent=Msa0334350-mRNA-1
chr2_4 five_prime_UTR 52670969 52671101 52670969 ID=Msa0334350-mRNA-1:five_prime_utr;Parent=Msa0334350-mRNA-1
chr2_4 CDS 52670829 52670968 52670829 ID=Msa0334350-mRNA-1:cds;Parent=Msa0334350-mRNA-1
chr2_4 CDS 52670487 52670724 52670487 ID=Msa0334350-mRNA-1:cds;Parent=Msa0334350-mRNA-1
chr2_4 three_prime_UTR 52670023 52670486 52670023 ID=Msa0334350-mRNA-1:three_prime_utr;Parent=Msa0334350-mRNA-1
Gene Sequence

>Msa0334350

ATGATGGATGGCTATACAAAATTTGTTGCAGGATATTCTTCGCTACTCAAGGCAGGCATGACGATGCATGATTTACTACATGATTTCAAACGGATAGAGTATCATAAAGCTTACCTTGCAGCTTTGCTTAGAGCCATAAGAAAAGGTGCCGATGTAAGAGGATACATGGTATGGTCGTTGTTTGACAACTTTGAATGGAACAGTGGATATGATAAAAAATTTGGACTTTATTATGTGGATAGACAGACACTTGAGCGAATTCCTAAACTTTCTGTTCAGTGGTTTTCTAGTTTCCTCAACAATACTAGTAATGATACCAATATAGAAGAGTTGAGCAAGCAATATAGAAGCAAATATCTGACAACTGCTGTTGTCTAA

Protein sequence

>Msa0334350

MMDGYTKFVAGYSSLLKAGMTMHDLLHDFKRIEYHKAYLAALLRAIRKGADVRGYMVWSLFDNFEWNSGYDKKFGLYYVDRQTLERIPKLSVQWFSSFLNNTSNDTNIEELSKQYRSKYLTTAVV*